Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072546.t1 | XP_003626177.1 | 98.2 | 164 | 3 | 0 | 1 | 164 | 1 | 164 | 1.80E-83 | 318.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072546.t1 | Q8WWF6 | 57.6 | 66 | 25 | 1 | 17 | 82 | 4 | 66 | 2.8e-13 | 76.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072546.t1 | G7KWI3 | 98.2 | 164 | 3 | 0 | 1 | 164 | 1 | 164 | 1.3e-83 | 318.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050743 | MS.gene072546 | 0.918014 | 2.63E-86 | -1.69E-46 |
| MS.gene050946 | MS.gene072546 | 0.916426 | 1.81E-85 | -1.69E-46 |
| MS.gene054412 | MS.gene072546 | 0.955433 | 3.07E-113 | -1.69E-46 |
| MS.gene057249 | MS.gene072546 | 0.843241 | 1.58E-58 | -1.69E-46 |
| MS.gene058551 | MS.gene072546 | 0.858257 | 9.32E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038416 | MS.gene072546 | PPI |
| MS.gene072546 | MS.gene062293 | PPI |
| MS.gene017181 | MS.gene072546 | PPI |
| MS.gene065503 | MS.gene072546 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072546.t1 | MTR_7g112360 | 98.171 | 164 | 3 | 0 | 1 | 164 | 1 | 164 | 4.10e-120 | 335 |
| MS.gene072546.t1 | MTR_7g112360 | 98.936 | 94 | 1 | 0 | 1 | 94 | 1 | 94 | 3.60e-65 | 195 |
| MS.gene072546.t1 | MTR_4g085070 | 60.360 | 111 | 42 | 1 | 22 | 130 | 18 | 128 | 1.23e-41 | 137 |
| MS.gene072546.t1 | MTR_8g022310 | 45.113 | 133 | 66 | 4 | 8 | 134 | 2 | 133 | 4.80e-33 | 116 |
| MS.gene072546.t1 | MTR_8g022310 | 45.113 | 133 | 66 | 4 | 8 | 134 | 2 | 133 | 1.15e-32 | 115 |
| MS.gene072546.t1 | MTR_8g022310 | 45.113 | 133 | 66 | 4 | 8 | 134 | 2 | 133 | 1.57e-32 | 116 |
| MS.gene072546.t1 | MTR_8g022310 | 45.113 | 133 | 66 | 4 | 8 | 134 | 2 | 133 | 1.85e-32 | 115 |
| MS.gene072546.t1 | MTR_3g108020 | 53.030 | 66 | 28 | 1 | 17 | 82 | 5 | 67 | 1.10e-18 | 81.3 |
| MS.gene072546.t1 | MTR_2g090705 | 53.030 | 66 | 28 | 1 | 17 | 82 | 5 | 67 | 1.48e-17 | 78.6 |
| MS.gene072546.t1 | MTR_4g078850 | 48.485 | 66 | 31 | 1 | 17 | 82 | 5 | 67 | 5.65e-17 | 77.0 |
| MS.gene072546.t1 | MTR_2g014470 | 46.970 | 66 | 32 | 1 | 17 | 82 | 5 | 67 | 7.74e-17 | 76.3 |
| MS.gene072546.t1 | MTR_4g015840 | 53.030 | 66 | 28 | 1 | 17 | 82 | 5 | 67 | 1.31e-16 | 75.9 |
| MS.gene072546.t1 | MTR_1g110310 | 40.000 | 90 | 50 | 1 | 1 | 90 | 1 | 86 | 4.75e-16 | 74.7 |
| MS.gene072546.t1 | MTR_4g109510 | 45.588 | 68 | 37 | 0 | 16 | 83 | 8 | 75 | 4.83e-16 | 74.7 |
| MS.gene072546.t1 | MTR_2g014480 | 48.485 | 66 | 31 | 1 | 17 | 82 | 5 | 67 | 5.24e-16 | 74.3 |
| MS.gene072546.t1 | MTR_5g037880 | 44.286 | 70 | 35 | 1 | 17 | 82 | 6 | 75 | 5.05e-15 | 70.9 |
| MS.gene072546.t1 | MTR_6g027110 | 44.776 | 67 | 36 | 1 | 17 | 82 | 3 | 69 | 6.98e-15 | 68.2 |
| MS.gene072546.t1 | MTR_7g101070 | 48.529 | 68 | 32 | 1 | 17 | 84 | 359 | 423 | 7.98e-15 | 71.2 |
| MS.gene072546.t1 | MTR_1g052110 | 44.737 | 76 | 38 | 2 | 7 | 82 | 29 | 100 | 2.59e-14 | 68.9 |
| MS.gene072546.t1 | MTR_3g087030 | 50.000 | 66 | 28 | 2 | 17 | 82 | 83 | 143 | 2.65e-14 | 69.7 |
| MS.gene072546.t1 | MTR_7g092380 | 50.769 | 65 | 28 | 2 | 18 | 82 | 24 | 84 | 5.91e-14 | 67.8 |
| MS.gene072546.t1 | MTR_7g109340 | 48.485 | 66 | 30 | 2 | 17 | 82 | 27 | 88 | 4.20e-13 | 65.9 |
| MS.gene072546.t1 | MTR_8g081620 | 46.970 | 66 | 33 | 1 | 17 | 82 | 61 | 124 | 8.08e-13 | 63.5 |
| MS.gene072546.t1 | MTR_4g023470 | 48.485 | 66 | 30 | 1 | 17 | 82 | 87 | 148 | 1.33e-12 | 64.7 |
| MS.gene072546.t1 | MTR_6g026940 | 43.284 | 67 | 37 | 1 | 17 | 82 | 3 | 69 | 1.40e-12 | 62.8 |
| MS.gene072546.t1 | MTR_5g065860 | 43.836 | 73 | 37 | 1 | 12 | 84 | 44 | 112 | 1.67e-12 | 61.6 |
| MS.gene072546.t1 | MTR_3g027580 | 46.970 | 66 | 31 | 1 | 17 | 82 | 90 | 151 | 1.84e-12 | 64.3 |
| MS.gene072546.t1 | MTR_6g027030 | 43.284 | 67 | 37 | 1 | 17 | 82 | 3 | 69 | 2.00e-12 | 63.2 |
| MS.gene072546.t1 | MTR_5g035770 | 37.975 | 79 | 45 | 1 | 18 | 96 | 27 | 101 | 4.19e-12 | 63.2 |
| MS.gene072546.t1 | MTR_5g065160 | 43.939 | 66 | 33 | 1 | 17 | 82 | 84 | 145 | 4.19e-12 | 63.5 |
| MS.gene072546.t1 | MTR_5g065160 | 43.939 | 66 | 33 | 1 | 17 | 82 | 83 | 144 | 4.35e-12 | 63.2 |
| MS.gene072546.t1 | MTR_5g065160 | 43.939 | 66 | 33 | 1 | 17 | 82 | 77 | 138 | 5.23e-12 | 63.2 |
| MS.gene072546.t1 | MTR_5g065160 | 43.939 | 66 | 33 | 1 | 17 | 82 | 84 | 145 | 5.79e-12 | 63.2 |
| MS.gene072546.t1 | MTR_8g006430 | 39.080 | 87 | 45 | 1 | 5 | 91 | 3 | 81 | 1.20e-11 | 62.0 |
| MS.gene072546.t1 | MTR_2g104030 | 46.377 | 69 | 32 | 2 | 14 | 82 | 68 | 131 | 1.52e-11 | 61.6 |
| MS.gene072546.t1 | MTR_4g076240 | 41.463 | 82 | 32 | 1 | 18 | 83 | 956 | 1037 | 5.82e-11 | 60.1 |
| MS.gene072546.t1 | MTR_8g037810 | 34.921 | 126 | 63 | 4 | 13 | 123 | 3 | 124 | 6.12e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072546.t1 | AT1G56300 | 71.069 | 159 | 43 | 2 | 1 | 159 | 1 | 156 | 2.39e-71 | 212 |
| MS.gene072546.t1 | AT1G56300 | 77.679 | 112 | 22 | 2 | 1 | 112 | 1 | 109 | 1.44e-52 | 163 |
| MS.gene072546.t1 | AT1G71000 | 51.748 | 143 | 53 | 4 | 10 | 139 | 3 | 142 | 9.09e-40 | 132 |
| MS.gene072546.t1 | AT1G71000 | 44.025 | 159 | 80 | 4 | 10 | 163 | 3 | 157 | 8.50e-38 | 127 |
| MS.gene072546.t1 | AT3G14200 | 47.967 | 123 | 58 | 3 | 18 | 135 | 14 | 135 | 1.19e-32 | 116 |
| MS.gene072546.t1 | AT1G72416 | 40.816 | 98 | 56 | 2 | 18 | 115 | 7 | 102 | 1.57e-22 | 89.0 |
| MS.gene072546.t1 | AT1G72416 | 40.816 | 98 | 56 | 2 | 18 | 115 | 7 | 102 | 1.74e-22 | 89.0 |
| MS.gene072546.t1 | AT1G72416 | 40.816 | 98 | 56 | 2 | 18 | 115 | 7 | 102 | 3.78e-22 | 88.6 |
| MS.gene072546.t1 | AT1G72416 | 42.222 | 90 | 50 | 2 | 18 | 107 | 7 | 94 | 1.29e-21 | 86.7 |
| MS.gene072546.t1 | AT5G25530 | 37.594 | 133 | 67 | 3 | 17 | 149 | 5 | 121 | 2.32e-19 | 83.6 |
| MS.gene072546.t1 | AT1G10350 | 50.000 | 66 | 30 | 1 | 17 | 82 | 5 | 67 | 1.94e-17 | 78.2 |
| MS.gene072546.t1 | AT3G08910 | 53.030 | 66 | 28 | 1 | 17 | 82 | 5 | 67 | 2.77e-17 | 77.4 |
| MS.gene072546.t1 | AT4G28480 | 53.030 | 66 | 28 | 1 | 17 | 82 | 5 | 67 | 2.99e-17 | 77.0 |
| MS.gene072546.t1 | AT1G59725 | 52.239 | 67 | 28 | 2 | 17 | 82 | 5 | 68 | 4.74e-17 | 77.0 |
| MS.gene072546.t1 | AT4G28480 | 53.030 | 66 | 28 | 1 | 17 | 82 | 5 | 67 | 4.83e-17 | 77.0 |
| MS.gene072546.t1 | AT2G20560 | 53.030 | 66 | 28 | 1 | 17 | 82 | 5 | 67 | 1.08e-16 | 76.3 |
| MS.gene072546.t1 | AT5G25530 | 35.461 | 141 | 67 | 4 | 17 | 149 | 5 | 129 | 1.28e-16 | 75.9 |
| MS.gene072546.t1 | AT5G01390 | 50.000 | 66 | 30 | 1 | 17 | 82 | 5 | 67 | 2.62e-16 | 73.9 |
| MS.gene072546.t1 | AT5G01390 | 50.000 | 66 | 30 | 1 | 17 | 82 | 5 | 67 | 3.50e-16 | 73.9 |
| MS.gene072546.t1 | AT5G01390 | 50.000 | 66 | 30 | 1 | 17 | 82 | 5 | 67 | 3.80e-16 | 73.2 |
| MS.gene072546.t1 | AT5G01390 | 50.000 | 66 | 30 | 1 | 17 | 82 | 5 | 67 | 6.99e-16 | 73.9 |
| MS.gene072546.t1 | AT3G47940 | 49.254 | 67 | 30 | 2 | 17 | 82 | 5 | 68 | 3.33e-15 | 72.0 |
| MS.gene072546.t1 | AT2G33735 | 38.298 | 94 | 54 | 1 | 17 | 110 | 23 | 112 | 1.27e-14 | 66.6 |
| MS.gene072546.t1 | AT2G33735 | 38.298 | 94 | 54 | 1 | 17 | 110 | 23 | 112 | 1.27e-14 | 66.6 |
| MS.gene072546.t1 | AT2G41000 | 43.478 | 69 | 38 | 1 | 17 | 84 | 4 | 72 | 1.53e-14 | 68.2 |
| MS.gene072546.t1 | AT5G16650 | 43.750 | 80 | 40 | 2 | 9 | 87 | 4 | 79 | 1.67e-14 | 66.6 |
| MS.gene072546.t1 | AT2G41000 | 43.478 | 69 | 38 | 1 | 17 | 84 | 4 | 72 | 2.74e-14 | 67.8 |
| MS.gene072546.t1 | AT5G03160 | 45.205 | 73 | 37 | 1 | 12 | 84 | 366 | 435 | 4.00e-14 | 69.3 |
| MS.gene072546.t1 | AT3G12170 | 44.000 | 75 | 38 | 1 | 8 | 82 | 3 | 73 | 5.24e-14 | 67.8 |
| MS.gene072546.t1 | AT1G24120 | 37.975 | 79 | 45 | 1 | 18 | 96 | 22 | 96 | 5.43e-14 | 68.9 |
| MS.gene072546.t1 | AT2G22360 | 48.485 | 66 | 29 | 2 | 17 | 82 | 87 | 147 | 5.52e-14 | 68.9 |
| MS.gene072546.t1 | AT5G16650 | 43.750 | 80 | 40 | 2 | 9 | 87 | 4 | 79 | 5.54e-14 | 66.2 |
| MS.gene072546.t1 | AT5G06910 | 45.205 | 73 | 36 | 1 | 10 | 82 | 23 | 91 | 7.94e-14 | 67.8 |
| MS.gene072546.t1 | AT1G74250 | 41.026 | 78 | 45 | 1 | 7 | 83 | 2 | 79 | 8.19e-14 | 68.6 |
| MS.gene072546.t1 | AT3G12170 | 44.000 | 75 | 38 | 1 | 8 | 82 | 39 | 109 | 2.17e-13 | 66.6 |
| MS.gene072546.t1 | AT1G68370 | 42.466 | 73 | 38 | 1 | 18 | 90 | 19 | 87 | 2.54e-13 | 67.0 |
| MS.gene072546.t1 | AT4G39960 | 48.485 | 66 | 29 | 2 | 17 | 82 | 86 | 146 | 9.51e-13 | 65.5 |
| MS.gene072546.t1 | AT4G39960 | 48.485 | 66 | 29 | 2 | 17 | 82 | 86 | 146 | 9.51e-13 | 65.5 |
| MS.gene072546.t1 | AT3G62600 | 48.485 | 66 | 30 | 1 | 17 | 82 | 27 | 88 | 1.38e-12 | 64.7 |
| MS.gene072546.t1 | AT5G12430 | 46.154 | 91 | 27 | 4 | 18 | 92 | 1026 | 1110 | 3.42e-12 | 63.9 |
| MS.gene072546.t1 | AT1G59980 | 42.424 | 66 | 34 | 1 | 18 | 83 | 25 | 86 | 5.91e-12 | 62.8 |
| MS.gene072546.t1 | AT1G59980 | 42.424 | 66 | 34 | 1 | 18 | 83 | 25 | 86 | 6.24e-12 | 62.8 |
| MS.gene072546.t1 | AT5G48030 | 38.667 | 75 | 42 | 1 | 17 | 91 | 95 | 165 | 1.05e-11 | 62.4 |
| MS.gene072546.t1 | AT1G80030 | 42.424 | 66 | 33 | 2 | 17 | 82 | 76 | 136 | 2.84e-11 | 61.2 |
| MS.gene072546.t1 | AT1G80030 | 42.424 | 66 | 33 | 2 | 17 | 82 | 76 | 136 | 3.27e-11 | 60.8 |
| MS.gene072546.t1 | AT1G80030 | 42.424 | 66 | 33 | 2 | 17 | 82 | 76 | 136 | 3.27e-11 | 60.8 |
| MS.gene072546.t1 | AT1G80030 | 42.424 | 66 | 33 | 2 | 17 | 82 | 76 | 136 | 3.27e-11 | 60.8 |
| MS.gene072546.t1 | AT1G28210 | 38.272 | 81 | 44 | 2 | 6 | 86 | 40 | 114 | 3.83e-11 | 60.5 |
| MS.gene072546.t1 | AT1G28210 | 38.272 | 81 | 44 | 2 | 6 | 86 | 40 | 114 | 4.13e-11 | 60.5 |
| MS.gene072546.t1 | AT2G21510 | 41.429 | 70 | 37 | 1 | 13 | 82 | 3 | 68 | 4.64e-11 | 60.1 |
| MS.gene072546.t1 | AT2G21510 | 41.429 | 70 | 37 | 1 | 13 | 82 | 3 | 68 | 4.64e-11 | 60.1 |
| MS.gene072546.t1 | AT1G28210 | 38.272 | 81 | 44 | 2 | 6 | 86 | 40 | 114 | 4.95e-11 | 60.5 |
| MS.gene072546.t1 | AT2G21510 | 41.429 | 70 | 37 | 1 | 13 | 82 | 3 | 68 | 5.05e-11 | 60.1 |
| MS.gene072546.t1 | AT2G21510 | 41.429 | 70 | 37 | 1 | 13 | 82 | 3 | 68 | 5.05e-11 | 60.1 |
| MS.gene072546.t1 | AT2G21510 | 41.429 | 70 | 37 | 1 | 13 | 82 | 3 | 68 | 5.52e-11 | 60.1 |
| MS.gene072546.t1 | AT4G39150 | 42.857 | 70 | 36 | 1 | 13 | 82 | 3 | 68 | 7.89e-11 | 59.7 |
| MS.gene072546.t1 | AT4G39150 | 42.857 | 70 | 36 | 1 | 13 | 82 | 3 | 68 | 7.89e-11 | 59.7 |
| MS.gene072546.t1 | AT4G39150 | 42.857 | 70 | 36 | 1 | 13 | 82 | 3 | 68 | 7.89e-11 | 59.7 |
Find 36 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGCTATTACTCTGTTCT+TGG | 0.198681 | 7.3:-4296098 | MS.gene072546:CDS |
| GGATTTCGAGCGAATTTATC+AGG | 0.209743 | 7.3:+4295921 | None:intergenic |
| CAAATTCAAGAAGCATATTC+AGG | 0.256213 | 7.3:-4295864 | MS.gene072546:intron |
| TTGGCTTCTCCGGCAGTTGT+AGG | 0.330200 | 7.3:+4295900 | None:intergenic |
| TCTTCCCAGCCGTCTGATCT+TGG | 0.344100 | 7.3:+4295019 | None:intergenic |
| GCGGCAATGATTGCTGCGCT+TGG | 0.404589 | 7.3:+4294963 | None:intergenic |
| AATTTGCTGAAACCGTCGTT+TGG | 0.414220 | 7.3:+4295881 | None:intergenic |
| GTTGAGATGGTAGGTGGAGA+TGG | 0.451612 | 7.3:-4295060 | MS.gene072546:CDS |
| ACAAAGGATGTTTGTTGAGA+TGG | 0.470153 | 7.3:-4295073 | MS.gene072546:CDS |
| AAACCGTCGTTTGGCTTCTC+CGG | 0.481969 | 7.3:+4295890 | None:intergenic |
| TTGAACCAAGATCAGACGGC+TGG | 0.499992 | 7.3:-4295024 | MS.gene072546:CDS |
| AAAAGATCAATGTACGATGC+TGG | 0.500396 | 7.3:-4295731 | MS.gene072546:CDS |
| TGCTTACCGCAAACTCGCTA+TGG | 0.507423 | 7.3:-4296039 | MS.gene072546:intron |
| GATCAGACGGCTGGGAAGAG+AGG | 0.537894 | 7.3:-4295015 | MS.gene072546:CDS |
| GTATTACCATAGCGAGTTTG+CGG | 0.546432 | 7.3:+4296033 | None:intergenic |
| AGTGCGAATATCAGAGGAGG+AGG | 0.553290 | 7.3:+4296061 | None:intergenic |
| ACTTGGTCTTCTTCTTCAAG+AGG | 0.556126 | 7.3:+4295698 | None:intergenic |
| GCTCGAAATCCTACAACTGC+CGG | 0.560164 | 7.3:-4295909 | MS.gene072546:CDS |
| GGGAAGAGAGGACGCTCAAG+TGG | 0.569154 | 7.3:-4295003 | MS.gene072546:CDS |
| TGATTTGAACCAAGATCAGA+CGG | 0.588129 | 7.3:-4295028 | MS.gene072546:CDS |
| AGAAGATCTACTACCACCGT+TGG | 0.599024 | 7.3:+4296118 | None:intergenic |
| GATGAATAATGTCAAAGATG+AGG | 0.606591 | 7.3:-4295246 | MS.gene072546:intron |
| GATTTCGAGCGAATTTATCA+GGG | 0.606606 | 7.3:+4295922 | None:intergenic |
| TGAACCAAGATCAGACGGCT+GGG | 0.607458 | 7.3:-4295023 | MS.gene072546:CDS |
| CAAGAAGGAGGAGGATCCAA+CGG | 0.620400 | 7.3:-4296134 | MS.gene072546:CDS |
| GGACGCTCAAGTGGATCAAG+AGG | 0.624597 | 7.3:-4294994 | MS.gene072546:CDS |
| ATGTTTGTTGAGATGGTAGG+TGG | 0.628226 | 7.3:-4295066 | MS.gene072546:CDS |
| GTAAGCAGTGCGAATATCAG+AGG | 0.644250 | 7.3:+4296055 | None:intergenic |
| CCAACGGTGATGGATCAAGA+AGG | 0.647408 | 7.3:-4296149 | None:intergenic |
| AGGATGTTTGTTGAGATGGT+AGG | 0.652987 | 7.3:-4295069 | MS.gene072546:CDS |
| AGCAGTGCGAATATCAGAGG+AGG | 0.654808 | 7.3:+4296058 | None:intergenic |
| GTGATGGATCAAGAAGGAGG+AGG | 0.667540 | 7.3:-4296143 | MS.gene072546:CDS |
| ACGGTGATGGATCAAGAAGG+AGG | 0.684880 | 7.3:-4296146 | None:intergenic |
| ACAGTTTGGAGGATCTACAA+AGG | 0.691000 | 7.3:-4295089 | MS.gene072546:CDS |
| CTGCCGGAGAAGCCAAACGA+CGG | 0.702205 | 7.3:-4295893 | MS.gene072546:CDS |
| GAAGGAGGAGGATCCAACGG+TGG | 0.737111 | 7.3:-4296131 | MS.gene072546:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAATAAAAATTAAAAA+AGG | + | chr7.3:4295589-4295608 | None:intergenic | 0.0% |
| !!! | AAATTCAAATTTTCTATAGA+TGG | - | chr7.3:4295267-4295286 | MS.gene072546:CDS | 15.0% |
| !!! | TCATTTTTTTTTACCAAAAA+AGG | + | chr7.3:4295904-4295923 | None:intergenic | 15.0% |
| !!! | TTTTTGGTAAAAAAAAATGA+AGG | - | chr7.3:4295904-4295923 | MS.gene072546:CDS | 15.0% |
| !! | AATATAAATGAGTAAAACGA+CGG | + | chr7.3:4295094-4295113 | None:intergenic | 20.0% |
| !! | ATATGAGATTGATTATTGAT+TGG | - | chr7.3:4295306-4295325 | MS.gene072546:intron | 20.0% |
| !!! | TGGATTCTAATTCTAATTTT+AGG | - | chr7.3:4295772-4295791 | MS.gene072546:intron | 20.0% |
| ! | AAAAATATCTTGTGCATGTT+TGG | - | chr7.3:4295621-4295640 | MS.gene072546:intron | 25.0% |
| ! | ATTAAAAAAGGCAAAGCAAA+TGG | + | chr7.3:4295577-4295596 | None:intergenic | 25.0% |
| ! | CAAAATTTGTGTTATAATGC+AGG | - | chr7.3:4295797-4295816 | MS.gene072546:intron | 25.0% |
| ! | TTAAAAAAGGCAAAGCAAAT+GGG | + | chr7.3:4295576-4295595 | None:intergenic | 25.0% |
| ! | TTGTTGAATTTGAAAAGAGA+TGG | - | chr7.3:4295153-4295172 | MS.gene072546:intron | 25.0% |
| !! | TTCTATAGATGGTAATGAAT+TGG | - | chr7.3:4295278-4295297 | MS.gene072546:CDS | 25.0% |
| !!! | GTTCTAATTGTTTCCTTTTT+TGG | - | chr7.3:4295888-4295907 | MS.gene072546:CDS | 25.0% |
| !!! | TGGTATTTTCTGGTTATTTA+GGG | - | chr7.3:4295986-4296005 | MS.gene072546:intron | 25.0% |
| !!! | TTGATTGGTTTTAATGTTGT+TGG | - | chr7.3:4295321-4295340 | MS.gene072546:intron | 25.0% |
| !!! | TTGGTATTTTCTGGTTATTT+AGG | - | chr7.3:4295985-4296004 | MS.gene072546:intron | 25.0% |
| AAGAAGAATTGTTACGAACT+TGG | + | chr7.3:4295422-4295441 | None:intergenic | 30.0% | |
| ACAAGACGAGAAAAACAATA+GGG | + | chr7.3:4295533-4295552 | None:intergenic | 30.0% | |
| AGTTAGGTGCATTTGAATAT+TGG | - | chr7.3:4295752-4295771 | MS.gene072546:intron | 30.0% | |
| CAAAGATGAGGTATACTATT+GGG | - | chr7.3:4295866-4295885 | MS.gene072546:CDS | 30.0% | |
| GATGAATAATGTCAAAGATG+AGG | - | chr7.3:4295854-4295873 | MS.gene072546:intron | 30.0% | |
| TCAAAGATGAGGTATACTAT+TGG | - | chr7.3:4295865-4295884 | MS.gene072546:CDS | 30.0% | |
| ! | AAACACGTGATTTTGTTGAA+AGG | - | chr7.3:4295653-4295672 | MS.gene072546:intron | 30.0% |
| ! | CAAATTCAAGAAGCATATTC+AGG | - | chr7.3:4295236-4295255 | MS.gene072546:intron | 30.0% |
| !! | ATGTATTGTTGATGATGTGA+TGG | - | chr7.3:4295956-4295975 | MS.gene072546:intron | 30.0% |
| !! | TGTATTGTTGATGATGTGAT+GGG | - | chr7.3:4295957-4295976 | MS.gene072546:intron | 30.0% |
| !!! | GGTATTTTCTGGTTATTTAG+GGG | - | chr7.3:4295987-4296006 | MS.gene072546:intron | 30.0% |
| !!! | GTATTTTCTGGTTATTTAGG+GGG | - | chr7.3:4295988-4296007 | MS.gene072546:intron | 30.0% |
| !!! | GTTTTACCTCGTTTTGTTTA+CGG | + | chr7.3:4295486-4295505 | None:intergenic | 30.0% |
| AAAAGATCAATGTACGATGC+TGG | - | chr7.3:4295369-4295388 | MS.gene072546:intron | 35.0% | |
| ACAAAATCACGTGTTTACAG+TGG | + | chr7.3:4295649-4295668 | None:intergenic | 35.0% | |
| ATGGGAATCATGTATGTTAC+CGG | + | chr7.3:4295558-4295577 | None:intergenic | 35.0% | |
| CACAAGACGAGAAAAACAAT+AGG | + | chr7.3:4295534-4295553 | None:intergenic | 35.0% | |
| GATTTCGAGCGAATTTATCA+GGG | + | chr7.3:4295181-4295200 | None:intergenic | 35.0% | |
| TGATTTGAACCAAGATCAGA+CGG | - | chr7.3:4296072-4296091 | MS.gene072546:CDS | 35.0% | |
| ! | ACAAAGGATGTTTGTTGAGA+TGG | - | chr7.3:4296027-4296046 | MS.gene072546:intron | 35.0% |
| ! | ATTTTGCCGTAAACAAAACG+AGG | - | chr7.3:4295477-4295496 | MS.gene072546:intron | 35.0% |
| !! | GTATTGTTGATGATGTGATG+GGG | - | chr7.3:4295958-4295977 | MS.gene072546:intron | 35.0% |
| !! | TCTTGCTATTACTCTGTTCT+TGG | - | chr7.3:4295002-4295021 | MS.gene072546:CDS | 35.0% |
| !!! | TGGGGTATTTTGGTATTTTC+TGG | - | chr7.3:4295976-4295995 | MS.gene072546:intron | 35.0% |
| ACAGTTTGGAGGATCTACAA+AGG | - | chr7.3:4296011-4296030 | MS.gene072546:intron | 40.0% | |
| AGAAAAACAATAGGGTCGTC+TGG | + | chr7.3:4295525-4295544 | None:intergenic | 40.0% | |
| GGATTTCGAGCGAATTTATC+AGG | + | chr7.3:4295182-4295201 | None:intergenic | 40.0% | |
| GTATTACCATAGCGAGTTTG+CGG | + | chr7.3:4295070-4295089 | None:intergenic | 40.0% | |
| ! | ACTTGGTCTTCTTCTTCAAG+AGG | + | chr7.3:4295405-4295424 | None:intergenic | 40.0% |
| ! | AGGATGTTTGTTGAGATGGT+AGG | - | chr7.3:4296031-4296050 | MS.gene072546:intron | 40.0% |
| ! | ATGTTTGTTGAGATGGTAGG+TGG | - | chr7.3:4296034-4296053 | MS.gene072546:intron | 40.0% |
| ! | TGTTTTTCTCGTCTTGTGTC+CGG | - | chr7.3:4295536-4295555 | MS.gene072546:intron | 40.0% |
| !! | AATTTGCTGAAACCGTCGTT+TGG | + | chr7.3:4295222-4295241 | None:intergenic | 40.0% |
| !! | GATGATGTGATGGGGTATTT+TGG | - | chr7.3:4295966-4295985 | MS.gene072546:intron | 40.0% |
| !!! | GAGGTAAAACTGTGTCGTTT+TGG | - | chr7.3:4295496-4295515 | MS.gene072546:intron | 40.0% |
| AGAAGATCTACTACCACCGT+TGG | + | chr7.3:4294985-4295004 | None:intergenic | 45.0% | |
| CTTGTAGTGCAGCTCAAGTT+AGG | - | chr7.3:4295736-4295755 | MS.gene072546:CDS | 45.0% | |
| GGTTATTTAGGGGGACAGTT+TGG | - | chr7.3:4295997-4296016 | MS.gene072546:intron | 45.0% | |
| GTAAGCAGTGCGAATATCAG+AGG | + | chr7.3:4295048-4295067 | None:intergenic | 45.0% | |
| TATTTAGGGGGACAGTTTGG+AGG | - | chr7.3:4296000-4296019 | MS.gene072546:intron | 45.0% | |
| TCGTTTCAGTTGCAGAGCAT+GGG | - | chr7.3:4295443-4295462 | MS.gene072546:intron | 45.0% | |
| TTCGTTTCAGTTGCAGAGCA+TGG | - | chr7.3:4295442-4295461 | MS.gene072546:intron | 45.0% | |
| AGCAGTGCGAATATCAGAGG+AGG | + | chr7.3:4295045-4295064 | None:intergenic | 50.0% | |
| AGTGCGAATATCAGAGGAGG+AGG | + | chr7.3:4295042-4295061 | None:intergenic | 50.0% | |
| CAAGAAGGAGGAGGATCCAA+CGG | - | chr7.3:4294966-4294985 | MS.gene072546:CDS | 50.0% | |
| CGTTTCAGTTGCAGAGCATG+GGG | - | chr7.3:4295444-4295463 | MS.gene072546:intron | 50.0% | |
| GCTCGAAATCCTACAACTGC+CGG | - | chr7.3:4295191-4295210 | MS.gene072546:intron | 50.0% | |
| GTTGAGATGGTAGGTGGAGA+TGG | - | chr7.3:4296040-4296059 | MS.gene072546:CDS | 50.0% | |
| TGAACCAAGATCAGACGGCT+GGG | - | chr7.3:4296077-4296096 | MS.gene072546:CDS | 50.0% | |
| TGCTTACCGCAAACTCGCTA+TGG | - | chr7.3:4295061-4295080 | MS.gene072546:CDS | 50.0% | |
| TTGAACCAAGATCAGACGGC+TGG | - | chr7.3:4296076-4296095 | MS.gene072546:CDS | 50.0% | |
| ! | AAACCGTCGTTTGGCTTCTC+CGG | + | chr7.3:4295213-4295232 | None:intergenic | 50.0% |
| GGACGCTCAAGTGGATCAAG+AGG | - | chr7.3:4296106-4296125 | MS.gene072546:CDS | 55.0% | |
| TCTTCCCAGCCGTCTGATCT+TGG | + | chr7.3:4296084-4296103 | None:intergenic | 55.0% | |
| TTGGCTTCTCCGGCAGTTGT+AGG | + | chr7.3:4295203-4295222 | None:intergenic | 55.0% | |
| CTGCCGGAGAAGCCAAACGA+CGG | - | chr7.3:4295207-4295226 | MS.gene072546:intron | 60.0% | |
| GAAGGAGGAGGATCCAACGG+TGG | - | chr7.3:4294969-4294988 | MS.gene072546:CDS | 60.0% | |
| GATCAGACGGCTGGGAAGAG+AGG | - | chr7.3:4296085-4296104 | MS.gene072546:CDS | 60.0% | |
| GCGGCAATGATTGCTGCGCT+TGG | + | chr7.3:4296140-4296159 | None:intergenic | 60.0% | |
| GGGAAGAGAGGACGCTCAAG+TGG | - | chr7.3:4296097-4296116 | MS.gene072546:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 4294960 | 4296162 | 4294960 | ID=MS.gene072546 |
| chr7.3 | mRNA | 4294960 | 4296162 | 4294960 | ID=MS.gene072546.t1;Parent=MS.gene072546 |
| chr7.3 | exon | 4296040 | 4296162 | 4296040 | ID=MS.gene072546.t1.exon1;Parent=MS.gene072546.t1 |
| chr7.3 | CDS | 4296040 | 4296162 | 4296040 | ID=cds.MS.gene072546.t1;Parent=MS.gene072546.t1 |
| chr7.3 | exon | 4295865 | 4295952 | 4295865 | ID=MS.gene072546.t1.exon2;Parent=MS.gene072546.t1 |
| chr7.3 | CDS | 4295865 | 4295952 | 4295865 | ID=cds.MS.gene072546.t1;Parent=MS.gene072546.t1 |
| chr7.3 | exon | 4295700 | 4295770 | 4295700 | ID=MS.gene072546.t1.exon3;Parent=MS.gene072546.t1 |
| chr7.3 | CDS | 4295700 | 4295770 | 4295700 | ID=cds.MS.gene072546.t1;Parent=MS.gene072546.t1 |
| chr7.3 | exon | 4295247 | 4295303 | 4295247 | ID=MS.gene072546.t1.exon4;Parent=MS.gene072546.t1 |
| chr7.3 | CDS | 4295247 | 4295303 | 4295247 | ID=cds.MS.gene072546.t1;Parent=MS.gene072546.t1 |
| chr7.3 | exon | 4294960 | 4295115 | 4294960 | ID=MS.gene072546.t1.exon5;Parent=MS.gene072546.t1 |
| chr7.3 | CDS | 4294960 | 4295115 | 4294960 | ID=cds.MS.gene072546.t1;Parent=MS.gene072546.t1 |
| Gene Sequence |
| Protein sequence |
