Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072237.t1 | AET01504.2 | 94.5 | 292 | 16 | 0 | 15 | 306 | 160 | 451 | 7.90E-154 | 553.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072237.t1 | Q8H1R7 | 29.0 | 293 | 184 | 9 | 24 | 306 | 141 | 419 | 2.2e-19 | 97.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072237.t1 | G7LGM4 | 94.5 | 292 | 16 | 0 | 15 | 306 | 160 | 451 | 5.7e-154 | 553.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072003 | MS.gene072237 | PPI |
| MS.gene002112 | MS.gene072237 | PPI |
| MS.gene072237 | MS.gene024262 | PPI |
| MS.gene01653 | MS.gene072237 | PPI |
| MS.gene072237 | MS.gene51795 | PPI |
| MS.gene047137 | MS.gene072237 | PPI |
| MS.gene54959 | MS.gene072237 | PPI |
| MS.gene047136 | MS.gene072237 | PPI |
| MS.gene78164 | MS.gene072237 | PPI |
| MS.gene072237 | MS.gene033695 | PPI |
| MS.gene045772 | MS.gene072237 | PPI |
| MS.gene072000 | MS.gene072237 | PPI |
| MS.gene065373 | MS.gene072237 | PPI |
| MS.gene51793 | MS.gene072237 | PPI |
| MS.gene071257 | MS.gene072237 | PPI |
| MS.gene54960 | MS.gene072237 | PPI |
| MS.gene033694 | MS.gene072237 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072237.t1 | MTR_8g014260 | 94.521 | 292 | 16 | 0 | 15 | 306 | 160 | 451 | 0.0 | 553 |
| MS.gene072237.t1 | MTR_4g024710 | 74.828 | 290 | 71 | 2 | 18 | 306 | 59 | 347 | 5.35e-153 | 432 |
| MS.gene072237.t1 | MTR_4g024745 | 73.993 | 273 | 69 | 2 | 18 | 289 | 13 | 284 | 2.98e-135 | 385 |
| MS.gene072237.t1 | MTR_8g445780 | 65.702 | 242 | 82 | 1 | 18 | 259 | 150 | 390 | 1.08e-100 | 301 |
| MS.gene072237.t1 | MTR_8g014210 | 61.207 | 232 | 89 | 1 | 75 | 306 | 1 | 231 | 2.53e-87 | 261 |
| MS.gene072237.t1 | MTR_8g077460 | 52.326 | 258 | 105 | 8 | 56 | 306 | 129 | 375 | 1.93e-65 | 210 |
| MS.gene072237.t1 | MTR_2g083840 | 45.608 | 296 | 151 | 7 | 18 | 306 | 165 | 457 | 5.29e-65 | 211 |
| MS.gene072237.t1 | MTR_5g092960 | 48.175 | 274 | 123 | 7 | 47 | 305 | 192 | 461 | 1.08e-62 | 205 |
| MS.gene072237.t1 | MTR_8g062270 | 43.144 | 299 | 152 | 8 | 18 | 305 | 162 | 453 | 1.17e-61 | 202 |
| MS.gene072237.t1 | MTR_8g058970 | 45.545 | 303 | 147 | 9 | 18 | 306 | 179 | 477 | 2.55e-61 | 202 |
| MS.gene072237.t1 | MTR_8g468810 | 43.667 | 300 | 154 | 9 | 18 | 306 | 168 | 463 | 3.66e-61 | 201 |
| MS.gene072237.t1 | MTR_8g467800 | 40.532 | 301 | 161 | 8 | 20 | 306 | 157 | 453 | 4.48e-58 | 193 |
| MS.gene072237.t1 | MTR_8g468840 | 40.816 | 294 | 162 | 7 | 18 | 303 | 158 | 447 | 3.73e-52 | 177 |
| MS.gene072237.t1 | MTR_8g468760 | 40.000 | 295 | 134 | 7 | 20 | 305 | 158 | 418 | 3.09e-47 | 164 |
| MS.gene072237.t1 | MTR_8g062010 | 39.236 | 288 | 161 | 9 | 22 | 306 | 154 | 430 | 4.01e-47 | 164 |
| MS.gene072237.t1 | MTR_4g032730 | 37.778 | 315 | 161 | 7 | 18 | 305 | 160 | 466 | 2.50e-46 | 162 |
| MS.gene072237.t1 | MTR_8g070950 | 38.144 | 291 | 161 | 9 | 22 | 306 | 157 | 434 | 2.34e-44 | 157 |
| MS.gene072237.t1 | MTR_8g014160 | 37.627 | 295 | 121 | 7 | 18 | 306 | 188 | 425 | 5.39e-44 | 155 |
| MS.gene072237.t1 | MTR_8g469020 | 36.364 | 308 | 171 | 10 | 18 | 306 | 150 | 451 | 2.21e-43 | 154 |
| MS.gene072237.t1 | MTR_8g062310 | 37.857 | 280 | 149 | 10 | 32 | 306 | 169 | 428 | 1.43e-42 | 152 |
| MS.gene072237.t1 | MTR_8g062080 | 37.248 | 298 | 157 | 12 | 20 | 306 | 167 | 445 | 3.09e-42 | 151 |
| MS.gene072237.t1 | MTR_8g058965 | 37.954 | 303 | 168 | 8 | 20 | 306 | 158 | 456 | 1.09e-41 | 150 |
| MS.gene072237.t1 | MTR_8g062300 | 33.746 | 323 | 172 | 9 | 5 | 306 | 176 | 477 | 1.40e-38 | 142 |
| MS.gene072237.t1 | MTR_8g468810 | 44.444 | 207 | 106 | 6 | 18 | 218 | 168 | 371 | 1.20e-37 | 137 |
| MS.gene072237.t1 | MTR_5g092960 | 48.066 | 181 | 84 | 3 | 47 | 218 | 192 | 371 | 5.51e-35 | 131 |
| MS.gene072237.t1 | MTR_4g050250 | 39.526 | 253 | 129 | 11 | 20 | 251 | 170 | 419 | 1.55e-31 | 122 |
| MS.gene072237.t1 | MTR_8g014230 | 63.750 | 80 | 28 | 1 | 217 | 296 | 17 | 95 | 2.32e-29 | 108 |
| MS.gene072237.t1 | MTR_2g086020 | 47.887 | 142 | 71 | 3 | 167 | 306 | 175 | 315 | 1.60e-27 | 109 |
| MS.gene072237.t1 | MTR_8g468810 | 40.244 | 164 | 92 | 3 | 18 | 181 | 168 | 325 | 2.77e-24 | 100 |
| MS.gene072237.t1 | MTR_8g468810 | 42.657 | 143 | 80 | 2 | 18 | 160 | 168 | 308 | 6.05e-24 | 99.8 |
| MS.gene072237.t1 | MTR_8g468810 | 41.333 | 150 | 86 | 2 | 18 | 167 | 168 | 315 | 7.69e-24 | 100 |
| MS.gene072237.t1 | MTR_8g467800 | 39.869 | 153 | 87 | 3 | 20 | 167 | 157 | 309 | 2.10e-22 | 95.9 |
| MS.gene072237.t1 | MTR_5g084070 | 30.935 | 278 | 168 | 10 | 38 | 303 | 159 | 424 | 3.05e-22 | 96.7 |
| MS.gene072237.t1 | MTR_5g080710 | 31.660 | 259 | 160 | 10 | 56 | 305 | 203 | 453 | 1.99e-16 | 79.7 |
| MS.gene072237.t1 | MTR_7g098510 | 36.364 | 132 | 78 | 3 | 181 | 306 | 260 | 391 | 8.12e-15 | 74.7 |
| MS.gene072237.t1 | MTR_7g056433 | 32.117 | 137 | 82 | 3 | 178 | 306 | 256 | 389 | 1.53e-13 | 70.9 |
| MS.gene072237.t1 | MTR_8g467790 | 30.342 | 234 | 119 | 10 | 20 | 247 | 295 | 490 | 9.79e-13 | 68.9 |
| MS.gene072237.t1 | MTR_3g115430 | 36.697 | 109 | 65 | 2 | 199 | 306 | 20 | 125 | 1.90e-12 | 63.5 |
| MS.gene072237.t1 | MTR_7g098570 | 34.266 | 143 | 80 | 4 | 168 | 301 | 251 | 388 | 9.79e-12 | 65.9 |
| MS.gene072237.t1 | MTR_4g056040 | 28.618 | 304 | 180 | 13 | 20 | 298 | 171 | 462 | 2.67e-11 | 64.3 |
| MS.gene072237.t1 | MTR_3g108150 | 27.599 | 279 | 147 | 10 | 34 | 305 | 156 | 386 | 8.05e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072237.t1 | AT4G26340 | 29.592 | 294 | 181 | 10 | 24 | 306 | 141 | 419 | 2.55e-21 | 93.6 |
| MS.gene072237.t1 | AT5G56390 | 27.653 | 311 | 189 | 9 | 18 | 305 | 127 | 424 | 8.47e-19 | 86.7 |
| MS.gene072237.t1 | AT5G38570 | 28.195 | 266 | 167 | 11 | 48 | 305 | 126 | 375 | 1.01e-15 | 77.4 |
| MS.gene072237.t1 | AT5G56820 | 29.180 | 305 | 159 | 16 | 26 | 303 | 149 | 423 | 6.33e-14 | 72.4 |
| MS.gene072237.t1 | AT3G26930 | 28.947 | 304 | 173 | 14 | 30 | 306 | 156 | 443 | 6.74e-14 | 72.0 |
| MS.gene072237.t1 | AT3G26930 | 28.947 | 304 | 173 | 14 | 30 | 306 | 111 | 398 | 7.22e-14 | 72.0 |
| MS.gene072237.t1 | AT5G56800 | 28.774 | 212 | 126 | 10 | 101 | 305 | 150 | 343 | 8.16e-13 | 68.6 |
| MS.gene072237.t1 | AT3G49030 | 29.010 | 293 | 174 | 13 | 30 | 305 | 165 | 440 | 9.65e-13 | 68.6 |
| MS.gene072237.t1 | AT3G26920 | 28.522 | 291 | 176 | 13 | 31 | 305 | 65 | 339 | 1.02e-12 | 68.2 |
| MS.gene072237.t1 | AT3G26920 | 28.522 | 291 | 176 | 13 | 31 | 305 | 65 | 339 | 1.02e-12 | 68.2 |
| MS.gene072237.t1 | AT5G56560 | 24.648 | 284 | 188 | 9 | 34 | 306 | 150 | 418 | 1.79e-12 | 67.8 |
| MS.gene072237.t1 | AT5G56325 | 26.866 | 268 | 171 | 8 | 52 | 306 | 9 | 264 | 3.79e-12 | 65.9 |
| MS.gene072237.t1 | AT5G56560 | 24.483 | 290 | 181 | 11 | 33 | 306 | 340 | 607 | 4.30e-12 | 67.0 |
| MS.gene072237.t1 | AT5G56420 | 28.041 | 296 | 162 | 14 | 23 | 306 | 166 | 422 | 1.55e-11 | 65.1 |
| MS.gene072237.t1 | AT5G56420 | 28.041 | 296 | 162 | 14 | 23 | 306 | 166 | 422 | 1.55e-11 | 65.1 |
| MS.gene072237.t1 | AT5G56420 | 28.041 | 296 | 162 | 14 | 23 | 306 | 166 | 422 | 1.55e-11 | 65.1 |
| MS.gene072237.t1 | AT4G13965 | 29.831 | 295 | 178 | 15 | 21 | 303 | 143 | 420 | 1.67e-11 | 65.1 |
| MS.gene072237.t1 | AT3G52690 | 28.283 | 297 | 181 | 11 | 26 | 305 | 16 | 297 | 2.73e-11 | 63.5 |
| MS.gene072237.t1 | AT5G38590 | 28.269 | 283 | 172 | 11 | 32 | 301 | 146 | 410 | 5.15e-11 | 63.5 |
| MS.gene072237.t1 | AT3G54910 | 27.090 | 299 | 187 | 10 | 18 | 306 | 96 | 373 | 7.52e-11 | 62.8 |
| MS.gene072237.t1 | AT3G54910 | 27.090 | 299 | 187 | 10 | 18 | 306 | 96 | 373 | 7.52e-11 | 62.8 |
| MS.gene072237.t1 | AT3G54910 | 27.090 | 299 | 187 | 10 | 18 | 306 | 96 | 373 | 7.52e-11 | 62.8 |
Find 57 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGGAACAGTCACCAATTT+TGG | 0.129657 | 8.3:-74400211 | MS.gene072237:intron |
| CTGACCTTTATTCAATTTAA+AGG | 0.136086 | 8.3:-74400144 | MS.gene072237:CDS |
| ACCCAAAGTCATTATCAATT+TGG | 0.182633 | 8.3:+74400932 | None:intergenic |
| TTCAGTGATGGTAAACTTAT+TGG | 0.182764 | 8.3:+74401108 | None:intergenic |
| ATTCAATTTAAAGGATTTCT+AGG | 0.235572 | 8.3:-74400135 | MS.gene072237:CDS |
| GTACTTCTTACTTTGGTCTA+AGG | 0.292149 | 8.3:+74400029 | None:intergenic |
| AATGCATTTCTCCACCCTAT+TGG | 0.312626 | 8.3:-74402236 | MS.gene072237:CDS |
| AGGTGGGATACGAGACATTT+AGG | 0.317122 | 8.3:+74400165 | None:intergenic |
| AGATCCAAAGCTTCGATGTT+TGG | 0.327106 | 8.3:+74401018 | None:intergenic |
| ATCCAAATTGATAATGACTT+TGG | 0.331580 | 8.3:-74400934 | MS.gene072237:CDS |
| GATCCAAAGCTTCGATGTTT+GGG | 0.334737 | 8.3:+74401019 | None:intergenic |
| AAGCAAGGAAAGCAGAGAAT+TGG | 0.348216 | 8.3:+74400457 | None:intergenic |
| TTTGTAAATGCACTCCTCTA+TGG | 0.350361 | 8.3:-74401045 | MS.gene072237:CDS |
| ACGAGACATTTAGGAGCATT+TGG | 0.362243 | 8.3:+74400174 | None:intergenic |
| TCCAAATTGATAATGACTTT+GGG | 0.374634 | 8.3:-74400933 | MS.gene072237:CDS |
| TGTGGAGCCCATCCCAAAAT+TGG | 0.398960 | 8.3:+74400198 | None:intergenic |
| GCCTCCCAACTTCCTTGAAA+AGG | 0.404529 | 8.3:-74400963 | MS.gene072237:CDS |
| CTGCCCAAACATCGAAGCTT+TGG | 0.404819 | 8.3:-74401022 | MS.gene072237:CDS |
| AAATCCTTTAAATTGAATAA+AGG | 0.407580 | 8.3:+74400140 | None:intergenic |
| GTCCTACAAAGTTCTCCAAT+AGG | 0.413386 | 8.3:+74402221 | None:intergenic |
| ATTTGTGTTGGTAAATGTTA+AGG | 0.432502 | 8.3:+74400875 | None:intergenic |
| TCCTACAAAGTTCTCCAATA+GGG | 0.454670 | 8.3:+74402222 | None:intergenic |
| TGTTTGTTCCTCAGTATTTG+TGG | 0.457246 | 8.3:-74401162 | MS.gene072237:intron |
| CATTTAGGAGCATTTGGTTG+TGG | 0.462791 | 8.3:+74400180 | None:intergenic |
| ATTTAGAGCTCATTCTTCCC+TGG | 0.465600 | 8.3:-74400487 | MS.gene072237:CDS |
| CGATGTTTGGGCAGCCATAG+AGG | 0.476932 | 8.3:+74401031 | None:intergenic |
| CTTTAAATTGAATAAAGGTC+AGG | 0.486856 | 8.3:+74400145 | None:intergenic |
| GAATGTCGTACTTCTTACTT+TGG | 0.491736 | 8.3:+74400022 | None:intergenic |
| ATGTTAAGGTACTCAAGATC+TGG | 0.494726 | 8.3:+74400889 | None:intergenic |
| TCAACAAATGACACCTCATC+TGG | 0.509197 | 8.3:+74400108 | None:intergenic |
| AAACATCAATGAATTTGTGT+TGG | 0.509347 | 8.3:+74400863 | None:intergenic |
| CGTCCTCGGTAACGTGGAAG+TGG | 0.511633 | 8.3:-74401070 | MS.gene072237:CDS |
| CAGAGAATTGGAATTAAACC+AGG | 0.532171 | 8.3:+74400469 | None:intergenic |
| TCGACAAAATCATACGAGAA+AGG | 0.544500 | 8.3:+74400790 | None:intergenic |
| AAGATTATCGAATGCGTCAA+GGG | 0.544940 | 8.3:-74399995 | MS.gene072237:CDS |
| TAAATTGAATAAAGGTCAGG+TGG | 0.546131 | 8.3:+74400148 | None:intergenic |
| AGCTGCTCAACACTCTCTCC+AGG | 0.552471 | 8.3:-74400756 | MS.gene072237:CDS |
| CAAGGGCCTCAAGAATGTGC+CGG | 0.557387 | 8.3:-74399978 | MS.gene072237:CDS |
| ACAAAACATTTAGTGTTGAG+TGG | 0.567598 | 8.3:-74400733 | MS.gene072237:CDS |
| GTGTTGAGCAGCTTGAGTAA+TGG | 0.577786 | 8.3:+74400766 | None:intergenic |
| AATTGACGTCCTCGGTAACG+TGG | 0.583783 | 8.3:-74401076 | MS.gene072237:CDS |
| TTGTTCCTCAGTATTTGTGG+TGG | 0.593026 | 8.3:-74401159 | MS.gene072237:intron |
| AAAGATTATCGAATGCGTCA+AGG | 0.594567 | 8.3:-74399996 | MS.gene072237:CDS |
| GTGGACGAACAGTGGCTGCT+TGG | 0.595934 | 8.3:-74400554 | MS.gene072237:intron |
| CAACTCAGTCAAATGTAAGC+CGG | 0.606443 | 8.3:+74399959 | None:intergenic |
| ATTAGCAGCATCTTCAGTGA+TGG | 0.609190 | 8.3:+74401096 | None:intergenic |
| TACAAAGTTCTCCAATAGGG+TGG | 0.616264 | 8.3:+74402225 | None:intergenic |
| TGTAAGCCGGCACATTCTTG+AGG | 0.624151 | 8.3:+74399972 | None:intergenic |
| AAATTGAATAAAGGTCAGGT+GGG | 0.634827 | 8.3:+74400149 | None:intergenic |
| ATTTCTAGGATTACCAGATG+AGG | 0.640555 | 8.3:-74400121 | MS.gene072237:CDS |
| GTTGAGTGGTTCAACAACCA+AGG | 0.655045 | 8.3:-74400719 | MS.gene072237:intron |
| GAGGTGATGATGAGGAACAT+TGG | 0.663443 | 8.3:-74402264 | None:intergenic |
| ATGCTGCTAATTGACGTCCT+CGG | 0.668353 | 8.3:-74401084 | MS.gene072237:CDS |
| TCTCAAAATTCAGAACAACA+AGG | 0.673538 | 8.3:-74400411 | MS.gene072237:intron |
| CATGAACGGCTTTCACAACG+TGG | 0.681986 | 8.3:-74400836 | MS.gene072237:CDS |
| AAGCCACTTCCACGTTACCG+AGG | 0.685618 | 8.3:+74401067 | None:intergenic |
| AGAGAATTGGAATTAAACCA+GGG | 0.686115 | 8.3:+74400470 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATCATGTTATATATT+GGG | + | chr8.3:74401944-74401963 | None:intergenic | 10.0% |
| !! | AAATCCTTTAAATTGAATAA+AGG | + | chr8.3:74402081-74402100 | None:intergenic | 15.0% |
| !! | AATGTTATTAATTGTAAATG+AGG | - | chr8.3:74400889-74400908 | MS.gene072237:CDS | 15.0% |
| !! | GAATTAATCATGTTATATAT+TGG | + | chr8.3:74401945-74401964 | None:intergenic | 15.0% |
| !!! | AAATATTCAGATATTTGTTA+TGG | + | chr8.3:74400581-74400600 | None:intergenic | 15.0% |
| !!! | AAATTCTATGTTTAATTTTC+AGG | + | chr8.3:74400413-74400432 | None:intergenic | 15.0% |
| !!! | CAAATATCTGAATATTTTTA+TGG | - | chr8.3:74400584-74400603 | MS.gene072237:intron | 15.0% |
| !!! | GAAAATTAAACATAGAATTT+TGG | - | chr8.3:74400413-74400432 | MS.gene072237:CDS | 15.0% |
| !! | AAATACAACCTAAAGATAAA+AGG | - | chr8.3:74400927-74400946 | MS.gene072237:CDS | 20.0% |
| !! | AACATAAAACTAATTTACCT+TGG | + | chr8.3:74401519-74401538 | None:intergenic | 20.0% |
| !! | AATACAACCTAAAGATAAAA+GGG | - | chr8.3:74400928-74400947 | MS.gene072237:CDS | 20.0% |
| !! | ACAACTAACATAGAAAAATT+AGG | - | chr8.3:74400099-74400118 | MS.gene072237:CDS | 20.0% |
| !! | ATTCAATTTAAAGGATTTCT+AGG | - | chr8.3:74402083-74402102 | MS.gene072237:intron | 20.0% |
| !! | CAAAACGTTAAAATTTCAAT+TGG | - | chr8.3:74400298-74400317 | MS.gene072237:intron | 20.0% |
| !!! | ATATGTTTGCAAAATTTTCT+AGG | + | chr8.3:74400330-74400349 | None:intergenic | 20.0% |
| !!! | TATTTTACCCTTTTATCTTT+AGG | + | chr8.3:74400938-74400957 | None:intergenic | 20.0% |
| !!! | TTTAGGTTGTATTTAAACAT+GGG | + | chr8.3:74400921-74400940 | None:intergenic | 20.0% |
| ! | AAAATTCAAATCTCAAGAGT+AGG | - | chr8.3:74400769-74400788 | MS.gene072237:CDS | 25.0% |
| ! | AAACATCAATGAATTTGTGT+TGG | + | chr8.3:74401358-74401377 | None:intergenic | 25.0% |
| ! | AAATTCAAATCTCAAGAGTA+GGG | - | chr8.3:74400770-74400789 | MS.gene072237:CDS | 25.0% |
| ! | AATCATGTTATATATTGGGT+GGG | + | chr8.3:74401940-74401959 | None:intergenic | 25.0% |
| ! | CTCAATTTGTCTATGTTATT+AGG | + | chr8.3:74400140-74400159 | None:intergenic | 25.0% |
| ! | CTGACCTTTATTCAATTTAA+AGG | - | chr8.3:74402074-74402093 | MS.gene072237:intron | 25.0% |
| ! | CTTTAAATTGAATAAAGGTC+AGG | + | chr8.3:74402076-74402095 | None:intergenic | 25.0% |
| ! | GTTAAAATTTCAATTGGTGT+GGG | - | chr8.3:74400304-74400323 | MS.gene072237:intron | 25.0% |
| ! | TAATCATGTTATATATTGGG+TGG | + | chr8.3:74401941-74401960 | None:intergenic | 25.0% |
| ! | TATGATAACTGTAACGTTTA+AGG | - | chr8.3:74400251-74400270 | MS.gene072237:intron | 25.0% |
| ! | TTATTAGGTGCACTTATAAT+AGG | + | chr8.3:74400125-74400144 | None:intergenic | 25.0% |
| ! | TTGACTATACAAAGAAATCA+CGG | + | chr8.3:74400471-74400490 | None:intergenic | 25.0% |
| !! | ATTTGTGTTGGTAAATGTTA+AGG | + | chr8.3:74401346-74401365 | None:intergenic | 25.0% |
| !! | ATTTTTCCAAAGAATCAGAT+AGG | + | chr8.3:74400071-74400090 | None:intergenic | 25.0% |
| !!! | AGTCAAGAAAATGGATTATA+AGG | - | chr8.3:74400736-74400755 | MS.gene072237:CDS | 25.0% |
| !!! | ATCCAAATTGATAATGACTT+TGG | - | chr8.3:74401284-74401303 | MS.gene072237:intron | 25.0% |
| !!! | ATTGATGTTTTAAGCATGAA+CGG | - | chr8.3:74401368-74401387 | MS.gene072237:intron | 25.0% |
| !!! | CTTTAGGTTGTATTTAAACA+TGG | + | chr8.3:74400922-74400941 | None:intergenic | 25.0% |
| !!! | TCACTTTTTATTTGATAGCT+TGG | - | chr8.3:74401223-74401242 | MS.gene072237:intron | 25.0% |
| !!! | TCCAAATTGATAATGACTTT+GGG | - | chr8.3:74401285-74401304 | MS.gene072237:intron | 25.0% |
| AAATTGAATAAAGGTCAGGT+GGG | + | chr8.3:74402072-74402091 | None:intergenic | 30.0% | |
| AACATAGACAAATTGAGTCA+CGG | - | chr8.3:74400143-74400162 | MS.gene072237:CDS | 30.0% | |
| ACCCAAAGTCATTATCAATT+TGG | + | chr8.3:74401289-74401308 | None:intergenic | 30.0% | |
| AGAGAATTGGAATTAAACCA+GGG | + | chr8.3:74401751-74401770 | None:intergenic | 30.0% | |
| ATACCATTCAGTCAAGAAAA+TGG | - | chr8.3:74400727-74400746 | MS.gene072237:CDS | 30.0% | |
| ATCATGTTATATATTGGGTG+GGG | + | chr8.3:74401939-74401958 | None:intergenic | 30.0% | |
| ATTGAATCAGAGAAAAACTG+TGG | - | chr8.3:74400495-74400514 | MS.gene072237:CDS | 30.0% | |
| CAATATCCTATCTGATTCTT+TGG | - | chr8.3:74400062-74400081 | MS.gene072237:CDS | 30.0% | |
| CGTTAAAATTTCAATTGGTG+TGG | - | chr8.3:74400303-74400322 | MS.gene072237:intron | 30.0% | |
| GTAACACTAACAACTATATC+AGG | - | chr8.3:74400170-74400189 | MS.gene072237:CDS | 30.0% | |
| TAAATTGAATAAAGGTCAGG+TGG | + | chr8.3:74402073-74402092 | None:intergenic | 30.0% | |
| TCTCAAAATTCAGAACAACA+AGG | - | chr8.3:74401807-74401826 | MS.gene072237:intron | 30.0% | |
| TCTTGAAAAAATAGATCACG+AGG | + | chr8.3:74401694-74401713 | None:intergenic | 30.0% | |
| TTCAGTGATGGTAAACTTAT+TGG | + | chr8.3:74401113-74401132 | None:intergenic | 30.0% | |
| ! | AATCCATTTTCTTGACTGAA+TGG | + | chr8.3:74400733-74400752 | None:intergenic | 30.0% |
| ! | ACAAAACATTTAGTGTTGAG+TGG | - | chr8.3:74401485-74401504 | MS.gene072237:intron | 30.0% |
| !! | CTAATTGCTACTTGATAATG+TGG | - | chr8.3:74401645-74401664 | MS.gene072237:intron | 30.0% |
| !! | GAATGGTATTTTGAGTGTTA+CGG | + | chr8.3:74400716-74400735 | None:intergenic | 30.0% |
| !!! | AGTGTTACGGTGATTTTTTA+TGG | + | chr8.3:74400703-74400722 | None:intergenic | 30.0% |
| AAACTGTGGTTGTAGATTTG+TGG | - | chr8.3:74400509-74400528 | MS.gene072237:CDS | 35.0% | |
| AAAGATTATCGAATGCGTCA+AGG | - | chr8.3:74402222-74402241 | MS.gene072237:intron | 35.0% | |
| AAAGGTTTATGTTTCTCCTG+TGG | + | chr8.3:74400623-74400642 | None:intergenic | 35.0% | |
| AAGATTATCGAATGCGTCAA+GGG | - | chr8.3:74402223-74402242 | MS.gene072237:intron | 35.0% | |
| ACAAGATGGAAAAAGCCAAA+AGG | + | chr8.3:74400641-74400660 | None:intergenic | 35.0% | |
| ACACTAACAACTATATCAGG+TGG | - | chr8.3:74400173-74400192 | MS.gene072237:CDS | 35.0% | |
| CAGAGAATTGGAATTAAACC+AGG | + | chr8.3:74401752-74401771 | None:intergenic | 35.0% | |
| GAATGTCGTACTTCTTACTT+TGG | + | chr8.3:74402199-74402218 | None:intergenic | 35.0% | |
| GTACTTCTTACTTTGGTCTA+AGG | + | chr8.3:74402192-74402211 | None:intergenic | 35.0% | |
| TCCTACAAAGTTCTCCAATA+GGG | + | chr8.3:74399999-74400018 | None:intergenic | 35.0% | |
| TCGACAAAATCATACGAGAA+AGG | + | chr8.3:74401431-74401450 | None:intergenic | 35.0% | |
| TGTTTGTTCCTCAGTATTTG+TGG | - | chr8.3:74401056-74401075 | MS.gene072237:CDS | 35.0% | |
| TTTGTAAATGCACTCCTCTA+TGG | - | chr8.3:74401173-74401192 | MS.gene072237:intron | 35.0% | |
| ! | ATGTTAAGGTACTCAAGATC+TGG | + | chr8.3:74401332-74401351 | None:intergenic | 35.0% |
| ! | CAACACTAAATGTTTTGTCC+TGG | + | chr8.3:74401483-74401502 | None:intergenic | 35.0% |
| ! | CAGGAGAAACATAAACCTTT+TGG | - | chr8.3:74400623-74400642 | MS.gene072237:intron | 35.0% |
| ! | GATAGGATATTGATTGTTCC+TGG | + | chr8.3:74400054-74400073 | None:intergenic | 35.0% |
| ! | TTGGATTTTCAGCCTTTTCA+AGG | + | chr8.3:74401270-74401289 | None:intergenic | 35.0% |
| !! | AAGGTCTTGTGTGTTTTAGA+TGG | - | chr8.3:74400270-74400289 | MS.gene072237:intron | 35.0% |
| !! | ATTTCTAGGATTACCAGATG+AGG | - | chr8.3:74402097-74402116 | MS.gene072237:intron | 35.0% |
| !! | ATTTTGAGAACTTGTAGCAC+AGG | + | chr8.3:74401796-74401815 | None:intergenic | 35.0% |
| AAGCAAGGAAAGCAGAGAAT+TGG | + | chr8.3:74401764-74401783 | None:intergenic | 40.0% | |
| AATGCATTTCTCCACCCTAT+TGG | - | chr8.3:74399982-74400001 | MS.gene072237:CDS | 40.0% | |
| ACCCTATTGGAGAACTTTGT+AGG | - | chr8.3:74399995-74400014 | MS.gene072237:CDS | 40.0% | |
| AGATCCAAAGCTTCGATGTT+TGG | + | chr8.3:74401203-74401222 | None:intergenic | 40.0% | |
| ATTAGCAGCATCTTCAGTGA+TGG | + | chr8.3:74401125-74401144 | None:intergenic | 40.0% | |
| CAAAGACACACAAACTAGGA+AGG | + | chr8.3:74400220-74400239 | None:intergenic | 40.0% | |
| CAGTCAAAGACACACAAACT+AGG | + | chr8.3:74400224-74400243 | None:intergenic | 40.0% | |
| GAATTCCACCACAAATACTG+AGG | + | chr8.3:74401067-74401086 | None:intergenic | 40.0% | |
| GACACGATGCATATGACATA+GGG | - | chr8.3:74400384-74400403 | MS.gene072237:intron | 40.0% | |
| GATCCAAAGCTTCGATGTTT+GGG | + | chr8.3:74401202-74401221 | None:intergenic | 40.0% | |
| GTCCTACAAAGTTCTCCAAT+AGG | + | chr8.3:74400000-74400019 | None:intergenic | 40.0% | |
| TACAAAGTTCTCCAATAGGG+TGG | + | chr8.3:74399996-74400015 | None:intergenic | 40.0% | |
| TCAACAAATGACACCTCATC+TGG | + | chr8.3:74402113-74402132 | None:intergenic | 40.0% | |
| TGACACGATGCATATGACAT+AGG | - | chr8.3:74400383-74400402 | MS.gene072237:intron | 40.0% | |
| TGATGTCCTAACCTTTGCTA+CGG | + | chr8.3:74400550-74400569 | None:intergenic | 40.0% | |
| TTGTTCCTCAGTATTTGTGG+TGG | - | chr8.3:74401059-74401078 | MS.gene072237:CDS | 40.0% | |
| ! | AAATTGGTGACTGTTCCTGT+AGG | + | chr8.3:74402007-74402026 | None:intergenic | 40.0% |
| ! | ACAGGAACAGTCACCAATTT+TGG | - | chr8.3:74402007-74402026 | MS.gene072237:intron | 40.0% |
| ! | ATTTAGAGCTCATTCTTCCC+TGG | - | chr8.3:74401731-74401750 | MS.gene072237:intron | 40.0% |
| ! | CAGGAACAGTCACCAATTTT+GGG | - | chr8.3:74402008-74402027 | MS.gene072237:intron | 40.0% |
| ! | CTAGTTTGTGTGTCTTTGAC+TGG | - | chr8.3:74400222-74400241 | MS.gene072237:intron | 40.0% |
| ! | GTTGAGCATGTTTTGCAAGA+AGG | - | chr8.3:74402128-74402147 | MS.gene072237:intron | 40.0% |
| ! | TCAAGTCTTTTGTTGCCTAC+AGG | - | chr8.3:74401989-74402008 | MS.gene072237:intron | 40.0% |
| !! | AACAGTCACCAATTTTGGGA+TGG | - | chr8.3:74402012-74402031 | MS.gene072237:intron | 40.0% |
| !! | ACGAGACATTTAGGAGCATT+TGG | + | chr8.3:74402047-74402066 | None:intergenic | 40.0% |
| !! | ACTATATCAGGTGGTTCTAG+TGG | - | chr8.3:74400182-74400201 | MS.gene072237:CDS | 40.0% |
| !! | CATTTAGGAGCATTTGGTTG+TGG | + | chr8.3:74402041-74402060 | None:intergenic | 40.0% |
| !! | TCAGCCTTTTCAAGGAAGTT+GGG | + | chr8.3:74401262-74401281 | None:intergenic | 40.0% |
| !! | TTCAGCCTTTTCAAGGAAGT+TGG | + | chr8.3:74401263-74401282 | None:intergenic | 40.0% |
| !! | TTGATAATGTGGACGAACAG+TGG | - | chr8.3:74401656-74401675 | MS.gene072237:intron | 40.0% |
| !!! | ACAGTCACCAATTTTGGGAT+GGG | - | chr8.3:74402013-74402032 | MS.gene072237:intron | 40.0% |
| !!! | CACAGGACATTTTTGAAGCA+AGG | + | chr8.3:74401779-74401798 | None:intergenic | 40.0% |
| AGCAAAGGTTAGGACATCAG+TGG | - | chr8.3:74400551-74400570 | MS.gene072237:intron | 45.0% | |
| AGGTGGGATACGAGACATTT+AGG | + | chr8.3:74402056-74402075 | None:intergenic | 45.0% | |
| ATGCTGCTAATTGACGTCCT+CGG | - | chr8.3:74401134-74401153 | MS.gene072237:CDS | 45.0% | |
| ATTGATTGTTCCTGGCACGA+TGG | + | chr8.3:74400046-74400065 | None:intergenic | 45.0% | |
| CAGCAATTGCTGAACTGGAT+TGG | + | chr8.3:74400365-74400384 | None:intergenic | 45.0% | |
| CATCTTGTCTCCCACTTTGA+GGG | - | chr8.3:74400653-74400672 | MS.gene072237:intron | 45.0% | |
| GTGTTGAGCAGCTTGAGTAA+TGG | + | chr8.3:74401455-74401474 | None:intergenic | 45.0% | |
| GTTGAGTGGTTCAACAACCA+AGG | - | chr8.3:74401499-74401518 | MS.gene072237:intron | 45.0% | |
| TGTAGATTTGTGGAGAGCAG+AGG | - | chr8.3:74400519-74400538 | MS.gene072237:CDS | 45.0% | |
| ! | TGGAGCAATTGATTCACCAC+AGG | - | chr8.3:74400604-74400623 | MS.gene072237:intron | 45.0% |
| !! | ATATCAGGTGGTTCTAGTGG+CGG | - | chr8.3:74400185-74400204 | MS.gene072237:CDS | 45.0% |
| !! | GTTTTGAGTGCCCTCAAAGT+GGG | + | chr8.3:74400666-74400685 | None:intergenic | 45.0% |
| !!! | AGTTTTGAGTGCCCTCAAAG+TGG | + | chr8.3:74400667-74400686 | None:intergenic | 45.0% |
| AATTGACGTCCTCGGTAACG+TGG | - | chr8.3:74401142-74401161 | MS.gene072237:CDS | 50.0% | |
| CATGAACGGCTTTCACAACG+TGG | - | chr8.3:74401382-74401401 | MS.gene072237:intron | 50.0% | |
| CCATCTTGTCTCCCACTTTG+AGG | - | chr8.3:74400652-74400671 | MS.gene072237:intron | 50.0% | |
| CCTCAAAGTGGGAGACAAGA+TGG | + | chr8.3:74400655-74400674 | None:intergenic | 50.0% | |
| CGTGTCAGCAATTGCTGAAC+TGG | + | chr8.3:74400370-74400389 | None:intergenic | 50.0% | |
| CTGCCCAAACATCGAAGCTT+TGG | - | chr8.3:74401196-74401215 | MS.gene072237:intron | 50.0% | |
| GCCTCCCAACTTCCTTGAAA+AGG | - | chr8.3:74401255-74401274 | MS.gene072237:intron | 50.0% | |
| GTTCTGCCGTAGCAAAGGTT+AGG | - | chr8.3:74400541-74400560 | MS.gene072237:CDS | 50.0% | |
| TGTAAGCCGGCACATTCTTG+AGG | + | chr8.3:74402249-74402268 | None:intergenic | 50.0% | |
| TGTGGAGCCCATCCCAAAAT+TGG | + | chr8.3:74402023-74402042 | None:intergenic | 50.0% | |
| !! | GCCTTTTCAAGGAAGTTGGG+AGG | + | chr8.3:74401259-74401278 | None:intergenic | 50.0% |
| AAGCCACTTCCACGTTACCG+AGG | + | chr8.3:74401154-74401173 | None:intergenic | 55.0% | |
| AGCTGCTCAACACTCTCTCC+AGG | - | chr8.3:74401462-74401481 | MS.gene072237:intron | 55.0% | |
| CAAGGGCCTCAAGAATGTGC+CGG | - | chr8.3:74402240-74402259 | MS.gene072237:CDS | 55.0% | |
| CAGAGGTTCTGCCGTAGCAA+AGG | - | chr8.3:74400536-74400555 | MS.gene072237:CDS | 55.0% | |
| CGATGTTTGGGCAGCCATAG+AGG | + | chr8.3:74401190-74401209 | None:intergenic | 55.0% | |
| TGTTCCTGGCACGATGGCAT+TGG | + | chr8.3:74400040-74400059 | None:intergenic | 55.0% | |
| CGTCCTCGGTAACGTGGAAG+TGG | - | chr8.3:74401148-74401167 | MS.gene072237:CDS | 60.0% | |
| GTGGACGAACAGTGGCTGCT+TGG | - | chr8.3:74401664-74401683 | MS.gene072237:intron | 60.0% | |
| GTTGCCAATGCCATCGTGCC+AGG | - | chr8.3:74400033-74400052 | MS.gene072237:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 74399963 | 74402277 | 74399963 | ID=MS.gene072237 |
| chr8.3 | mRNA | 74399963 | 74402277 | 74399963 | ID=MS.gene072237.t1;Parent=MS.gene072237 |
| chr8.3 | exon | 74402228 | 74402277 | 74402228 | ID=MS.gene072237.t1.exon1;Parent=MS.gene072237.t1 |
| chr8.3 | CDS | 74402228 | 74402277 | 74402228 | ID=cds.MS.gene072237.t1;Parent=MS.gene072237.t1 |
| chr8.3 | exon | 74400720 | 74401170 | 74400720 | ID=MS.gene072237.t1.exon2;Parent=MS.gene072237.t1 |
| chr8.3 | CDS | 74400720 | 74401170 | 74400720 | ID=cds.MS.gene072237.t1;Parent=MS.gene072237.t1 |
| chr8.3 | exon | 74400412 | 74400564 | 74400412 | ID=MS.gene072237.t1.exon3;Parent=MS.gene072237.t1 |
| chr8.3 | CDS | 74400412 | 74400564 | 74400412 | ID=cds.MS.gene072237.t1;Parent=MS.gene072237.t1 |
| chr8.3 | exon | 74399963 | 74400229 | 74399963 | ID=MS.gene072237.t1.exon4;Parent=MS.gene072237.t1 |
| chr8.3 | CDS | 74399963 | 74400229 | 74399963 | ID=cds.MS.gene072237.t1;Parent=MS.gene072237.t1 |
| Gene Sequence |
| Protein sequence |
