Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07241.t1 | RHN81081.1 | 96.3 | 135 | 5 | 0 | 378 | 512 | 448 | 582 | 1.10E-67 | 267.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07241.t1 | Q9FZ35 | 35.9 | 131 | 76 | 3 | 380 | 509 | 207 | 330 | 9.0e-18 | 93.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07241.t1 | G7IEK6 | 96.3 | 135 | 5 | 0 | 378 | 512 | 448 | 582 | 8.0e-68 | 267.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene07241 | 0.835297 | 1.82E-56 | -1.69E-46 |
| MS.gene054277 | MS.gene07241 | 0.843996 | 9.94E-59 | -1.69E-46 |
| MS.gene054742 | MS.gene07241 | 0.828516 | 8.61E-55 | -1.69E-46 |
| MS.gene055215 | MS.gene07241 | 0.849272 | 3.60E-60 | -1.69E-46 |
| MS.gene056330 | MS.gene07241 | 0.81736 | 3.43E-52 | -1.69E-46 |
| MS.gene056920 | MS.gene07241 | 0.851505 | 8.49E-61 | -1.69E-46 |
| MS.gene056922 | MS.gene07241 | 0.809604 | 1.74E-50 | -1.69E-46 |
| MS.gene056923 | MS.gene07241 | 0.816131 | 6.48E-52 | -1.69E-46 |
| MS.gene056924 | MS.gene07241 | 0.824284 | 8.77E-54 | -1.69E-46 |
| MS.gene058381 | MS.gene07241 | 0.806585 | 7.66E-50 | -1.69E-46 |
| MS.gene059039 | MS.gene07241 | 0.816864 | 4.44E-52 | -1.69E-46 |
| MS.gene060087 | MS.gene07241 | 0.815823 | 7.59E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07241.t1 | MTR_1g088110 | 79.725 | 582 | 48 | 2 | 1 | 512 | 1 | 582 | 0.0 | 855 |
| MS.gene07241.t1 | MTR_1g087935 | 61.893 | 412 | 155 | 2 | 101 | 510 | 28 | 439 | 3.54e-157 | 455 |
| MS.gene07241.t1 | MTR_1g088130 | 32.450 | 151 | 56 | 3 | 363 | 512 | 30 | 135 | 1.21e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07241.t1 | AT2G47540 | 51.064 | 141 | 61 | 3 | 380 | 512 | 33 | 173 | 2.58e-40 | 144 |
| MS.gene07241.t1 | AT4G02270 | 48.361 | 122 | 62 | 1 | 384 | 504 | 40 | 161 | 1.17e-31 | 120 |
| MS.gene07241.t1 | AT2G47530 | 40.645 | 155 | 74 | 5 | 369 | 509 | 32 | 182 | 3.08e-24 | 100 |
| MS.gene07241.t1 | AT1G54970 | 35.433 | 127 | 75 | 2 | 383 | 509 | 211 | 330 | 1.15e-19 | 90.5 |
| MS.gene07241.t1 | AT3G62680 | 38.525 | 122 | 67 | 4 | 385 | 503 | 187 | 303 | 7.29e-18 | 85.1 |
Find 110 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATACTCATAATCTATTT+TGG | 0.075431 | 1.4:-69977264 | None:intergenic |
| TGCATAGCCATAATCTATTT+TGG | 0.104033 | 1.4:-69976844 | None:intergenic |
| CCCAAATCCAAAACTGATTA+TGG | 0.125943 | 1.4:+69977152 | MS.gene07241:CDS |
| GGCATACTCATAATCTGTTT+TGG | 0.183549 | 1.4:-69977054 | None:intergenic |
| GACTTTGGTTTCTCAATCTT+GGG | 0.198613 | 1.4:-69976978 | None:intergenic |
| GACTTTGGTTTCTCGATCTT+GGG | 0.215411 | 1.4:-69977293 | None:intergenic |
| GCAGGGGCATATTCATAATT+TGG | 0.217355 | 1.4:-69976954 | None:intergenic |
| CTTCTTATCTACTTCAGTTT+GGG | 0.220960 | 1.4:-69976472 | None:intergenic |
| AGACTTTGGTTTCTCGATCT+TGG | 0.227468 | 1.4:-69977294 | None:intergenic |
| GGACTTTGGTTTCTCAATCT+TGG | 0.229209 | 1.4:-69976979 | None:intergenic |
| TTCATAATTTGGTTTAGATT+TGG | 0.231424 | 1.4:-69976943 | None:intergenic |
| AGACTTTGGTTTCTCGATCT+TGG | 0.243845 | 1.4:-69977084 | None:intergenic |
| TTTATAATCTGTATCAAGTT+TGG | 0.255242 | 1.4:-69977408 | None:intergenic |
| AGGTGTTTGTAATATGTTTC+GGG | 0.258454 | 1.4:-69976687 | None:intergenic |
| GACTTTGGTTTCTCGATCTT+GGG | 0.260320 | 1.4:-69977083 | None:intergenic |
| TTCGTAATCTATATCGAGTT+TGG | 0.265120 | 1.4:-69976577 | None:intergenic |
| GGAATAATCATAATTTGATT+TGG | 0.268799 | 1.4:-69977363 | None:intergenic |
| TTGTAATATGTTTCGGGTTC+AGG | 0.269044 | 1.4:-69976681 | None:intergenic |
| ACTTCTTATCTACTTCAGTT+TGG | 0.271626 | 1.4:-69976473 | None:intergenic |
| ACATGTCTCAATCCTGTTAT+AGG | 0.275172 | 1.4:-69977808 | None:intergenic |
| TCATAATTTGGTTTAGATTT+GGG | 0.280504 | 1.4:-69976942 | None:intergenic |
| TCTATAATTTACTTTGGGTT+TGG | 0.285320 | 1.4:-69976631 | None:intergenic |
| CCCAAACCCAAAATAGATTA+TGG | 0.290684 | 1.4:+69976837 | MS.gene07241:CDS |
| GGCATACCCATAATCAGTTT+TGG | 0.293211 | 1.4:-69977159 | None:intergenic |
| ACTATACTCATAATTTGTTT+TGG | 0.297520 | 1.4:-69976532 | None:intergenic |
| GGTTTGGGAACTTTATAGTT+TGG | 0.300710 | 1.4:-69976615 | None:intergenic |
| GAATAATCATAATTTGATTT+GGG | 0.301569 | 1.4:-69977362 | None:intergenic |
| CTATAATTTACTTTGGGTTT+GGG | 0.305045 | 1.4:-69976630 | None:intergenic |
| GACTTAGGCTTCTCAACCTT+TGG | 0.305671 | 1.4:-69976768 | None:intergenic |
| AAGGATAGAGATAGCGAAAA+TGG | 0.312365 | 1.4:-69976373 | None:intergenic |
| GAACTTGGGTTTCTCAATCT+TGG | 0.334089 | 1.4:-69976874 | None:intergenic |
| GGTTTGGGAACTTCATAGTT+TGG | 0.347432 | 1.4:-69977242 | None:intergenic |
| GGTTCAGACTTCTCAGTGTT+TGG | 0.348682 | 1.4:-69976450 | None:intergenic |
| ATCATATCTATAATTTACTT+TGG | 0.350883 | 1.4:-69976637 | None:intergenic |
| GACTTCTCAGTGTTTGGTGC+TGG | 0.357722 | 1.4:-69976444 | None:intergenic |
| AACTTGGGTTTCTCAATCTT+GGG | 0.358481 | 1.4:-69976873 | None:intergenic |
| GGTTGGGGAACTTCATAGTC+TGG | 0.370057 | 1.4:-69976717 | None:intergenic |
| ATGGATATTTAATAACCATT+AGG | 0.377985 | 1.4:-69978069 | None:intergenic |
| TCATATCTATAATTTACTTT+GGG | 0.385548 | 1.4:-69976636 | None:intergenic |
| GGGAACTTCATAGTCTGGTT+TGG | 0.390620 | 1.4:-69976712 | None:intergenic |
| GGTTTGGGAACTTCATAGTC+TGG | 0.391563 | 1.4:-69976822 | None:intergenic |
| GGTTTGGGAACTTCATAGTC+TGG | 0.391563 | 1.4:-69977032 | None:intergenic |
| TTATAATCTGTATCAAGTTT+GGG | 0.394940 | 1.4:-69977407 | None:intergenic |
| GATTTGGGAATTTCATAGTC+TGG | 0.395558 | 1.4:-69977347 | None:intergenic |
| CCCACAATCATTAGTGTTCA+AGG | 0.397118 | 1.4:+69977494 | MS.gene07241:CDS |
| GGCTTCTCAACCTTTGGAGT+TGG | 0.398580 | 1.4:-69976762 | None:intergenic |
| GAGGTGTTTGTAATATGTTT+CGG | 0.407116 | 1.4:-69976688 | None:intergenic |
| TGTGTAAACAACTTCGAACT+TGG | 0.408208 | 1.4:-69976889 | None:intergenic |
| AGTTTGGATTTCTCAACCTC+TGG | 0.412283 | 1.4:-69976561 | None:intergenic |
| GGAACTTTACATGTCTCTAA+TGG | 0.414014 | 1.4:-69977928 | None:intergenic |
| GATTTCTCAACCTCTGGAGT+TGG | 0.415316 | 1.4:-69976555 | None:intergenic |
| GTTTGATGAGTAAACTTCTT+CGG | 0.415435 | 1.4:-69976790 | None:intergenic |
| TCTAATTATTATCCAATTCA+AGG | 0.416895 | 1.4:+69977539 | MS.gene07241:CDS |
| CCAAATCCAAAACTGATTAT+GGG | 0.417568 | 1.4:+69977153 | MS.gene07241:CDS |
| GATAGTAAAGGTTATTACTA+TGG | 0.419539 | 1.4:+69977835 | MS.gene07241:CDS |
| ATAACCATTAGGAACTGGTT+TGG | 0.422058 | 1.4:-69978058 | None:intergenic |
| TATGAGACAGGTCCTATAAC+AGG | 0.429310 | 1.4:+69977796 | MS.gene07241:CDS |
| ATTTAATAACCATTAGGAAC+TGG | 0.429812 | 1.4:-69978063 | None:intergenic |
| GATTTGGGAACTTTATAGTC+AGG | 0.446675 | 1.4:-69977137 | None:intergenic |
| TCCGCAACTGATTATGTGTA+TGG | 0.452263 | 1.4:+69976420 | MS.gene07241:CDS |
| GGTTCAGGTCTCTCTATCTC+TGG | 0.453423 | 1.4:-69976666 | None:intergenic |
| CACACCAAACCCCACAAAAC+CGG | 0.453903 | 1.4:+69976908 | MS.gene07241:CDS |
| GATTTGGGAACTTCATAGTC+CGG | 0.458314 | 1.4:-69976927 | None:intergenic |
| GTGTAAATTACTTCGGACTT+TGG | 0.458447 | 1.4:-69976993 | None:intergenic |
| ACATTGTCACTTGCAGAGTT+GGG | 0.460360 | 1.4:+69977859 | MS.gene07241:CDS |
| GTGTAAACTGCTTCAGACTT+TGG | 0.463749 | 1.4:-69977308 | None:intergenic |
| ATAATCAGTTGCGGAGGCTA+TGG | 0.472736 | 1.4:-69976412 | None:intergenic |
| GGTTTCTCAATCTTGGGAGC+CGG | 0.476195 | 1.4:-69976867 | None:intergenic |
| TGTGTAGACTGCTTCAGACT+TGG | 0.477861 | 1.4:-69977204 | None:intergenic |
| TACATTGTCACTTGCAGAGT+TGG | 0.481374 | 1.4:+69977858 | MS.gene07241:CDS |
| CAAGCCAAACCAGTTCCTAA+TGG | 0.482016 | 1.4:+69978054 | MS.gene07241:CDS |
| GGTCTCTCTATCTCTGGAAC+GGG | 0.487992 | 1.4:-69976660 | None:intergenic |
| GAGTAAACTTCTTCGGACTT+AGG | 0.505884 | 1.4:-69976783 | None:intergenic |
| AGGTGCAATAGAGTACAATC+TGG | 0.512544 | 1.4:-69978016 | None:intergenic |
| ACTTTGGTTTCTCAATCTTG+GGG | 0.512628 | 1.4:-69976977 | None:intergenic |
| GTGTAAACTACTTTAGACTT+TGG | 0.515414 | 1.4:-69977098 | None:intergenic |
| ACTTTGGTTTCTCGATCTTG+GGG | 0.515715 | 1.4:-69977292 | None:intergenic |
| CCCCAACCTAAAATAGACTA+CGG | 0.519581 | 1.4:+69976732 | MS.gene07241:CDS |
| GCTTGCGAGGTGTAGAAGAA+AGG | 0.521342 | 1.4:-69978036 | None:intergenic |
| GTTTGGTGTGTAAATTACTT+CGG | 0.522751 | 1.4:-69977000 | None:intergenic |
| CCTTGAACACTAATGATTGT+GGG | 0.526216 | 1.4:-69977494 | None:intergenic |
| ACTTTGGTTTCTCGATCTTG+GGG | 0.532092 | 1.4:-69977082 | None:intergenic |
| AGGTCTCTCTATCTCTGGAA+CGG | 0.533585 | 1.4:-69976661 | None:intergenic |
| TCCTTGAACACTAATGATTG+TGG | 0.534039 | 1.4:-69977495 | None:intergenic |
| GTGTAAACAACTTCGAACTT+GGG | 0.534608 | 1.4:-69976888 | None:intergenic |
| TGTGAATGTGTGAATGAGCT+TGG | 0.538836 | 1.4:+69977772 | MS.gene07241:CDS |
| TCTCTAATGGAGAACTCTCT+AGG | 0.548355 | 1.4:-69977915 | None:intergenic |
| TTCTTATCTACTTCAGTTTG+GGG | 0.552438 | 1.4:-69976471 | None:intergenic |
| AGGAGACGGTACGAAGAAAG+AGG | 0.555521 | 1.4:-69977982 | None:intergenic |
| AGGAACTGGTTTGGCTTGCG+AGG | 0.559011 | 1.4:-69978049 | None:intergenic |
| TTCACATGTAACTCGTGCTA+CGG | 0.561259 | 1.4:-69977755 | None:intergenic |
| AATCATTAGTGTTCAAGGAG+TGG | 0.567276 | 1.4:+69977499 | MS.gene07241:CDS |
| GAGGAGCACCACTGATGCCA+TGG | 0.576264 | 1.4:-69977963 | None:intergenic |
| CTTCATAGTCTGGTTTGGTG+AGG | 0.576955 | 1.4:-69976707 | None:intergenic |
| CCCAACCTAAAATAGACTAC+GGG | 0.578260 | 1.4:+69976733 | MS.gene07241:CDS |
| ATGCCATGGTTCACATCGGT+GGG | 0.585493 | 1.4:-69977949 | None:intergenic |
| CTTTGGTTTCTCGATCTTGG+GGG | 0.585548 | 1.4:-69977291 | None:intergenic |
| AATGAGCTTGGATATGAGAC+AGG | 0.588969 | 1.4:+69977784 | MS.gene07241:CDS |
| AGACATGTAACAGATAGTAA+AGG | 0.593269 | 1.4:+69977823 | MS.gene07241:CDS |
| CGGGTATAGTCCAACTCCAA+AGG | 0.611610 | 1.4:+69976752 | MS.gene07241:CDS |
| CTTTGGTTTCTCGATCTTGG+GGG | 0.616422 | 1.4:-69977081 | None:intergenic |
| CTTTGGTTTCTCAATCTTGG+GGG | 0.618265 | 1.4:-69976976 | None:intergenic |
| AATAGATTATGGCTATGCAC+CGG | 0.625707 | 1.4:+69976848 | MS.gene07241:CDS |
| GATGCCATGGTTCACATCGG+TGG | 0.630598 | 1.4:-69977950 | None:intergenic |
| GTTCCCACCGATGTGAACCA+TGG | 0.654623 | 1.4:+69977946 | MS.gene07241:CDS |
| ACCATACACATAATCAGTTG+CGG | 0.654626 | 1.4:-69976421 | None:intergenic |
| TGAGTATAGTCCAACTCCAG+AGG | 0.667102 | 1.4:+69976545 | MS.gene07241:CDS |
| GATGTGAACCATGGCATCAG+TGG | 0.673868 | 1.4:+69977955 | MS.gene07241:CDS |
| ACTGATGCCATGGTTCACAT+CGG | 0.694443 | 1.4:-69977953 | None:intergenic |
| ATACACATAATCAGTTGCGG+AGG | 0.697746 | 1.4:-69976418 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATATCTATAATTTACTT+TGG | - | chr1.4:69976640-69976659 | None:intergenic | 15.0% |
| !! | TCATATCTATAATTTACTTT+GGG | - | chr1.4:69976639-69976658 | None:intergenic | 15.0% |
| !!! | GAATAATCATAATTTGATTT+GGG | - | chr1.4:69977365-69977384 | None:intergenic | 15.0% |
| !! | GGAATAATCATAATTTGATT+TGG | - | chr1.4:69977366-69977385 | None:intergenic | 20.0% |
| !! | TCTAACTAACATAAACTAAT+TGG | - | chr1.4:69977675-69977694 | None:intergenic | 20.0% |
| !! | TCTAATTATTATCCAATTCA+AGG | + | chr1.4:69977539-69977558 | MS.gene07241:CDS | 20.0% |
| !! | TTATAATCTGTATCAAGTTT+GGG | - | chr1.4:69977410-69977429 | None:intergenic | 20.0% |
| !! | TTTATAATCTGTATCAAGTT+TGG | - | chr1.4:69977411-69977430 | None:intergenic | 20.0% |
| !!! | ACTATACTCATAATTTGTTT+TGG | - | chr1.4:69976535-69976554 | None:intergenic | 20.0% |
| !!! | GTAAAAAAAGTATTATAGCT+AGG | - | chr1.4:69977617-69977636 | None:intergenic | 20.0% |
| !!! | TCATAATTTGGTTTAGATTT+GGG | - | chr1.4:69976945-69976964 | None:intergenic | 20.0% |
| !!! | TTCATAATTTGGTTTAGATT+TGG | - | chr1.4:69976946-69976965 | None:intergenic | 20.0% |
| ! | GATAGTAAAGGTTATTACTA+TGG | + | chr1.4:69977835-69977854 | MS.gene07241:CDS | 25.0% |
| !! | CTATAATTTACTTTGGGTTT+GGG | - | chr1.4:69976633-69976652 | None:intergenic | 25.0% |
| !! | GCATACTCATAATCTATTTT+GGG | - | chr1.4:69977266-69977285 | None:intergenic | 25.0% |
| !! | TCTATAATTTACTTTGGGTT+TGG | - | chr1.4:69976634-69976653 | None:intergenic | 25.0% |
| !! | TGCATACTCATAATCTATTT+TGG | - | chr1.4:69977267-69977286 | None:intergenic | 25.0% |
| !! | TTTTCGCTTATATGATAGAA+AGG | + | chr1.4:69977566-69977585 | MS.gene07241:intron | 25.0% |
| !!! | CTCATAATTTGTTTTGGATT+TGG | - | chr1.4:69976529-69976548 | None:intergenic | 25.0% |
| !!! | TCATAATCTATTTTGGGTTT+GGG | - | chr1.4:69977260-69977279 | None:intergenic | 25.0% |
| ACTTCTTATCTACTTCAGTT+TGG | - | chr1.4:69976476-69976495 | None:intergenic | 30.0% | |
| AGACATGTAACAGATAGTAA+AGG | + | chr1.4:69977823-69977842 | MS.gene07241:CDS | 30.0% | |
| AGCGAAAAATTACCTTGAAT+TGG | - | chr1.4:69977554-69977573 | None:intergenic | 30.0% | |
| AGGTGTTTGTAATATGTTTC+GGG | - | chr1.4:69976690-69976709 | None:intergenic | 30.0% | |
| CCAAATCCAAAACTGATTAT+GGG | + | chr1.4:69977153-69977172 | MS.gene07241:CDS | 30.0% | |
| CTTCTTATCTACTTCAGTTT+GGG | - | chr1.4:69976475-69976494 | None:intergenic | 30.0% | |
| GTGTAAACTACTTTAGACTT+TGG | - | chr1.4:69977101-69977120 | None:intergenic | 30.0% | |
| GTTTGATGAGTAAACTTCTT+CGG | - | chr1.4:69976793-69976812 | None:intergenic | 30.0% | |
| TTCGTAATCTATATCGAGTT+TGG | - | chr1.4:69976580-69976599 | None:intergenic | 30.0% | |
| TTCTTATCTACTTCAGTTTG+GGG | - | chr1.4:69976474-69976493 | None:intergenic | 30.0% | |
| ! | AACTTTATAGTCAGGTTTTG+TGG | - | chr1.4:69977132-69977151 | None:intergenic | 30.0% |
| ! | GAGGTGTTTGTAATATGTTT+CGG | - | chr1.4:69976691-69976710 | None:intergenic | 30.0% |
| ! | GCATACTCATAATCTGTTTT+GGG | - | chr1.4:69977056-69977075 | None:intergenic | 30.0% |
| ! | GCATAGCCATAATCTATTTT+GGG | - | chr1.4:69976846-69976865 | None:intergenic | 30.0% |
| ! | TGCATAGCCATAATCTATTT+TGG | - | chr1.4:69976847-69976866 | None:intergenic | 30.0% |
| !! | ACAATCTGGAATTGTTTTCA+AGG | - | chr1.4:69978005-69978024 | None:intergenic | 30.0% |
| !! | ACTTGGATTTTTCGATTTTG+GGG | - | chr1.4:69977190-69977209 | None:intergenic | 30.0% |
| !! | ACTTTATAGTCAGGTTTTGT+GGG | - | chr1.4:69977131-69977150 | None:intergenic | 30.0% |
| !! | AGACTTGGATTTTTCGATTT+TGG | - | chr1.4:69977192-69977211 | None:intergenic | 30.0% |
| !! | GACTTGGATTTTTCGATTTT+GGG | - | chr1.4:69977191-69977210 | None:intergenic | 30.0% |
| !! | GTTTGGTGTGTAAATTACTT+CGG | - | chr1.4:69977003-69977022 | None:intergenic | 30.0% |
| !!! | AACTTCATAATCTGGTTTTG+TGG | - | chr1.4:69977441-69977460 | None:intergenic | 30.0% |
| !!! | AACTTCATAGTTTGGTTTTG+TGG | - | chr1.4:69977237-69977256 | None:intergenic | 30.0% |
| !!! | AATTTCATAGTCTGGTTTTG+TGG | - | chr1.4:69977342-69977361 | None:intergenic | 30.0% |
| !!! | ACTTCATAATCTGGTTTTGT+GGG | - | chr1.4:69977440-69977459 | None:intergenic | 30.0% |
| !!! | ACTTCATAGTTTGGTTTTGT+GGG | - | chr1.4:69977236-69977255 | None:intergenic | 30.0% |
| !!! | CCATAATCAGTTTTGGATTT+GGG | - | chr1.4:69977155-69977174 | None:intergenic | 30.0% |
| !!! | CCATAATCTATTTTGGGTTT+GGG | - | chr1.4:69976840-69976859 | None:intergenic | 30.0% |
| !!! | CTCATAATCTATTTTGGGTT+TGG | - | chr1.4:69977261-69977280 | None:intergenic | 30.0% |
| !!! | TCATAATCTGTTTTGGGTTT+GGG | - | chr1.4:69977050-69977069 | None:intergenic | 30.0% |
| !!! | TCGTAGTTTTCTTTTGGTTT+TGG | - | chr1.4:69977464-69977483 | None:intergenic | 30.0% |
| AACTTGGGTTTCTCAATCTT+GGG | - | chr1.4:69976876-69976895 | None:intergenic | 35.0% | |
| AAGGATAGAGATAGCGAAAA+TGG | - | chr1.4:69976376-69976395 | None:intergenic | 35.0% | |
| AATAGATTATGGCTATGCAC+CGG | + | chr1.4:69976848-69976867 | MS.gene07241:CDS | 35.0% | |
| AATCATTAGTGTTCAAGGAG+TGG | + | chr1.4:69977499-69977518 | MS.gene07241:CDS | 35.0% | |
| ACATGTCTCAATCCTGTTAT+AGG | - | chr1.4:69977811-69977830 | None:intergenic | 35.0% | |
| ACCATACACATAATCAGTTG+CGG | - | chr1.4:69976424-69976443 | None:intergenic | 35.0% | |
| ATAACCATTAGGAACTGGTT+TGG | - | chr1.4:69978061-69978080 | None:intergenic | 35.0% | |
| CCCAAACCCAAAATAGATTA+TGG | + | chr1.4:69976837-69976856 | MS.gene07241:CDS | 35.0% | |
| CCCAAATCCAAAACTGATTA+TGG | + | chr1.4:69977152-69977171 | MS.gene07241:CDS | 35.0% | |
| CCTTGAACACTAATGATTGT+GGG | - | chr1.4:69977497-69977516 | None:intergenic | 35.0% | |
| GATTTGGGAACTTTATAGTC+AGG | - | chr1.4:69977140-69977159 | None:intergenic | 35.0% | |
| GATTTGGGAATTTCATAGTC+TGG | - | chr1.4:69977350-69977369 | None:intergenic | 35.0% | |
| GGAACTTTACATGTCTCTAA+TGG | - | chr1.4:69977931-69977950 | None:intergenic | 35.0% | |
| GGTTTGGGAACTTTATAGTT+TGG | - | chr1.4:69976618-69976637 | None:intergenic | 35.0% | |
| GTGTAAACAACTTCGAACTT+GGG | - | chr1.4:69976891-69976910 | None:intergenic | 35.0% | |
| GTGTAAATTACTTCGGACTT+TGG | - | chr1.4:69976996-69977015 | None:intergenic | 35.0% | |
| TATCATGTGTGAGAAATGCA+GGG | + | chr1.4:69977731-69977750 | MS.gene07241:intron | 35.0% | |
| TCCTTGAACACTAATGATTG+TGG | - | chr1.4:69977498-69977517 | None:intergenic | 35.0% | |
| TGTGTAAACAACTTCGAACT+TGG | - | chr1.4:69976892-69976911 | None:intergenic | 35.0% | |
| TTATCATGTGTGAGAAATGC+AGG | + | chr1.4:69977730-69977749 | MS.gene07241:intron | 35.0% | |
| ! | ACTTTGGTTTCTCAATCTTG+GGG | - | chr1.4:69976980-69976999 | None:intergenic | 35.0% |
| ! | CTATACCCGTAGTCTATTTT+AGG | - | chr1.4:69976741-69976760 | None:intergenic | 35.0% |
| ! | GACTTTGGTTTCTCAATCTT+GGG | - | chr1.4:69976981-69977000 | None:intergenic | 35.0% |
| ! | GGCATACTCATAATCTGTTT+TGG | - | chr1.4:69977057-69977076 | None:intergenic | 35.0% |
| ! | TGCACTTCGTAGTTTTCTTT+TGG | - | chr1.4:69977470-69977489 | None:intergenic | 35.0% |
| !! | AGTTTGGGTTTCTCGATTTT+TGG | - | chr1.4:69977395-69977414 | None:intergenic | 35.0% |
| !! | CTTGGATTTTTCGATTTTGG+GGG | - | chr1.4:69977189-69977208 | None:intergenic | 35.0% |
| !! | CTTTATAGTCAGGTTTTGTG+GGG | - | chr1.4:69977130-69977149 | None:intergenic | 35.0% |
| !! | TGGAATTGTTTTCAAGGAGA+CGG | - | chr1.4:69977999-69978018 | None:intergenic | 35.0% |
| !! | TTGTAATATGTTTCGGGTTC+AGG | - | chr1.4:69976684-69976703 | None:intergenic | 35.0% |
| !!! | AACTTCATAGTCTGGTTTTG+TGG | - | chr1.4:69976817-69976836 | None:intergenic | 35.0% |
| !!! | ACTTCATAGTCTGGTTTTGT+GGG | - | chr1.4:69976816-69976835 | None:intergenic | 35.0% |
| !!! | CCCATAATCAGTTTTGGATT+TGG | - | chr1.4:69977156-69977175 | None:intergenic | 35.0% |
| !!! | CTCATAATCTGTTTTGGGTT+TGG | - | chr1.4:69977051-69977070 | None:intergenic | 35.0% |
| !!! | CTTCATAATCTGGTTTTGTG+GGG | - | chr1.4:69977439-69977458 | None:intergenic | 35.0% |
| !!! | CTTCATAGTTTGGTTTTGTG+GGG | - | chr1.4:69977235-69977254 | None:intergenic | 35.0% |
| !!! | GCCATAATCTATTTTGGGTT+TGG | - | chr1.4:69976841-69976860 | None:intergenic | 35.0% |
| !!! | GGTTTTGGAACTTCATAATC+TGG | - | chr1.4:69977449-69977468 | None:intergenic | 35.0% |
| !!! | GTTTCTCGATTTTTGGTGTT+GGG | - | chr1.4:69977388-69977407 | None:intergenic | 35.0% |
| !!! | TAGTCTGGTTTTGTGGATTT+TGG | - | chr1.4:69977335-69977354 | None:intergenic | 35.0% |
| !!! | TTTCTCGATTTTTGGTGTTG+GGG | - | chr1.4:69977387-69977406 | None:intergenic | 35.0% |
| AATGAGCTTGGATATGAGAC+AGG | + | chr1.4:69977784-69977803 | MS.gene07241:CDS | 40.0% | |
| AGGTGCAATAGAGTACAATC+TGG | - | chr1.4:69978019-69978038 | None:intergenic | 40.0% | |
| AGTTTGGATTTCTCAACCTC+TGG | - | chr1.4:69976564-69976583 | None:intergenic | 40.0% | |
| ATACACATAATCAGTTGCGG+AGG | - | chr1.4:69976421-69976440 | None:intergenic | 40.0% | |
| ATCATGTGTGAGAAATGCAG+GGG | + | chr1.4:69977732-69977751 | MS.gene07241:intron | 40.0% | |
| CCCAACCTAAAATAGACTAC+GGG | + | chr1.4:69976733-69976752 | MS.gene07241:CDS | 40.0% | |
| CCCACAATCATTAGTGTTCA+AGG | + | chr1.4:69977494-69977513 | MS.gene07241:CDS | 40.0% | |
| CCCCAACCTAAAATAGACTA+CGG | + | chr1.4:69976732-69976751 | MS.gene07241:CDS | 40.0% | |
| GAACTTGGGTTTCTCAATCT+TGG | - | chr1.4:69976877-69976896 | None:intergenic | 40.0% | |
| GAGTAAACTTCTTCGGACTT+AGG | - | chr1.4:69976786-69976805 | None:intergenic | 40.0% | |
| GATTTGGGAACTTCATAGTC+CGG | - | chr1.4:69976930-69976949 | None:intergenic | 40.0% | |
| GGTTTGGGAACTTCATAGTT+TGG | - | chr1.4:69977245-69977264 | None:intergenic | 40.0% | |
| GTGTAAACTGCTTCAGACTT+TGG | - | chr1.4:69977311-69977330 | None:intergenic | 40.0% | |
| TATGAGACAGGTCCTATAAC+AGG | + | chr1.4:69977796-69977815 | MS.gene07241:CDS | 40.0% | |
| TCCGCAACTGATTATGTGTA+TGG | + | chr1.4:69976420-69976439 | MS.gene07241:CDS | 40.0% | |
| TCTCTAATGGAGAACTCTCT+AGG | - | chr1.4:69977918-69977937 | None:intergenic | 40.0% | |
| TGTGAATGTGTGAATGAGCT+TGG | + | chr1.4:69977772-69977791 | MS.gene07241:CDS | 40.0% | |
| TTCACATGTAACTCGTGCTA+CGG | - | chr1.4:69977758-69977777 | None:intergenic | 40.0% | |
| ! | AACTTCATAGTCCGGTTTTG+TGG | - | chr1.4:69976922-69976941 | None:intergenic | 40.0% |
| ! | ACATTGTCACTTGCAGAGTT+GGG | + | chr1.4:69977859-69977878 | MS.gene07241:CDS | 40.0% |
| ! | ACTTTGGTTTCTCGATCTTG+GGG | - | chr1.4:69977085-69977104 | None:intergenic | 40.0% |
| ! | AGACTTTGGTTTCTCGATCT+TGG | - | chr1.4:69977087-69977106 | None:intergenic | 40.0% |
| ! | CTTTGGTTTCTCAATCTTGG+GGG | - | chr1.4:69976979-69976998 | None:intergenic | 40.0% |
| ! | GACTTTGGTTTCTCGATCTT+GGG | - | chr1.4:69977086-69977105 | None:intergenic | 40.0% |
| ! | GCAGGGGCATATTCATAATT+TGG | - | chr1.4:69976957-69976976 | None:intergenic | 40.0% |
| ! | GGACTTTGGTTTCTCAATCT+TGG | - | chr1.4:69976982-69977001 | None:intergenic | 40.0% |
| ! | GGCATACCCATAATCAGTTT+TGG | - | chr1.4:69977162-69977181 | None:intergenic | 40.0% |
| ! | TACATTGTCACTTGCAGAGT+TGG | + | chr1.4:69977858-69977877 | MS.gene07241:CDS | 40.0% |
| !! | ACCCGTAGTCTATTTTAGGT+TGG | - | chr1.4:69976737-69976756 | None:intergenic | 40.0% |
| !! | ACTTCATAGTCCGGTTTTGT+GGG | - | chr1.4:69976921-69976940 | None:intergenic | 40.0% |
| !! | ATTTTTCGATTTTGGGGGTC+GGG | - | chr1.4:69977184-69977203 | None:intergenic | 40.0% |
| !! | GATTTTTCGATTTTGGGGGT+CGG | - | chr1.4:69977185-69977204 | None:intergenic | 40.0% |
| !!! | CCCGTAGTCTATTTTAGGTT+GGG | - | chr1.4:69976736-69976755 | None:intergenic | 40.0% |
| !!! | CCGTAGTCTATTTTAGGTTG+GGG | - | chr1.4:69976735-69976754 | None:intergenic | 40.0% |
| !!! | CTTCATAGTCTGGTTTTGTG+GGG | - | chr1.4:69976815-69976834 | None:intergenic | 40.0% |
| !!! | GGAGTGGTTTTGTGTAAATC+TGG | + | chr1.4:69977515-69977534 | MS.gene07241:CDS | 40.0% |
| !!! | GGTTTCTCGATTTTTGGTGT+TGG | - | chr1.4:69977389-69977408 | None:intergenic | 40.0% |
| !!! | TAGTTTGGTTTTGTGGGGTT+TGG | - | chr1.4:69977230-69977249 | None:intergenic | 40.0% |
| ACTGATGCCATGGTTCACAT+CGG | - | chr1.4:69977956-69977975 | None:intergenic | 45.0% | |
| ATAATCAGTTGCGGAGGCTA+TGG | - | chr1.4:69976415-69976434 | None:intergenic | 45.0% | |
| CAAGCCAAACCAGTTCCTAA+TGG | + | chr1.4:69978054-69978073 | MS.gene07241:CDS | 45.0% | |
| GACTTAGGCTTCTCAACCTT+TGG | - | chr1.4:69976771-69976790 | None:intergenic | 45.0% | |
| GGGAACTTCATAGTCTGGTT+TGG | - | chr1.4:69976715-69976734 | None:intergenic | 45.0% | |
| GGTTCAGACTTCTCAGTGTT+TGG | - | chr1.4:69976453-69976472 | None:intergenic | 45.0% | |
| GGTTTGGGAACTTCATAGTC+TGG | - | chr1.4:69976825-69976844 | None:intergenic | 45.0% | |
| TGAGTATAGTCCAACTCCAG+AGG | + | chr1.4:69976545-69976564 | MS.gene07241:CDS | 45.0% | |
| TGGCTAGCAACGCAAAAAGA+AGG | - | chr1.4:69976395-69976414 | None:intergenic | 45.0% | |
| TGTGTAGACTGCTTCAGACT+TGG | - | chr1.4:69977207-69977226 | None:intergenic | 45.0% | |
| ! | AGGTCTCTCTATCTCTGGAA+CGG | - | chr1.4:69976664-69976683 | None:intergenic | 45.0% |
| ! | CTTTGGTTTCTCGATCTTGG+GGG | - | chr1.4:69977084-69977103 | None:intergenic | 45.0% |
| !! | CTTCATAGTCCGGTTTTGTG+GGG | - | chr1.4:69976920-69976939 | None:intergenic | 45.0% |
| !! | CTTCATAGTCTGGTTTGGTG+AGG | - | chr1.4:69976710-69976729 | None:intergenic | 45.0% |
| !! | GATTTCTCAACCTCTGGAGT+TGG | - | chr1.4:69976558-69976577 | None:intergenic | 45.0% |
| !! | TTTTTCGATTTTGGGGGTCG+GGG | - | chr1.4:69977183-69977202 | None:intergenic | 45.0% |
| !!! | TAGTCTGGTTTTGTGGGGTT+TGG | - | chr1.4:69976810-69976829 | None:intergenic | 45.0% |
| AGGAGACGGTACGAAGAAAG+AGG | - | chr1.4:69977985-69978004 | None:intergenic | 50.0% | |
| ATGCCATGGTTCACATCGGT+GGG | - | chr1.4:69977952-69977971 | None:intergenic | 50.0% | |
| CACACCAAACCCCACAAAAC+CGG | + | chr1.4:69976908-69976927 | MS.gene07241:CDS | 50.0% | |
| CGGGTATAGTCCAACTCCAA+AGG | + | chr1.4:69976752-69976771 | MS.gene07241:CDS | 50.0% | |
| GATGTGAACCATGGCATCAG+TGG | + | chr1.4:69977955-69977974 | MS.gene07241:CDS | 50.0% | |
| GCTTGCGAGGTGTAGAAGAA+AGG | - | chr1.4:69978039-69978058 | None:intergenic | 50.0% | |
| GGTTCAGGTCTCTCTATCTC+TGG | - | chr1.4:69976669-69976688 | None:intergenic | 50.0% | |
| GGTTGGGGAACTTCATAGTC+TGG | - | chr1.4:69976720-69976739 | None:intergenic | 50.0% | |
| GGTTTCTCAATCTTGGGAGC+CGG | - | chr1.4:69976870-69976889 | None:intergenic | 50.0% | |
| GTTTCTCAATCTTGGGGGCA+GGG | - | chr1.4:69976974-69976993 | None:intergenic | 50.0% | |
| TTTCTCAATCTTGGGGGCAG+GGG | - | chr1.4:69976973-69976992 | None:intergenic | 50.0% | |
| !! | GACTTCTCAGTGTTTGGTGC+TGG | - | chr1.4:69976447-69976466 | None:intergenic | 50.0% |
| !! | GGCTTCTCAACCTTTGGAGT+TGG | - | chr1.4:69976765-69976784 | None:intergenic | 50.0% |
| !! | GGTCTCTCTATCTCTGGAAC+GGG | - | chr1.4:69976663-69976682 | None:intergenic | 50.0% |
| !! | TAGTCCGGTTTTGTGGGGTT+TGG | - | chr1.4:69976915-69976934 | None:intergenic | 50.0% |
| GATGCCATGGTTCACATCGG+TGG | - | chr1.4:69977953-69977972 | None:intergenic | 55.0% | |
| GGTTTCTCAATCTTGGGGGC+AGG | - | chr1.4:69976975-69976994 | None:intergenic | 55.0% | |
| GTTCCCACCGATGTGAACCA+TGG | + | chr1.4:69977946-69977965 | MS.gene07241:CDS | 55.0% | |
| GTTTCTCGATCTTGGGGGCT+GGG | - | chr1.4:69977079-69977098 | None:intergenic | 55.0% | |
| TTTCTCGATCTTGGGGGCTG+GGG | - | chr1.4:69977078-69977097 | None:intergenic | 55.0% | |
| !! | AGGAACTGGTTTGGCTTGCG+AGG | - | chr1.4:69978052-69978071 | None:intergenic | 55.0% |
| GGTTTCTCGATCTTGGGGGC+TGG | - | chr1.4:69977080-69977099 | None:intergenic | 60.0% | |
| !! | GAGGAGCACCACTGATGCCA+TGG | - | chr1.4:69977966-69977985 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 69976354 | 69978083 | 69976354 | ID=MS.gene07241 |
| chr1.4 | mRNA | 69976354 | 69978083 | 69976354 | ID=MS.gene07241.t1;Parent=MS.gene07241 |
| chr1.4 | exon | 69976354 | 69977560 | 69976354 | ID=MS.gene07241.t1.exon1;Parent=MS.gene07241.t1 |
| chr1.4 | CDS | 69976354 | 69977560 | 69976354 | ID=cds.MS.gene07241.t1;Parent=MS.gene07241.t1 |
| chr1.4 | exon | 69977752 | 69978083 | 69977752 | ID=MS.gene07241.t1.exon2;Parent=MS.gene07241.t1 |
| chr1.4 | CDS | 69977752 | 69978083 | 69977752 | ID=cds.MS.gene07241.t1;Parent=MS.gene07241.t1 |
| Gene Sequence |
| Protein sequence |
