Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072679.t1 | XP_003625999.1 | 95.4 | 216 | 10 | 0 | 1 | 216 | 1 | 216 | 3.00E-107 | 397.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072679.t1 | Q93W77 | 67.0 | 203 | 53 | 4 | 24 | 216 | 33 | 231 | 4.6e-64 | 245.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072679.t1 | G7KTN7 | 95.4 | 216 | 10 | 0 | 1 | 216 | 1 | 216 | 2.2e-107 | 397.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050670 | MS.gene072679 | 0.811503 | 6.78E-51 | -1.69E-46 |
| MS.gene051525 | MS.gene072679 | 0.834055 | 3.74E-56 | -1.69E-46 |
| MS.gene051582 | MS.gene072679 | 0.868006 | 8.99E-66 | -1.69E-46 |
| MS.gene052011 | MS.gene072679 | -0.800686 | 1.28E-48 | -1.69E-46 |
| MS.gene05413 | MS.gene072679 | 0.809646 | 1.71E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene072679 | 0.808916 | 2.45E-50 | -1.69E-46 |
| MS.gene054918 | MS.gene072679 | 0.810875 | 9.27E-51 | -1.69E-46 |
| MS.gene05553 | MS.gene072679 | 0.804141 | 2.49E-49 | -1.69E-46 |
| MS.gene056723 | MS.gene072679 | 0.802257 | 6.11E-49 | -1.69E-46 |
| MS.gene059141 | MS.gene072679 | 0.800319 | 1.52E-48 | -1.69E-46 |
| MS.gene059247 | MS.gene072679 | 0.809282 | 2.04E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene072679 | 0.805494 | 1.30E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072679.t1 | MTR_7g109850 | 95.370 | 216 | 10 | 0 | 1 | 216 | 1 | 216 | 2.64e-151 | 419 |
| MS.gene072679.t1 | MTR_8g038785 | 87.121 | 132 | 17 | 0 | 1 | 132 | 1 | 132 | 7.97e-75 | 236 |
| MS.gene072679.t1 | MTR_2g005900 | 42.949 | 156 | 83 | 3 | 64 | 214 | 68 | 222 | 3.84e-30 | 111 |
| MS.gene072679.t1 | MTR_2g036690 | 39.860 | 143 | 84 | 2 | 67 | 208 | 89 | 230 | 9.79e-24 | 95.1 |
| MS.gene072679.t1 | MTR_2g036690 | 50.538 | 93 | 42 | 2 | 69 | 158 | 91 | 182 | 1.47e-19 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072679.t1 | AT4G01940 | 66.667 | 204 | 54 | 4 | 23 | 216 | 32 | 231 | 1.25e-88 | 261 |
| MS.gene072679.t1 | AT5G49940 | 35.897 | 195 | 109 | 5 | 25 | 214 | 51 | 234 | 1.24e-26 | 102 |
| MS.gene072679.t1 | AT5G49940 | 40.146 | 137 | 67 | 4 | 25 | 161 | 51 | 172 | 2.93e-22 | 90.1 |
| MS.gene072679.t1 | AT4G25910 | 32.719 | 217 | 127 | 7 | 12 | 210 | 11 | 226 | 1.59e-21 | 89.4 |
Find 42 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTGCACAATATCTTTAA+TGG | 0.141568 | 7.3:+5199311 | None:intergenic |
| CTCAACCACAACTATGAAAA+TGG | 0.150095 | 7.3:-5199370 | MS.gene072679:CDS |
| CGCGTTCTTAAGGAGAAATT+TGG | 0.260422 | 7.3:-5199339 | MS.gene072679:CDS |
| TTCGTTGGTATTGAACAAAT+TGG | 0.356289 | 7.3:+5199699 | None:intergenic |
| GGGAATCGAACGCGTTCTTA+AGG | 0.368074 | 7.3:-5199349 | MS.gene072679:CDS |
| AAGGTAACATTGAGAATATC+TGG | 0.389748 | 7.3:+5197984 | None:intergenic |
| GAAGTTCTTGAATATTGCTT+TGG | 0.401148 | 7.3:+5199612 | None:intergenic |
| CTGGTTCTCGTTAGCGGTAG+AGG | 0.402092 | 7.3:+5199569 | None:intergenic |
| TAACGAGAACCAGTCTTCTC+CGG | 0.458318 | 7.3:-5199559 | MS.gene072679:CDS |
| TCAACCACAACTATGAAAAT+GGG | 0.480712 | 7.3:-5199369 | MS.gene072679:CDS |
| AGTATAATCCCGGAGAAGAC+TGG | 0.483617 | 7.3:+5199550 | None:intergenic |
| GGACCTGAGTCCATTGGATC+AGG | 0.493608 | 7.3:-5198035 | MS.gene072679:CDS |
| AGAAGACTGGTTCTCGTTAG+CGG | 0.500401 | 7.3:+5199563 | None:intergenic |
| AGGTGTTAAAGCTGCGATCA+AGG | 0.501612 | 7.3:-5198015 | MS.gene072679:CDS |
| GATGTTGTATCCGTTGAAAA+CGG | 0.506210 | 7.3:-5199438 | MS.gene072679:CDS |
| TTCATAGTTGTGGTTGAGCT+AGG | 0.507201 | 7.3:+5199375 | None:intergenic |
| ATTCTCAAATTCAGTTTCGT+TGG | 0.513374 | 7.3:+5199684 | None:intergenic |
| TATGTTGGACCTGAGTCCAT+TGG | 0.522225 | 7.3:-5198041 | MS.gene072679:CDS |
| AGCAGTGAGGTCGAATTTCG+TGG | 0.529405 | 7.3:+5199524 | None:intergenic |
| AACGAGAACCAGTCTTCTCC+GGG | 0.536226 | 7.3:-5199558 | MS.gene072679:CDS |
| TTCGTGGCGGAGTATAATCC+CGG | 0.541925 | 7.3:+5199540 | None:intergenic |
| GTCGTTTCTCTTAAGCTACA+AGG | 0.546334 | 7.3:-5199414 | MS.gene072679:CDS |
| AATTGCTACCTAGGTGGAGA+AGG | 0.556964 | 7.3:+5197965 | None:intergenic |
| GACTGTGTTGTGGAATATGT+TGG | 0.562518 | 7.3:-5198056 | MS.gene072679:CDS |
| AGCAAGGGAAACAACGGTTG+AGG | 0.563035 | 7.3:-5199274 | MS.gene072679:intron |
| TGAAGGTGGTGACTGTGTTG+TGG | 0.573198 | 7.3:-5198066 | MS.gene072679:CDS |
| CCTCCGTCAGAGATGAGGTA+AGG | 0.579366 | 7.3:+5199468 | None:intergenic |
| CGTCCTTACCTCATCTCTGA+CGG | 0.582206 | 7.3:-5199471 | MS.gene072679:CDS |
| AGCTTTAACACCTGATCCAA+TGG | 0.583998 | 7.3:+5198025 | None:intergenic |
| CGTTTCCTCCGTCAGAGATG+AGG | 0.588496 | 7.3:+5199463 | None:intergenic |
| CAATGTTACCTTCTCCACCT+AGG | 0.589162 | 7.3:-5197973 | None:intergenic |
| CGTTAGCGGTAGAGGATGAA+CGG | 0.600517 | 7.3:+5199577 | None:intergenic |
| TGTTTGATGATGATCAAGCA+AGG | 0.620834 | 7.3:-5199290 | MS.gene072679:CDS |
| GTTTGATGATGATCAAGCAA+GGG | 0.625912 | 7.3:-5199289 | MS.gene072679:CDS |
| CCTTACCTCATCTCTGACGG+AGG | 0.627657 | 7.3:-5199468 | MS.gene072679:CDS |
| TCATCTAGAGATACTGAGAC+CGG | 0.630070 | 7.3:-5198129 | MS.gene072679:CDS |
| ACACCTGATCCAATGGACTC+AGG | 0.634250 | 7.3:+5198032 | None:intergenic |
| GAATTGAATTGCTACCTAGG+TGG | 0.663541 | 7.3:+5197959 | None:intergenic |
| TGATCAAGCAAGGGAAACAA+CGG | 0.689446 | 7.3:-5199280 | MS.gene072679:CDS |
| AGAGGATGAACGGATTACTG+TGG | 0.730832 | 7.3:+5199587 | None:intergenic |
| GATCGACGTTTGAAGCAGTG+AGG | 0.744018 | 7.3:+5199511 | None:intergenic |
| AGTGAGGTCGAATTTCGTGG+CGG | 0.769982 | 7.3:+5199527 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATATACATACAAACAA+AGG | - | chr7.3:5198608-5198627 | MS.gene072679:intron | 15.0% |
| !!! | AATGTTTTTATAACCTATAT+TGG | - | chr7.3:5199024-5199043 | MS.gene072679:intron | 15.0% |
| !!! | TTGATATTGAAAATTGATTT+TGG | + | chr7.3:5199391-5199410 | None:intergenic | 15.0% |
| !! | AAGTTAGTAGTATTAATTAG+GGG | + | chr7.3:5198575-5198594 | None:intergenic | 20.0% |
| !! | AATAGTAAATGCAAAAAGTA+AGG | + | chr7.3:5198453-5198472 | None:intergenic | 20.0% |
| !! | ACAAGTTAGTAGTATTAATT+AGG | + | chr7.3:5198577-5198596 | None:intergenic | 20.0% |
| !! | AGAAATGTGAAAAATACAAA+AGG | - | chr7.3:5198691-5198710 | MS.gene072679:intron | 20.0% |
| !! | ATAGTAAATGCAAAAAGTAA+GGG | + | chr7.3:5198452-5198471 | None:intergenic | 20.0% |
| !! | ATATGAAGTGATCAATTTAT+TGG | - | chr7.3:5198842-5198861 | MS.gene072679:intron | 20.0% |
| !! | ATATTAGTTAACATCATGAA+AGG | + | chr7.3:5198889-5198908 | None:intergenic | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+GGG | + | chr7.3:5198576-5198595 | None:intergenic | 20.0% |
| !! | GAAATGTGAAAAATACAAAA+GGG | - | chr7.3:5198692-5198711 | MS.gene072679:intron | 20.0% |
| !! | GGACAAAAATAAAATCAAAT+GGG | + | chr7.3:5198506-5198525 | None:intergenic | 20.0% |
| !! | TTGGATAAATAACTTATTTG+CGG | - | chr7.3:5198924-5198943 | MS.gene072679:intron | 20.0% |
| ! | AATACAAAAGGGTTACATTA+AGG | - | chr7.3:5198703-5198722 | MS.gene072679:intron | 25.0% |
| ! | ATACAAAAGGGTTACATTAA+GGG | - | chr7.3:5198704-5198723 | MS.gene072679:intron | 25.0% |
| ! | CAAAAATAAAATCAAATGGG+TGG | + | chr7.3:5198503-5198522 | None:intergenic | 25.0% |
| ! | GAAATGAAAATGATGAATGT+TGG | - | chr7.3:5199499-5199518 | MS.gene072679:CDS | 25.0% |
| ! | GGGACAAAAATAAAATCAAA+TGG | + | chr7.3:5198507-5198526 | None:intergenic | 25.0% |
| ! | TAGTAAATGCAAAAAGTAAG+GGG | + | chr7.3:5198451-5198470 | None:intergenic | 25.0% |
| ! | TGAAACCAAACATAAACTTA+GGG | + | chr7.3:5199146-5199165 | None:intergenic | 25.0% |
| ! | TGTTAACTAATATAGCAACT+AGG | - | chr7.3:5198896-5198915 | MS.gene072679:intron | 25.0% |
| ! | TTAGAATCAGTGTATGTTAT+TGG | + | chr7.3:5199446-5199465 | None:intergenic | 25.0% |
| ! | TTTATCTAATGTGCATAGAA+AGG | - | chr7.3:5199477-5199496 | MS.gene072679:CDS | 25.0% |
| !! | CTTTTATGGTTGTTAATGAT+TGG | - | chr7.3:5198740-5198759 | MS.gene072679:intron | 25.0% |
| !!! | TATTAATTAGGGGTATCTTT+AGG | + | chr7.3:5198565-5198584 | None:intergenic | 25.0% |
| !!! | TTCCTTTTTAAGCTAGAAAT+TGG | - | chr7.3:5199261-5199280 | MS.gene072679:intron | 25.0% |
| AAGGTAACATTGAGAATATC+TGG | + | chr7.3:5199707-5199726 | None:intergenic | 30.0% | |
| AGACCGGCAATTAAAAATTA+CGG | - | chr7.3:5199575-5199594 | MS.gene072679:CDS | 30.0% | |
| ATGCATCTAGTAATTTGAAG+AGG | + | chr7.3:5198529-5198548 | None:intergenic | 30.0% | |
| ATTCTCAAATTCAGTTTCGT+TGG | + | chr7.3:5198007-5198026 | None:intergenic | 30.0% | |
| CACTTGCACAATATCTTTAA+TGG | + | chr7.3:5198380-5198399 | None:intergenic | 30.0% | |
| CATACAAACAAAGGACAATT+TGG | - | chr7.3:5198617-5198636 | MS.gene072679:intron | 30.0% | |
| CCTATATTGGAGAACTTATA+AGG | - | chr7.3:5199037-5199056 | MS.gene072679:intron | 30.0% | |
| CCTTATAAGTTCTCCAATAT+AGG | + | chr7.3:5199040-5199059 | None:intergenic | 30.0% | |
| GAAGTTCTTGAATATTGCTT+TGG | + | chr7.3:5198079-5198098 | None:intergenic | 30.0% | |
| GCTTAAAAAGGAATCAATTC+TGG | + | chr7.3:5199254-5199273 | None:intergenic | 30.0% | |
| GTGAAACCAAACATAAACTT+AGG | + | chr7.3:5199147-5199166 | None:intergenic | 30.0% | |
| TAAAAAGGAATCAATTCTGG+AGG | + | chr7.3:5199251-5199270 | None:intergenic | 30.0% | |
| TCAACCACAACTATGAAAAT+GGG | - | chr7.3:5198319-5198338 | MS.gene072679:intron | 30.0% | |
| TGCATCTAGTAATTTGAAGA+GGG | + | chr7.3:5198528-5198547 | None:intergenic | 30.0% | |
| ! | ATGAATGTTGGTTGATGTTT+GGG | - | chr7.3:5199511-5199530 | MS.gene072679:CDS | 30.0% |
| ! | TTCGTTGGTATTGAACAAAT+TGG | + | chr7.3:5197992-5198011 | None:intergenic | 30.0% |
| ! | TTTGGTTAAAAGTGAGTTGA+AGG | + | chr7.3:5199373-5199392 | None:intergenic | 30.0% |
| !! | CTCCAATTTCTAGCTTAAAA+AGG | + | chr7.3:5199266-5199285 | None:intergenic | 30.0% |
| !!! | TGAGATTGTGTTGTTTTTGT+TGG | + | chr7.3:5198030-5198049 | None:intergenic | 30.0% |
| AAAAGGGTTACATTAAGGGA+CGG | - | chr7.3:5198708-5198727 | MS.gene072679:intron | 35.0% | |
| ATATAGCAACTAGGTCTGTT+TGG | - | chr7.3:5198905-5198924 | MS.gene072679:intron | 35.0% | |
| CTCAACCACAACTATGAAAA+TGG | - | chr7.3:5198318-5198337 | MS.gene072679:intron | 35.0% | |
| GATGTTGTATCCGTTGAAAA+CGG | - | chr7.3:5198250-5198269 | MS.gene072679:intron | 35.0% | |
| GCATCTAGTAATTTGAAGAG+GGG | + | chr7.3:5198527-5198546 | None:intergenic | 35.0% | |
| GTTGAAGGTAAACTGAATGA+TGG | + | chr7.3:5199358-5199377 | None:intergenic | 35.0% | |
| ! | ATGTTTGGTTTCACTTCTAG+AGG | - | chr7.3:5199153-5199172 | MS.gene072679:intron | 35.0% |
| ! | GATGAATGTTGGTTGATGTT+TGG | - | chr7.3:5199510-5199529 | MS.gene072679:CDS | 35.0% |
| ! | GATTCCCATTTTCATAGTTG+TGG | + | chr7.3:5198326-5198345 | None:intergenic | 35.0% |
| ! | TGTTTGGTTTCACTTCTAGA+GGG | - | chr7.3:5199154-5199173 | MS.gene072679:intron | 35.0% |
| !! | CAAGTTTTATCTGTTGAAGG+TGG | - | chr7.3:5199608-5199627 | MS.gene072679:CDS | 35.0% |
| !! | CCTCCGTAATTTTTAATTGC+CGG | + | chr7.3:5199581-5199600 | None:intergenic | 35.0% |
| !! | GTGCAAGTTTTATCTGTTGA+AGG | - | chr7.3:5199605-5199624 | MS.gene072679:CDS | 35.0% |
| !! | GTTTGATGATGATCAAGCAA+GGG | - | chr7.3:5198399-5198418 | MS.gene072679:intron | 35.0% |
| !! | TGTTTGATGATGATCAAGCA+AGG | - | chr7.3:5198398-5198417 | MS.gene072679:intron | 35.0% |
| !!! | CAAAAGTGGTTTTAAAGGTG+TGG | - | chr7.3:5199179-5199198 | MS.gene072679:intron | 35.0% |
| !!! | CACACCTTTAAAACCACTTT+TGG | + | chr7.3:5199181-5199200 | None:intergenic | 35.0% |
| AACTTAGGGCCAGTTTGAAT+TGG | + | chr7.3:5199132-5199151 | None:intergenic | 40.0% | |
| ACTGGCCCTAAGTTTATGTT+TGG | - | chr7.3:5199138-5199157 | MS.gene072679:intron | 40.0% | |
| CCGGCAATTAAAAATTACGG+AGG | - | chr7.3:5199578-5199597 | MS.gene072679:CDS | 40.0% | |
| CGCGTTCTTAAGGAGAAATT+TGG | - | chr7.3:5198349-5198368 | MS.gene072679:intron | 40.0% | |
| GACTGTGTTGTGGAATATGT+TGG | - | chr7.3:5199632-5199651 | MS.gene072679:CDS | 40.0% | |
| GTCGTTTCTCTTAAGCTACA+AGG | - | chr7.3:5198274-5198293 | MS.gene072679:intron | 40.0% | |
| TCAGATACGCCAATTCAAAC+TGG | - | chr7.3:5199120-5199139 | MS.gene072679:intron | 40.0% | |
| TCATCTAGAGATACTGAGAC+CGG | - | chr7.3:5199559-5199578 | MS.gene072679:CDS | 40.0% | |
| TGATCAAGCAAGGGAAACAA+CGG | - | chr7.3:5198408-5198427 | MS.gene072679:intron | 40.0% | |
| TGGGTGGTAACATTAAGTGA+CGG | + | chr7.3:5198487-5198506 | None:intergenic | 40.0% | |
| TTCATAGTTGTGGTTGAGCT+AGG | + | chr7.3:5198316-5198335 | None:intergenic | 40.0% | |
| ! | AGCTTTAACACCTGATCCAA+TGG | + | chr7.3:5199666-5199685 | None:intergenic | 40.0% |
| ! | GTTTGGTTTCACTTCTAGAG+GGG | - | chr7.3:5199155-5199174 | MS.gene072679:intron | 40.0% |
| ! | TGGTAACATTAAGTGACGGA+GGG | + | chr7.3:5198483-5198502 | None:intergenic | 40.0% |
| !!! | TGTTTGGGTGTGGGTTTTTT+AGG | - | chr7.3:5199526-5199545 | MS.gene072679:CDS | 40.0% |
| AGGTGTTAAAGCTGCGATCA+AGG | - | chr7.3:5199673-5199692 | MS.gene072679:CDS | 45.0% | |
| AGTATAATCCCGGAGAAGAC+TGG | + | chr7.3:5198141-5198160 | None:intergenic | 45.0% | |
| GAGCTCATCAATTGGCGTTT+GGG | + | chr7.3:5199102-5199121 | None:intergenic | 45.0% | |
| GCGTATCTGAGCTCATCAAT+TGG | + | chr7.3:5199110-5199129 | None:intergenic | 45.0% | |
| GTGGTAACATTAAGTGACGG+AGG | + | chr7.3:5198484-5198503 | None:intergenic | 45.0% | |
| TAACGAGAACCAGTCTTCTC+CGG | - | chr7.3:5198129-5198148 | MS.gene072679:CDS | 45.0% | |
| TATGTTGGACCTGAGTCCAT+TGG | - | chr7.3:5199647-5199666 | MS.gene072679:CDS | 45.0% | |
| TGAGCTCATCAATTGGCGTT+TGG | + | chr7.3:5199103-5199122 | None:intergenic | 45.0% | |
| ! | AGAAGACTGGTTCTCGTTAG+CGG | + | chr7.3:5198128-5198147 | None:intergenic | 45.0% |
| ! | GTTGGTTGATGTTTGGGTGT+GGG | - | chr7.3:5199517-5199536 | MS.gene072679:CDS | 45.0% |
| ! | TGTTGGTTGATGTTTGGGTG+TGG | - | chr7.3:5199516-5199535 | MS.gene072679:CDS | 45.0% |
| !! | AGAAACGACGCCGTTTTCAA+CGG | + | chr7.3:5198263-5198282 | None:intergenic | 45.0% |
| !! | AGAGGATGAACGGATTACTG+TGG | + | chr7.3:5198104-5198123 | None:intergenic | 45.0% |
| !!! | GACGGAGGGAGTATCTTTTA+TGG | - | chr7.3:5198726-5198745 | MS.gene072679:intron | 45.0% |
| !!! | GGGGCCAAAAGTGGTTTTAA+AGG | - | chr7.3:5199174-5199193 | MS.gene072679:intron | 45.0% |
| !!! | TTGGGTGTGGGTTTTTTAGG+TGG | - | chr7.3:5199529-5199548 | MS.gene072679:CDS | 45.0% |
| AACGAGAACCAGTCTTCTCC+GGG | - | chr7.3:5198130-5198149 | MS.gene072679:CDS | 50.0% | |
| AGCAAGGGAAACAACGGTTG+AGG | - | chr7.3:5198414-5198433 | MS.gene072679:intron | 50.0% | |
| AGCAGTGAGGTCGAATTTCG+TGG | + | chr7.3:5198167-5198186 | None:intergenic | 50.0% | |
| AGGGTTACATTAAGGGACGG+AGG | - | chr7.3:5198711-5198730 | MS.gene072679:intron | 50.0% | |
| AGTGAGGTCGAATTTCGTGG+CGG | + | chr7.3:5198164-5198183 | None:intergenic | 50.0% | |
| CGTCCTTACCTCATCTCTGA+CGG | - | chr7.3:5198217-5198236 | MS.gene072679:intron | 50.0% | |
| CGTTAGCGGTAGAGGATGAA+CGG | + | chr7.3:5198114-5198133 | None:intergenic | 50.0% | |
| GGGAATCGAACGCGTTCTTA+AGG | - | chr7.3:5198339-5198358 | MS.gene072679:intron | 50.0% | |
| GGGTTACATTAAGGGACGGA+GGG | - | chr7.3:5198712-5198731 | MS.gene072679:intron | 50.0% | |
| TGAAGGTGGTGACTGTGTTG+TGG | - | chr7.3:5199622-5199641 | MS.gene072679:CDS | 50.0% | |
| ! | ACACCTGATCCAATGGACTC+AGG | + | chr7.3:5199659-5199678 | None:intergenic | 50.0% |
| ! | ACTTCTAGAGGGGCCAAAAG+TGG | - | chr7.3:5199165-5199184 | MS.gene072679:intron | 50.0% |
| ! | GATCGACGTTTGAAGCAGTG+AGG | + | chr7.3:5198180-5198199 | None:intergenic | 50.0% |
| ! | TTCGTGGCGGAGTATAATCC+CGG | + | chr7.3:5198151-5198170 | None:intergenic | 50.0% |
| CCTCCGTCAGAGATGAGGTA+AGG | + | chr7.3:5198223-5198242 | None:intergenic | 55.0% | |
| CCTTACCTCATCTCTGACGG+AGG | - | chr7.3:5198220-5198239 | MS.gene072679:intron | 55.0% | |
| CGTTTCCTCCGTCAGAGATG+AGG | + | chr7.3:5198228-5198247 | None:intergenic | 55.0% | |
| GGACCTGAGTCCATTGGATC+AGG | - | chr7.3:5199653-5199672 | MS.gene072679:CDS | 55.0% | |
| ! | CTGGTTCTCGTTAGCGGTAG+AGG | + | chr7.3:5198122-5198141 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 5197974 | 5199736 | 5197974 | ID=MS.gene072679 |
| chr7.3 | mRNA | 5197974 | 5199736 | 5197974 | ID=MS.gene072679.t1;Parent=MS.gene072679 |
| chr7.3 | exon | 5199275 | 5199736 | 5199275 | ID=MS.gene072679.t1.exon1;Parent=MS.gene072679.t1 |
| chr7.3 | CDS | 5199275 | 5199736 | 5199275 | ID=cds.MS.gene072679.t1;Parent=MS.gene072679.t1 |
| chr7.3 | exon | 5197974 | 5198162 | 5197974 | ID=MS.gene072679.t1.exon2;Parent=MS.gene072679.t1 |
| chr7.3 | CDS | 5197974 | 5198162 | 5197974 | ID=cds.MS.gene072679.t1;Parent=MS.gene072679.t1 |
| Gene Sequence |
| Protein sequence |
