Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072390.t1 | XP_024625249.1 | 96.7 | 426 | 14 | 0 | 1 | 426 | 146 | 571 | 1.10E-233 | 818.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072390.t1 | Q9M219 | 23.0 | 426 | 298 | 8 | 7 | 416 | 135 | 546 | 1.6e-28 | 128.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072390.t1 | G7KVB8 | 96.7 | 426 | 14 | 0 | 1 | 426 | 146 | 571 | 7.8e-234 | 818.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene072390.t1 | TR | mTERF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049821 | MS.gene072390 | 0.807601 | 4.67E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene072390 | 0.822989 | 1.76E-53 | -1.69E-46 |
| MS.gene05188 | MS.gene072390 | 0.809177 | 2.15E-50 | -1.69E-46 |
| MS.gene053122 | MS.gene072390 | 0.802928 | 4.45E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene072390 | 0.805054 | 1.61E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene072390 | 0.807041 | 6.14E-50 | -1.69E-46 |
| MS.gene055808 | MS.gene072390 | 0.823783 | 1.15E-53 | -1.69E-46 |
| MS.gene056215 | MS.gene072390 | 0.81579 | 7.72E-52 | -1.69E-46 |
| MS.gene05689 | MS.gene072390 | 0.803544 | 3.31E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene072390 | 0.801406 | 9.14E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene072390 | 0.809413 | 1.92E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene072390 | 0.801417 | 9.09E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene072390 | 0.846085 | 2.71E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072390.t1 | MTR_7g093000 | 96.714 | 426 | 14 | 0 | 1 | 426 | 146 | 571 | 0.0 | 848 |
| MS.gene072390.t1 | MTR_5g084810 | 34.293 | 417 | 265 | 3 | 3 | 418 | 171 | 579 | 3.94e-78 | 253 |
| MS.gene072390.t1 | MTR_7g080620 | 21.709 | 433 | 299 | 12 | 7 | 416 | 159 | 574 | 8.09e-22 | 98.6 |
| MS.gene072390.t1 | MTR_8g005155 | 20.000 | 430 | 307 | 11 | 7 | 416 | 142 | 554 | 1.91e-18 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072390.t1 | AT5G06811 | 46.318 | 421 | 217 | 3 | 1 | 419 | 163 | 576 | 5.17e-124 | 372 |
| MS.gene072390.t1 | AT5G06810 | 42.280 | 421 | 230 | 5 | 1 | 419 | 171 | 580 | 6.90e-112 | 341 |
| MS.gene072390.t1 | AT4G19650 | 38.517 | 418 | 247 | 4 | 3 | 419 | 164 | 572 | 2.92e-95 | 297 |
| MS.gene072390.t1 | AT4G19650 | 38.517 | 418 | 247 | 4 | 3 | 419 | 181 | 589 | 4.17e-95 | 297 |
| MS.gene072390.t1 | AT5G45113 | 34.360 | 422 | 258 | 5 | 3 | 419 | 4 | 411 | 1.23e-81 | 257 |
| MS.gene072390.t1 | AT3G60400 | 22.951 | 427 | 299 | 8 | 6 | 416 | 134 | 546 | 8.91e-32 | 127 |
Find 91 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATGAGGTTTCTTGTAAT+TGG | 0.139207 | 7.4:+15926801 | MS.gene072390:CDS |
| AGAAATGGATTGGGCGTTTA+AGG | 0.166970 | 7.4:+15927354 | MS.gene072390:CDS |
| CTTAACTCTTGGAGATTTAT+AGG | 0.169215 | 7.4:-15927581 | None:intergenic |
| TGCTGTAAGTCCAGGGATTC+TGG | 0.230492 | 7.4:+15926670 | MS.gene072390:CDS |
| ATCCGTCTGGCCTTCAAGTT+TGG | 0.231486 | 7.4:+15927722 | MS.gene072390:CDS |
| GGATGAGGTTTCTTGTAATT+GGG | 0.245427 | 7.4:+15926802 | MS.gene072390:CDS |
| TGGTGTTCCTCGATCCAAAA+TGG | 0.255150 | 7.4:+15926532 | MS.gene072390:CDS |
| TAAATTTGAAAATGGGGTTT+TGG | 0.276379 | 7.4:+15926586 | MS.gene072390:CDS |
| GATTAAGGCTTATGAAGATT+TGG | 0.277999 | 7.4:+15926616 | MS.gene072390:CDS |
| GAAATGAAGAACTGGGTTCT+TGG | 0.309862 | 7.4:+15927226 | MS.gene072390:CDS |
| ATTAAGGCTTATGAAGATTT+GGG | 0.321396 | 7.4:+15926617 | MS.gene072390:CDS |
| AGGTAAGGGAGCTGAGCTTC+AGG | 0.325160 | 7.4:+15927384 | MS.gene072390:CDS |
| TTAAGCCTATGGTTGGCTTA+AGG | 0.351833 | 7.4:+15927257 | MS.gene072390:CDS |
| ATCCTCTTGAAATGAAGAAC+TGG | 0.352452 | 7.4:+15927218 | MS.gene072390:CDS |
| TTAGGTTGTCAATGTATAAC+TGG | 0.352925 | 7.4:+15927605 | MS.gene072390:CDS |
| TAAGCCTATGGTTGGCTTAA+GGG | 0.353016 | 7.4:+15927258 | MS.gene072390:CDS |
| TCCGTCTGGCCTTCAAGTTT+GGG | 0.365084 | 7.4:+15927723 | MS.gene072390:CDS |
| TACCACACTCTGTGTAACTA+TGG | 0.367026 | 7.4:+15926512 | MS.gene072390:CDS |
| ATTATCTGTGCATGCGATAA+TGG | 0.370221 | 7.4:-15927671 | None:intergenic |
| GCAACTCTTCCCAAACTTGA+AGG | 0.394707 | 7.4:-15927732 | None:intergenic |
| GGCAAGACACTCTCGATGAT+TGG | 0.410057 | 7.4:+15926932 | MS.gene072390:CDS |
| ATTGAGTATCTTGTAAAGAA+AGG | 0.421238 | 7.4:+15927517 | MS.gene072390:CDS |
| GACCATGGGGCTGTAAATCC+CGG | 0.423219 | 7.4:+15927634 | MS.gene072390:CDS |
| GGTGTTCCTCGATCCAAAAT+GGG | 0.437198 | 7.4:+15926533 | MS.gene072390:CDS |
| TTCTTAATCAGAACACAGAT+AGG | 0.440115 | 7.4:+15927482 | MS.gene072390:CDS |
| CAGTCTCACACAGTACTTGC+GGG | 0.440618 | 7.4:+15927112 | MS.gene072390:CDS |
| TATGGTTGGCTTAAGGGATC+TGG | 0.446200 | 7.4:+15927264 | MS.gene072390:CDS |
| GATGAGGTTTCTTGTAATTG+GGG | 0.448648 | 7.4:+15926803 | MS.gene072390:CDS |
| TGTGGAAAACACGAAAGAAA+TGG | 0.448745 | 7.4:+15927339 | MS.gene072390:CDS |
| CTTGTTGCGCTTAGGTTATG+TGG | 0.449939 | 7.4:+15927321 | MS.gene072390:CDS |
| TTGTGCTTGCTTTCGAATGT+TGG | 0.450865 | 7.4:+15926842 | MS.gene072390:CDS |
| GTTTAAGGCGTTCAGAGGTA+AGG | 0.457273 | 7.4:+15927369 | MS.gene072390:CDS |
| GAGATGGAAGCTAAAGAGAT+TGG | 0.461660 | 7.4:+15927079 | MS.gene072390:CDS |
| TGTTAATGTTGAATTTGTTA+AGG | 0.462584 | 7.4:+15926700 | MS.gene072390:CDS |
| CCGCAAGTACTGTGTGAGAC+TGG | 0.465962 | 7.4:-15927111 | None:intergenic |
| GTTGCTTGAATGTAGGTAAG+AGG | 0.469865 | 7.4:+15927170 | MS.gene072390:CDS |
| CGAGAAACAAGAGGGCAATC+TGG | 0.474907 | 7.4:-15926985 | None:intergenic |
| AAGACAACTAAGAGTTTGCT+TGG | 0.477982 | 7.4:+15927148 | MS.gene072390:CDS |
| TATGTAAAACGCCATCCGTC+TGG | 0.479613 | 7.4:+15927709 | MS.gene072390:CDS |
| GACAACCTAAGCTTAACTCT+TGG | 0.480332 | 7.4:-15927592 | None:intergenic |
| AATCTCCAAGAGTTAAGCTT+AGG | 0.484339 | 7.4:+15927587 | MS.gene072390:CDS |
| AAAACACGAAAGAAATGGAT+TGG | 0.486098 | 7.4:+15927344 | MS.gene072390:CDS |
| TTGCTTGGTTGCTTGAATGT+AGG | 0.497867 | 7.4:+15927163 | MS.gene072390:CDS |
| ACAGAGTTCTTGTTGCGCTT+AGG | 0.497883 | 7.4:+15927313 | MS.gene072390:CDS |
| TTGATAGTGGTTGGATTCAG+TGG | 0.501005 | 7.4:+15926771 | MS.gene072390:CDS |
| TGGAATAAGAGTTAAGCCTA+TGG | 0.513478 | 7.4:+15927246 | MS.gene072390:CDS |
| ACCCAGTTCTTCATTTCAAG+AGG | 0.514113 | 7.4:-15927220 | None:intergenic |
| TTGAAGAATATTGTTGCAAA+GGG | 0.516097 | 7.4:+15926734 | MS.gene072390:CDS |
| GATTTATAGGAAAGATATGA+TGG | 0.516794 | 7.4:-15927568 | None:intergenic |
| GCTTCTGACTGAAATTGAGA+TGG | 0.523682 | 7.4:+15927063 | MS.gene072390:CDS |
| AATGGTGCTCAAAGCAAGCC+CGG | 0.524340 | 7.4:-15927653 | None:intergenic |
| ATTGTTGCAAAGGGTGGTGA+TGG | 0.524388 | 7.4:+15926743 | MS.gene072390:CDS |
| TGGCTTAAGGGATCTGGAAG+AGG | 0.530600 | 7.4:+15927270 | MS.gene072390:CDS |
| AAACACGAAAGAAATGGATT+GGG | 0.533185 | 7.4:+15927345 | MS.gene072390:CDS |
| GAAGAGGAGAAATCGAGGGT+GGG | 0.535364 | 7.4:+15927286 | MS.gene072390:CDS |
| ACATCACCAACCAGAATCCC+TGG | 0.536336 | 7.4:-15926680 | None:intergenic |
| CGAGTTTCCACAGATTTCGA+TGG | 0.543091 | 7.4:+15927006 | MS.gene072390:CDS |
| ATAAGAGTTAAGCCTATGGT+TGG | 0.547914 | 7.4:+15927250 | MS.gene072390:CDS |
| AGATCCCTTAAGCCAACCAT+AGG | 0.552682 | 7.4:-15927262 | None:intergenic |
| AAGAATATTGTTGCAAAGGG+TGG | 0.552691 | 7.4:+15926737 | MS.gene072390:CDS |
| GCGTCTATGTAGCATACTGC+AGG | 0.554692 | 7.4:+15927192 | MS.gene072390:CDS |
| AAGAGGAGAAATCGAGGGTG+GGG | 0.556838 | 7.4:+15927287 | MS.gene072390:CDS |
| ATAACTGGCTCGTAGACCAT+GGG | 0.558316 | 7.4:+15927620 | MS.gene072390:CDS |
| CAGTTGGCTGAGATTATTCG+CGG | 0.563990 | 7.4:+15926878 | MS.gene072390:CDS |
| GTTGAAGAATATTGTTGCAA+AGG | 0.570077 | 7.4:+15926733 | MS.gene072390:CDS |
| TATAACTGGCTCGTAGACCA+TGG | 0.570411 | 7.4:+15927619 | MS.gene072390:CDS |
| AATGCTGTTGCTGTAAGTCC+AGG | 0.570515 | 7.4:+15926662 | MS.gene072390:CDS |
| CCAGTCTCACACAGTACTTG+CGG | 0.570636 | 7.4:+15927111 | MS.gene072390:CDS |
| TTTAAGGCGTTCAGAGGTAA+GGG | 0.573608 | 7.4:+15927370 | MS.gene072390:CDS |
| ACCATGGGGCTGTAAATCCC+GGG | 0.578084 | 7.4:+15927635 | MS.gene072390:CDS |
| GGAAGAGGAGAAATCGAGGG+TGG | 0.579631 | 7.4:+15927285 | MS.gene072390:CDS |
| TCCCAAACTTGAAGGCCAGA+CGG | 0.582508 | 7.4:-15927724 | None:intergenic |
| CTGAAGACACACCCTCAAGT+TGG | 0.586419 | 7.4:-15927041 | None:intergenic |
| ATCTGGAAGAGGAGAAATCG+AGG | 0.593033 | 7.4:+15927281 | MS.gene072390:CDS |
| TCCTCTTGAAATGAAGAACT+GGG | 0.593818 | 7.4:+15927219 | MS.gene072390:CDS |
| TGGGCGTTTAAGGCGTTCAG+AGG | 0.599598 | 7.4:+15927364 | MS.gene072390:CDS |
| AAACTTGAAGGCCAGACGGA+TGG | 0.607382 | 7.4:-15927720 | None:intergenic |
| TCTTAATCAGAACACAGATA+GGG | 0.611252 | 7.4:+15927483 | MS.gene072390:CDS |
| GCCCGGGATTTACAGCCCCA+TGG | 0.614020 | 7.4:-15927636 | None:intergenic |
| CACCATAGTTACACAGAGTG+TGG | 0.622508 | 7.4:-15926514 | None:intergenic |
| GTAAGTCCAGGGATTCTGGT+TGG | 0.632171 | 7.4:+15926674 | MS.gene072390:CDS |
| ATGGTGCTCAAAGCAAGCCC+GGG | 0.635036 | 7.4:-15927652 | None:intergenic |
| GTGTTCTGATTAAGAATCTG+AGG | 0.641643 | 7.4:-15927475 | None:intergenic |
| GTGGAAACTCGAGAAACAAG+AGG | 0.644988 | 7.4:-15926994 | None:intergenic |
| TGGTTTCAGTGAGAAACAGT+TGG | 0.649810 | 7.4:+15926862 | MS.gene072390:CDS |
| TGGAAACTCGAGAAACAAGA+GGG | 0.652528 | 7.4:-15926993 | None:intergenic |
| GTGTTCCTCGATCCAAAATG+GGG | 0.658605 | 7.4:+15926534 | MS.gene072390:CDS |
| ATGCTGTTGCTGTAAGTCCA+GGG | 0.682252 | 7.4:+15926663 | MS.gene072390:CDS |
| AACTTGACCATCGAAATCTG+TGG | 0.684694 | 7.4:-15927013 | None:intergenic |
| TCTGGAAGAGGAGAAATCGA+GGG | 0.689277 | 7.4:+15927282 | MS.gene072390:CDS |
| TAACTGGCTCGTAGACCATG+GGG | 0.718245 | 7.4:+15927621 | MS.gene072390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTTAAATTTGAAAAT+GGG | + | chr7.4:15926579-15926598 | MS.gene072390:CDS | 10.0% |
| !!! | AGTTTTTAAATTTGAAAATG+GGG | + | chr7.4:15926580-15926599 | MS.gene072390:CDS | 15.0% |
| !!! | CAAGTTTTTAAATTTGAAAA+TGG | + | chr7.4:15926578-15926597 | MS.gene072390:CDS | 15.0% |
| !!! | TTTTCAAATTTAAAAACTTG+CGG | - | chr7.4:15926578-15926597 | None:intergenic | 15.0% |
| !! | GATTCTTCAAAAATAATACA+AGG | - | chr7.4:15926908-15926927 | None:intergenic | 20.0% |
| !!! | TGTATTATTTTTGAAGAATC+AGG | + | chr7.4:15926908-15926927 | MS.gene072390:CDS | 20.0% |
| !!! | TGTTAATGTTGAATTTGTTA+AGG | + | chr7.4:15926700-15926719 | MS.gene072390:CDS | 20.0% |
| !!! | TTTGATTTTATTGTTAATGC+TGG | + | chr7.4:15927412-15927431 | MS.gene072390:CDS | 20.0% |
| ! | ATTAAGGCTTATGAAGATTT+GGG | + | chr7.4:15926617-15926636 | MS.gene072390:CDS | 25.0% |
| ! | ATTGAGTATCTTGTAAAGAA+AGG | + | chr7.4:15927517-15927536 | MS.gene072390:CDS | 25.0% |
| ! | GATTTATAGGAAAGATATGA+TGG | - | chr7.4:15927571-15927590 | None:intergenic | 25.0% |
| ! | TTGAAGAATATTGTTGCAAA+GGG | + | chr7.4:15926734-15926753 | MS.gene072390:CDS | 25.0% |
| !! | TAAATTTGAAAATGGGGTTT+TGG | + | chr7.4:15926586-15926605 | MS.gene072390:CDS | 25.0% |
| !! | TTTGAAAATTTTCCCCATTT+TGG | - | chr7.4:15926549-15926568 | None:intergenic | 25.0% |
| !!! | ATTATTTTTGAAGAATCAGG+AGG | + | chr7.4:15926911-15926930 | MS.gene072390:CDS | 25.0% |
| !!! | ATTGGTTTTTTGGTCAAATT+TGG | + | chr7.4:15926950-15926969 | MS.gene072390:CDS | 25.0% |
| AAAACACGAAAGAAATGGAT+TGG | + | chr7.4:15927344-15927363 | MS.gene072390:CDS | 30.0% | |
| CTTAACTCTTGGAGATTTAT+AGG | - | chr7.4:15927584-15927603 | None:intergenic | 30.0% | |
| GATTAAGGCTTATGAAGATT+TGG | + | chr7.4:15926616-15926635 | MS.gene072390:CDS | 30.0% | |
| GTTGAAGAATATTGTTGCAA+AGG | + | chr7.4:15926733-15926752 | MS.gene072390:CDS | 30.0% | |
| TCTTAATCAGAACACAGATA+GGG | + | chr7.4:15927483-15927502 | MS.gene072390:CDS | 30.0% | |
| TTCTTAATCAGAACACAGAT+AGG | + | chr7.4:15927482-15927501 | MS.gene072390:CDS | 30.0% | |
| ! | AAACACGAAAGAAATGGATT+GGG | + | chr7.4:15927345-15927364 | MS.gene072390:CDS | 30.0% |
| ! | TTAGGTTGTCAATGTATAAC+TGG | + | chr7.4:15927605-15927624 | MS.gene072390:CDS | 30.0% |
| AAGAATATTGTTGCAAAGGG+TGG | + | chr7.4:15926737-15926756 | MS.gene072390:CDS | 35.0% | |
| AATCTCCAAGAGTTAAGCTT+AGG | + | chr7.4:15927587-15927606 | MS.gene072390:CDS | 35.0% | |
| ATAAGAGTTAAGCCTATGGT+TGG | + | chr7.4:15927250-15927269 | MS.gene072390:CDS | 35.0% | |
| ATCCTCTTGAAATGAAGAAC+TGG | + | chr7.4:15927218-15927237 | MS.gene072390:CDS | 35.0% | |
| ATTATCTGTGCATGCGATAA+TGG | - | chr7.4:15927674-15927693 | None:intergenic | 35.0% | |
| GATGAGGTTTCTTGTAATTG+GGG | + | chr7.4:15926803-15926822 | MS.gene072390:CDS | 35.0% | |
| GGATGAGGTTTCTTGTAATT+GGG | + | chr7.4:15926802-15926821 | MS.gene072390:CDS | 35.0% | |
| GTGTTCTGATTAAGAATCTG+AGG | - | chr7.4:15927478-15927497 | None:intergenic | 35.0% | |
| TCCTCTTGAAATGAAGAACT+GGG | + | chr7.4:15927219-15927238 | MS.gene072390:CDS | 35.0% | |
| TGGAATAAGAGTTAAGCCTA+TGG | + | chr7.4:15927246-15927265 | MS.gene072390:CDS | 35.0% | |
| TGGATGAGGTTTCTTGTAAT+TGG | + | chr7.4:15926801-15926820 | MS.gene072390:CDS | 35.0% | |
| TGTGGAAAACACGAAAGAAA+TGG | + | chr7.4:15927339-15927358 | MS.gene072390:CDS | 35.0% | |
| ! | AAGACAACTAAGAGTTTGCT+TGG | + | chr7.4:15927148-15927167 | MS.gene072390:CDS | 35.0% |
| !!! | ACTCTCGATGATTGGTTTTT+TGG | + | chr7.4:15926940-15926959 | MS.gene072390:CDS | 35.0% |
| !!! | ATGGTGATTTTGATAGTGGT+TGG | + | chr7.4:15926762-15926781 | MS.gene072390:CDS | 35.0% |
| !!! | CAAGTTTTTTGCCAACTTGA+GGG | + | chr7.4:15927030-15927049 | MS.gene072390:CDS | 35.0% |
| !!! | GGTTTTGGTTTCGAAGATTA+AGG | + | chr7.4:15926601-15926620 | MS.gene072390:CDS | 35.0% |
| !!! | TCAAGTTTTTTGCCAACTTG+AGG | + | chr7.4:15927029-15927048 | MS.gene072390:CDS | 35.0% |
| !!! | TTGGATTCAGTGGCATTTTT+TGG | + | chr7.4:15926781-15926800 | MS.gene072390:CDS | 35.0% |
| AACTTGACCATCGAAATCTG+TGG | - | chr7.4:15927016-15927035 | None:intergenic | 40.0% | |
| ACCCAGTTCTTCATTTCAAG+AGG | - | chr7.4:15927223-15927242 | None:intergenic | 40.0% | |
| GAAATGAAGAACTGGGTTCT+TGG | + | chr7.4:15927226-15927245 | MS.gene072390:CDS | 40.0% | |
| GACAACCTAAGCTTAACTCT+TGG | - | chr7.4:15927595-15927614 | None:intergenic | 40.0% | |
| GAGATGGAAGCTAAAGAGAT+TGG | + | chr7.4:15927079-15927098 | MS.gene072390:CDS | 40.0% | |
| GCTTCTGACTGAAATTGAGA+TGG | + | chr7.4:15927063-15927082 | MS.gene072390:CDS | 40.0% | |
| GTTGCTTGAATGTAGGTAAG+AGG | + | chr7.4:15927170-15927189 | MS.gene072390:CDS | 40.0% | |
| TACCACACTCTGTGTAACTA+TGG | + | chr7.4:15926512-15926531 | MS.gene072390:CDS | 40.0% | |
| TGGAAACTCGAGAAACAAGA+GGG | - | chr7.4:15926996-15927015 | None:intergenic | 40.0% | |
| TGGTTTCAGTGAGAAACAGT+TGG | + | chr7.4:15926862-15926881 | MS.gene072390:CDS | 40.0% | |
| TTGCTTGGTTGCTTGAATGT+AGG | + | chr7.4:15927163-15927182 | MS.gene072390:CDS | 40.0% | |
| TTGTGCTTGCTTTCGAATGT+TGG | + | chr7.4:15926842-15926861 | MS.gene072390:CDS | 40.0% | |
| ! | ATTTTCCCCATTTTGGATCG+AGG | - | chr7.4:15926542-15926561 | None:intergenic | 40.0% |
| ! | TTTAAGGCGTTCAGAGGTAA+GGG | + | chr7.4:15927370-15927389 | MS.gene072390:CDS | 40.0% |
| !! | AGAAATGGATTGGGCGTTTA+AGG | + | chr7.4:15927354-15927373 | MS.gene072390:CDS | 40.0% |
| !! | GGTGATGGTGATTTTGATAG+TGG | + | chr7.4:15926758-15926777 | MS.gene072390:CDS | 40.0% |
| !! | TAAGCCTATGGTTGGCTTAA+GGG | + | chr7.4:15927258-15927277 | MS.gene072390:CDS | 40.0% |
| !! | TTAAGCCTATGGTTGGCTTA+AGG | + | chr7.4:15927257-15927276 | MS.gene072390:CDS | 40.0% |
| !! | TTGATAGTGGTTGGATTCAG+TGG | + | chr7.4:15926771-15926790 | MS.gene072390:CDS | 40.0% |
| !!! | TCAGTGGCATTTTTTGGATG+AGG | + | chr7.4:15926787-15926806 | MS.gene072390:CDS | 40.0% |
| AATGCTGTTGCTGTAAGTCC+AGG | + | chr7.4:15926662-15926681 | MS.gene072390:CDS | 45.0% | |
| ACAGAGTTCTTGTTGCGCTT+AGG | + | chr7.4:15927313-15927332 | MS.gene072390:CDS | 45.0% | |
| AGATCCCTTAAGCCAACCAT+AGG | - | chr7.4:15927265-15927284 | None:intergenic | 45.0% | |
| ATCTGGAAGAGGAGAAATCG+AGG | + | chr7.4:15927281-15927300 | MS.gene072390:CDS | 45.0% | |
| ATGCTGTTGCTGTAAGTCCA+GGG | + | chr7.4:15926663-15926682 | MS.gene072390:CDS | 45.0% | |
| ATTGTTGCAAAGGGTGGTGA+TGG | + | chr7.4:15926743-15926762 | MS.gene072390:CDS | 45.0% | |
| CACCATAGTTACACAGAGTG+TGG | - | chr7.4:15926517-15926536 | None:intergenic | 45.0% | |
| CAGTTGGCTGAGATTATTCG+CGG | + | chr7.4:15926878-15926897 | MS.gene072390:CDS | 45.0% | |
| CGAGTTTCCACAGATTTCGA+TGG | + | chr7.4:15927006-15927025 | MS.gene072390:CDS | 45.0% | |
| CTTGTTGCGCTTAGGTTATG+TGG | + | chr7.4:15927321-15927340 | MS.gene072390:CDS | 45.0% | |
| GCAACTCTTCCCAAACTTGA+AGG | - | chr7.4:15927735-15927754 | None:intergenic | 45.0% | |
| GGTGTTCCTCGATCCAAAAT+GGG | + | chr7.4:15926533-15926552 | MS.gene072390:CDS | 45.0% | |
| GTGGAAACTCGAGAAACAAG+AGG | - | chr7.4:15926997-15927016 | None:intergenic | 45.0% | |
| GTGTTCCTCGATCCAAAATG+GGG | + | chr7.4:15926534-15926553 | MS.gene072390:CDS | 45.0% | |
| TATGTAAAACGCCATCCGTC+TGG | + | chr7.4:15927709-15927728 | MS.gene072390:CDS | 45.0% | |
| TCTGGAAGAGGAGAAATCGA+GGG | + | chr7.4:15927282-15927301 | MS.gene072390:CDS | 45.0% | |
| TGGTGTTCCTCGATCCAAAA+TGG | + | chr7.4:15926532-15926551 | MS.gene072390:CDS | 45.0% | |
| ! | GTTTAAGGCGTTCAGAGGTA+AGG | + | chr7.4:15927369-15927388 | MS.gene072390:CDS | 45.0% |
| !! | ATAACTGGCTCGTAGACCAT+GGG | + | chr7.4:15927620-15927639 | MS.gene072390:CDS | 45.0% |
| !! | TATAACTGGCTCGTAGACCA+TGG | + | chr7.4:15927619-15927638 | MS.gene072390:CDS | 45.0% |
| !! | TATGGTTGGCTTAAGGGATC+TGG | + | chr7.4:15927264-15927283 | MS.gene072390:CDS | 45.0% |
| AAACTTGAAGGCCAGACGGA+TGG | - | chr7.4:15927723-15927742 | None:intergenic | 50.0% | |
| AAGAGGAGAAATCGAGGGTG+GGG | + | chr7.4:15927287-15927306 | MS.gene072390:CDS | 50.0% | |
| AATGGTGCTCAAAGCAAGCC+CGG | - | chr7.4:15927656-15927675 | None:intergenic | 50.0% | |
| ACATCACCAACCAGAATCCC+TGG | - | chr7.4:15926683-15926702 | None:intergenic | 50.0% | |
| CAGTCTCACACAGTACTTGC+GGG | + | chr7.4:15927112-15927131 | MS.gene072390:CDS | 50.0% | |
| CCAGTCTCACACAGTACTTG+CGG | + | chr7.4:15927111-15927130 | MS.gene072390:CDS | 50.0% | |
| CGAGAAACAAGAGGGCAATC+TGG | - | chr7.4:15926988-15927007 | None:intergenic | 50.0% | |
| CTGAAGACACACCCTCAAGT+TGG | - | chr7.4:15927044-15927063 | None:intergenic | 50.0% | |
| GAAGAGGAGAAATCGAGGGT+GGG | + | chr7.4:15927286-15927305 | MS.gene072390:CDS | 50.0% | |
| GCGTCTATGTAGCATACTGC+AGG | + | chr7.4:15927192-15927211 | MS.gene072390:CDS | 50.0% | |
| GGCAAGACACTCTCGATGAT+TGG | + | chr7.4:15926932-15926951 | MS.gene072390:CDS | 50.0% | |
| GTAAGTCCAGGGATTCTGGT+TGG | + | chr7.4:15926674-15926693 | MS.gene072390:CDS | 50.0% | |
| TCCCAAACTTGAAGGCCAGA+CGG | - | chr7.4:15927727-15927746 | None:intergenic | 50.0% | |
| TGCTGTAAGTCCAGGGATTC+TGG | + | chr7.4:15926670-15926689 | MS.gene072390:CDS | 50.0% | |
| TGGCTTAAGGGATCTGGAAG+AGG | + | chr7.4:15927270-15927289 | MS.gene072390:CDS | 50.0% | |
| ! | ATCCGTCTGGCCTTCAAGTT+TGG | + | chr7.4:15927722-15927741 | MS.gene072390:CDS | 50.0% |
| ! | TCCGTCTGGCCTTCAAGTTT+GGG | + | chr7.4:15927723-15927742 | MS.gene072390:CDS | 50.0% |
| !! | TAACTGGCTCGTAGACCATG+GGG | + | chr7.4:15927621-15927640 | MS.gene072390:CDS | 50.0% |
| ACCATGGGGCTGTAAATCCC+GGG | + | chr7.4:15927635-15927654 | MS.gene072390:CDS | 55.0% | |
| AGGTAAGGGAGCTGAGCTTC+AGG | + | chr7.4:15927384-15927403 | MS.gene072390:CDS | 55.0% | |
| ATGGTGCTCAAAGCAAGCCC+GGG | - | chr7.4:15927655-15927674 | None:intergenic | 55.0% | |
| GACCATGGGGCTGTAAATCC+CGG | + | chr7.4:15927634-15927653 | MS.gene072390:CDS | 55.0% | |
| GGAAGAGGAGAAATCGAGGG+TGG | + | chr7.4:15927285-15927304 | MS.gene072390:CDS | 55.0% | |
| ! | CCGCAAGTACTGTGTGAGAC+TGG | - | chr7.4:15927114-15927133 | None:intergenic | 55.0% |
| ! | TGGGCGTTTAAGGCGTTCAG+AGG | + | chr7.4:15927364-15927383 | MS.gene072390:CDS | 55.0% |
| GCCCGGGATTTACAGCCCCA+TGG | - | chr7.4:15927639-15927658 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 15926503 | 15927783 | 15926503 | ID=MS.gene072390 |
| chr7.4 | mRNA | 15926503 | 15927783 | 15926503 | ID=MS.gene072390.t1;Parent=MS.gene072390 |
| chr7.4 | exon | 15926503 | 15927783 | 15926503 | ID=MS.gene072390.t1.exon1;Parent=MS.gene072390.t1 |
| chr7.4 | CDS | 15926503 | 15927783 | 15926503 | ID=cds.MS.gene072390.t1;Parent=MS.gene072390.t1 |
| Gene Sequence |
| Protein sequence |
