Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072227.t1 | XP_003627034.2 | 98 | 1480 | 30 | 0 | 6 | 1485 | 1 | 1480 | 0.00E+00 | 2866.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072227.t1 | Q9XIE2 | 72.2 | 1464 | 384 | 4 | 22 | 1485 | 29 | 1469 | 0.0e+00 | 2149.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072227.t1 | G7LGN0 | 98.0 | 1480 | 30 | 0 | 6 | 1485 | 1 | 1480 | 0.0e+00 | 2866.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051959 | MS.gene072227 | 0.851627 | 7.85E-61 | -1.69E-46 |
| MS.gene051960 | MS.gene072227 | 0.850137 | 2.06E-60 | -1.69E-46 |
| MS.gene052040 | MS.gene072227 | 0.810002 | 1.43E-50 | -1.69E-46 |
| MS.gene052053 | MS.gene072227 | 0.845623 | 3.62E-59 | -1.69E-46 |
| MS.gene052559 | MS.gene072227 | 0.822581 | 2.19E-53 | -1.69E-46 |
| MS.gene052560 | MS.gene072227 | 0.841261 | 5.29E-58 | -1.69E-46 |
| MS.gene052579 | MS.gene072227 | 0.801658 | 8.11E-49 | -1.69E-46 |
| MS.gene055150 | MS.gene072227 | 0.839155 | 1.88E-57 | -1.69E-46 |
| MS.gene056530 | MS.gene072227 | 0.85983 | 3.15E-63 | -1.69E-46 |
| MS.gene057001 | MS.gene072227 | 0.837046 | 6.55E-57 | -1.69E-46 |
| MS.gene05884 | MS.gene072227 | 0.831059 | 2.07E-55 | -1.69E-46 |
| MS.gene059436 | MS.gene072227 | 0.809822 | 1.56E-50 | -1.69E-46 |
| MS.gene060237 | MS.gene072227 | 0.808482 | 3.03E-50 | -1.69E-46 |
| MS.gene060977 | MS.gene072227 | 0.819371 | 1.20E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 304 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAACCTTTGCAAGAGTTTC+TGG | 0.123550 | 8.1:-82981436 | MS.gene072227:CDS |
| AACATTCTTGAATCACTTAT+TGG | 0.141589 | 8.1:-82987425 | MS.gene072227:CDS |
| TTCTTAATCCGTTTGGATTT+TGG | 0.148560 | 8.1:+82981861 | None:intergenic |
| TCAGCAGTTCCCTTTCTTTC+AGG | 0.158994 | 8.1:+82984597 | None:intergenic |
| ACTGGTGGGTTTGGGCTAAT+TGG | 0.164151 | 8.1:-82982798 | MS.gene072227:CDS |
| GCAAAGGTTTCTTGGTTCTT+AGG | 0.172499 | 8.1:+82981448 | None:intergenic |
| TCATGATAGGGACAGTATTT+TGG | 0.197475 | 8.1:-82979935 | MS.gene072227:CDS |
| CAATTCCTGACTGGTGGGTT+TGG | 0.202915 | 8.1:-82982807 | MS.gene072227:CDS |
| TGTTGTATGAAACAGATATT+AGG | 0.209270 | 8.1:-82985911 | MS.gene072227:intron |
| GATGGTGGGTATGGTATTAT+TGG | 0.231554 | 8.1:-82978969 | MS.gene072227:CDS |
| AAGATGAAGAAGCTCTTAAA+TGG | 0.231811 | 8.1:-82988781 | MS.gene072227:CDS |
| GGAATACGCAACAGAAAATT+TGG | 0.236806 | 8.1:+82983167 | None:intergenic |
| CCTTTCATTCATATCCAATT+TGG | 0.237328 | 8.1:+82988640 | None:intergenic |
| TGTCTGCCCAGTATTGTTCT+TGG | 0.240812 | 8.1:+82983651 | None:intergenic |
| GCTGGCATTGGCTGGAAAAT+TGG | 0.246653 | 8.1:-82987025 | MS.gene072227:CDS |
| TGTATTATATTGCAGACTTC+TGG | 0.255204 | 8.1:-82982524 | MS.gene072227:intron |
| GACAATTCACATCTTGTCTT+TGG | 0.258534 | 8.1:-82980031 | MS.gene072227:CDS |
| AGAATGTTTAGTGCAGTATT+TGG | 0.268001 | 8.1:+82987440 | None:intergenic |
| GGAAGTTGATGTTACCAAAT+TGG | 0.268208 | 8.1:-82988654 | MS.gene072227:CDS |
| ATATATGCTGAAGTCTTTCT+TGG | 0.268967 | 8.1:+82986770 | None:intergenic |
| AAACTCTTGCAAAGGTTTCT+TGG | 0.270123 | 8.1:+82981440 | None:intergenic |
| GGATATATTGAACACCATTA+TGG | 0.280944 | 8.1:-82978841 | MS.gene072227:CDS |
| GGTAGAATCATTCCTCTTCT+TGG | 0.290414 | 8.1:+82981812 | None:intergenic |
| TTGGCTTGTGCTCTCATGAT+AGG | 0.293653 | 8.1:-82979948 | MS.gene072227:CDS |
| GCTTGATTATATTACCTTGA+TGG | 0.294296 | 8.1:+82987332 | None:intergenic |
| ATCTTTGCAGCGGCATTCTA+TGG | 0.295669 | 8.1:-82979330 | MS.gene072227:CDS |
| AATTCCTGACTGGTGGGTTT+GGG | 0.296252 | 8.1:-82982806 | MS.gene072227:CDS |
| AATTATTCATTTATCTTGAT+TGG | 0.300842 | 8.1:+82978719 | None:intergenic |
| CTGGTGGGTTTGGGCTAATT+GGG | 0.307496 | 8.1:-82982797 | MS.gene072227:CDS |
| CAAAGGTTTCTTGGTTCTTA+GGG | 0.308315 | 8.1:+82981449 | None:intergenic |
| CTGATCTATGGAGGACCTTT+AGG | 0.308915 | 8.1:-82980589 | MS.gene072227:CDS |
| GTTGAAGCTGATTCCTTTGT+TGG | 0.310830 | 8.1:-82987485 | MS.gene072227:CDS |
| GATTTCATGGGTCCGGTTGC+AGG | 0.318241 | 8.1:-82978808 | MS.gene072227:CDS |
| GAATCACTTATTGGCATGTT+TGG | 0.319787 | 8.1:-82987416 | MS.gene072227:CDS |
| GGAAGCAGTGGTTGACATAT+TGG | 0.323127 | 8.1:-82980010 | MS.gene072227:CDS |
| CGCCGGGAAGACAACTTTAA+TGG | 0.326042 | 8.1:-82981533 | MS.gene072227:CDS |
| GGAAGGTAGAAAAGTTCTTT+TGG | 0.327075 | 8.1:-82979443 | MS.gene072227:CDS |
| ATGTTTATGCTAATGAAAAT+TGG | 0.327153 | 8.1:-82982457 | MS.gene072227:CDS |
| ACTTGTTCTTAACCTATCAT+AGG | 0.330742 | 8.1:+82988736 | None:intergenic |
| CTTAAAGAACCTGCTGGCTT+CGG | 0.333414 | 8.1:+82983082 | None:intergenic |
| TCCTCATTACCAACTTCTTT+AGG | 0.334296 | 8.1:+82981334 | None:intergenic |
| ACCGATCTGACACTGGTTAT+AGG | 0.335572 | 8.1:-82979786 | MS.gene072227:CDS |
| CAAAGATTGACGCAACTTGA+TGG | 0.342673 | 8.1:+82979346 | None:intergenic |
| GAAAGGACCAAGAACAATAC+TGG | 0.342767 | 8.1:-82983658 | MS.gene072227:CDS |
| GCATCTAGCTGAGAAATCTA+AGG | 0.342784 | 8.1:+82986703 | None:intergenic |
| AACAAGTCAAGTTCTGCTTC+TGG | 0.346756 | 8.1:+82986498 | None:intergenic |
| ATCCATTAAAGTTGTCTTCC+CGG | 0.348125 | 8.1:+82981531 | None:intergenic |
| TGGAGTTCTTACTGCACTAA+TGG | 0.351014 | 8.1:-82981566 | MS.gene072227:CDS |
| TAATCCTTCAATCATATTCA+TGG | 0.355171 | 8.1:-82981040 | MS.gene072227:CDS |
| TGGTTTCAAACCTGATTTCA+TGG | 0.360546 | 8.1:-82978821 | MS.gene072227:CDS |
| ACTTCTAGCATCCATGTTGC+AGG | 0.361378 | 8.1:+82980348 | None:intergenic |
| GGGTCCGGTTGCAGGAGTTT+TGG | 0.362344 | 8.1:-82978800 | MS.gene072227:CDS |
| AAATGGCAGCTGGTATGTTT+AGG | 0.362349 | 8.1:-82983031 | MS.gene072227:CDS |
| TGAATTGTTTCCATCAGCTT+TGG | 0.363876 | 8.1:+82982113 | None:intergenic |
| TTAAAGAACCTGCTGGCTTC+GGG | 0.366731 | 8.1:+82983083 | None:intergenic |
| GAGTAGGTCAAGTTGGAAAA+TGG | 0.369536 | 8.1:-82988855 | MS.gene072227:CDS |
| CAGCAGTTCCCTTTCTTTCA+GGG | 0.371496 | 8.1:+82984598 | None:intergenic |
| TCAGCATTTCTTAATCCGTT+TGG | 0.371715 | 8.1:+82981854 | None:intergenic |
| GGGAAGTAACCGGTTCCTTT+AGG | 0.372750 | 8.1:-82981591 | MS.gene072227:CDS |
| TTCCAGCCAATGCCAGCAAT+AGG | 0.374785 | 8.1:+82987031 | None:intergenic |
| TTCATGGATGAGCCAACTTC+TGG | 0.375189 | 8.1:-82981024 | MS.gene072227:CDS |
| ATGCTAATGAAAATTGGTAT+TGG | 0.375873 | 8.1:-82982451 | MS.gene072227:CDS |
| CAAGGAGTTGGAACTAGATA+TGG | 0.380504 | 8.1:-82986680 | MS.gene072227:intron |
| AGAGGAGGGCAACTGATCTA+TGG | 0.385252 | 8.1:-82980601 | MS.gene072227:CDS |
| TGAGGAAGATGCAACTGAAT+TGG | 0.385372 | 8.1:-82982211 | MS.gene072227:CDS |
| TTGTGTTGCTGCCTGTGTCC+TGG | 0.387231 | 8.1:+82988677 | None:intergenic |
| GTTGTATGAAACAGATATTA+GGG | 0.387379 | 8.1:-82985910 | MS.gene072227:intron |
| GATGCAGAAGGCAAATATAA+AGG | 0.388423 | 8.1:+82978756 | None:intergenic |
| GGACTCTTTAACCTCTTCTC+TGG | 0.389632 | 8.1:-82979309 | MS.gene072227:CDS |
| GTAAGAAACACTGTTGATAC+TGG | 0.395755 | 8.1:-82980964 | MS.gene072227:CDS |
| GAAATGAATAGAGGTGTATC+TGG | 0.396627 | 8.1:-82985854 | MS.gene072227:CDS |
| CAGCTGCCATTTGTTGGATA+AGG | 0.398187 | 8.1:+82983042 | None:intergenic |
| ACATACCAGCTGCCATTTGT+TGG | 0.399680 | 8.1:+82983036 | None:intergenic |
| TACTAAGTGAGCTTGCTAGA+AGG | 0.401774 | 8.1:-82986542 | MS.gene072227:CDS |
| TGAGAGTGTTAATTACTTTG+TGG | 0.407358 | 8.1:-82981765 | MS.gene072227:CDS |
| ACATTTGGATGCATCCATCT+TGG | 0.407402 | 8.1:+82982721 | None:intergenic |
| GGTATGTTTAGGTTCATTGC+TGG | 0.407780 | 8.1:-82983020 | MS.gene072227:CDS |
| AGGGAAAACGACCCTATTGC+TGG | 0.408035 | 8.1:-82987043 | MS.gene072227:CDS |
| TTGAATTCTTTGAATCTTGT+GGG | 0.408664 | 8.1:-82984629 | MS.gene072227:CDS |
| GACCTATGCTTACCATGCCT+TGG | 0.413454 | 8.1:-82982764 | MS.gene072227:CDS |
| GTTTGAGTCTCTTGCTTGGA+TGG | 0.414444 | 8.1:-82983135 | MS.gene072227:CDS |
| CAAACCTGATTTCATGGGTC+CGG | 0.418558 | 8.1:-82978815 | MS.gene072227:CDS |
| CCATACACTGTCCATGCAAC+TGG | 0.421918 | 8.1:+82978940 | None:intergenic |
| GTGATCGAAGCATTGATTCT+CGG | 0.423154 | 8.1:+82982139 | None:intergenic |
| ATTAGGGCTTGATATTTGTA+AGG | 0.424504 | 8.1:-82985894 | MS.gene072227:CDS |
| ACCCTATTGCTGGCATTGGC+TGG | 0.425050 | 8.1:-82987033 | MS.gene072227:CDS |
| TATCTGACTAGATTGTAATC+TGG | 0.425057 | 8.1:+82979981 | None:intergenic |
| GAAGGAGATGTTAGAATCTC+TGG | 0.427252 | 8.1:-82981475 | MS.gene072227:CDS |
| AAGCATGTTGGGACAAAGAA+TGG | 0.427570 | 8.1:-82983457 | MS.gene072227:CDS |
| AGAATGGTACTCACAGGTCT+TGG | 0.429255 | 8.1:+82979276 | None:intergenic |
| TTAAGATTGTTCCTTCAGTT+AGG | 0.432739 | 8.1:+82984754 | None:intergenic |
| GTTGAATTCTTTGAATCTTG+TGG | 0.433147 | 8.1:-82984630 | MS.gene072227:CDS |
| CATGCTTGAAATAGCACAAA+TGG | 0.436224 | 8.1:+82979507 | None:intergenic |
| TGATTTACTCTGCTTTCCTT+CGG | 0.437085 | 8.1:-82981360 | MS.gene072227:CDS |
| TTCTATAGAGAAAGAGCTGC+TGG | 0.437816 | 8.1:-82979681 | MS.gene072227:CDS |
| GTTGTTACCTACTACACCAT+TGG | 0.440190 | 8.1:-82983113 | MS.gene072227:CDS |
| ACAATGATTATTGCAAATAC+TGG | 0.441853 | 8.1:-82982987 | MS.gene072227:CDS |
| CCAGTTGCATGGACAGTGTA+TGG | 0.442526 | 8.1:-82978940 | MS.gene072227:CDS |
| CAAGATTATCGAATACTTTG+AGG | 0.442907 | 8.1:-82980554 | MS.gene072227:intron |
| CAGGTTCAATTCCTGACTGG+TGG | 0.442962 | 8.1:-82982813 | MS.gene072227:CDS |
| GTTCTTTCAATGGCTACAAC+TGG | 0.444175 | 8.1:+82979708 | None:intergenic |
| AATCAGGTTTGAAACCATAA+TGG | 0.444333 | 8.1:+82978827 | None:intergenic |
| AGAGACTCAAACATAGAAAT+CGG | 0.445290 | 8.1:+82983146 | None:intergenic |
| GCAACCGGACCCATGAAATC+AGG | 0.447242 | 8.1:+82978811 | None:intergenic |
| TCCAGCCAATGCCAGCAATA+GGG | 0.447651 | 8.1:+82987032 | None:intergenic |
| ATAGAACACTGTTCTTTCAA+TGG | 0.447767 | 8.1:+82979698 | None:intergenic |
| TACAGGATGGCCCTATTGTT+AGG | 0.447858 | 8.1:-82987078 | MS.gene072227:intron |
| TGTGGAGCAAGTGATGGATT+TGG | 0.449149 | 8.1:-82981166 | MS.gene072227:CDS |
| AGTGCAGTATTTGGTAAAGT+TGG | 0.450954 | 8.1:+82987449 | None:intergenic |
| TTCATGGATGAAATATCAAC+TGG | 0.451371 | 8.1:-82984831 | MS.gene072227:CDS |
| CATCTTGTCTTTGGAAGCAG+TGG | 0.452780 | 8.1:-82980022 | MS.gene072227:CDS |
| CTTCGGTTGCCTAAAGAAGT+TGG | 0.455655 | 8.1:-82981343 | MS.gene072227:CDS |
| TTGACAGGAAATGAAAGAGC+AGG | 0.457272 | 8.1:-82981644 | MS.gene072227:intron |
| GTGGGGCTACCAGGAGTCAC+AGG | 0.459583 | 8.1:-82981114 | MS.gene072227:CDS |
| CATATCTAGTTCCAACTCCT+TGG | 0.459838 | 8.1:+82986681 | None:intergenic |
| CTATGTTTGAGTCTCTTGCT+TGG | 0.460715 | 8.1:-82983139 | MS.gene072227:CDS |
| ATTGACGCAACTTGATGGTT+TGG | 0.460787 | 8.1:+82979351 | None:intergenic |
| TGTGCACTTGACTTGTCAAA+TGG | 0.463059 | 8.1:+82983533 | None:intergenic |
| TGAACAGGTTACATCAAGAA+AGG | 0.463520 | 8.1:-82983675 | MS.gene072227:intron |
| ATGATTATGAACATGTTCAA+TGG | 0.464338 | 8.1:-82983281 | MS.gene072227:CDS |
| GACTTAGGTACATAAGTGTA+AGG | 0.467517 | 8.1:+82982375 | None:intergenic |
| AACTCCAGGCCTAAAGGAAC+CGG | 0.467759 | 8.1:+82981582 | None:intergenic |
| TGCTGCCTGTGTCCTGGCTG+AGG | 0.468949 | 8.1:+82988683 | None:intergenic |
| AAGACGGACTTCAGCGGCTA+TGG | 0.469092 | 8.1:+82980320 | None:intergenic |
| GATGCTATTGTGGGGCTACC+AGG | 0.469236 | 8.1:-82981123 | MS.gene072227:CDS |
| AAGTACTCTCAATCAACATT+TGG | 0.470648 | 8.1:-82980053 | MS.gene072227:CDS |
| AAGACTGGTGGCTACATTGA+AGG | 0.471038 | 8.1:-82981493 | MS.gene072227:CDS |
| AGAAACTTCCAACCTATGAT+AGG | 0.471851 | 8.1:-82988748 | MS.gene072227:CDS |
| GGTGTTCCTTATCCAACAAA+TGG | 0.475781 | 8.1:-82983048 | MS.gene072227:CDS |
| TTCCCTTTCTTTCAGGGCAA+CGG | 0.477405 | 8.1:+82984604 | None:intergenic |
| TGGCTTGTGCTCTCATGATA+GGG | 0.479587 | 8.1:-82979947 | MS.gene072227:CDS |
| CCAACCAAAACTCCTGCAAC+CGG | 0.479749 | 8.1:+82978796 | None:intergenic |
| GGAGATAAAACTACCACATT+GGG | 0.479757 | 8.1:-82982503 | MS.gene072227:CDS |
| TTCTTGTACTTCACTTACTA+CGG | 0.479912 | 8.1:-82979396 | MS.gene072227:CDS |
| GAAGGCGGCCTCACGAGTCT+TGG | 0.481072 | 8.1:+82982165 | None:intergenic |
| GGAGTTCTTACTGCACTAAT+GGG | 0.481386 | 8.1:-82981565 | MS.gene072227:CDS |
| TAAAACTACCACATTGGGTC+TGG | 0.483133 | 8.1:-82982498 | MS.gene072227:CDS |
| TTCCAGGTTCAATTCCTGAC+TGG | 0.485246 | 8.1:-82982816 | MS.gene072227:intron |
| GAATGGTACTCACAGGTCTT+GGG | 0.485486 | 8.1:+82979277 | None:intergenic |
| AAGTCTCAAGGATGCTATTG+TGG | 0.490410 | 8.1:-82981133 | MS.gene072227:CDS |
| ATTTGTAAGGACACTATAGT+TGG | 0.492094 | 8.1:-82985881 | MS.gene072227:CDS |
| AAAATTGGACTCTGAATTGA+GGG | 0.492254 | 8.1:-82987010 | MS.gene072227:intron |
| TCAGCTAGATGCCAAGGAGT+TGG | 0.493596 | 8.1:-82986692 | MS.gene072227:CDS |
| TATATTTGCCTTCTGCATCA+AGG | 0.494924 | 8.1:-82978752 | MS.gene072227:CDS |
| AGCAGGGAGTGACAGAAGAT+AGG | 0.495580 | 8.1:-82981627 | MS.gene072227:CDS |
| AGTCTCAAGGATGCTATTGT+GGG | 0.496029 | 8.1:-82981132 | MS.gene072227:CDS |
| AAATTCCAGGATGGTGGGTA+TGG | 0.497134 | 8.1:-82978978 | MS.gene072227:CDS |
| AAGATAGGTTACAATTGCTA+AGG | 0.497648 | 8.1:-82981612 | MS.gene072227:CDS |
| GAAGCTTGAGTAGGTCAAGT+TGG | 0.499041 | 8.1:-82988862 | MS.gene072227:CDS |
| ACTAAGTGAGCTTGCTAGAA+GGG | 0.500000 | 8.1:-82986541 | MS.gene072227:CDS |
| AGGTTCAATTCCTGACTGGT+GGG | 0.500056 | 8.1:-82982812 | MS.gene072227:CDS |
| AGAAATGCTGATGCAGACAC+TGG | 0.500448 | 8.1:-82981842 | MS.gene072227:CDS |
| CAAAGGACATTGCAAGTGGT+TGG | 0.500692 | 8.1:+82981786 | None:intergenic |
| TTAAACCTCACTTCTACTGT+TGG | 0.502605 | 8.1:+82987518 | None:intergenic |
| TGAGCTTGCTAGAAGGGAAA+AGG | 0.503000 | 8.1:-82986535 | MS.gene072227:CDS |
| GTAACCGGTTCCTTTAGGCC+TGG | 0.504289 | 8.1:-82981586 | MS.gene072227:CDS |
| GTTCCGTTGCCCTGAAAGAA+AGG | 0.505762 | 8.1:-82984607 | MS.gene072227:CDS |
| TTGTGTGAATTCCGACCTAA+AGG | 0.506208 | 8.1:+82980574 | None:intergenic |
| ACTGAAAATTTCACTGTCAA+AGG | 0.507117 | 8.1:-82978862 | MS.gene072227:CDS |
| CAAAGCTCTGCTGCCAACAA+AGG | 0.507715 | 8.1:+82987472 | None:intergenic |
| GCAATTTGTGGAGCAAGTGA+TGG | 0.510288 | 8.1:-82981172 | MS.gene072227:CDS |
| TAATACCATACCCACCATCC+TGG | 0.510641 | 8.1:+82978973 | None:intergenic |
| AAAACAGGTGAAATGATTGT+TGG | 0.511213 | 8.1:-82984870 | MS.gene072227:intron |
| AACGACCCTATTGCTGGCAT+TGG | 0.514080 | 8.1:-82987037 | MS.gene072227:CDS |
| AGTAAGAACTCCAGGCCTAA+AGG | 0.514166 | 8.1:+82981576 | None:intergenic |
| AATTGGTATTGGATTGGTGC+TGG | 0.514697 | 8.1:-82982440 | MS.gene072227:CDS |
| CTTACCTGTGCTACGGCGTA+AGG | 0.515056 | 8.1:+82979642 | None:intergenic |
| AAGATAATGAAAAGTACCTC+AGG | 0.515286 | 8.1:-82988580 | MS.gene072227:CDS |
| AGGTTGATCACCCTCTGTAA+AGG | 0.515415 | 8.1:+82988703 | None:intergenic |
| GATGATCCCATTCGTGTGCT+CGG | 0.517001 | 8.1:-82978889 | MS.gene072227:CDS |
| GATTCGCTCCCGAAGCCAGC+AGG | 0.518259 | 8.1:-82983091 | MS.gene072227:CDS |
| TTCAGAAAATTCCAGGATGG+TGG | 0.519496 | 8.1:-82978984 | MS.gene072227:intron |
| ATTGGATTTGTCCAGTTGCA+TGG | 0.519916 | 8.1:-82978951 | MS.gene072227:CDS |
| ATGACTCACTTTAGGGGAAG+TGG | 0.520110 | 8.1:-82981903 | MS.gene072227:intron |
| GACATTATTCTTATATCTGA+GGG | 0.520482 | 8.1:-82984687 | MS.gene072227:CDS |
| ACTGCACTAATGGGAGTTAG+TGG | 0.520517 | 8.1:-82981556 | MS.gene072227:CDS |
| GGTTTCAAACCTGATTTCAT+GGG | 0.520626 | 8.1:-82978820 | MS.gene072227:CDS |
| GATTTCTCAGCTAGATGCCA+AGG | 0.520631 | 8.1:-82986698 | MS.gene072227:CDS |
| CGCTGAAGTCCGTCTTGGAA+TGG | 0.521394 | 8.1:-82980313 | MS.gene072227:CDS |
| AACTTGATGGTTTGGTGTGA+TGG | 0.522322 | 8.1:+82979359 | None:intergenic |
| GAGCAGCTGCTATTGTTATG+AGG | 0.527162 | 8.1:-82980990 | MS.gene072227:CDS |
| CTAATGGGAGTTAGTGGCGC+CGG | 0.527311 | 8.1:-82981550 | MS.gene072227:CDS |
| AGTCAAAATGATGTTCATGT+TGG | 0.527733 | 8.1:-82986746 | MS.gene072227:CDS |
| AGATGAAGAAGCTCTTAAAT+GGG | 0.528794 | 8.1:-82988780 | MS.gene072227:CDS |
| TGACATTATTCTTATATCTG+AGG | 0.529071 | 8.1:-82984688 | MS.gene072227:CDS |
| GAAAATTGGACTCTGAATTG+AGG | 0.530794 | 8.1:-82987011 | MS.gene072227:CDS |
| AGATCGAATGTCTCAGGAGC+TGG | 0.531821 | 8.1:+82984717 | None:intergenic |
| AATGCGAGGTCTTACGACTT+AGG | 0.533720 | 8.1:+82982360 | None:intergenic |
| AATGAAAATTGGTATTGGAT+TGG | 0.534527 | 8.1:-82982446 | MS.gene072227:CDS |
| GTTCTTAACCTATCATAGGT+TGG | 0.534585 | 8.1:+82988740 | None:intergenic |
| CCAAATTGGATATGAATGAA+AGG | 0.535696 | 8.1:-82988640 | MS.gene072227:CDS |
| GCCTAAAGAAGTTGGTAATG+AGG | 0.535697 | 8.1:-82981335 | MS.gene072227:CDS |
| AGGACACAGGCAGCAACACA+AGG | 0.536058 | 8.1:-82988675 | MS.gene072227:CDS |
| TCATCCATGAATATGATTGA+AGG | 0.536246 | 8.1:+82981036 | None:intergenic |
| AGCATTGATTCTCGGTTGGA+AGG | 0.537507 | 8.1:+82982147 | None:intergenic |
| TAATGGGAGTTAGTGGCGCC+GGG | 0.537687 | 8.1:-82981549 | MS.gene072227:CDS |
| TTAGCCCAAACCCACCAGTC+AGG | 0.538041 | 8.1:+82982802 | None:intergenic |
| GTTGACAACCCTGTGACTCC+TGG | 0.538069 | 8.1:+82981105 | None:intergenic |
| AGCGAATCCAATGGTGTAGT+AGG | 0.538895 | 8.1:+82983106 | None:intergenic |
| CAATGTGTTCACGTGGACCT+TGG | 0.539521 | 8.1:+82984652 | None:intergenic |
| AACTTGCACTAACAATTCAA+AGG | 0.540468 | 8.1:-82983250 | MS.gene072227:CDS |
| CAAAAGAAGCGTGTGACCAC+AGG | 0.540738 | 8.1:-82985827 | MS.gene072227:intron |
| GACACAGTGACATATCTGTA+TGG | 0.541579 | 8.1:+82983620 | None:intergenic |
| TTCCGTTGCCCTGAAAGAAA+GGG | 0.541797 | 8.1:-82984606 | MS.gene072227:CDS |
| AGTAGCTCCGAGCACACGAA+TGG | 0.542203 | 8.1:+82978882 | None:intergenic |
| CATTACAGACTATACTCTAA+AGG | 0.542655 | 8.1:-82986332 | MS.gene072227:intron |
| TCAGAAAATTCCAGGATGGT+GGG | 0.542901 | 8.1:-82978983 | MS.gene072227:intron |
| ATTAGTGCAGTAAGAACTCC+AGG | 0.549830 | 8.1:+82981568 | None:intergenic |
| ATCAATACTCACGTTTAGGA+AGG | 0.550162 | 8.1:+82982919 | None:intergenic |
| ATAGCCGCTGAAGTCCGTCT+TGG | 0.553083 | 8.1:-82980318 | MS.gene072227:CDS |
| AGAACTTGACTTGTTCATGA+AGG | 0.553220 | 8.1:-82986490 | MS.gene072227:intron |
| GAGAAGCAAAGCTCTTGTAA+AGG | 0.553507 | 8.1:-82980123 | MS.gene072227:CDS |
| AGTTCGCAAACAAATTCAAA+CGG | 0.554191 | 8.1:-82983595 | MS.gene072227:CDS |
| TCGAAGCATTGATTCTCGGT+TGG | 0.554799 | 8.1:+82982143 | None:intergenic |
| CTTATCCAACAAATGGCAGC+TGG | 0.556419 | 8.1:-82983041 | MS.gene072227:CDS |
| AAGTCCAAGCAGGATGGAAA+AGG | 0.558111 | 8.1:+82983198 | None:intergenic |
| TCCTATAACCAGTGTCAGAT+CGG | 0.558267 | 8.1:+82979785 | None:intergenic |
| CAGCTCATATTGATGAAAAG+AGG | 0.558663 | 8.1:-82980619 | MS.gene072227:CDS |
| CGATCACTATCCAAAGCTGA+TGG | 0.558830 | 8.1:-82982123 | MS.gene072227:CDS |
| AAAGTAATTAACACTCTCAA+AGG | 0.560968 | 8.1:+82981769 | None:intergenic |
| TTCTGTTTCTGAATTTCCTG+AGG | 0.561701 | 8.1:+82988564 | None:intergenic |
| TGGAGATAAAACTACCACAT+TGG | 0.561909 | 8.1:-82982504 | MS.gene072227:CDS |
| GCATGGTAAGCATAGGTCAA+TGG | 0.561991 | 8.1:+82982769 | None:intergenic |
| AACTGCTGATTTCTTGCAAG+AGG | 0.567124 | 8.1:-82984583 | MS.gene072227:intron |
| GGTTCATTGCTGGAACATGT+AGG | 0.567563 | 8.1:-82983010 | MS.gene072227:CDS |
| ATGAGTAGCCAAAATCCAAA+CGG | 0.569256 | 8.1:-82981869 | MS.gene072227:CDS |
| CAACTTCTTTAGGCAACCGA+AGG | 0.572051 | 8.1:+82981344 | None:intergenic |
| GCTAGAAGGGAAAAGGAAGC+TGG | 0.573279 | 8.1:-82986528 | MS.gene072227:CDS |
| CTGGCATTGTCAAACCATCA+AGG | 0.574198 | 8.1:-82987346 | MS.gene072227:intron |
| GTTGGTGATGAAATGAATAG+AGG | 0.574438 | 8.1:-82985863 | MS.gene072227:CDS |
| TGACAGGAAATGAAAGAGCA+GGG | 0.576410 | 8.1:-82981643 | MS.gene072227:intron |
| GACATTGCAAGTGGTTGGAA+AGG | 0.578154 | 8.1:+82981791 | None:intergenic |
| CAATTGCTAAGGGAAGTAAC+CGG | 0.578849 | 8.1:-82981601 | MS.gene072227:CDS |
| ATAACCAGAAACTCTTGCAA+AGG | 0.580654 | 8.1:+82981432 | None:intergenic |
| GGTAGAGCTGCAAAGTCTCA+AGG | 0.580913 | 8.1:-82981145 | MS.gene072227:CDS |
| CTGTGTAAGTCCAAGCAGGA+TGG | 0.581166 | 8.1:+82983192 | None:intergenic |
| TTGTAGGCTACTGCAGTGAA+AGG | 0.582105 | 8.1:-82986370 | MS.gene072227:intron |
| GTAGCTCCGAGCACACGAAT+GGG | 0.583756 | 8.1:+82978883 | None:intergenic |
| TAAACAAGCAATTATATCTG+AGG | 0.586610 | 8.1:-82982229 | MS.gene072227:CDS |
| TCAGCCTCTTACCTGTGCTA+CGG | 0.586794 | 8.1:+82979635 | None:intergenic |
| ATGGAAGAAGTGTTTGCTAG+TGG | 0.587003 | 8.1:-82988836 | MS.gene072227:CDS |
| GCAACTGAATTGGAGGGTGA+AGG | 0.587858 | 8.1:-82982201 | MS.gene072227:CDS |
| TTTGCCTTACGCCGTAGCAC+AGG | 0.587875 | 8.1:-82979646 | MS.gene072227:intron |
| GGAAGATGCAACTGAATTGG+AGG | 0.589126 | 8.1:-82982208 | MS.gene072227:CDS |
| CAAGGAGAAATTACTTACAA+TGG | 0.589496 | 8.1:-82986815 | MS.gene072227:CDS |
| AAATTCAAACGGTTCCATGT+TGG | 0.589929 | 8.1:-82983584 | MS.gene072227:CDS |
| CTTGCATCTAGACCAGAAGT+TGG | 0.590315 | 8.1:+82981012 | None:intergenic |
| GGAACTGTGTAAGTCCAAGC+AGG | 0.591909 | 8.1:+82983188 | None:intergenic |
| ATGATTATTGCAAATACTGG+TGG | 0.592162 | 8.1:-82982984 | MS.gene072227:CDS |
| TCTCTTTGTTTATAAAACAC+AGG | 0.596211 | 8.1:+82983224 | None:intergenic |
| ATGAAATGTATGCTCCAAGA+TGG | 0.596694 | 8.1:-82982735 | MS.gene072227:CDS |
| CAAATTGTGCACCTAACTGA+AGG | 0.598153 | 8.1:-82984765 | MS.gene072227:CDS |
| TGTCAACTGAACAAAGAAAG+AGG | 0.600014 | 8.1:-82981089 | MS.gene072227:CDS |
| GCTTCAAAGATATCAATGCT+AGG | 0.602094 | 8.1:+82980913 | None:intergenic |
| AAATGTACAATCCTGCAACA+TGG | 0.602973 | 8.1:-82980359 | MS.gene072227:CDS |
| AGATAGGTTACAATTGCTAA+GGG | 0.604066 | 8.1:-82981611 | MS.gene072227:CDS |
| AGCAGTGGTTGACATATTGG+AGG | 0.607374 | 8.1:-82980007 | MS.gene072227:CDS |
| GGCTTCGGGAGCGAATCCAA+TGG | 0.607718 | 8.1:+82983097 | None:intergenic |
| GAGGGTGATCAACCTCAGCC+AGG | 0.608555 | 8.1:-82988695 | MS.gene072227:CDS |
| GGATAAAGAAACCAGAGAAG+AGG | 0.609126 | 8.1:+82979298 | None:intergenic |
| CTCATATTGATGAAAAGAGG+AGG | 0.611627 | 8.1:-82980616 | MS.gene072227:CDS |
| AGGTTAGTATACCTCATCAA+AGG | 0.613711 | 8.1:+82980891 | None:intergenic |
| TATCTTTGAAGCCTTTGATG+AGG | 0.614767 | 8.1:-82980902 | MS.gene072227:intron |
| TATCATGAGAGCACAAGCCA+AGG | 0.616678 | 8.1:+82979950 | None:intergenic |
| ACTGGAAATGCACCAAGAAG+AGG | 0.620302 | 8.1:-82981824 | MS.gene072227:CDS |
| GACTTCCAACAGTAGAAGTG+AGG | 0.622053 | 8.1:-82987523 | MS.gene072227:CDS |
| CTCTCAAAGGACATTGCAAG+TGG | 0.622929 | 8.1:+82981782 | None:intergenic |
| TTTCATTCACAACCAAGGCA+TGG | 0.623607 | 8.1:+82982752 | None:intergenic |
| CTCACTCATAGTGTATGCAA+TGG | 0.625044 | 8.1:-82979478 | MS.gene072227:CDS |
| ATTATGCAAACCTTTACAGA+GGG | 0.625061 | 8.1:-82988713 | MS.gene072227:CDS |
| AAGAAAGAGGCTGACAATTG+CGG | 0.625365 | 8.1:-82981076 | MS.gene072227:CDS |
| GTAGTAAGTGAAGTACAAGA+AGG | 0.626913 | 8.1:+82979398 | None:intergenic |
| AAATCACTACTTCCTGGTGG+TGG | 0.627282 | 8.1:+82980089 | None:intergenic |
| ATTGATTCTCGGTTGGAAGG+CGG | 0.628418 | 8.1:+82982150 | None:intergenic |
| GTTCAGTGCCTTGATGCAGA+AGG | 0.629103 | 8.1:+82978744 | None:intergenic |
| GTTCAAGACGTACTCCAACA+TGG | 0.629769 | 8.1:+82983570 | None:intergenic |
| ACTTAGGTACATAAGTGTAA+GGG | 0.634536 | 8.1:+82982376 | None:intergenic |
| GTATAAGTAGAAGCTTGAGT+AGG | 0.635196 | 8.1:-82988871 | MS.gene072227:CDS |
| AAAGGACCAAGAACAATACT+GGG | 0.636614 | 8.1:-82983657 | MS.gene072227:CDS |
| GAGTTAAGTACACCACCACC+AGG | 0.638309 | 8.1:-82980101 | MS.gene072227:CDS |
| AAATTGCTTAAAGAACCTGC+TGG | 0.641182 | 8.1:+82983076 | None:intergenic |
| CATTCCAAGACGGACTTCAG+CGG | 0.642780 | 8.1:+82980314 | None:intergenic |
| AGTTGCGTCAATCTTTGCAG+CGG | 0.643435 | 8.1:-82979340 | MS.gene072227:CDS |
| GAGCTCGACCGATCTGACAC+TGG | 0.647698 | 8.1:-82979793 | MS.gene072227:CDS |
| ATACATTTCATTCACAACCA+AGG | 0.647956 | 8.1:+82982747 | None:intergenic |
| AACCAAGGCATGGTAAGCAT+AGG | 0.648009 | 8.1:+82982762 | None:intergenic |
| GATTCTCTGATAGTAACTTG+AGG | 0.654106 | 8.1:+82981385 | None:intergenic |
| TCATATTGATGAAAAGAGGA+GGG | 0.656177 | 8.1:-82980615 | MS.gene072227:CDS |
| GGAGGGCAACTGATCTATGG+AGG | 0.656512 | 8.1:-82980598 | MS.gene072227:CDS |
| TGGGGCTACCAGGAGTCACA+GGG | 0.656743 | 8.1:-82981113 | MS.gene072227:CDS |
| GATGATGCTGCACTTTACGT+TGG | 0.657673 | 8.1:-82983320 | MS.gene072227:CDS |
| CAATACAGCCAGACCCAATG+TGG | 0.659119 | 8.1:+82982490 | None:intergenic |
| ATGAATAGAGGTGTATCTGG+AGG | 0.665155 | 8.1:-82985851 | MS.gene072227:CDS |
| TCTATGGAGGACCTTTAGGT+CGG | 0.668230 | 8.1:-82980585 | MS.gene072227:CDS |
| CAGCAAAATCCATTCCAAGA+CGG | 0.669372 | 8.1:+82980304 | None:intergenic |
| ATCAACCTCAGCCAGGACAC+AGG | 0.670546 | 8.1:-82988688 | MS.gene072227:CDS |
| TATTATGCAAACCTTTACAG+AGG | 0.671150 | 8.1:-82988714 | MS.gene072227:CDS |
| GTCTCAAGGATGCTATTGTG+GGG | 0.674817 | 8.1:-82981131 | MS.gene072227:CDS |
| AACAAATCACTACTTCCTGG+TGG | 0.681205 | 8.1:+82980086 | None:intergenic |
| AATTCAACAATGTGTTCACG+TGG | 0.683887 | 8.1:+82984645 | None:intergenic |
| GAAGATGCAACTGAATTGGA+GGG | 0.695827 | 8.1:-82982207 | MS.gene072227:CDS |
| TTAGCAGGAAGAAAGACTGG+TGG | 0.702316 | 8.1:-82981505 | MS.gene072227:CDS |
| TAAACGAACCAAGACTCGTG+AGG | 0.704604 | 8.1:-82982173 | MS.gene072227:CDS |
| GAGGGTCAAGTTGTGTACCA+AGG | 0.716531 | 8.1:-82984669 | MS.gene072227:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 82978729 | 82988932 | 82978729 | ID=MS.gene072227 |
| chr8.1 | mRNA | 82978729 | 82988932 | 82978729 | ID=MS.gene072227.t1;Parent=MS.gene072227 |
| chr8.1 | exon | 82988557 | 82988932 | 82988557 | ID=MS.gene072227.t1.exon1;Parent=MS.gene072227.t1 |
| chr8.1 | CDS | 82988557 | 82988932 | 82988557 | ID=cds.MS.gene072227.t1;Parent=MS.gene072227.t1 |
| chr8.1 | exon | 82987347 | 82987556 | 82987347 | ID=MS.gene072227.t1.exon2;Parent=MS.gene072227.t1 |
| chr8.1 | CDS | 82987347 | 82987556 | 82987347 | ID=cds.MS.gene072227.t1;Parent=MS.gene072227.t1 |
| chr8.1 | exon | 82987011 | 82987095 | 82987011 | ID=MS.gene072227.t1.exon3;Parent=MS.gene072227.t1 |
| chr8.1 | CDS | 82987011 | 82987095 | 82987011 | ID=cds.MS.gene072227.t1;Parent=MS.gene072227.t1 |
| chr8.1 | exon | 82986681 | 82986840 | 82986681 | ID=MS.gene072227.t1.exon4;Parent=MS.gene072227.t1 |
| chr8.1 | CDS | 82986681 | 82986840 | 82986681 | ID=cds.MS.gene072227.t1;Parent=MS.gene072227.t1 |
| chr8.1 | exon | 82986491 | 82986567 | 82986491 | ID=MS.gene072227.t1.exon5;Parent=MS.gene072227.t1 |
| chr8.1 | CDS | 82986491 | 82986567 | 82986491 | ID=cds.MS.gene072227.t1;Parent=MS.gene072227.t1 |
| chr8.1 | exon | 82986333 | 82986386 | 82986333 | ID=MS.gene072227.t1.exon6;Parent=MS.gene072227.t1 |
| chr8.1 | CDS | 82986333 | 82986386 | 82986333 | ID=cds.MS.gene072227.t1;Parent=MS.gene072227.t1 |
| chr8.1 | exon | 82985828 | 82985918 | 82985828 | ID=MS.gene072227.t1.exon7;Parent=MS.gene072227.t1 |
| chr8.1 | CDS | 82985828 | 82985918 | 82985828 | ID=cds.MS.gene072227.t1;Parent=MS.gene072227.t1 |
| chr8.1 | exon | 82984584 | 82984885 | 82984584 | ID=MS.gene072227.t1.exon8;Parent=MS.gene072227.t1 |
| chr8.1 | CDS | 82984584 | 82984885 | 82984584 | ID=cds.MS.gene072227.t1;Parent=MS.gene072227.t1 |
| chr8.1 | exon | 82982931 | 82983690 | 82982931 | ID=MS.gene072227.t1.exon9;Parent=MS.gene072227.t1 |
| chr8.1 | CDS | 82982931 | 82983690 | 82982931 | ID=cds.MS.gene072227.t1;Parent=MS.gene072227.t1 |
| chr8.1 | exon | 82982723 | 82982832 | 82982723 | ID=MS.gene072227.t1.exon10;Parent=MS.gene072227.t1 |
| chr8.1 | CDS | 82982723 | 82982832 | 82982723 | ID=cds.MS.gene072227.t1;Parent=MS.gene072227.t1 |
| chr8.1 | exon | 82982375 | 82982531 | 82982375 | ID=MS.gene072227.t1.exon11;Parent=MS.gene072227.t1 |
| chr8.1 | CDS | 82982375 | 82982531 | 82982375 | ID=cds.MS.gene072227.t1;Parent=MS.gene072227.t1 |
| chr8.1 | exon | 82982112 | 82982261 | 82982112 | ID=MS.gene072227.t1.exon12;Parent=MS.gene072227.t1 |
| chr8.1 | CDS | 82982112 | 82982261 | 82982112 | ID=cds.MS.gene072227.t1;Parent=MS.gene072227.t1 |
| chr8.1 | exon | 82981754 | 82981911 | 82981754 | ID=MS.gene072227.t1.exon13;Parent=MS.gene072227.t1 |
| chr8.1 | CDS | 82981754 | 82981911 | 82981754 | ID=cds.MS.gene072227.t1;Parent=MS.gene072227.t1 |
| chr8.1 | exon | 82981327 | 82981659 | 82981327 | ID=MS.gene072227.t1.exon14;Parent=MS.gene072227.t1 |
| chr8.1 | CDS | 82981327 | 82981659 | 82981327 | ID=cds.MS.gene072227.t1;Parent=MS.gene072227.t1 |
| chr8.1 | exon | 82980903 | 82981193 | 82980903 | ID=MS.gene072227.t1.exon15;Parent=MS.gene072227.t1 |
| chr8.1 | CDS | 82980903 | 82981193 | 82980903 | ID=cds.MS.gene072227.t1;Parent=MS.gene072227.t1 |
| chr8.1 | exon | 82980555 | 82980638 | 82980555 | ID=MS.gene072227.t1.exon16;Parent=MS.gene072227.t1 |
| chr8.1 | CDS | 82980555 | 82980638 | 82980555 | ID=cds.MS.gene072227.t1;Parent=MS.gene072227.t1 |
| chr8.1 | exon | 82980276 | 82980409 | 82980276 | ID=MS.gene072227.t1.exon17;Parent=MS.gene072227.t1 |
| chr8.1 | CDS | 82980276 | 82980409 | 82980276 | ID=cds.MS.gene072227.t1;Parent=MS.gene072227.t1 |
| chr8.1 | exon | 82979918 | 82980145 | 82979918 | ID=MS.gene072227.t1.exon18;Parent=MS.gene072227.t1 |
| chr8.1 | CDS | 82979918 | 82980145 | 82979918 | ID=cds.MS.gene072227.t1;Parent=MS.gene072227.t1 |
| chr8.1 | exon | 82979647 | 82979818 | 82979647 | ID=MS.gene072227.t1.exon19;Parent=MS.gene072227.t1 |
| chr8.1 | CDS | 82979647 | 82979818 | 82979647 | ID=cds.MS.gene072227.t1;Parent=MS.gene072227.t1 |
| chr8.1 | exon | 82979290 | 82979544 | 82979290 | ID=MS.gene072227.t1.exon20;Parent=MS.gene072227.t1 |
| chr8.1 | CDS | 82979290 | 82979544 | 82979290 | ID=cds.MS.gene072227.t1;Parent=MS.gene072227.t1 |
| chr8.1 | exon | 82978729 | 82979001 | 82978729 | ID=MS.gene072227.t1.exon21;Parent=MS.gene072227.t1 |
| chr8.1 | CDS | 82978729 | 82979001 | 82978729 | ID=cds.MS.gene072227.t1;Parent=MS.gene072227.t1 |
| Gene Sequence |
| Protein sequence |
