AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene038416

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038416.t1 MTR_5g092700 100.000 153 0 0 1 153 1 153 6.59e-108 304
MS.gene038416.t1 MTR_4g073580 100.000 153 0 0 1 153 1 153 6.59e-108 304
MS.gene038416.t1 MTR_4g073580 83.607 183 0 1 1 153 1 183 1.42e-101 289
MS.gene038416.t1 MTR_7g116360 80.263 152 30 0 1 152 1 152 1.41e-83 245
MS.gene038416.t1 MTR_7g116360 80.263 152 30 0 1 152 77 228 1.41e-83 245
MS.gene038416.t1 MTR_1g066390 80.263 152 30 0 1 152 1 152 2.75e-83 244
MS.gene038416.t1 MTR_1g066390 80.263 152 30 0 1 152 77 228 2.75e-83 244
MS.gene038416.t1 MTR_8g018230 80.263 152 30 0 1 152 1 152 5.16e-83 245
MS.gene038416.t1 MTR_8g018230 80.263 152 30 0 1 152 77 228 5.16e-83 245
MS.gene038416.t1 MTR_8g018230 66.447 152 16 1 1 152 153 269 5.12e-57 179
MS.gene038416.t1 MTR_7g116360 80.263 152 30 0 1 152 49 200 5.60e-83 245
MS.gene038416.t1 MTR_7g116360 80.263 152 30 0 1 152 125 276 5.60e-83 245
MS.gene038416.t1 MTR_4g081010 80.263 152 30 0 1 152 1 152 5.72e-83 245
MS.gene038416.t1 MTR_4g081010 80.263 152 30 0 1 152 77 228 5.72e-83 245
MS.gene038416.t1 MTR_4g081010 92.391 92 7 0 1 92 153 244 2.01e-52 167
MS.gene038416.t1 MTR_4g080920 79.605 152 31 0 1 152 1 152 1.01e-82 243
MS.gene038416.t1 MTR_4g080920 75.000 152 38 0 1 152 77 228 9.35e-74 220
MS.gene038416.t1 MTR_8g081020 80.392 153 30 0 1 153 229 381 1.54e-82 248
MS.gene038416.t1 MTR_8g081020 80.263 152 30 0 1 152 1 152 1.53e-81 245
MS.gene038416.t1 MTR_8g081020 80.263 152 30 0 1 152 77 228 1.53e-81 245
MS.gene038416.t1 MTR_8g081020 80.263 152 30 0 1 152 153 304 1.53e-81 245
MS.gene038416.t1 MTR_6g061930 80.263 152 30 0 1 152 1 152 1.72e-82 244
MS.gene038416.t1 MTR_6g061930 75.000 152 23 1 1 152 77 213 3.33e-71 216
MS.gene038416.t1 MTR_6g061930 69.079 152 32 1 1 152 153 289 5.47e-66 202
MS.gene038416.t1 MTR_4g081010 80.263 152 30 0 1 152 1 152 1.72e-82 245
MS.gene038416.t1 MTR_4g081010 80.263 152 30 0 1 152 77 228 1.72e-82 245
MS.gene038416.t1 MTR_4g081010 80.263 152 30 0 1 152 153 304 1.72e-82 245
MS.gene038416.t1 MTR_4g091580 80.263 152 30 0 1 152 153 304 1.24e-81 245
MS.gene038416.t1 MTR_4g091580 80.263 152 30 0 1 152 1 152 1.53e-81 245
MS.gene038416.t1 MTR_4g091580 80.263 152 30 0 1 152 77 228 1.53e-81 245
MS.gene038416.t1 MTR_4g091580 79.605 152 31 0 1 152 229 380 4.49e-81 244
MS.gene038416.t1 MTR_4g080797 80.263 152 30 0 1 152 1 152 1.65e-81 245
MS.gene038416.t1 MTR_4g080797 80.263 152 30 0 1 152 77 228 1.65e-81 245
MS.gene038416.t1 MTR_4g080797 80.263 152 30 0 1 152 153 304 1.65e-81 245
MS.gene038416.t1 MTR_4g080797 80.263 152 30 0 1 152 229 380 1.65e-81 245
MS.gene038416.t1 MTR_8g018230 80.263 152 30 0 1 152 1 152 1.65e-81 245
MS.gene038416.t1 MTR_8g018230 80.263 152 30 0 1 152 77 228 1.65e-81 245
MS.gene038416.t1 MTR_8g018230 80.263 152 30 0 1 152 153 304 1.65e-81 245
MS.gene038416.t1 MTR_8g018230 80.263 152 30 0 1 152 229 380 1.65e-81 245
MS.gene038416.t1 MTR_4g081010 80.263 152 30 0 1 152 1 152 1.82e-81 245
MS.gene038416.t1 MTR_4g081010 80.263 152 30 0 1 152 77 228 1.82e-81 245
MS.gene038416.t1 MTR_4g081010 80.263 152 30 0 1 152 153 304 1.82e-81 245
MS.gene038416.t1 MTR_4g081010 80.263 152 30 0 1 152 229 380 1.82e-81 245
MS.gene038416.t1 MTR_8g018230 80.263 152 30 0 1 152 1 152 1.18e-80 245
MS.gene038416.t1 MTR_8g018230 80.263 152 30 0 1 152 77 228 1.18e-80 245
MS.gene038416.t1 MTR_8g018230 80.263 152 30 0 1 152 153 304 1.18e-80 245
MS.gene038416.t1 MTR_8g018230 80.263 152 30 0 1 152 229 380 1.18e-80 245
MS.gene038416.t1 MTR_8g018230 80.263 152 30 0 1 152 305 456 1.18e-80 245
MS.gene038416.t1 MTR_8g018230 80.263 152 30 0 1 152 1 152 1.18e-80 245
MS.gene038416.t1 MTR_8g018230 80.263 152 30 0 1 152 77 228 1.18e-80 245
MS.gene038416.t1 MTR_8g018230 80.263 152 30 0 1 152 153 304 1.18e-80 245
MS.gene038416.t1 MTR_8g018230 80.263 152 30 0 1 152 229 380 1.18e-80 245
MS.gene038416.t1 MTR_8g018230 80.263 152 30 0 1 152 305 456 1.18e-80 245
MS.gene038416.t1 MTR_8g018230 80.263 152 30 0 1 152 1 152 8.15e-80 245
MS.gene038416.t1 MTR_8g018230 80.263 152 30 0 1 152 77 228 8.15e-80 245
MS.gene038416.t1 MTR_8g018230 80.263 152 30 0 1 152 153 304 8.15e-80 245
MS.gene038416.t1 MTR_8g018230 80.263 152 30 0 1 152 229 380 8.15e-80 245
MS.gene038416.t1 MTR_8g018230 80.263 152 30 0 1 152 305 456 8.15e-80 245
MS.gene038416.t1 MTR_8g018230 80.263 152 30 0 1 152 381 532 8.15e-80 245
MS.gene038416.t1 MTR_4g091580 80.263 152 30 0 1 152 1 152 8.60e-80 245
MS.gene038416.t1 MTR_4g091580 80.263 152 30 0 1 152 77 228 8.60e-80 245
MS.gene038416.t1 MTR_4g091580 80.263 152 30 0 1 152 153 304 8.60e-80 245
MS.gene038416.t1 MTR_4g091580 80.263 152 30 0 1 152 381 532 8.60e-80 245
MS.gene038416.t1 MTR_4g091580 80.263 152 30 0 1 152 229 380 3.67e-79 243
MS.gene038416.t1 MTR_4g091580 78.947 152 32 0 1 152 305 456 3.58e-78 241
MS.gene038416.t1 MTR_4g081010 80.263 152 30 0 1 152 1 152 8.98e-80 245
MS.gene038416.t1 MTR_4g081010 80.263 152 30 0 1 152 77 228 8.98e-80 245
MS.gene038416.t1 MTR_4g081010 80.263 152 30 0 1 152 153 304 8.98e-80 245
MS.gene038416.t1 MTR_4g081010 80.263 152 30 0 1 152 229 380 8.98e-80 245
MS.gene038416.t1 MTR_4g081010 80.263 152 30 0 1 152 305 456 8.98e-80 245
MS.gene038416.t1 MTR_4g081010 80.263 152 30 0 1 152 381 532 8.98e-80 245
MS.gene038416.t1 MTR_4g088495 80.263 152 30 0 1 152 77 228 2.31e-77 245
MS.gene038416.t1 MTR_4g088495 80.263 152 30 0 1 152 153 304 2.31e-77 245
MS.gene038416.t1 MTR_4g088495 80.263 152 30 0 1 152 229 380 2.31e-77 245
MS.gene038416.t1 MTR_4g088495 80.263 152 30 0 1 152 305 456 2.31e-77 245
MS.gene038416.t1 MTR_4g088495 80.263 152 30 0 1 152 381 532 2.31e-77 245
MS.gene038416.t1 MTR_4g088495 80.263 152 30 0 1 152 457 608 2.31e-77 245
MS.gene038416.t1 MTR_4g088495 80.263 152 30 0 1 152 533 684 2.31e-77 245
MS.gene038416.t1 MTR_4g088495 80.263 152 30 0 1 152 609 760 2.31e-77 245
MS.gene038416.t1 MTR_4g088495 80.263 152 30 0 1 152 685 836 2.31e-77 245
MS.gene038416.t1 MTR_4g088495 79.605 152 31 0 1 152 1 152 3.98e-76 242
MS.gene038416.t1 MTR_4g088485 76.974 152 20 1 1 152 1 137 4.44e-74 221
MS.gene038416.t1 MTR_4g088485 70.395 152 30 1 1 152 77 213 9.45e-69 207
MS.gene038416.t1 MTR_8g479250 72.789 147 29 1 1 147 141 276 2.82e-58 183
MS.gene038416.t1 MTR_8g479250 69.091 110 34 0 43 152 107 216 1.27e-41 140
MS.gene038416.t1 MTR_8g479250 48.026 152 67 4 1 152 1 140 9.81e-29 107
MS.gene038416.t1 MTR_8g479250 76.389 72 6 1 1 72 217 277 2.16e-26 101
MS.gene038416.t1 MTR_3g092130 97.436 78 2 0 1 78 1 78 6.30e-50 157
MS.gene038416.t1 MTR_3g092130 62.162 74 28 0 79 152 3 76 1.49e-26 97.8
MS.gene038416.t1 MTR_7g105080 100.000 76 0 0 1 76 1 76 1.12e-49 155
MS.gene038416.t1 MTR_7g105080 62.162 74 28 0 79 152 3 76 2.20e-26 96.7
MS.gene038416.t1 MTR_3g092130 100.000 76 0 0 1 76 1 76 1.12e-49 155
MS.gene038416.t1 MTR_3g092130 62.162 74 28 0 79 152 3 76 2.20e-26 96.7
MS.gene038416.t1 MTR_1g059690 100.000 76 0 0 1 76 1 76 1.12e-49 155
MS.gene038416.t1 MTR_1g059690 62.162 74 28 0 79 152 3 76 2.20e-26 96.7
MS.gene038416.t1 MTR_8g088060 98.701 77 1 0 1 77 1 77 3.30e-49 155
MS.gene038416.t1 MTR_8g088060 62.162 74 28 0 79 152 3 76 3.96e-26 97.1
MS.gene038416.t1 MTR_5g033960 98.701 77 1 0 1 77 1 77 3.72e-49 155
MS.gene038416.t1 MTR_5g033960 62.162 74 28 0 79 152 3 76 3.87e-26 97.1
MS.gene038416.t1 MTR_1g046640 71.053 76 22 0 1 76 240 315 1.23e-28 107
MS.gene038416.t1 MTR_1g046640 44.595 74 41 0 79 152 242 315 1.07e-13 67.0
MS.gene038416.t1 MTR_5g076810 68.831 77 23 1 1 76 194 270 1.23e-27 103
MS.gene038416.t1 MTR_5g076810 48.000 75 38 1 79 152 196 270 1.50e-14 68.9
MS.gene038416.t1 MTR_5g076660 69.863 73 22 0 1 73 266 338 1.42e-27 105
MS.gene038416.t1 MTR_5g076660 49.275 69 35 0 79 147 268 336 1.58e-13 67.0
MS.gene038416.t1 MTR_5g061310 60.000 75 30 0 1 75 2 76 2.75e-25 92.4
MS.gene038416.t1 MTR_5g061310 41.892 74 43 0 78 151 3 76 8.45e-14 63.2
MS.gene038416.t1 MTR_5g067400 68.421 76 24 0 1 76 241 316 5.97e-25 97.8
MS.gene038416.t1 MTR_5g067400 47.297 74 39 0 79 152 243 316 1.03e-12 64.3
MS.gene038416.t1 MTR_5g076370 64.384 73 26 0 1 73 267 339 1.63e-23 94.4
MS.gene038416.t1 MTR_2g038430 61.333 75 29 0 1 75 268 342 1.85e-22 91.3
MS.gene038416.t1 MTR_5g076505 61.333 75 29 0 1 75 240 314 2.00e-22 90.9
MS.gene038416.t1 MTR_5g076720 65.333 75 26 0 1 75 315 389 2.26e-22 91.7
MS.gene038416.t1 MTR_1g046650 57.895 76 32 0 1 76 171 246 2.95e-22 89.4
MS.gene038416.t1 MTR_1g046650 40.541 74 44 0 79 152 173 246 9.19e-12 61.2
MS.gene038416.t1 MTR_1g046650 57.895 76 32 0 1 76 240 315 5.45e-22 89.7
MS.gene038416.t1 MTR_1g046650 40.541 74 44 0 79 152 242 315 1.18e-11 61.2
MS.gene038416.t1 MTR_2g038420 60.000 75 30 0 1 75 260 334 6.31e-22 89.7
MS.gene038416.t1 MTR_5g076740 59.211 76 30 1 1 75 86 161 7.55e-22 86.3
MS.gene038416.t1 MTR_1g046650 57.895 76 32 0 1 76 240 315 7.59e-22 89.4
MS.gene038416.t1 MTR_1g046650 40.541 74 44 0 79 152 242 315 1.55e-11 61.2
MS.gene038416.t1 MTR_1g046650 57.895 76 32 0 1 76 271 346 1.16e-21 89.4
MS.gene038416.t1 MTR_1g046650 40.541 74 44 0 79 152 273 346 1.83e-11 60.8
MS.gene038416.t1 MTR_7g094390 58.667 75 31 0 1 75 402 476 6.16e-21 88.2
MS.gene038416.t1 MTR_7g094390 43.243 74 42 0 78 151 403 476 7.30e-12 62.4
MS.gene038416.t1 MTR_5g076520 57.333 75 31 1 1 74 244 318 1.79e-19 83.2
MS.gene038416.t1 MTR_7g024290 60.526 76 29 1 1 75 241 316 1.46e-18 80.5
MS.gene038416.t1 MTR_5g061290 53.333 75 35 0 1 75 252 326 9.55e-18 78.6
MS.gene038416.t1 MTR_4g009980 55.224 67 30 0 9 75 4 70 1.48e-17 72.4
MS.gene038416.t1 MTR_4g080783 72.917 48 13 0 44 91 7 54 4.33e-16 69.3
MS.gene038416.t1 MTR_3g091400 31.250 144 96 3 7 147 32 175 4.86e-16 74.3
MS.gene038416.t1 MTR_5g076350 48.684 76 38 1 1 75 8 83 1.59e-15 67.8
MS.gene038416.t1 MTR_5g076780 56.452 62 27 0 13 74 2 63 5.79e-15 65.9
MS.gene038416.t1 MTR_5g076760 58.621 58 24 0 10 67 4 61 6.02e-15 66.2
MS.gene038416.t1 MTR_5g076340 50.649 77 36 2 1 75 9 85 8.59e-15 65.9
MS.gene038416.t1 MTR_7g117395 34.074 135 83 4 1 130 37 170 9.18e-15 70.9
MS.gene038416.t1 MTR_8g027610 34.437 151 87 6 3 145 38 184 9.27e-15 70.9
MS.gene038416.t1 MTR_8g099565 30.882 136 91 3 15 147 40 175 6.07e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038416.t1 AT1G31340 99.342 152 1 0 1 152 1 152 3.98e-106 300
MS.gene038416.t1 AT2G35635 98.684 152 2 0 1 152 1 152 3.98e-105 297
MS.gene038416.t1 AT2G35635 60.526 76 30 0 3 78 79 154 4.12e-25 94.4
MS.gene038416.t1 AT4G05050 80.263 152 30 0 1 152 1 152 1.45e-84 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 1 152 1.45e-84 245
MS.gene038416.t1 AT4G05050 80.263 152 30 0 1 152 1 152 1.47e-83 245
MS.gene038416.t1 AT4G05050 80.263 152 30 0 1 152 77 228 1.47e-83 245
MS.gene038416.t1 AT4G05050 80.263 152 30 0 1 152 1 152 1.47e-83 245
MS.gene038416.t1 AT4G05050 80.263 152 30 0 1 152 77 228 1.47e-83 245
MS.gene038416.t1 AT4G05050 80.263 152 30 0 1 152 1 152 1.47e-83 245
MS.gene038416.t1 AT4G05050 80.263 152 30 0 1 152 77 228 1.47e-83 245
MS.gene038416.t1 AT4G02890 80.263 152 30 0 1 152 1 152 1.47e-83 245
MS.gene038416.t1 AT4G02890 80.263 152 30 0 1 152 77 228 1.47e-83 245
MS.gene038416.t1 AT4G02890 80.263 152 30 0 1 152 1 152 1.47e-83 245
MS.gene038416.t1 AT4G02890 80.263 152 30 0 1 152 77 228 1.47e-83 245
MS.gene038416.t1 AT5G03240 79.739 153 31 0 1 153 153 305 1.09e-82 246
MS.gene038416.t1 AT5G03240 80.263 152 30 0 1 152 1 152 1.60e-82 245
MS.gene038416.t1 AT5G03240 80.263 152 30 0 1 152 77 228 1.60e-82 245
MS.gene038416.t1 AT5G03240 79.739 153 31 0 1 153 153 305 1.09e-82 246
MS.gene038416.t1 AT5G03240 80.263 152 30 0 1 152 1 152 1.60e-82 245
MS.gene038416.t1 AT5G03240 80.263 152 30 0 1 152 77 228 1.60e-82 245
MS.gene038416.t1 AT5G03240 79.739 153 31 0 1 153 153 305 1.09e-82 246
MS.gene038416.t1 AT5G03240 80.263 152 30 0 1 152 1 152 1.60e-82 245
MS.gene038416.t1 AT5G03240 80.263 152 30 0 1 152 77 228 1.60e-82 245
MS.gene038416.t1 AT5G20620 79.739 153 31 0 1 153 153 305 1.09e-82 246
MS.gene038416.t1 AT5G20620 80.263 152 30 0 1 152 1 152 1.60e-82 245
MS.gene038416.t1 AT5G20620 80.263 152 30 0 1 152 77 228 1.60e-82 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 1 152 1.58e-82 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 77 228 1.58e-82 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 153 304 1.58e-82 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 1 152 1.58e-82 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 77 228 1.58e-82 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 153 304 1.58e-82 245
MS.gene038416.t1 AT4G02890 80.263 152 30 0 1 152 1 152 1.58e-82 245
MS.gene038416.t1 AT4G02890 80.263 152 30 0 1 152 77 228 1.58e-82 245
MS.gene038416.t1 AT4G02890 80.263 152 30 0 1 152 153 304 1.58e-82 245
MS.gene038416.t1 AT4G02890 80.263 152 30 0 1 152 1 152 1.58e-82 245
MS.gene038416.t1 AT4G02890 80.263 152 30 0 1 152 77 228 1.58e-82 245
MS.gene038416.t1 AT4G02890 80.263 152 30 0 1 152 153 304 1.58e-82 245
MS.gene038416.t1 AT5G20620 79.739 153 31 0 1 153 229 381 1.18e-81 246
MS.gene038416.t1 AT5G20620 80.263 152 30 0 1 152 1 152 1.72e-81 245
MS.gene038416.t1 AT5G20620 80.263 152 30 0 1 152 77 228 1.72e-81 245
MS.gene038416.t1 AT5G20620 80.263 152 30 0 1 152 153 304 1.72e-81 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 1 152 1.73e-81 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 77 228 1.73e-81 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 153 304 1.73e-81 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 229 380 1.73e-81 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 1 152 1.73e-81 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 77 228 1.73e-81 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 153 304 1.73e-81 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 229 380 1.73e-81 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 1 152 1.73e-81 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 77 228 1.73e-81 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 153 304 1.73e-81 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 229 380 1.73e-81 245
MS.gene038416.t1 AT1G55060 77.778 153 34 0 1 153 77 229 4.71e-81 239
MS.gene038416.t1 AT1G55060 73.684 152 40 0 1 152 1 152 4.70e-77 229
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 1 152 1.24e-80 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 77 228 1.24e-80 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 153 304 1.24e-80 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 229 380 1.24e-80 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 305 456 1.24e-80 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 1 152 1.24e-80 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 77 228 1.24e-80 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 153 304 1.24e-80 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 229 380 1.24e-80 245
MS.gene038416.t1 AT4G05320 80.263 152 30 0 1 152 305 456 1.24e-80 245
MS.gene038416.t1 AT1G65350 79.605 152 30 1 1 152 1 151 1.99e-79 238
MS.gene038416.t1 AT1G65350 78.947 152 31 1 1 152 77 227 2.04e-78 235
MS.gene038416.t1 AT1G65350 70.659 167 35 1 1 153 152 318 1.26e-74 226
MS.gene038416.t1 AT5G37640 76.316 152 36 0 1 152 79 230 1.28e-78 236
MS.gene038416.t1 AT5G37640 73.856 153 39 1 1 152 155 307 3.38e-72 219
MS.gene038416.t1 AT5G37640 69.079 152 47 0 1 152 3 154 8.57e-69 211
MS.gene038416.t1 AT3G09790 70.395 152 45 0 1 152 3 154 2.13e-66 213
MS.gene038416.t1 AT3G09790 64.557 158 49 2 1 151 79 236 5.30e-59 193
MS.gene038416.t1 AT3G09790 58.599 157 58 1 1 150 469 625 5.78e-49 166
MS.gene038416.t1 AT3G09790 54.717 159 65 1 1 152 393 551 6.47e-49 166
MS.gene038416.t1 AT3G09790 59.236 157 57 2 1 150 238 394 9.56e-49 166
MS.gene038416.t1 AT3G09790 54.268 164 63 3 1 152 155 318 1.39e-46 160
MS.gene038416.t1 AT3G09790 57.143 154 60 2 1 152 319 468 1.93e-46 159
MS.gene038416.t1 AT3G09790 70.395 152 45 0 1 152 3 154 2.13e-66 213
MS.gene038416.t1 AT3G09790 64.557 158 49 2 1 151 79 236 5.30e-59 193
MS.gene038416.t1 AT3G09790 58.599 157 58 1 1 150 469 625 5.78e-49 166
MS.gene038416.t1 AT3G09790 54.717 159 65 1 1 152 393 551 6.47e-49 166
MS.gene038416.t1 AT3G09790 59.236 157 57 2 1 150 238 394 9.56e-49 166
MS.gene038416.t1 AT3G09790 54.268 164 63 3 1 152 155 318 1.39e-46 160
MS.gene038416.t1 AT3G09790 57.143 154 60 2 1 152 319 468 1.93e-46 159
MS.gene038416.t1 AT3G52590 100.000 76 0 0 1 76 1 76 1.16e-49 155
MS.gene038416.t1 AT3G52590 62.162 74 28 0 79 152 3 76 2.14e-26 97.1
MS.gene038416.t1 AT2G36170 100.000 76 0 0 1 76 1 76 1.16e-49 155
MS.gene038416.t1 AT2G36170 62.162 74 28 0 79 152 3 76 2.14e-26 97.1
MS.gene038416.t1 AT2G47110 98.701 77 1 0 1 77 1 77 4.63e-49 155
MS.gene038416.t1 AT2G47110 62.162 74 28 0 79 152 3 76 4.56e-26 97.1
MS.gene038416.t1 AT2G47110 98.701 77 1 0 1 77 1 77 4.63e-49 155
MS.gene038416.t1 AT2G47110 62.162 74 28 0 79 152 3 76 4.56e-26 97.1
MS.gene038416.t1 AT1G23410 98.701 77 1 0 1 77 1 77 4.69e-49 155
MS.gene038416.t1 AT1G23410 62.162 74 28 0 79 152 3 76 4.59e-26 97.1
MS.gene038416.t1 AT3G62250 98.701 77 1 0 1 77 1 77 4.89e-49 155
MS.gene038416.t1 AT3G62250 62.162 74 28 0 79 152 3 76 4.71e-26 97.1
MS.gene038416.t1 AT1G11980 79.730 74 15 0 79 152 3 76 2.20e-36 120
MS.gene038416.t1 AT1G11980 53.846 78 36 0 1 78 1 78 6.28e-24 89.0
MS.gene038416.t1 AT1G53930 75.342 73 18 0 1 73 86 158 8.70e-33 114
MS.gene038416.t1 AT1G53930 37.654 162 71 7 8 146 1 155 1.46e-20 82.8
MS.gene038416.t1 AT1G53950 60.000 75 30 0 1 75 69 143 3.64e-25 94.4
MS.gene038416.t1 AT1G53950 36.709 158 59 3 1 151 20 143 5.86e-17 73.2
MS.gene038416.t1 AT2G46500 32.639 144 94 2 7 147 40 183 3.90e-18 80.1
MS.gene038416.t1 AT2G46500 32.639 144 94 2 7 147 40 183 6.69e-18 79.7
MS.gene038416.t1 AT2G46500 32.639 144 94 2 7 147 40 183 6.69e-18 79.7
MS.gene038416.t1 AT5G24240 30.822 146 96 3 7 148 38 182 3.61e-14 68.9
MS.gene038416.t1 AT5G24240 30.822 146 96 3 7 148 38 182 3.61e-14 68.9
MS.gene038416.t1 AT1G53945 46.269 67 36 0 1 67 46 112 9.12e-13 61.6
MS.gene038416.t1 AT4G12570 38.667 75 45 1 1 74 95 169 7.40e-12 62.4
MS.gene038416.t1 AT5G42220 38.889 72 44 0 1 72 24 95 5.02e-11 60.1
MS.gene038416.t1 AT5G42220 38.889 72 44 0 1 72 24 95 5.02e-11 60.1

Find 39 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCGAGGGTGATAGTCTTTC+CGG 0.220251 5.4:+73401051 None:intergenic
ATTAAAGTCAAGACTTTAAC+TGG 0.293945 5.4:-73400658 MS.gene038416:CDS
TCACTTGGTCCTCAGGCTTA+GGG 0.312498 5.4:-73400692 MS.gene038416:CDS
TCACTTGGTGCTTGCATTGA+GGG 0.346912 5.4:-73398837 MS.gene038416:CDS
TTCACTTGGTCCTCAGGCTT+AGG 0.355004 5.4:-73400693 MS.gene038416:CDS
AAAATCAACCTCTGCTGATC+AGG 0.364887 5.4:+73400781 None:intergenic
ACCATCTTCCAACTGCTTAC+CGG 0.377628 5.4:+73400756 None:intergenic
CAACACTTCACTTGGTCCTC+AGG 0.407005 5.4:-73400699 MS.gene038416:CDS
TAAAGTCTTGACTTTAATCA+TGG 0.437158 5.4:+73400663 None:intergenic
TTCACTTGGTGCTTGCATTG+AGG 0.449045 5.4:-73398838 MS.gene038416:CDS
ATCTTTGTGAAGACTTTGAC+CGG 0.455554 5.4:-73401070 MS.gene038416:CDS
GCCGGTAAGCAGTTGGAAGA+TGG 0.470986 5.4:-73400757 MS.gene038416:CDS
GGGTGGTTCTGTGCTTCACT+TGG 0.473264 5.4:-73398852 MS.gene038416:CDS
GTTTCAAACCTCTGCTGCAC+AGG 0.478534 5.4:+73400553 None:intergenic
CACTTGGTGCTTGCATTGAG+GGG 0.485261 5.4:-73398836 MS.gene038416:CDS
TGCTGCAGGCTCATCTATGC+TGG 0.492831 5.4:-73398920 MS.gene038416:intron
CAACGTCAAGGCCAAGATCC+AGG 0.500226 5.4:-73401005 MS.gene038416:intron
GGGTAACCTAACCTGGATCT+TGG 0.508327 5.4:+73400994 None:intergenic
TGCTGATTACAACATACAAA+AGG 0.513784 5.4:-73400725 MS.gene038416:CDS
CACTTGGTCCTCAGGCTTAG+GGG 0.517421 5.4:-73400691 MS.gene038416:CDS
TGATACTATTGATCGTATCA+AGG 0.532559 5.4:-73400605 MS.gene038416:CDS
ATCAACCTCTGCTGATCAGG+AGG 0.535548 5.4:+73400784 None:intergenic
CTTGGCCTTGACGTTGTCGA+TGG 0.546175 5.4:+73401012 None:intergenic
TCAAACCTCTGCTGCACAGG+TGG 0.550195 5.4:+73400556 None:intergenic
GTCGCTGCTCTCAACCTCGA+GGG 0.560617 5.4:+73401036 None:intergenic
GCTAAAGAGTACAACATTGA+GGG 0.566179 5.4:-73398872 MS.gene038416:CDS
AAAGGAATCAACACTTCACT+TGG 0.569456 5.4:-73400707 MS.gene038416:CDS
AGCTAAAGAGTACAACATTG+AGG 0.583787 5.4:-73398873 MS.gene038416:CDS
GTATTCCACCTGTGCAGCAG+AGG 0.583967 5.4:-73400561 MS.gene038416:intron
ATACGATCAATAGTATCAGT+AGG 0.588588 5.4:+73400610 None:intergenic
TTGGTGCTTGCATTGAGGGG+TGG 0.618700 5.4:-73398833 MS.gene038416:CDS
TGTCGCTGCTCTCAACCTCG+AGG 0.630730 5.4:+73401035 None:intergenic
TCAACCTCTGCTGATCAGGA+GGG 0.642222 5.4:+73400785 None:intergenic
TGGTTCCTCCCCTAAGCCTG+AGG 0.652355 5.4:+73400683 None:intergenic
CGACACCATCGACAACGTCA+AGG 0.655064 5.4:-73401017 MS.gene038416:CDS
GTATCCCTCCTGATCAGCAG+AGG 0.665628 5.4:-73400789 MS.gene038416:CDS
TTGGTCCTCAGGCTTAGGGG+AGG 0.681416 5.4:-73400688 MS.gene038416:CDS
AAAGAGTACAACATTGAGGG+TGG 0.697133 5.4:-73398869 MS.gene038416:CDS
CGGAAAGACTATCACCCTCG+AGG 0.726420 5.4:-73401050 MS.gene038416:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTTTTATTTATTTAGTT+AGG - chr5.4:73399505-73399524 MS.gene038416:intron 10.0%
!!! ATTTTTTTTCTTAATTCTTT+TGG - chr5.4:73400929-73400948 MS.gene038416:intron 10.0%
!! ACTTTCTAAATACTTAATTA+GGG - chr5.4:73398943-73398962 MS.gene038416:intron 15.0%
!! TACTTTCTAAATACTTAATT+AGG - chr5.4:73398942-73398961 MS.gene038416:intron 15.0%
!! TTGCTAATTAAAAATTCAAA+TGG + chr5.4:73399452-73399471 None:intergenic 15.0%
!!! TTATTACTTTTTGTTTTGAA+TGG + chr5.4:73400520-73400539 None:intergenic 15.0%
!! ATTTAGAAAGTAGAAAAGAA+AGG + chr5.4:73398934-73398953 None:intergenic 20.0%
!! CAAATAATCTAAAGAATGTT+TGG - chr5.4:73399385-73399404 MS.gene038416:intron 20.0%
!! GATGCAAAACTAAATATAAT+TGG + chr5.4:73400035-73400054 None:intergenic 20.0%
!! TGATCAAAGAATAGTATATA+AGG - chr5.4:73399694-73399713 MS.gene038416:intron 20.0%
!! TTTAGAAAGTAGAAAAGAAA+GGG + chr5.4:73398933-73398952 None:intergenic 20.0%
!! TTTATTTATTTAGTTAGGCT+GGG - chr5.4:73399510-73399529 MS.gene038416:intron 20.0%
!!! ATCATTGATTTTGTTAGTTA+GGG - chr5.4:73398975-73398994 MS.gene038416:intron 20.0%
!!! TAACTATTTTTTTCACTTCA+CGG - chr5.4:73399668-73399687 MS.gene038416:intron 20.0%
!!! TTTTATTTATTTAGTTAGGC+TGG - chr5.4:73399509-73399528 MS.gene038416:intron 20.0%
! AGAGATTTATTTAGCTAGTT+TGG - chr5.4:73400310-73400329 MS.gene038416:intron 25.0%
! AGATAGTAAGAAGAAATACA+TGG - chr5.4:73400383-73400402 MS.gene038416:intron 25.0%
! ATAGTAAGAAGAAATACATG+GGG - chr5.4:73400385-73400404 MS.gene038416:intron 25.0%
! ATTAAAGTCAAGACTTTAAC+TGG - chr5.4:73399244-73399263 MS.gene038416:intron 25.0%
! CAAGTTACTGTTAATATGAT+AGG - chr5.4:73399469-73399488 MS.gene038416:intron 25.0%
! GATAGTAAGAAGAAATACAT+GGG - chr5.4:73400384-73400403 MS.gene038416:intron 25.0%
! GTCATTGATATATCTTATAC+AGG - chr5.4:73400720-73400739 MS.gene038416:CDS 25.0%
! TAAAGTCTTGACTTTAATCA+TGG + chr5.4:73399242-73399261 None:intergenic 25.0%
! TCTCATCTTAACAAAATCAT+AGG + chr5.4:73400366-73400385 None:intergenic 25.0%
! TTAGAAAGTAGAAAAGAAAG+GGG + chr5.4:73398932-73398951 None:intergenic 25.0%
!! AATTTTATACACCATCTTGA+GGG + chr5.4:73399896-73399915 None:intergenic 25.0%
!! TAATTTTATACACCATCTTG+AGG + chr5.4:73399897-73399916 None:intergenic 25.0%
!!! CTTTTATCTGGAATCATAAA+AGG + chr5.4:73400171-73400190 None:intergenic 25.0%
!!! GATCATTGATTTTGTTAGTT+AGG - chr5.4:73398974-73398993 MS.gene038416:intron 25.0%
AAACTAGTTCCTATGAATCT+GGG - chr5.4:73399844-73399863 MS.gene038416:intron 30.0%
AATATTCACCTTTATCCTCA+AGG + chr5.4:73400255-73400274 None:intergenic 30.0%
AGAATAACCATTACAATAGC+TGG + chr5.4:73399985-73400004 None:intergenic 30.0%
AGAATCACAAAATCAGTACT+AGG + chr5.4:73399053-73399072 None:intergenic 30.0%
AGATAAAAGAGAACAGTTGA+TGG - chr5.4:73400182-73400201 MS.gene038416:intron 30.0%
AGCTATTGTAATGGTTATTC+TGG - chr5.4:73399984-73400003 MS.gene038416:intron 30.0%
AGGTAGTATTTATGCAGATT+TGG - chr5.4:73399714-73399733 MS.gene038416:intron 30.0%
ATACGATCAATAGTATCAGT+AGG + chr5.4:73399295-73399314 None:intergenic 30.0%
CAATTAAATTATGCACCTTG+AGG - chr5.4:73400237-73400256 MS.gene038416:intron 30.0%
GAATCACAAAATCAGTACTA+GGG + chr5.4:73399052-73399071 None:intergenic 30.0%
GAGTTGGATTGCATATTTAT+TGG - chr5.4:73400750-73400769 MS.gene038416:CDS 30.0%
TAAACTAGTTCCTATGAATC+TGG - chr5.4:73399843-73399862 MS.gene038416:intron 30.0%
TAGAAAGTAGAAAAGAAAGG+GGG + chr5.4:73398931-73398950 None:intergenic 30.0%
TAGTAAGAAGAAATACATGG+GGG - chr5.4:73400386-73400405 MS.gene038416:intron 30.0%
TGAGGATAAAGGTGAATATT+GGG - chr5.4:73400255-73400274 MS.gene038416:intron 30.0%
TGATACTATTGATCGTATCA+AGG - chr5.4:73399297-73399316 MS.gene038416:intron 30.0%
TTATACAGGTATCATTGAGT+TGG - chr5.4:73400734-73400753 MS.gene038416:CDS 30.0%
TTGAGGATAAAGGTGAATAT+TGG - chr5.4:73400254-73400273 MS.gene038416:intron 30.0%
! ACTAGGGTATTCTTATGTTA+GGG + chr5.4:73399036-73399055 None:intergenic 30.0%
! AGATTCATAGGAACTAGTTT+AGG + chr5.4:73399844-73399863 None:intergenic 30.0%
! ATCAACTGTTCTCTTTTATC+TGG + chr5.4:73400183-73400202 None:intergenic 30.0%
! ATTTTATACACCATCTTGAG+GGG + chr5.4:73399895-73399914 None:intergenic 30.0%
! GTTTGAGATAAGTGTTGTTA+AGG - chr5.4:73400424-73400443 MS.gene038416:intron 30.0%
! TAATGGTTATTCTGGATTAG+TGG - chr5.4:73399992-73400011 MS.gene038416:intron 30.0%
! TACTAGGGTATTCTTATGTT+AGG + chr5.4:73399037-73399056 None:intergenic 30.0%
! TGCTGATTACAACATACAAA+AGG - chr5.4:73399177-73399196 MS.gene038416:intron 30.0%
! TTTTATCGCTTGAATATCCA+GGG - chr5.4:73400621-73400640 MS.gene038416:CDS 30.0%
!! ACTGATTTTGTGATTCTAAC+TGG - chr5.4:73399056-73399075 MS.gene038416:intron 30.0%
!! AGACTAGCTCTTTTTAACAT+AGG + chr5.4:73399564-73399583 None:intergenic 30.0%
!! ATTTTGGGTCTAGTAGAATT+GGG - chr5.4:73400586-73400605 MS.gene038416:CDS 30.0%
AAAGGAATCAACACTTCACT+TGG - chr5.4:73399195-73399214 MS.gene038416:intron 35.0%
ATAAAGGTGAATATTGGGTG+GGG - chr5.4:73400260-73400279 MS.gene038416:intron 35.0%
ATAACCATTACAATAGCTGG+AGG + chr5.4:73399982-73400001 None:intergenic 35.0%
ATCTTTGTGAAGACTTTGAC+CGG - chr5.4:73398832-73398851 MS.gene038416:CDS 35.0%
ATTATGCACCTTGAGGATAA+AGG - chr5.4:73400244-73400263 MS.gene038416:intron 35.0%
GAACGTGTTGAAGAAAAAGA+GGG - chr5.4:73399319-73399338 MS.gene038416:intron 35.0%
GATAAAGGTGAATATTGGGT+GGG - chr5.4:73400259-73400278 MS.gene038416:intron 35.0%
GCAAGTATGTTAGAGCAATA+AGG - chr5.4:73399752-73399771 MS.gene038416:intron 35.0%
GTTGCCTATGATTAAGAAGA+GGG - chr5.4:73400551-73400570 MS.gene038416:intron 35.0%
TCTGAACCAGTTTCTATCAT+AGG - chr5.4:73400678-73400697 MS.gene038416:CDS 35.0%
TGTACTCCTATGATAGAAAC+TGG + chr5.4:73400687-73400706 None:intergenic 35.0%
TGTTGCCTATGATTAAGAAG+AGG - chr5.4:73400550-73400569 MS.gene038416:intron 35.0%
TTCACTGAACAAAGCATGAA+TGG - chr5.4:73400896-73400915 MS.gene038416:intron 35.0%
! AGCTAAAGAGTACAACATTG+AGG - chr5.4:73401029-73401048 MS.gene038416:CDS 35.0%
! CTTTTATCGCTTGAATATCC+AGG - chr5.4:73400620-73400639 MS.gene038416:CDS 35.0%
! GATAAGTGTTGTTAAGGAGT+TGG - chr5.4:73400430-73400449 MS.gene038416:intron 35.0%
! GATTTTGTGATTCTAACTGG+TGG - chr5.4:73399059-73399078 MS.gene038416:intron 35.0%
! GCTAAAGAGTACAACATTGA+GGG - chr5.4:73401030-73401049 MS.gene038416:CDS 35.0%
! GTTGTGGAATATGTGGTTTT+AGG - chr5.4:73399081-73399100 MS.gene038416:intron 35.0%
! TTTTTACACTCAACCTGAAC+TGG - chr5.4:73399629-73399648 MS.gene038416:intron 35.0%
!! CATTTTGGGTCTAGTAGAAT+TGG - chr5.4:73400585-73400604 MS.gene038416:CDS 35.0%
!! GTTAAAAAGAGCTAGTCTTG+TGG - chr5.4:73399566-73399585 MS.gene038416:intron 35.0%
!!! GAATATGTGGTTTTAGGACA+AGG - chr5.4:73399087-73399106 MS.gene038416:intron 35.0%
!!! GTTTTTTTTTAGGGCTCAGT+TGG + chr5.4:73400110-73400129 None:intergenic 35.0%
AAAATCAACCTCTGCTGATC+AGG + chr5.4:73399124-73399143 None:intergenic 40.0%
AACGCCCTCTTCTTAATCAT+AGG + chr5.4:73400558-73400577 None:intergenic 40.0%
AACTCCTCCAGCTATTGTAA+TGG - chr5.4:73399975-73399994 MS.gene038416:intron 40.0%
AAGAAGAAATACATGGGGGT+GGG - chr5.4:73400390-73400409 MS.gene038416:intron 40.0%
ATGTTAGGGTCATTCTAGCA+AGG + chr5.4:73399022-73399041 None:intergenic 40.0%
CAGAAAGTTATGTAGATCCC+TGG + chr5.4:73400641-73400660 None:intergenic 40.0%
CTAAACCTAGAAACCAGTTC+AGG + chr5.4:73399645-73399664 None:intergenic 40.0%
GGAACGTGTTGAAGAAAAAG+AGG - chr5.4:73399318-73399337 MS.gene038416:intron 40.0%
GGATAAAGGTGAATATTGGG+TGG - chr5.4:73400258-73400277 MS.gene038416:intron 40.0%
TAAAGGTGAATATTGGGTGG+GGG - chr5.4:73400261-73400280 MS.gene038416:intron 40.0%
TAAGAAGAAATACATGGGGG+TGG - chr5.4:73400389-73400408 MS.gene038416:intron 40.0%
TCTTCAATAACCCCTCAAGA+TGG - chr5.4:73399882-73399901 MS.gene038416:intron 40.0%
TCTTGAGGGGTTATTGAAGA+TGG + chr5.4:73399882-73399901 None:intergenic 40.0%
! AAAGAGTACAACATTGAGGG+TGG - chr5.4:73401033-73401052 MS.gene038416:CDS 40.0%
! AAGTGTTGTTAAGGAGTTGG+AGG - chr5.4:73400433-73400452 MS.gene038416:intron 40.0%
! AGCATTTTGCCCAGATTCAT+AGG + chr5.4:73399856-73399875 None:intergenic 40.0%
!! AGTTTTGCATCTAGAGCGAA+AGG - chr5.4:73400044-73400063 MS.gene038416:intron 40.0%
!!! ATGTGGTTTTAGGACAAGGA+AGG - chr5.4:73399091-73399110 MS.gene038416:intron 40.0%
!!! GTTAGTTTTTTCTCCTTGCC+AGG + chr5.4:73400474-73400493 None:intergenic 40.0%
ACCATCTTCCAACTGCTTAC+CGG + chr5.4:73399149-73399168 None:intergenic 45.0%
ACTGGTGGTTGTGGAATATG+TGG - chr5.4:73399074-73399093 MS.gene038416:intron 45.0%
GTCTAGTAGAATTGGGACCA+GGG - chr5.4:73400593-73400612 MS.gene038416:CDS 45.0%
GTGATTCTAACTGGTGGTTG+TGG - chr5.4:73399065-73399084 MS.gene038416:intron 45.0%
TCTAGTAGAATTGGGACCAG+GGG - chr5.4:73400594-73400613 MS.gene038416:CDS 45.0%
TGCTCTGCTGTTGAGCAAAT+CGG - chr5.4:73399937-73399956 MS.gene038416:intron 45.0%
! CTCAACCTGAACTGGTTTCT+AGG - chr5.4:73399637-73399656 MS.gene038416:intron 45.0%
! GATTTTTGCCGGTAAGCAGT+TGG - chr5.4:73399138-73399157 MS.gene038416:intron 45.0%
!! CAGCAGAGGTTGATTTTTGC+CGG - chr5.4:73399127-73399146 MS.gene038416:intron 45.0%
!! GGGGTAAGGAGAGTATTGAT+AGG - chr5.4:73400280-73400299 MS.gene038416:intron 45.0%
!! TCACTTGGTGCTTGCATTGA+GGG - chr5.4:73401065-73401084 MS.gene038416:CDS 45.0%
!! TTCACTTGGTGCTTGCATTG+AGG - chr5.4:73401064-73401083 MS.gene038416:CDS 45.0%
!!! AGGGCGTTGAGAAGTCATTT+TGG - chr5.4:73400570-73400589 MS.gene038416:CDS 45.0%
!!! GGGCGTTGAGAAGTCATTTT+GGG - chr5.4:73400571-73400590 MS.gene038416:CDS 45.0%
!!! AATAAAAAATGTTTTTTTTT+AGG + chr5.4:73400120-73400139 None:intergenic 5.0%
!!! ATAAAAAATGTTTTTTTTTA+GGG + chr5.4:73400119-73400138 None:intergenic 5.0%
AGAAAGGGGGTAACCTAACC+TGG + chr5.4:73398918-73398937 None:intergenic 50.0%
AGGGCTCAGTTGGTTGCTAA+AGG + chr5.4:73400100-73400119 None:intergenic 50.0%
ATCAACCTCTGCTGATCAGG+AGG + chr5.4:73399121-73399140 None:intergenic 50.0%
CAACACTTCACTTGGTCCTC+AGG - chr5.4:73399203-73399222 MS.gene038416:intron 50.0%
CTAGTAGAATTGGGACCAGG+GGG - chr5.4:73400595-73400614 MS.gene038416:CDS 50.0%
CTCGAGGGTGATAGTCTTTC+CGG + chr5.4:73398854-73398873 None:intergenic 50.0%
GCTGTTGAGCAAATCGGCAA+TGG - chr5.4:73399943-73399962 MS.gene038416:intron 50.0%
GGGTAACCTAACCTGGATCT+TGG + chr5.4:73398911-73398930 None:intergenic 50.0%
GGTCTAGTAGAATTGGGACC+AGG - chr5.4:73400592-73400611 MS.gene038416:CDS 50.0%
GTGAATATTGGGTGGGGGTA+AGG - chr5.4:73400266-73400285 MS.gene038416:intron 50.0%
GTTAAGGAGTTGGAGGTCCA+GGG - chr5.4:73400440-73400459 MS.gene038416:intron 50.0%
GTTTCAAACCTCTGCTGCAC+AGG + chr5.4:73399352-73399371 None:intergenic 50.0%
TAGTAGAATTGGGACCAGGG+GGG - chr5.4:73400596-73400615 MS.gene038416:CDS 50.0%
TCAACCTCTGCTGATCAGGA+GGG + chr5.4:73399120-73399139 None:intergenic 50.0%
TCAAGGCCAAGATCCAGGTT+AGG - chr5.4:73398902-73398921 MS.gene038416:CDS 50.0%
TCACTTGGTCCTCAGGCTTA+GGG - chr5.4:73399210-73399229 MS.gene038416:intron 50.0%
TGCTCAACAGCAGAGCAAGT+TGG + chr5.4:73399934-73399953 None:intergenic 50.0%
TGTTAAGGAGTTGGAGGTCC+AGG - chr5.4:73400439-73400458 MS.gene038416:intron 50.0%
TTCACTTGGTCCTCAGGCTT+AGG - chr5.4:73399209-73399228 MS.gene038416:intron 50.0%
!! CACTTGGTGCTTGCATTGAG+GGG - chr5.4:73401066-73401085 MS.gene038416:CDS 50.0%
CAACGTCAAGGCCAAGATCC+AGG - chr5.4:73398897-73398916 MS.gene038416:CDS 55.0%
CAAGCGATAAAAGACCCCCC+TGG + chr5.4:73400613-73400632 None:intergenic 55.0%
CACTTGGTCCTCAGGCTTAG+GGG - chr5.4:73399211-73399230 MS.gene038416:intron 55.0%
CGACACCATCGACAACGTCA+AGG - chr5.4:73398885-73398904 MS.gene038416:CDS 55.0%
CGGAAAGACTATCACCCTCG+AGG - chr5.4:73398852-73398871 MS.gene038416:CDS 55.0%
CTTGCCAGGACTTGAAACCC+TGG + chr5.4:73400460-73400479 None:intergenic 55.0%
GCCGGTAAGCAGTTGGAAGA+TGG - chr5.4:73399145-73399164 MS.gene038416:intron 55.0%
GTATCCCTCCTGATCAGCAG+AGG - chr5.4:73399113-73399132 MS.gene038416:intron 55.0%
GTATTCCACCTGTGCAGCAG+AGG - chr5.4:73399341-73399360 MS.gene038416:intron 55.0%
TCAAACCTCTGCTGCACAGG+TGG + chr5.4:73399349-73399368 None:intergenic 55.0%
TGCTGCAGGCTCATCTATGC+TGG - chr5.4:73400982-73401001 MS.gene038416:intron 55.0%
! AGGTCCAGGGTTTCAAGTCC+TGG - chr5.4:73400453-73400472 MS.gene038416:intron 55.0%
! CAGGGTTTCAAGTCCTGGCA+AGG - chr5.4:73400458-73400477 MS.gene038416:intron 55.0%
! GGGTGGTTCTGTGCTTCACT+TGG - chr5.4:73401050-73401069 MS.gene038416:CDS 55.0%
! TTGGTGCTTGCATTGAGGGG+TGG - chr5.4:73401069-73401088 MS.gene038416:CDS 55.0%
!! CTTGGCCTTGACGTTGTCGA+TGG + chr5.4:73398893-73398912 None:intergenic 55.0%
AGCCTGCAGCAAGTGACAGC+AGG + chr5.4:73400973-73400992 None:intergenic 60.0%
ATGGGGGTGGGTAGTGCAAC+TGG - chr5.4:73400402-73400421 MS.gene038416:intron 60.0%
GTCGCTGCTCTCAACCTCGA+GGG + chr5.4:73398869-73398888 None:intergenic 60.0%
TGGTTCCTCCCCTAAGCCTG+AGG + chr5.4:73399222-73399241 None:intergenic 60.0%
TGTCGCTGCTCTCAACCTCG+AGG + chr5.4:73398870-73398889 None:intergenic 60.0%
TTGGTCCTCAGGCTTAGGGG+AGG - chr5.4:73399214-73399233 MS.gene038416:intron 60.0%
! CACCTGCTGTCACTTGCTGC+AGG - chr5.4:73400968-73400987 MS.gene038416:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 73398826 73401098 73398826 ID=MS.gene038416
chr5.4 mRNA 73398826 73401098 73398826 ID=MS.gene038416.t1;Parent=MS.gene038416
chr5.4 exon 73401006 73401098 73401006 ID=MS.gene038416.t1.exon1;Parent=MS.gene038416.t1
chr5.4 CDS 73401006 73401098 73401006 ID=cds.MS.gene038416.t1;Parent=MS.gene038416.t1
chr5.4 exon 73400562 73400821 73400562 ID=MS.gene038416.t1.exon2;Parent=MS.gene038416.t1
chr5.4 CDS 73400562 73400821 73400562 ID=cds.MS.gene038416.t1;Parent=MS.gene038416.t1
chr5.4 exon 73398826 73398934 73398826 ID=MS.gene038416.t1.exon3;Parent=MS.gene038416.t1
chr5.4 CDS 73398826 73398934 73398826 ID=cds.MS.gene038416.t1;Parent=MS.gene038416.t1
Gene Sequence

>MS.gene038416

ATGCAGATCTTTGTGAAGACTTTGACCGGAAAGACTATCACCCTCGAGGTTGAGAGCAGCGACACCATCGACAACGTCAAGGCCAAGATCCAGGTTAGGTTACCCCCTTTCTTTTCTACTTTCTAAATACTTAATTAGGGTTTATGATGATCATTGATTTTGTTAGTTAGGGTTCTATCGAAACTCAATTGATCCTTGCTAGAATGACCCTAACATAAGAATACCCTAGTACTGATTTTGTGATTCTAACTGGTGGTTGTGGAATATGTGGTTTTAGGACAAGGAAGGTATCCCTCCTGATCAGCAGAGGTTGATTTTTGCCGGTAAGCAGTTGGAAGATGGTCGTACTCTTGCTGATTACAACATACAAAAGGAATCAACACTTCACTTGGTCCTCAGGCTTAGGGGAGGAACCATGATTAAAGTCAAGACTTTAACTGGTAAAGAAATTGAAATTGACATTGAGCCTACTGATACTATTGATCGTATCAAGGAACGTGTTGAAGAAAAAGAGGGTATTCCACCTGTGCAGCAGAGGTTTGAAACTCATAATTCATTGCAAATAATCTAAAGAATGTTTGGAGTGTTTTTAAGTTATAAATATTCATGCATTAAGTCATGCACCATTTGAATTTTTAATTAGCAAGTTACTGTTAATATGATAGGTTTGTTAGTTAAGAGATTTTTATTTATTTAGTTAGGCTGGGATAGTTTGAAGAAACGAAAGATGTGTTGCCTATGTTAAAAAGAGCTAGTCTTGTGGCAAGAAATAACTATTTGAACTAGTTTATTTATTTTGTACATTTTTACACTCAACCTGAACTGGTTTCTAGGTTTAGAAATAACTATTTTTTTCACTTCACGGATCTGATCAAAGAATAGTATATAAGGTAGTATTTATGCAGATTTGGTTGACTCTTTCTGATGCAAGTATGTTAGAGCAATAAGGAAACAAAAACGTAAATATAAAATTTTCATAAACACGTGTCAATTGATTTGATTCATATTTATTTCTCCTAAACTAGTTCCTATGAATCTGGGCAAAATGCTCAACCATCTTCAATAACCCCTCAAGATGGTGTATAAAATTAGATATTCGTCATGTCCAACTTGCTCTGCTGTTGAGCAAATCGGCAATGGCACACAAATAACTCCTCCAGCTATTGTAATGGTTATTCTGGATTAGTGGCAAGAGATAAAATGACTCCAATTATATTTAGTTTTGCATCTAGAGCGAAAGGTAAAAACGAATCACATACATTTTATTGAAGCCTTTAGCAACCAACTGAGCCCTAAAAAAAAACATTTTTTATTTATTTTTAAATTGTTCTTGACACACGATCCTTTTATGATTCCAGATAAAAGAGAACAGTTGATGGTTTGAAACTCGCATAAGAAGTTTTATGTTTAGCAATTAAATTATGCACCTTGAGGATAAAGGTGAATATTGGGTGGGGGTAAGGAGAGTATTGATAGGTCTGTTTAGAGATTTATTTAGCTAGTTTGGATGAGATAGTAAGAAGAAATACGCGTGTTGCCTATGATTTTGTTAAGATGAGATAGTAAGAAGAAATACATGGGGGTGGGTAGTGCAACTGGTTTGAGATAAGTGTTGTTAAGGAGTTGGAGGTCCAGGGTTTCAAGTCCTGGCAAGGAGAAAAAACTAACAACAATTAACATACTAACATTCGCCATTCAAAACAAAAAGTAATAAGAAATACATGTGTTGCCTATGATTAAGAAGAGGGCGTTGAGAAGTCATTTTGGGTCTAGTAGAATTGGGACCAGGGGGGTCTTTTATCGCTTGAATATCCAGGGATCTACATAACTTTCTGAATGTTTGTGCGCTCAATCTGAACCAGTTTCTATCATAGGAGTACATAATTTTCTACTTGTCATTGATATATCTTATACAGGTATCATTGAGTTGGATTGCATATTTATTGGTAGATCTATTGAACAATGCTTAATTAGTCGATATTCAAAAACAAAACTGAATTTTGATTCTGACGCTTTAATCTGCTGTTAATTTAGTTTGCACTTGCAGTCTTAGAAATACGTTTTGCTTTCTTCACTGAACAAAGCATGAATGGAAAATTAAATATTTTTTTTCTTAATTCTTTTGGAAACAGTAGAATCTTACACCTGCTGTCACTTGCTGCAGGCTCATCTATGCTGGTAAGCAGCTTGCTGATGACAAAACAGCTAAAGAGTACAACATTGAGGGTGGTTCTGTGCTTCACTTGGTGCTTGCATTGAGGGGTGGTAATTAG
Protein sequence

>MS.gene038416.t1

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGN