Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05413.t1 | RHN52760.1 | 93.7 | 142 | 8 | 1 | 1 | 141 | 1 | 142 | 2.20E-69 | 271.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05413.t1 | P09761 | 54.1 | 122 | 51 | 2 | 25 | 143 | 80 | 199 | 1.3e-35 | 150.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05413.t1 | A0A072UMD3 | 93.7 | 142 | 8 | 1 | 1 | 141 | 1 | 142 | 1.6e-69 | 271.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051525 | MS.gene05413 | 0.819403 | 1.18E-52 | -1.69E-46 |
| MS.gene051582 | MS.gene05413 | 0.822278 | 2.58E-53 | -1.69E-46 |
| MS.gene052135 | MS.gene05413 | 0.803833 | 2.89E-49 | -1.69E-46 |
| MS.gene052253 | MS.gene05413 | 0.819751 | 9.85E-53 | -1.69E-46 |
| MS.gene053330 | MS.gene05413 | 0.820888 | 5.41E-53 | -1.69E-46 |
| MS.gene054102 | MS.gene05413 | 0.84923 | 3.70E-60 | -1.69E-46 |
| MS.gene054110 | MS.gene05413 | 0.837055 | 6.51E-57 | -1.69E-46 |
| MS.gene05412 | MS.gene05413 | 0.84678 | 1.75E-59 | -1.69E-46 |
| MS.gene05413 | MS.gene054183 | 0.811074 | 8.40E-51 | -1.69E-46 |
| MS.gene05413 | MS.gene054918 | 0.817649 | 2.96E-52 | -1.69E-46 |
| MS.gene05413 | MS.gene055369 | 0.811624 | 6.38E-51 | -1.69E-46 |
| MS.gene05413 | MS.gene05553 | 0.814215 | 1.73E-51 | -1.69E-46 |
| MS.gene05413 | MS.gene056514 | 0.829511 | 4.94E-55 | -1.69E-46 |
| MS.gene05413 | MS.gene05702 | 0.800237 | 1.58E-48 | -1.69E-46 |
| MS.gene05413 | MS.gene057825 | 0.816582 | 5.13E-52 | -1.69E-46 |
| MS.gene05413 | MS.gene058233 | 0.804759 | 1.85E-49 | -1.69E-46 |
| MS.gene05413 | MS.gene059011 | 0.812226 | 4.72E-51 | -1.69E-46 |
| MS.gene05413 | MS.gene059420 | 0.812785 | 3.56E-51 | -1.69E-46 |
| MS.gene05413 | MS.gene061049 | 0.81739 | 3.38E-52 | -1.69E-46 |
| MS.gene05413 | MS.gene061679 | 0.807104 | 5.95E-50 | -1.69E-46 |
| MS.gene05413 | MS.gene063196 | 0.812212 | 4.75E-51 | -1.69E-46 |
| MS.gene05413 | MS.gene064919 | 0.800413 | 1.46E-48 | -1.69E-46 |
| MS.gene05413 | MS.gene065762 | 0.935301 | 1.05E-96 | -1.69E-46 |
| MS.gene05413 | MS.gene065841 | 0.819462 | 1.15E-52 | -1.69E-46 |
| MS.gene05413 | MS.gene069859 | 0.826634 | 2.44E-54 | -1.69E-46 |
| MS.gene05413 | MS.gene070108 | 0.810428 | 1.16E-50 | -1.69E-46 |
| MS.gene05413 | MS.gene07016 | 0.811556 | 6.60E-51 | -1.69E-46 |
| MS.gene05413 | MS.gene070746 | 0.800437 | 1.44E-48 | -1.69E-46 |
| MS.gene05413 | MS.gene072679 | 0.809646 | 1.71E-50 | -1.69E-46 |
| MS.gene05413 | MS.gene07366 | 0.81204 | 5.18E-51 | -1.69E-46 |
| MS.gene05413 | MS.gene073723 | 0.831418 | 1.69E-55 | -1.69E-46 |
| MS.gene05413 | MS.gene07862 | 0.806697 | 7.25E-50 | -1.69E-46 |
| MS.gene05413 | MS.gene07983 | 0.806773 | 6.99E-50 | -1.69E-46 |
| MS.gene05413 | MS.gene08264 | 0.822417 | 2.40E-53 | -1.69E-46 |
| MS.gene05413 | MS.gene09574 | 0.840159 | 1.03E-57 | -1.69E-46 |
| MS.gene05413 | MS.gene20482 | 0.819324 | 1.23E-52 | -1.69E-46 |
| MS.gene05413 | MS.gene20556 | 0.808719 | 2.70E-50 | -1.69E-46 |
| MS.gene05413 | MS.gene21665 | 0.829486 | 5.01E-55 | -1.69E-46 |
| MS.gene05413 | MS.gene22504 | 0.811409 | 7.10E-51 | -1.69E-46 |
| MS.gene05413 | MS.gene22505 | 0.806235 | 9.08E-50 | -1.69E-46 |
| MS.gene05413 | MS.gene22764 | 0.803287 | 3.75E-49 | -1.69E-46 |
| MS.gene05413 | MS.gene24098 | 0.80822 | 3.45E-50 | -1.69E-46 |
| MS.gene05413 | MS.gene24742 | 0.800391 | 1.47E-48 | -1.69E-46 |
| MS.gene05413 | MS.gene25567 | 0.808088 | 3.68E-50 | -1.69E-46 |
| MS.gene05413 | MS.gene25568 | 0.820215 | 7.71E-53 | -1.69E-46 |
| MS.gene05413 | MS.gene25693 | 0.803256 | 3.80E-49 | -1.69E-46 |
| MS.gene05413 | MS.gene27094 | 0.805987 | 1.02E-49 | -1.69E-46 |
| MS.gene05413 | MS.gene27100 | 0.803475 | 3.43E-49 | -1.69E-46 |
| MS.gene05413 | MS.gene28113 | 0.854889 | 9.11E-62 | -1.69E-46 |
| MS.gene05413 | MS.gene28939 | 0.810631 | 1.05E-50 | -1.69E-46 |
| MS.gene05413 | MS.gene33198 | 0.810846 | 9.41E-51 | -1.69E-46 |
| MS.gene05413 | MS.gene34874 | 0.826955 | 2.04E-54 | -1.69E-46 |
| MS.gene05413 | MS.gene35701 | 0.801587 | 8.39E-49 | -1.69E-46 |
| MS.gene05413 | MS.gene36864 | 0.835069 | 2.08E-56 | -1.69E-46 |
| MS.gene05413 | MS.gene36874 | 0.803133 | 4.03E-49 | -1.69E-46 |
| MS.gene05413 | MS.gene36952 | 0.805586 | 1.24E-49 | -1.69E-46 |
| MS.gene05413 | MS.gene38760 | 0.843421 | 1.42E-58 | -1.69E-46 |
| MS.gene05413 | MS.gene38799 | 0.802737 | 4.87E-49 | -1.69E-46 |
| MS.gene05413 | MS.gene39361 | 0.809475 | 1.86E-50 | -1.69E-46 |
| MS.gene05413 | MS.gene39679 | 0.803223 | 3.86E-49 | -1.69E-46 |
| MS.gene05413 | MS.gene41713 | 0.807008 | 6.23E-50 | -1.69E-46 |
| MS.gene05413 | MS.gene42798 | 0.820516 | 6.58E-53 | -1.69E-46 |
| MS.gene05413 | MS.gene43589 | 0.801723 | 7.87E-49 | -1.69E-46 |
| MS.gene05413 | MS.gene44521 | 0.833894 | 4.10E-56 | -1.69E-46 |
| MS.gene05413 | MS.gene44666 | 0.809925 | 1.49E-50 | -1.69E-46 |
| MS.gene05413 | MS.gene44677 | 0.806312 | 8.74E-50 | -1.69E-46 |
| MS.gene05413 | MS.gene47758 | 0.848095 | 7.62E-60 | -1.69E-46 |
| MS.gene05413 | MS.gene49050 | 0.811907 | 5.54E-51 | -1.69E-46 |
| MS.gene05413 | MS.gene49510 | 0.803489 | 3.40E-49 | -1.69E-46 |
| MS.gene05413 | MS.gene49850 | 0.814661 | 1.38E-51 | -1.69E-46 |
| MS.gene05413 | MS.gene51389 | 0.817789 | 2.75E-52 | -1.69E-46 |
| MS.gene05413 | MS.gene51540 | 0.804723 | 1.88E-49 | -1.69E-46 |
| MS.gene05413 | MS.gene53843 | 0.817746 | 2.81E-52 | -1.69E-46 |
| MS.gene05413 | MS.gene53848 | 0.801452 | 8.94E-49 | -1.69E-46 |
| MS.gene05413 | MS.gene53849 | 0.806095 | 9.72E-50 | -1.69E-46 |
| MS.gene05413 | MS.gene55270 | 0.812224 | 4.72E-51 | -1.69E-46 |
| MS.gene05413 | MS.gene56100 | 0.820666 | 6.08E-53 | -1.69E-46 |
| MS.gene05413 | MS.gene57561 | 0.815728 | 7.97E-52 | -1.69E-46 |
| MS.gene05413 | MS.gene58141 | 0.804052 | 2.60E-49 | -1.69E-46 |
| MS.gene05413 | MS.gene58480 | 0.801979 | 6.97E-49 | -1.69E-46 |
| MS.gene05413 | MS.gene59857 | 0.807006 | 6.24E-50 | -1.69E-46 |
| MS.gene05413 | MS.gene60286 | 0.800228 | 1.59E-48 | -1.69E-46 |
| MS.gene05413 | MS.gene65641 | 0.809594 | 1.75E-50 | -1.69E-46 |
| MS.gene05413 | MS.gene66157 | 0.828161 | 1.05E-54 | -1.69E-46 |
| MS.gene05413 | MS.gene66702 | 0.864738 | 9.80E-65 | -1.69E-46 |
| MS.gene05413 | MS.gene66922 | 0.822444 | 2.36E-53 | -1.69E-46 |
| MS.gene05413 | MS.gene71006 | 0.809441 | 1.89E-50 | -1.69E-46 |
| MS.gene05413 | MS.gene71558 | 0.827132 | 1.85E-54 | -1.69E-46 |
| MS.gene05413 | MS.gene72477 | 0.802364 | 5.81E-49 | -1.69E-46 |
| MS.gene05413 | MS.gene73211 | 0.817442 | 3.29E-52 | -1.69E-46 |
| MS.gene05413 | MS.gene73574 | 0.943672 | 7.88E-103 | -1.69E-46 |
| MS.gene05413 | MS.gene75346 | 0.816374 | 5.72E-52 | -1.69E-46 |
| MS.gene05413 | MS.gene78129 | 0.838155 | 3.40E-57 | -1.69E-46 |
| MS.gene05413 | MS.gene81581 | 0.807037 | 6.15E-50 | -1.69E-46 |
| MS.gene05413 | MS.gene81586 | 0.811034 | 8.57E-51 | -1.69E-46 |
| MS.gene05413 | MS.gene81589 | 0.845683 | 3.48E-59 | -1.69E-46 |
| MS.gene05413 | MS.gene82533 | 0.813789 | 2.14E-51 | -1.69E-46 |
| MS.gene05413 | MS.gene82769 | 0.808344 | 3.24E-50 | -1.69E-46 |
| MS.gene05413 | MS.gene85703 | 0.800451 | 1.43E-48 | -1.69E-46 |
| MS.gene05413 | MS.gene85860 | 0.804417 | 2.18E-49 | -1.69E-46 |
| MS.gene05413 | MS.gene85919 | 0.841906 | 3.58E-58 | -1.69E-46 |
| MS.gene05413 | MS.gene86055 | 0.81229 | 4.57E-51 | -1.69E-46 |
| MS.gene05413 | MS.gene86331 | 0.822508 | 2.28E-53 | -1.69E-46 |
| MS.gene05413 | MS.gene87268 | 0.848455 | 6.06E-60 | -1.69E-46 |
| MS.gene05413 | MS.gene88577 | 0.821945 | 3.08E-53 | -1.69E-46 |
| MS.gene05413 | MS.gene90456 | 0.816893 | 4.37E-52 | -1.69E-46 |
| MS.gene05413 | MS.gene91098 | 0.813734 | 2.20E-51 | -1.69E-46 |
| MS.gene05413 | MS.gene91159 | 0.801969 | 7.01E-49 | -1.69E-46 |
| MS.gene05413 | MS.gene91509 | 0.80075 | 1.24E-48 | -1.69E-46 |
| MS.gene05413 | MS.gene91845 | 0.803743 | 3.01E-49 | -1.69E-46 |
| MS.gene05413 | MS.gene92106 | 0.823537 | 1.31E-53 | -1.69E-46 |
| MS.gene05413 | MS.gene92528 | 0.819959 | 8.83E-53 | -1.69E-46 |
| MS.gene05413 | MS.gene94277 | 0.800162 | 1.64E-48 | -1.69E-46 |
| MS.gene05413 | MS.gene95353 | -0.807562 | 4.76E-50 | -1.69E-46 |
| MS.gene05413 | MS.gene95383 | 0.811242 | 7.72E-51 | -1.69E-46 |
| MS.gene05413 | MS.gene95707 | 0.815362 | 9.61E-52 | -1.69E-46 |
| MS.gene05413 | MS.gene97706 | 0.822806 | 1.94E-53 | -1.69E-46 |
| MS.gene05413 | MS.gene98800 | 0.805239 | 1.47E-49 | -1.69E-46 |
| MS.gene05413 | MS.gene98808 | 0.823802 | 1.14E-53 | -1.69E-46 |
| MS.gene05413 | MS.gene98809 | 0.818771 | 1.65E-52 | -1.69E-46 |
| MS.gene05413 | MS.gene99854 | 0.803655 | 3.14E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05413.t1 | MTR_6g083200 | 93.662 | 142 | 8 | 1 | 1 | 141 | 1 | 142 | 7.05e-94 | 270 |
| MS.gene05413.t1 | MTR_6g083270 | 65.839 | 161 | 37 | 3 | 1 | 143 | 1 | 161 | 3.72e-67 | 210 |
| MS.gene05413.t1 | MTR_6g083310 | 63.462 | 156 | 43 | 3 | 1 | 142 | 1 | 156 | 8.07e-64 | 192 |
| MS.gene05413.t1 | MTR_6g083290 | 63.333 | 150 | 43 | 4 | 1 | 142 | 1 | 146 | 1.24e-57 | 182 |
| MS.gene05413.t1 | MTR_1g080800 | 52.143 | 140 | 59 | 3 | 10 | 143 | 9 | 146 | 1.07e-48 | 153 |
| MS.gene05413.t1 | MTR_1g080780 | 52.985 | 134 | 57 | 3 | 13 | 143 | 11 | 141 | 2.16e-48 | 152 |
| MS.gene05413.t1 | MTR_1g080820 | 51.449 | 138 | 59 | 3 | 10 | 141 | 9 | 144 | 1.25e-46 | 148 |
| MS.gene05413.t1 | MTR_1g080810 | 48.905 | 137 | 62 | 3 | 11 | 141 | 10 | 144 | 2.22e-44 | 142 |
| MS.gene05413.t1 | MTR_7g115220 | 52.101 | 119 | 52 | 2 | 27 | 142 | 69 | 185 | 2.17e-40 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05413.t1 | AT3G04720 | 48.780 | 123 | 58 | 2 | 23 | 142 | 72 | 192 | 3.83e-39 | 131 |
Find 32 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATCCTCATAAAATTAAA+TGG | 0.257556 | 6.1:-73209113 | MS.gene05413:CDS |
| TTGTCATGGCGTAGTGAATT+TGG | 0.312460 | 6.1:-73209039 | MS.gene05413:CDS |
| CAGGTGACAAACAAAGAAAA+TGG | 0.324037 | 6.1:-73208139 | MS.gene05413:CDS |
| AAGGTAACTTTGAGCATTCC+CGG | 0.379943 | 6.1:+73208018 | None:intergenic |
| GAATGCTCAAAGTTACCTTA+TGG | 0.411312 | 6.1:-73208014 | MS.gene05413:CDS |
| CCACAAACACCTTTGCCAAC+AGG | 0.421503 | 6.1:+73208997 | None:intergenic |
| AAATGGAACTTGAACACATC+TGG | 0.431997 | 6.1:-73209096 | MS.gene05413:CDS |
| TATTGATGTGTTTCAAAAGC+TGG | 0.434145 | 6.1:-73208053 | MS.gene05413:CDS |
| TTTCAAAAGCTGGATAGCTC+TGG | 0.449489 | 6.1:-73208043 | MS.gene05413:CDS |
| GATTATGAATTTGTGGATTG+TGG | 0.458700 | 6.1:-73207989 | MS.gene05413:CDS |
| TATGGTGGATTATGAATTTG+TGG | 0.478849 | 6.1:-73207996 | MS.gene05413:CDS |
| TGGTGTGTTCTGTGCAGCTC+AGG | 0.478988 | 6.1:-73209076 | MS.gene05413:CDS |
| TTCTGTGGACCTGTTGGCAA+AGG | 0.480910 | 6.1:-73209006 | MS.gene05413:CDS |
| CAAATTCATAATCCACCATA+AGG | 0.490614 | 6.1:+73207999 | None:intergenic |
| TTTGGCTGGACTGCCTTCTG+TGG | 0.508213 | 6.1:-73209021 | MS.gene05413:CDS |
| AGGTGACAAACAAAGAAAAT+GGG | 0.510288 | 6.1:-73208138 | MS.gene05413:CDS |
| CCTGTTGGCAAAGGTGTTTG+TGG | 0.529107 | 6.1:-73208997 | MS.gene05413:CDS |
| TGTTCTGTGCAGCTCAGGAT+GGG | 0.532727 | 6.1:-73209071 | MS.gene05413:CDS |
| AGCTGGATAGCTCTGGGACC+GGG | 0.539373 | 6.1:-73208036 | MS.gene05413:CDS |
| CATGGCGTAGTGAATTTGGC+TGG | 0.539611 | 6.1:-73209035 | MS.gene05413:CDS |
| ACTGCCTTCTGTGGACCTGT+TGG | 0.548588 | 6.1:-73209012 | MS.gene05413:CDS |
| AAGCTGGATAGCTCTGGGAC+CGG | 0.549261 | 6.1:-73208037 | MS.gene05413:CDS |
| GTGTTCTGTGCAGCTCAGGA+TGG | 0.554622 | 6.1:-73209072 | MS.gene05413:CDS |
| ATCTAACTCAAGCCCTCCGT+TGG | 0.561496 | 6.1:+73208075 | None:intergenic |
| TTCAAAAGCTGGATAGCTCT+GGG | 0.561619 | 6.1:-73208042 | MS.gene05413:CDS |
| TGCTCAAAGTTACCTTATGG+TGG | 0.566436 | 6.1:-73208011 | MS.gene05413:CDS |
| TTGATACATGCACCAACGGA+GGG | 0.588242 | 6.1:-73208087 | MS.gene05413:CDS |
| ATGGGAACAAATCATTGTCA+TGG | 0.598375 | 6.1:-73209053 | MS.gene05413:CDS |
| TTTGCCAACAGGTCCACAGA+AGG | 0.647196 | 6.1:+73209008 | None:intergenic |
| TCAAAGAGCTAACAACGTGA+AGG | 0.649689 | 6.1:-73209151 | MS.gene05413:CDS |
| GTTGATACATGCACCAACGG+AGG | 0.651216 | 6.1:-73208088 | MS.gene05413:CDS |
| ATTGTTGATACATGCACCAA+CGG | 0.654994 | 6.1:-73208091 | MS.gene05413:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTTTTTTTTTTTTTA+AGG | + | chr6.1:73208408-73208427 | None:intergenic | 0.0% |
| !! | AAAAAGTTATATATTTGTTT+GGG | - | chr6.1:73208872-73208891 | MS.gene05413:intron | 10.0% |
| !! | AATTTCAATATAAACAAATT+TGG | + | chr6.1:73208674-73208693 | None:intergenic | 10.0% |
| !! | AATTTACTTAAGATTTAAGA+CGG | + | chr6.1:73208349-73208368 | None:intergenic | 15.0% |
| !! | CAAAAAGTTATATATTTGTT+TGG | - | chr6.1:73208871-73208890 | MS.gene05413:intron | 15.0% |
| !! | TATTGTTTACTTCATATATA+TGG | - | chr6.1:73208973-73208992 | MS.gene05413:intron | 15.0% |
| !! | TTAGTTATTCCTAATAAATA+GGG | + | chr6.1:73208534-73208553 | None:intergenic | 15.0% |
| !! | TTATTAATCAATAAAGTTCT+AGG | + | chr6.1:73209009-73209028 | None:intergenic | 15.0% |
| !!! | AAAAAGCATTTTACATATTA+CGG | - | chr6.1:73208735-73208754 | MS.gene05413:intron | 15.0% |
| !!! | GCTTAAGTATTTTTTTTTTA+AGG | + | chr6.1:73208382-73208401 | None:intergenic | 15.0% |
| !! | AATAACTAACACTATTGAAT+TGG | - | chr6.1:73208545-73208564 | MS.gene05413:intron | 20.0% |
| !! | ACAATCCTCATAAAATTAAA+TGG | - | chr6.1:73208085-73208104 | MS.gene05413:CDS | 20.0% |
| !! | GTTAGTTATTCCTAATAAAT+AGG | + | chr6.1:73208535-73208554 | None:intergenic | 20.0% |
| !! | TAGTTATTCCTAATAAATAG+GGG | + | chr6.1:73208533-73208552 | None:intergenic | 20.0% |
| !! | TATATTTACAACATCAAACT+TGG | + | chr6.1:73208599-73208618 | None:intergenic | 20.0% |
| !!! | AAGTTCCATTTAATTTTATG+AGG | + | chr6.1:73208093-73208112 | None:intergenic | 20.0% |
| ! | CAATATAAACAAATTTGGCA+AGG | + | chr6.1:73208669-73208688 | None:intergenic | 25.0% |
| ! | CTATTGAATTGGATACTATA+AGG | - | chr6.1:73208556-73208575 | MS.gene05413:intron | 25.0% |
| ! | TGAGAGAATAAAACGATAAT+TGG | + | chr6.1:73208627-73208646 | None:intergenic | 25.0% |
| AGGTGACAAACAAAGAAAAT+GGG | - | chr6.1:73209060-73209079 | MS.gene05413:CDS | 30.0% | |
| ATTCCTAATAAATAGGGGAT+CGG | + | chr6.1:73208528-73208547 | None:intergenic | 30.0% | |
| CAAATTCATAATCCACCATA+AGG | + | chr6.1:73209202-73209221 | None:intergenic | 30.0% | |
| CAACATCAAACTTGGTAAAT+TGG | + | chr6.1:73208591-73208610 | None:intergenic | 30.0% | |
| TATTGATGTGTTTCAAAAGC+TGG | - | chr6.1:73209145-73209164 | MS.gene05413:CDS | 30.0% | |
| ! | AGCTGGTCTAATTAGAAAAT+TGG | - | chr6.1:73208291-73208310 | MS.gene05413:intron | 30.0% |
| ! | GATTATGAATTTGTGGATTG+TGG | - | chr6.1:73209209-73209228 | MS.gene05413:CDS | 30.0% |
| !! | ATCGTCTAATTTTGATCAAC+CGG | - | chr6.1:73208446-73208465 | MS.gene05413:intron | 30.0% |
| !! | TATGGTGGATTATGAATTTG+TGG | - | chr6.1:73209202-73209221 | MS.gene05413:CDS | 30.0% |
| AAATGGAACTTGAACACATC+TGG | - | chr6.1:73208102-73208121 | MS.gene05413:CDS | 35.0% | |
| AGCAATCAACAATGACAATG+GGG | - | chr6.1:73208497-73208516 | MS.gene05413:intron | 35.0% | |
| ATGGGAACAAATCATTGTCA+TGG | - | chr6.1:73208145-73208164 | MS.gene05413:intron | 35.0% | |
| ATTGTTGATACATGCACCAA+CGG | - | chr6.1:73209107-73209126 | MS.gene05413:CDS | 35.0% | |
| CAGGTGACAAACAAAGAAAA+TGG | - | chr6.1:73209059-73209078 | MS.gene05413:CDS | 35.0% | |
| GAATGCTCAAAGTTACCTTA+TGG | - | chr6.1:73209184-73209203 | MS.gene05413:CDS | 35.0% | |
| GAGCAATCAACAATGACAAT+GGG | - | chr6.1:73208496-73208515 | MS.gene05413:intron | 35.0% | |
| TCTATTGTGCTTAAATCAGC+TGG | - | chr6.1:73208274-73208293 | MS.gene05413:intron | 35.0% | |
| TGAGCAATCAACAATGACAA+TGG | - | chr6.1:73208495-73208514 | MS.gene05413:intron | 35.0% | |
| TGAGCTAAAACAAGACAAGA+GGG | - | chr6.1:73208787-73208806 | MS.gene05413:intron | 35.0% | |
| TTCCTAATAAATAGGGGATC+GGG | + | chr6.1:73208527-73208546 | None:intergenic | 35.0% | |
| !! | ATTAGTCATGTACTGATTGC+TGG | - | chr6.1:73209029-73209048 | MS.gene05413:CDS | 35.0% |
| !! | GCAGCTTTTTCTATTGGATA+AGG | - | chr6.1:73207990-73208009 | MS.gene05413:CDS | 35.0% |
| AAGGTAACTTTGAGCATTCC+CGG | + | chr6.1:73209183-73209202 | None:intergenic | 40.0% | |
| ATCCCGATCCCCTATTTATT+AGG | - | chr6.1:73208522-73208541 | MS.gene05413:intron | 40.0% | |
| GTGAGCTAAAACAAGACAAG+AGG | - | chr6.1:73208786-73208805 | MS.gene05413:intron | 40.0% | |
| TCAAAGAGCTAACAACGTGA+AGG | - | chr6.1:73208047-73208066 | MS.gene05413:CDS | 40.0% | |
| TGCTCAAAGTTACCTTATGG+TGG | - | chr6.1:73209187-73209206 | MS.gene05413:CDS | 40.0% | |
| TTCAAAAGCTGGATAGCTCT+GGG | - | chr6.1:73209156-73209175 | MS.gene05413:CDS | 40.0% | |
| TTGTCATGGCGTAGTGAATT+TGG | - | chr6.1:73208159-73208178 | MS.gene05413:intron | 40.0% | |
| TTTCAAAAGCTGGATAGCTC+TGG | - | chr6.1:73209155-73209174 | MS.gene05413:CDS | 40.0% | |
| !! | GTCGAAGCAGCTTTTTCTAT+TGG | - | chr6.1:73207984-73208003 | MS.gene05413:CDS | 40.0% |
| TTGATACATGCACCAACGGA+GGG | - | chr6.1:73209111-73209130 | MS.gene05413:CDS | 45.0% | |
| !!! | TTAATATTTATTTTATTCTT+AGG | - | chr6.1:73208701-73208720 | MS.gene05413:intron | 5.0% |
| ACTGATTGCTGGTCGATTGC+AGG | - | chr6.1:73209040-73209059 | MS.gene05413:CDS | 50.0% | |
| ATCTAACTCAAGCCCTCCGT+TGG | + | chr6.1:73209126-73209145 | None:intergenic | 50.0% | |
| CATGGCGTAGTGAATTTGGC+TGG | - | chr6.1:73208163-73208182 | MS.gene05413:intron | 50.0% | |
| CCACAAACACCTTTGCCAAC+AGG | + | chr6.1:73208204-73208223 | None:intergenic | 50.0% | |
| GTTGATACATGCACCAACGG+AGG | - | chr6.1:73209110-73209129 | MS.gene05413:CDS | 50.0% | |
| GTTGTTTGTGACTGCGTGAC+CGG | + | chr6.1:73208468-73208487 | None:intergenic | 50.0% | |
| TGTTCTGTGCAGCTCAGGAT+GGG | - | chr6.1:73208127-73208146 | MS.gene05413:CDS | 50.0% | |
| TTCTGTGGACCTGTTGGCAA+AGG | - | chr6.1:73208192-73208211 | MS.gene05413:intron | 50.0% | |
| TTTGCCAACAGGTCCACAGA+AGG | + | chr6.1:73208193-73208212 | None:intergenic | 50.0% | |
| !! | CCTGTTGGCAAAGGTGTTTG+TGG | - | chr6.1:73208201-73208220 | MS.gene05413:intron | 50.0% |
| ACTGCCTTCTGTGGACCTGT+TGG | - | chr6.1:73208186-73208205 | MS.gene05413:intron | 55.0% | |
| GTGTTCTGTGCAGCTCAGGA+TGG | - | chr6.1:73208126-73208145 | MS.gene05413:CDS | 55.0% | |
| TGGTGTGTTCTGTGCAGCTC+AGG | - | chr6.1:73208122-73208141 | MS.gene05413:CDS | 55.0% | |
| TTTGGCTGGACTGCCTTCTG+TGG | - | chr6.1:73208177-73208196 | MS.gene05413:intron | 55.0% | |
| !! | AAGCTGGATAGCTCTGGGAC+CGG | - | chr6.1:73209161-73209180 | MS.gene05413:CDS | 55.0% |
| !! | AGCTGGATAGCTCTGGGACC+GGG | - | chr6.1:73209162-73209181 | MS.gene05413:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 73207982 | 73209238 | 73207982 | ID=MS.gene05413 |
| chr6.1 | mRNA | 73207982 | 73209238 | 73207982 | ID=MS.gene05413.t1;Parent=MS.gene05413 |
| chr6.1 | exon | 73208984 | 73209238 | 73208984 | ID=MS.gene05413.t1.exon1;Parent=MS.gene05413.t1 |
| chr6.1 | CDS | 73208984 | 73209238 | 73208984 | ID=cds.MS.gene05413.t1;Parent=MS.gene05413.t1 |
| chr6.1 | exon | 73207982 | 73208158 | 73207982 | ID=MS.gene05413.t1.exon2;Parent=MS.gene05413.t1 |
| chr6.1 | CDS | 73207982 | 73208158 | 73207982 | ID=cds.MS.gene05413.t1;Parent=MS.gene05413.t1 |
| Gene Sequence |
| Protein sequence |
