Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072233.t1 | RHN39132.1 | 82.8 | 268 | 46 | 0 | 1 | 268 | 1 | 268 | 9.10E-122 | 446.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072233.t1 | Q9LQM1 | 27.6 | 272 | 161 | 9 | 14 | 268 | 170 | 422 | 5.6e-11 | 69.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072233.t1 | G7LGM4 | 82.8 | 268 | 46 | 0 | 1 | 268 | 184 | 451 | 6.6e-122 | 446.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072003 | MS.gene072233 | PPI |
| MS.gene072000 | MS.gene072233 | PPI |
| MS.gene072233 | MS.gene51793 | PPI |
| MS.gene065373 | MS.gene072233 | PPI |
| MS.gene072233 | MS.gene045772 | PPI |
| MS.gene071257 | MS.gene072233 | PPI |
| MS.gene54960 | MS.gene072233 | PPI |
| MS.gene033694 | MS.gene072233 | PPI |
| MS.gene072233 | MS.gene51795 | PPI |
| MS.gene072233 | MS.gene002112 | PPI |
| MS.gene072233 | MS.gene033695 | PPI |
| MS.gene072233 | MS.gene54959 | PPI |
| MS.gene01653 | MS.gene072233 | PPI |
| MS.gene047137 | MS.gene072233 | PPI |
| MS.gene047136 | MS.gene072233 | PPI |
| MS.gene78164 | MS.gene072233 | PPI |
| MS.gene072233 | MS.gene024262 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072233.t1 | MTR_8g014260 | 82.836 | 268 | 46 | 0 | 1 | 268 | 184 | 451 | 1.07e-157 | 446 |
| MS.gene072233.t1 | MTR_4g024710 | 75.465 | 269 | 64 | 2 | 1 | 268 | 80 | 347 | 3.40e-145 | 410 |
| MS.gene072233.t1 | MTR_4g024745 | 73.016 | 252 | 66 | 2 | 1 | 251 | 34 | 284 | 3.34e-124 | 355 |
| MS.gene072233.t1 | MTR_8g014210 | 62.931 | 232 | 85 | 1 | 37 | 268 | 1 | 231 | 3.56e-93 | 274 |
| MS.gene072233.t1 | MTR_8g445780 | 65.000 | 220 | 76 | 1 | 1 | 220 | 171 | 389 | 1.12e-89 | 271 |
| MS.gene072233.t1 | MTR_5g092960 | 47.080 | 274 | 126 | 7 | 9 | 267 | 192 | 461 | 3.02e-64 | 208 |
| MS.gene072233.t1 | MTR_8g077460 | 53.744 | 227 | 91 | 7 | 48 | 268 | 157 | 375 | 7.02e-62 | 199 |
| MS.gene072233.t1 | MTR_2g083840 | 45.489 | 266 | 136 | 6 | 10 | 268 | 194 | 457 | 5.70e-60 | 197 |
| MS.gene072233.t1 | MTR_8g062270 | 43.346 | 263 | 133 | 7 | 15 | 267 | 197 | 453 | 4.25e-56 | 186 |
| MS.gene072233.t1 | MTR_8g058970 | 44.203 | 276 | 137 | 8 | 7 | 268 | 205 | 477 | 3.64e-55 | 184 |
| MS.gene072233.t1 | MTR_8g467800 | 42.379 | 269 | 135 | 9 | 15 | 268 | 190 | 453 | 5.24e-54 | 181 |
| MS.gene072233.t1 | MTR_8g468810 | 41.392 | 273 | 146 | 7 | 7 | 268 | 194 | 463 | 9.86e-54 | 181 |
| MS.gene072233.t1 | MTR_8g468840 | 42.085 | 259 | 137 | 7 | 15 | 265 | 194 | 447 | 5.50e-49 | 168 |
| MS.gene072233.t1 | MTR_8g469020 | 38.722 | 266 | 157 | 6 | 7 | 268 | 188 | 451 | 4.53e-45 | 157 |
| MS.gene072233.t1 | MTR_8g062010 | 38.372 | 258 | 144 | 7 | 17 | 268 | 182 | 430 | 8.92e-44 | 154 |
| MS.gene072233.t1 | MTR_8g058965 | 39.768 | 259 | 144 | 6 | 17 | 268 | 203 | 456 | 9.02e-43 | 152 |
| MS.gene072233.t1 | MTR_4g032730 | 37.500 | 280 | 140 | 7 | 15 | 267 | 195 | 466 | 1.54e-42 | 151 |
| MS.gene072233.t1 | MTR_8g070950 | 39.231 | 260 | 139 | 8 | 17 | 268 | 186 | 434 | 2.27e-42 | 150 |
| MS.gene072233.t1 | MTR_8g468760 | 39.313 | 262 | 117 | 6 | 15 | 267 | 190 | 418 | 1.11e-41 | 148 |
| MS.gene072233.t1 | MTR_8g062080 | 36.641 | 262 | 142 | 8 | 17 | 268 | 198 | 445 | 1.88e-40 | 145 |
| MS.gene072233.t1 | MTR_8g062310 | 37.218 | 266 | 147 | 9 | 7 | 268 | 179 | 428 | 1.64e-39 | 142 |
| MS.gene072233.t1 | MTR_8g014160 | 38.077 | 260 | 99 | 6 | 15 | 268 | 222 | 425 | 3.65e-39 | 141 |
| MS.gene072233.t1 | MTR_5g092960 | 48.619 | 181 | 83 | 3 | 9 | 180 | 192 | 371 | 6.51e-38 | 137 |
| MS.gene072233.t1 | MTR_8g062300 | 33.333 | 273 | 150 | 6 | 17 | 268 | 216 | 477 | 8.18e-33 | 125 |
| MS.gene072233.t1 | MTR_8g014230 | 61.111 | 90 | 33 | 2 | 179 | 268 | 17 | 104 | 5.16e-30 | 108 |
| MS.gene072233.t1 | MTR_2g086020 | 48.696 | 115 | 57 | 2 | 156 | 268 | 201 | 315 | 3.89e-28 | 110 |
| MS.gene072233.t1 | MTR_4g050250 | 40.000 | 205 | 113 | 6 | 18 | 213 | 216 | 419 | 8.27e-28 | 110 |
| MS.gene072233.t1 | MTR_8g468810 | 40.556 | 180 | 99 | 4 | 7 | 180 | 194 | 371 | 4.29e-27 | 108 |
| MS.gene072233.t1 | MTR_5g084070 | 31.343 | 268 | 160 | 10 | 10 | 265 | 169 | 424 | 1.15e-23 | 99.4 |
| MS.gene072233.t1 | MTR_5g080710 | 31.439 | 264 | 160 | 10 | 15 | 267 | 200 | 453 | 6.30e-18 | 83.2 |
| MS.gene072233.t1 | MTR_8g468810 | 37.956 | 137 | 80 | 2 | 7 | 143 | 194 | 325 | 1.54e-17 | 81.3 |
| MS.gene072233.t1 | MTR_8g467800 | 44.628 | 121 | 60 | 4 | 15 | 129 | 190 | 309 | 2.85e-17 | 80.5 |
| MS.gene072233.t1 | MTR_8g468810 | 40.517 | 116 | 68 | 1 | 7 | 122 | 194 | 308 | 3.64e-17 | 80.1 |
| MS.gene072233.t1 | MTR_8g468810 | 40.517 | 116 | 68 | 1 | 7 | 122 | 194 | 308 | 4.22e-17 | 80.1 |
| MS.gene072233.t1 | MTR_7g098510 | 33.636 | 110 | 71 | 1 | 161 | 268 | 282 | 391 | 5.65e-12 | 65.5 |
| MS.gene072233.t1 | MTR_7g056433 | 30.597 | 134 | 88 | 2 | 140 | 268 | 256 | 389 | 6.05e-12 | 65.5 |
| MS.gene072233.t1 | MTR_5g008950 | 34.127 | 126 | 77 | 2 | 147 | 268 | 242 | 365 | 6.88e-12 | 65.1 |
| MS.gene072233.t1 | MTR_8g467790 | 48.101 | 79 | 39 | 2 | 138 | 214 | 417 | 495 | 1.07e-11 | 65.1 |
| MS.gene072233.t1 | MTR_3g115430 | 32.174 | 115 | 74 | 2 | 155 | 268 | 14 | 125 | 5.08e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072233.t1 | AT4G26340 | 27.636 | 275 | 174 | 10 | 4 | 268 | 160 | 419 | 1.21e-18 | 85.1 |
| MS.gene072233.t1 | AT5G38570 | 28.736 | 261 | 162 | 11 | 15 | 267 | 131 | 375 | 1.63e-14 | 73.2 |
| MS.gene072233.t1 | AT5G56390 | 27.273 | 275 | 174 | 9 | 7 | 267 | 162 | 424 | 3.94e-14 | 72.0 |
| MS.gene072233.t1 | AT5G56325 | 27.341 | 267 | 167 | 8 | 16 | 268 | 11 | 264 | 1.60e-13 | 68.9 |
| MS.gene072233.t1 | AT1G32375 | 27.574 | 272 | 161 | 9 | 14 | 268 | 170 | 422 | 9.04e-13 | 68.2 |
| MS.gene072233.t1 | AT1G32375 | 27.574 | 272 | 161 | 9 | 14 | 268 | 170 | 422 | 9.04e-13 | 68.2 |
| MS.gene072233.t1 | AT3G26920 | 27.692 | 260 | 168 | 12 | 18 | 267 | 90 | 339 | 1.10e-12 | 67.4 |
| MS.gene072233.t1 | AT3G26920 | 27.692 | 260 | 168 | 12 | 18 | 267 | 90 | 339 | 1.10e-12 | 67.4 |
| MS.gene072233.t1 | AT5G56420 | 28.095 | 210 | 134 | 7 | 63 | 268 | 226 | 422 | 5.72e-12 | 65.9 |
| MS.gene072233.t1 | AT5G56420 | 28.095 | 210 | 134 | 7 | 63 | 268 | 226 | 422 | 5.72e-12 | 65.9 |
| MS.gene072233.t1 | AT5G56420 | 28.095 | 210 | 134 | 7 | 63 | 268 | 226 | 422 | 5.72e-12 | 65.9 |
| MS.gene072233.t1 | AT3G49030 | 29.389 | 262 | 161 | 13 | 18 | 267 | 191 | 440 | 2.74e-11 | 63.5 |
Find 45 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCAAACTCATTATGAATT+TGG | 0.092106 | 8.1:+83113857 | None:intergenic |
| CTGACCTTTATTCAATTTAA+AGG | 0.136086 | 8.1:-83113061 | MS.gene072233:CDS |
| ATCCAAATTCATAATGAGTT+TGG | 0.225296 | 8.1:-83113859 | MS.gene072233:CDS |
| TCCAAATTCATAATGAGTTT+GGG | 0.261434 | 8.1:-83113858 | MS.gene072233:CDS |
| CGTTTAGAGCTCATTCTTCC+CGG | 0.281650 | 8.1:-83113405 | MS.gene072233:CDS |
| AGATCCAGAGCTTCGATGTT+TGG | 0.329402 | 8.1:+83113943 | None:intergenic |
| GATCCAGAGCTTCGATGTTT+GGG | 0.337033 | 8.1:+83113944 | None:intergenic |
| AAATCCTTTAAATTGAATAA+AGG | 0.339709 | 8.1:+83113057 | None:intergenic |
| AGGTGGGATACGAGACAATT+AGG | 0.358859 | 8.1:+83113082 | None:intergenic |
| AAACATCGATGAATTTGTAT+TGG | 0.386122 | 8.1:+83113788 | None:intergenic |
| GCCTCCCAGCCTCCTTGAAA+AGG | 0.392395 | 8.1:-83113888 | MS.gene072233:CDS |
| AAGCAAGCAAAGCAAAGAAT+TGG | 0.396582 | 8.1:+83113374 | None:intergenic |
| TGTGGTGCCCATCCTAAAAT+TGG | 0.409683 | 8.1:+83113115 | None:intergenic |
| ATTCAATTTAAAGGATTTCA+AGG | 0.418336 | 8.1:-83113052 | MS.gene072233:CDS |
| CTGCCCAAACATCGAAGCTC+TGG | 0.446791 | 8.1:-83113947 | MS.gene072233:CDS |
| TATTGCTGCTGATATCTCCT+TGG | 0.465800 | 8.1:-83112963 | MS.gene072233:CDS |
| TCAAAAGTGCCAAGGGCCTC+AGG | 0.468641 | 8.1:-83112905 | MS.gene072233:CDS |
| CTTTAAATTGAATAAAGGTC+AGG | 0.486856 | 8.1:+83113062 | None:intergenic |
| CTTCGATGTTTGGGCAGCCA+TGG | 0.487175 | 8.1:+83113953 | None:intergenic |
| ATGTTAAGATGCTCAAGATC+TGG | 0.493184 | 8.1:+83113814 | None:intergenic |
| GTGGACGAACAGTGGCTGTT+TGG | 0.504750 | 8.1:-83113471 | MS.gene072233:intron |
| GAGGCACTTCCACGTTATTG+AGG | 0.510784 | 8.1:+83113992 | None:intergenic |
| GTGTTGAGAAGCTTGAGTAA+AGG | 0.520278 | 8.1:+83113691 | None:intergenic |
| CGGCACATTCCTGAGGCCCT+TGG | 0.521523 | 8.1:+83112896 | None:intergenic |
| GTTTAGAGCTCATTCTTCCC+GGG | 0.534682 | 8.1:-83113404 | MS.gene072233:CDS |
| CAAAGAATTGGAGTTAAACC+CGG | 0.536955 | 8.1:+83113386 | None:intergenic |
| CCAAATTCATAATGAGTTTG+GGG | 0.539232 | 8.1:-83113857 | MS.gene072233:CDS |
| CGATGTTTGGGCAGCCATGG+AGG | 0.545736 | 8.1:+83113956 | None:intergenic |
| TAAATTGAATAAAGGTCAGG+TGG | 0.546131 | 8.1:+83113065 | None:intergenic |
| ACAAAACATTTAATGTTGAG+TGG | 0.554889 | 8.1:-83113658 | MS.gene072233:CDS |
| AGCTTCTCAACACTCTCTCC+CGG | 0.563869 | 8.1:-83113681 | MS.gene072233:CDS |
| TGGAGGAGTGCATTCAAAAG+AGG | 0.567731 | 8.1:+83113973 | None:intergenic |
| AAAGATTATCAAAAGTGCCA+AGG | 0.575577 | 8.1:-83112913 | MS.gene072233:CDS |
| AAAGAATTGGAGTTAAACCC+GGG | 0.596241 | 8.1:+83113387 | None:intergenic |
| AAGATTATCAAAAGTGCCAA+GGG | 0.611011 | 8.1:-83112912 | MS.gene072233:CDS |
| GCACTTCCACGTTATTGAGG+AGG | 0.629148 | 8.1:+83113995 | None:intergenic |
| CAACTCAGTCAAATGTAAGT+CGG | 0.631758 | 8.1:+83112876 | None:intergenic |
| AAATTGAATAAAGGTCAGGT+GGG | 0.634827 | 8.1:+83113066 | None:intergenic |
| GTTGAGTGGTTCAACAACCA+AGG | 0.648225 | 8.1:-83113644 | MS.gene072233:intron |
| TGTAAGTCGGCACATTCCTG+AGG | 0.666892 | 8.1:+83112889 | None:intergenic |
| TCTCAAAATTCAGAACAACA+AGG | 0.673538 | 8.1:-83113328 | MS.gene072233:intron |
| CATGAACAACTTTCACAATG+TGG | 0.679241 | 8.1:-83113761 | MS.gene072233:CDS |
| TCAACAAAATCATACGACAG+AGG | 0.700946 | 8.1:+83113715 | None:intergenic |
| AATTGACCTCCTCAATAACG+TGG | 0.702113 | 8.1:-83114001 | MS.gene072233:CDS |
| CAATTAGGAGCACTTGACTG+TGG | 0.704420 | 8.1:+83113097 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATCATGTTATATATT+GGG | + | chr8.1:83113698-83113717 | None:intergenic | 10.0% |
| !! | AAATCCTTTAAATTGAATAA+AGG | + | chr8.1:83113835-83113854 | None:intergenic | 15.0% |
| !! | GAATTAATCATGTTATATAT+TGG | + | chr8.1:83113699-83113718 | None:intergenic | 15.0% |
| !! | GTAATCTATTTCATAAAAAT+TGG | + | chr8.1:83113638-83113657 | None:intergenic | 15.0% |
| !! | ACTAAAATAAAACTTTACCT+TGG | + | chr8.1:83113265-83113284 | None:intergenic | 20.0% |
| !! | ATTCAATTTAAAGGATTTCA+AGG | - | chr8.1:83113837-83113856 | MS.gene072233:CDS | 20.0% |
| !! | ATTCTTGAAAAAATAGTTCA+CGG | + | chr8.1:83113450-83113469 | None:intergenic | 20.0% |
| !! | ATTTATAGATAGCTATAGTT+TGG | - | chr8.1:83113374-83113393 | MS.gene072233:CDS | 20.0% |
| !!! | GAATATCGTATTTTTTACTT+TGG | + | chr8.1:83113953-83113972 | None:intergenic | 20.0% |
| ! | AAACATCGATGAATTTGTAT+TGG | + | chr8.1:83113104-83113123 | None:intergenic | 25.0% |
| ! | AATCATGTTATATATTGGGT+GGG | + | chr8.1:83113694-83113713 | None:intergenic | 25.0% |
| ! | ACAAAACATTTAATGTTGAG+TGG | - | chr8.1:83113231-83113250 | MS.gene072233:intron | 25.0% |
| ! | ATCCAAATTCATAATGAGTT+TGG | - | chr8.1:83113030-83113049 | MS.gene072233:CDS | 25.0% |
| ! | CTGACCTTTATTCAATTTAA+AGG | - | chr8.1:83113828-83113847 | MS.gene072233:CDS | 25.0% |
| ! | CTTTAAATTGAATAAAGGTC+AGG | + | chr8.1:83113830-83113849 | None:intergenic | 25.0% |
| ! | TAATCATGTTATATATTGGG+TGG | + | chr8.1:83113695-83113714 | None:intergenic | 25.0% |
| ! | TCCAAATTCATAATGAGTTT+GGG | - | chr8.1:83113031-83113050 | MS.gene072233:CDS | 25.0% |
| ! | TTCTTGAAAAAATAGTTCAC+GGG | + | chr8.1:83113449-83113468 | None:intergenic | 25.0% |
| !! | TCAACATTAAATGTTTTGTC+CGG | + | chr8.1:83113230-83113249 | None:intergenic | 25.0% |
| AAATTGAATAAAGGTCAGGT+GGG | + | chr8.1:83113826-83113845 | None:intergenic | 30.0% | |
| ATCATGTTATATATTGGGTG+GGG | + | chr8.1:83113693-83113712 | None:intergenic | 30.0% | |
| CCAAATTCATAATGAGTTTG+GGG | - | chr8.1:83113032-83113051 | MS.gene072233:CDS | 30.0% | |
| TAAATTGAATAAAGGTCAGG+TGG | + | chr8.1:83113827-83113846 | None:intergenic | 30.0% | |
| TCTCAAAATTCAGAACAACA+AGG | - | chr8.1:83113561-83113580 | MS.gene072233:intron | 30.0% | |
| TCTTGAAAAAATAGTTCACG+GGG | + | chr8.1:83113448-83113467 | None:intergenic | 30.0% | |
| ! | ATTTCAAGGATTTTCAGATG+AGG | - | chr8.1:83113851-83113870 | MS.gene072233:CDS | 30.0% |
| ! | CAACATTAAATGTTTTGTCC+GGG | + | chr8.1:83113229-83113248 | None:intergenic | 30.0% |
| !! | AAAGATTATCAAAAGTGCCA+AGG | - | chr8.1:83113976-83113995 | MS.gene072233:CDS | 30.0% |
| !! | AAGATTATCAAAAGTGCCAA+GGG | - | chr8.1:83113977-83113996 | MS.gene072233:CDS | 30.0% |
| !! | CTAATTGCTACTTGATAATG+TGG | - | chr8.1:83113399-83113418 | MS.gene072233:CDS | 30.0% |
| !!! | GTATTTTTTACTTTGGTCCA+AGG | + | chr8.1:83113946-83113965 | None:intergenic | 30.0% |
| !!! | TCACTTTTTATCTGATAGCT+TGG | - | chr8.1:83112969-83112988 | MS.gene072233:CDS | 30.0% |
| AAAGAATTGGAGTTAAACCC+GGG | + | chr8.1:83113505-83113524 | None:intergenic | 35.0% | |
| AAGCAAGCAAAGCAAAGAAT+TGG | + | chr8.1:83113518-83113537 | None:intergenic | 35.0% | |
| ATGTTAAGATGCTCAAGATC+TGG | + | chr8.1:83113078-83113097 | None:intergenic | 35.0% | |
| CAAAGAATTGGAGTTAAACC+CGG | + | chr8.1:83113506-83113525 | None:intergenic | 35.0% | |
| CATGAACAACTTTCACAATG+TGG | - | chr8.1:83113128-83113147 | MS.gene072233:intron | 35.0% | |
| CCCCAAACTCATTATGAATT+TGG | + | chr8.1:83113035-83113054 | None:intergenic | 35.0% | |
| TCAACAAAATCATACGACAG+AGG | + | chr8.1:83113177-83113196 | None:intergenic | 35.0% | |
| ! | GTTCAGCATGTTTTGCAAAA+AGG | - | chr8.1:83113882-83113901 | MS.gene072233:CDS | 35.0% |
| ! | TTGGATTTTCAGCCTTTTCA+AGG | + | chr8.1:83113016-83113035 | None:intergenic | 35.0% |
| !! | AACAGTCACCAATTTTAGGA+TGG | - | chr8.1:83113766-83113785 | MS.gene072233:CDS | 35.0% |
| !! | ATTTTGAGAACTTGAAGCAC+AGG | + | chr8.1:83113550-83113569 | None:intergenic | 35.0% |
| !!! | ACAGTCACCAATTTTAGGAT+GGG | - | chr8.1:83113767-83113786 | MS.gene072233:CDS | 35.0% |
| !!! | TCAAGTCTTTTTTTGCCTAC+AGG | - | chr8.1:83113743-83113762 | MS.gene072233:CDS | 35.0% |
| AATTGACCTCCTCAATAACG+TGG | - | chr8.1:83112888-83112907 | MS.gene072233:CDS | 40.0% | |
| GTGTTGAGAAGCTTGAGTAA+AGG | + | chr8.1:83113201-83113220 | None:intergenic | 40.0% | |
| TATTGCTGCTGATATCTCCT+TGG | - | chr8.1:83113926-83113945 | MS.gene072233:CDS | 40.0% | |
| ! | AAATTGGTGACTGTTCCTGT+AGG | + | chr8.1:83113761-83113780 | None:intergenic | 40.0% |
| ! | CAGGAACAGTCACCAATTTT+AGG | - | chr8.1:83113762-83113781 | MS.gene072233:CDS | 40.0% |
| !! | GATTTTCAGCCTTTTCAAGG+AGG | + | chr8.1:83113013-83113032 | None:intergenic | 40.0% |
| !! | TTGATAATGTGGACGAACAG+TGG | - | chr8.1:83113410-83113429 | MS.gene072233:CDS | 40.0% |
| AGATCCAGAGCTTCGATGTT+TGG | + | chr8.1:83112949-83112968 | None:intergenic | 45.0% | |
| AGGTGGGATACGAGACAATT+AGG | + | chr8.1:83113810-83113829 | None:intergenic | 45.0% | |
| GATCCAGAGCTTCGATGTTT+GGG | + | chr8.1:83112948-83112967 | None:intergenic | 45.0% | |
| GTTGAGTGGTTCAACAACCA+AGG | - | chr8.1:83113245-83113264 | MS.gene072233:intron | 45.0% | |
| TGTGGTGCCCATCCTAAAAT+TGG | + | chr8.1:83113777-83113796 | None:intergenic | 45.0% | |
| ! | CGTTTAGAGCTCATTCTTCC+CGG | - | chr8.1:83113484-83113503 | MS.gene072233:intron | 45.0% |
| ! | CTTTTGAATGCACTCCTCCA+TGG | - | chr8.1:83112919-83112938 | MS.gene072233:CDS | 45.0% |
| ! | GTTTAGAGCTCATTCTTCCC+GGG | - | chr8.1:83113485-83113504 | MS.gene072233:intron | 45.0% |
| ! | TGGAGGAGTGCATTCAAAAG+AGG | + | chr8.1:83112919-83112938 | None:intergenic | 45.0% |
| !! | CAATTAGGAGCACTTGACTG+TGG | + | chr8.1:83113795-83113814 | None:intergenic | 45.0% |
| AGCTTCTCAACACTCTCTCC+CGG | - | chr8.1:83113208-83113227 | MS.gene072233:intron | 50.0% | |
| GCACTTCCACGTTATTGAGG+AGG | + | chr8.1:83112897-83112916 | None:intergenic | 50.0% | |
| TGTAAGTCGGCACATTCCTG+AGG | + | chr8.1:83114003-83114022 | None:intergenic | 50.0% | |
| ! | GAGGCACTTCCACGTTATTG+AGG | + | chr8.1:83112900-83112919 | None:intergenic | 50.0% |
| !! | TCAGCCTTTTCAAGGAGGCT+GGG | + | chr8.1:83113008-83113027 | None:intergenic | 50.0% |
| !! | TTCAGCCTTTTCAAGGAGGC+TGG | + | chr8.1:83113009-83113028 | None:intergenic | 50.0% |
| CTGCCCAAACATCGAAGCTC+TGG | - | chr8.1:83112942-83112961 | MS.gene072233:CDS | 55.0% | |
| CTTCGATGTTTGGGCAGCCA+TGG | + | chr8.1:83112939-83112958 | None:intergenic | 55.0% | |
| GTGGACGAACAGTGGCTGTT+TGG | - | chr8.1:83113418-83113437 | MS.gene072233:CDS | 55.0% | |
| !! | TCAAAAGTGCCAAGGGCCTC+AGG | - | chr8.1:83113984-83114003 | MS.gene072233:CDS | 55.0% |
| CGATGTTTGGGCAGCCATGG+AGG | + | chr8.1:83112936-83112955 | None:intergenic | 60.0% | |
| GCCTCCCAGCCTCCTTGAAA+AGG | - | chr8.1:83113001-83113020 | MS.gene072233:CDS | 60.0% | |
| !! | GCCTTTTCAAGGAGGCTGGG+AGG | + | chr8.1:83113005-83113024 | None:intergenic | 60.0% |
| CGGCACATTCCTGAGGCCCT+TGG | + | chr8.1:83113996-83114015 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 83112880 | 83114031 | 83112880 | ID=MS.gene072233 |
| chr8.1 | mRNA | 83112880 | 83114031 | 83112880 | ID=MS.gene072233.t1;Parent=MS.gene072233 |
| chr8.1 | exon | 83113645 | 83114031 | 83113645 | ID=MS.gene072233.t1.exon1;Parent=MS.gene072233.t1 |
| chr8.1 | CDS | 83113645 | 83114031 | 83113645 | ID=cds.MS.gene072233.t1;Parent=MS.gene072233.t1 |
| chr8.1 | exon | 83113329 | 83113481 | 83113329 | ID=MS.gene072233.t1.exon2;Parent=MS.gene072233.t1 |
| chr8.1 | CDS | 83113329 | 83113481 | 83113329 | ID=cds.MS.gene072233.t1;Parent=MS.gene072233.t1 |
| chr8.1 | exon | 83112880 | 83113146 | 83112880 | ID=MS.gene072233.t1.exon3;Parent=MS.gene072233.t1 |
| chr8.1 | CDS | 83112880 | 83113146 | 83112880 | ID=cds.MS.gene072233.t1;Parent=MS.gene072233.t1 |
| Gene Sequence |
| Protein sequence |
