Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072912.t1 | XP_003603420.1 | 96.1 | 330 | 7 | 1 | 1 | 324 | 1 | 330 | 1.50E-126 | 462.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072912.t1 | Q8H0V5 | 58.7 | 167 | 69 | 0 | 151 | 317 | 185 | 351 | 1.7e-46 | 188.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072912.t1 | G7JB43 | 96.1 | 330 | 7 | 1 | 1 | 324 | 1 | 330 | 1.1e-126 | 462.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene072912.t1 | TF | HB-other |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049284 | MS.gene072912 | 0.806106 | 9.66E-50 | -1.69E-46 |
| MS.gene050404 | MS.gene072912 | 0.837608 | 4.70E-57 | -1.69E-46 |
| MS.gene050406 | MS.gene072912 | 0.80308 | 4.13E-49 | -1.69E-46 |
| MS.gene050529 | MS.gene072912 | 0.812181 | 4.82E-51 | -1.69E-46 |
| MS.gene050812 | MS.gene072912 | 0.815729 | 7.96E-52 | -1.69E-46 |
| MS.gene051171 | MS.gene072912 | 0.828759 | 7.52E-55 | -1.69E-46 |
| MS.gene051242 | MS.gene072912 | 0.831928 | 1.26E-55 | -1.69E-46 |
| MS.gene051244 | MS.gene072912 | 0.814296 | 1.66E-51 | -1.69E-46 |
| MS.gene053330 | MS.gene072912 | 0.819611 | 1.06E-52 | -1.69E-46 |
| MS.gene053907 | MS.gene072912 | 0.802969 | 4.36E-49 | -1.69E-46 |
| MS.gene053971 | MS.gene072912 | 0.800882 | 1.17E-48 | -1.69E-46 |
| MS.gene055412 | MS.gene072912 | 0.811362 | 7.27E-51 | -1.69E-46 |
| MS.gene056633 | MS.gene072912 | 0.834407 | 3.05E-56 | -1.69E-46 |
| MS.gene056659 | MS.gene072912 | 0.809081 | 2.26E-50 | -1.69E-46 |
| MS.gene056664 | MS.gene072912 | 0.855778 | 5.02E-62 | -1.69E-46 |
| MS.gene056796 | MS.gene072912 | 0.826061 | 3.34E-54 | -1.69E-46 |
| MS.gene057124 | MS.gene072912 | 0.806712 | 7.20E-50 | -1.69E-46 |
| MS.gene058233 | MS.gene072912 | 0.876083 | 1.85E-68 | -1.69E-46 |
| MS.gene058276 | MS.gene072912 | 0.85696 | 2.26E-62 | -1.69E-46 |
| MS.gene058746 | MS.gene072912 | 0.853258 | 2.69E-61 | -1.69E-46 |
| MS.gene059692 | MS.gene072912 | 0.803031 | 4.23E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene072912 | 0.824089 | 9.75E-54 | -1.69E-46 |
| MS.gene060407 | MS.gene072912 | 0.819008 | 1.45E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072912.t1 | MTR_3g107530 | 94.242 | 330 | 13 | 1 | 1 | 324 | 1 | 330 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072912.t1 | AT5G11270 | 48.659 | 261 | 125 | 1 | 66 | 317 | 91 | 351 | 2.32e-66 | 212 |
Find 55 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCTCCGGGCGTAGTTTC+AGG | 0.263805 | 3.4:+93419130 | None:intergenic |
| GGTGATACTGCTGATGGTTT+AGG | 0.275225 | 3.4:+93419151 | None:intergenic |
| TTCTCGAAAGAGATTGAAAA+AGG | 0.338696 | 3.4:-93419014 | MS.gene072912:CDS |
| GATCATGCTCATGCAGAATC+TGG | 0.343580 | 3.4:-93419085 | MS.gene072912:CDS |
| TTCCTCTGACTGTGACTAAA+CGG | 0.395790 | 3.4:+93420864 | None:intergenic |
| TTCGCTGCAAAGAAGAGGAT+TGG | 0.420945 | 3.4:+93420840 | None:intergenic |
| GCTGATGGTTTAGGTTCATC+AGG | 0.425177 | 3.4:+93419160 | None:intergenic |
| TTCATGACATGCAACAGAAT+TGG | 0.427701 | 3.4:-93419039 | MS.gene072912:CDS |
| TTCTTTATGAAAAGAATCTC+CGG | 0.439788 | 3.4:+93419117 | None:intergenic |
| CGCGGAGAACAGTTATTAAG+TGG | 0.452000 | 3.4:-93417913 | MS.gene072912:CDS |
| TCGCTGCAAAGAAGAGGATT+GGG | 0.456309 | 3.4:+93420841 | None:intergenic |
| TTCTGTTGCATGTCATGAAT+AGG | 0.457484 | 3.4:+93419043 | None:intergenic |
| TTGGCTAGAGCATTGAAAAC+TGG | 0.460688 | 3.4:-93420281 | MS.gene072912:CDS |
| ATAGGTAAGTTAGACTTCTT+CGG | 0.466152 | 3.4:+93419061 | None:intergenic |
| TCCTCTGACTGTGACTAAAC+GGG | 0.466238 | 3.4:+93420865 | None:intergenic |
| CGTGAGTTGGAAGGTGTGTT+GGG | 0.479759 | 3.4:-93420428 | MS.gene072912:CDS |
| TCATTAGCAGACTGCTGGTA+AGG | 0.483094 | 3.4:+93417845 | None:intergenic |
| TTGTTTCATTAGCAGACTGC+TGG | 0.483884 | 3.4:+93417840 | None:intergenic |
| TGTTTGAAAAGCAACTCAAA+TGG | 0.492775 | 3.4:+93420545 | None:intergenic |
| ATTCGCTGAAGCTTAGAACT+TGG | 0.492933 | 3.4:-93420316 | MS.gene072912:CDS |
| AAAGGCTTACACTTAGTTTG+CGG | 0.505407 | 3.4:+93420255 | None:intergenic |
| TGCTTTGTTAGAACGTGAGT+TGG | 0.513640 | 3.4:-93420441 | MS.gene072912:CDS |
| CTCAGCATCAGAAGACTTGG+TGG | 0.517452 | 3.4:+93419193 | None:intergenic |
| AGCTCTATCAAGACAGAGCT+CGG | 0.525713 | 3.4:+93419243 | None:intergenic |
| AGAGCGAGAAGGAAGAGTGA+AGG | 0.528288 | 3.4:+93420802 | None:intergenic |
| ACGTGAGTTGGAAGGTGTGT+TGG | 0.531369 | 3.4:-93420429 | MS.gene072912:CDS |
| AGAGTGAAGGAGAAGAGAAG+AGG | 0.540225 | 3.4:+93420815 | None:intergenic |
| AGACAAACGTGCCGAGGAGG+GGG | 0.542683 | 3.4:-93417885 | MS.gene072912:CDS |
| GTTTCAGGTGATACTGCTGA+TGG | 0.555775 | 3.4:+93419145 | None:intergenic |
| AGGCTCAGCATCAGAAGACT+TGG | 0.557597 | 3.4:+93419190 | None:intergenic |
| CGGTGACAATTGAAGAGTAG+AGG | 0.560168 | 3.4:+93420774 | None:intergenic |
| TGGTAAGGAAGACGATGCTC+TGG | 0.560826 | 3.4:+93417860 | None:intergenic |
| AAATTGACTCATGTTACAGA+GGG | 0.567201 | 3.4:-93420584 | MS.gene072912:CDS |
| AACTTGGCAATTGAATACAT+TGG | 0.575518 | 3.4:-93420300 | MS.gene072912:CDS |
| AGCATCAGAAGACTTGGTGG+AGG | 0.576518 | 3.4:+93419196 | None:intergenic |
| TAGGTTCATCAGGAATCGAT+AGG | 0.584575 | 3.4:+93419170 | None:intergenic |
| TCTTTATGAAAAGAATCTCC+GGG | 0.584998 | 3.4:+93419118 | None:intergenic |
| GTATCACCTGAAACTACGCC+CGG | 0.589871 | 3.4:-93419136 | MS.gene072912:CDS |
| GAAGACAAACGTGCCGAGGA+GGG | 0.595141 | 3.4:-93417887 | MS.gene072912:CDS |
| AAAGGCTCAACTTGACACGC+TGG | 0.611700 | 3.4:-93418996 | MS.gene072912:CDS |
| TTGTTAGAACGTGAGTTGGA+AGG | 0.619119 | 3.4:-93420437 | MS.gene072912:CDS |
| TGAAGACAAACGTGCCGAGG+AGG | 0.619168 | 3.4:-93417888 | MS.gene072912:CDS |
| AAGACAAACGTGCCGAGGAG+GGG | 0.620622 | 3.4:-93417886 | MS.gene072912:CDS |
| TGCATGTTTCAAACATTCCG+CGG | 0.630435 | 3.4:-93417931 | MS.gene072912:CDS |
| ACCCGTTTAGTCACAGTCAG+AGG | 0.634786 | 3.4:-93420866 | MS.gene072912:CDS |
| AAAATTGACTCATGTTACAG+AGG | 0.638213 | 3.4:-93420585 | MS.gene072912:CDS |
| GCATCAGAAGACTTGGTGGA+GGG | 0.649310 | 3.4:+93419197 | None:intergenic |
| GTTTGAAGACAAACGTGCCG+AGG | 0.651860 | 3.4:-93417891 | MS.gene072912:CDS |
| TGATAAACACTGATTCGCGA+CGG | 0.673675 | 3.4:+93420892 | None:intergenic |
| TGTTACAGAGGGGAATGACG+AGG | 0.686418 | 3.4:-93420573 | MS.gene072912:CDS |
| TACAGAGGGGAATGACGAGG+AGG | 0.700089 | 3.4:-93420570 | MS.gene072912:CDS |
| ACAGATATCAGCGAAACACA+AGG | 0.708447 | 3.4:-93420380 | MS.gene072912:CDS |
| CACTTAATAACTGTTCTCCG+CGG | 0.713242 | 3.4:+93417914 | None:intergenic |
| GAGTTTACATGAGATCAAAG+CGG | 0.731573 | 3.4:-93418970 | MS.gene072912:CDS |
| AATTGACTCATGTTACAGAG+GGG | 0.739510 | 3.4:-93420583 | MS.gene072912:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGCATAGAATAATAAATT+AGG | + | chr3.4:93418095-93418114 | None:intergenic | 15.0% |
| !! | AATTAAACTCAAAACAAATT+AGG | + | chr3.4:93418520-93418539 | None:intergenic | 15.0% |
| !! | AATTTAATAGTGAGATTTAT+TGG | + | chr3.4:93420484-93420503 | None:intergenic | 15.0% |
| !! | CTAAAAATACAAAATTCAAA+AGG | + | chr3.4:93418497-93418516 | None:intergenic | 15.0% |
| !! | AAACTTGTGATATTTAAGTA+TGG | + | chr3.4:93419807-93419826 | None:intergenic | 20.0% |
| !! | ACATTTGATATATTTAGCAT+CGG | - | chr3.4:93420290-93420309 | MS.gene072912:CDS | 20.0% |
| !! | GAATAAAAAGTTTAAGCAAA+TGG | + | chr3.4:93418855-93418874 | None:intergenic | 20.0% |
| !! | TATGAATCATTGAATTGTAT+TGG | + | chr3.4:93418061-93418080 | None:intergenic | 20.0% |
| !! | TTAATTCATATATACAACGT+TGG | + | chr3.4:93418601-93418620 | None:intergenic | 20.0% |
| !! | TTCCAAAAAGAAAAACAATA+AGG | - | chr3.4:93417984-93418003 | MS.gene072912:intron | 20.0% |
| !! | TTTATATTAAGAATCTCAGA+TGG | - | chr3.4:93419259-93419278 | MS.gene072912:CDS | 20.0% |
| !!! | AACCTTATTGTTTTTCTTTT+TGG | + | chr3.4:93417989-93418008 | None:intergenic | 20.0% |
| !!! | AAGATTTTACTAGTTATGTA+TGG | + | chr3.4:93419904-93419923 | None:intergenic | 20.0% |
| !!! | CTTAAATATCACAAGTTTTA+TGG | - | chr3.4:93419809-93419828 | MS.gene072912:intron | 20.0% |
| ! | AAACTTGTGATATTGAAGTA+TGG | + | chr3.4:93419865-93419884 | None:intergenic | 25.0% |
| ! | AATAGAATATATGCACAAAG+AGG | + | chr3.4:93420598-93420617 | None:intergenic | 25.0% |
| ! | AATGATGTAGAAAAAAGTAG+TGG | - | chr3.4:93418378-93418397 | MS.gene072912:intron | 25.0% |
| ! | AATGTTAGTAGTTAGTTAGT+TGG | - | chr3.4:93418986-93419005 | MS.gene072912:CDS | 25.0% |
| ! | AATTGTATTGGATTTGGATT+TGG | + | chr3.4:93418049-93418068 | None:intergenic | 25.0% |
| ! | ACATAACTTCTGATTTAAGA+GGG | + | chr3.4:93419991-93420010 | None:intergenic | 25.0% |
| ! | AGTTAACAAGTTGTGAAATA+AGG | + | chr3.4:93420720-93420739 | None:intergenic | 25.0% |
| ! | ATATATACAACGTTGGTATT+TGG | + | chr3.4:93418594-93418613 | None:intergenic | 25.0% |
| ! | ATGATATGAATAGGATTACT+TGG | - | chr3.4:93418698-93418717 | MS.gene072912:intron | 25.0% |
| ! | TAGTATATTTGCCTTTAATC+AGG | + | chr3.4:93419155-93419174 | None:intergenic | 25.0% |
| ! | TCATTGAATTGTATTGGATT+TGG | + | chr3.4:93418055-93418074 | None:intergenic | 25.0% |
| ! | TTCTTTATGAAAAGAATCTC+CGG | + | chr3.4:93419617-93419636 | None:intergenic | 25.0% |
| !! | CTAGTTGATATATTAAAGAG+TGG | - | chr3.4:93419172-93419191 | MS.gene072912:CDS | 25.0% |
| !! | CTTCAATATCACAAGTTTTA+TGG | - | chr3.4:93419867-93419886 | MS.gene072912:intron | 25.0% |
| !! | GTGACTTTTTAATCTAATGA+TGG | - | chr3.4:93420518-93420537 | MS.gene072912:CDS | 25.0% |
| !!! | ATTGTTTTTCTTTTTGGAAG+AGG | + | chr3.4:93417983-93418002 | None:intergenic | 25.0% |
| AAATGCAGATCATATCATAC+AGG | + | chr3.4:93418773-93418792 | None:intergenic | 30.0% | |
| AAATGGGGTAAATGTCATAT+AGG | - | chr3.4:93420265-93420284 | MS.gene072912:CDS | 30.0% | |
| AACTTGGCAATTGAATACAT+TGG | - | chr3.4:93418431-93418450 | MS.gene072912:intron | 30.0% | |
| AATGCTATAATATGCAGTGA+TGG | + | chr3.4:93420646-93420665 | None:intergenic | 30.0% | |
| AATGGGGTAAATGTCATATA+GGG | - | chr3.4:93420266-93420285 | MS.gene072912:CDS | 30.0% | |
| ATAGGTAAGTTAGACTTCTT+CGG | + | chr3.4:93419673-93419692 | None:intergenic | 30.0% | |
| ATCATACAGGTATTTCATGT+AGG | + | chr3.4:93418760-93418779 | None:intergenic | 30.0% | |
| ATGGCAAGTTTAACTATGTA+TGG | + | chr3.4:93419846-93419865 | None:intergenic | 30.0% | |
| ATTGGATTTGGATTTGGATT+TGG | + | chr3.4:93418043-93418062 | None:intergenic | 30.0% | |
| CCTTATCAATGAATGACAAA+AGG | + | chr3.4:93418929-93418948 | None:intergenic | 30.0% | |
| GACATAACTTCTGATTTAAG+AGG | + | chr3.4:93419992-93420011 | None:intergenic | 30.0% | |
| GTGTATCAGATGATATGAAT+AGG | - | chr3.4:93418689-93418708 | MS.gene072912:intron | 30.0% | |
| TCTTAAACACTTGTCTTGTA+TGG | + | chr3.4:93418804-93418823 | None:intergenic | 30.0% | |
| TCTTTATGAAAAGAATCTCC+GGG | + | chr3.4:93419616-93419635 | None:intergenic | 30.0% | |
| TGATGCTTGTATTAGTATTC+TGG | - | chr3.4:93420030-93420049 | MS.gene072912:intron | 30.0% | |
| TGGACGACTTGAAAATAAAT+GGG | - | chr3.4:93420249-93420268 | MS.gene072912:intron | 30.0% | |
| TGTTTGAAAAGCAACTCAAA+TGG | + | chr3.4:93418189-93418208 | None:intergenic | 30.0% | |
| TTAACATGTATTGCAAGTCT+TGG | + | chr3.4:93420186-93420205 | None:intergenic | 30.0% | |
| TTAAGAAACCAAAATGCTTG+TGG | - | chr3.4:93418818-93418837 | MS.gene072912:intron | 30.0% | |
| TTATCTGCAACAAATTCGAA+AGG | + | chr3.4:93419456-93419475 | None:intergenic | 30.0% | |
| TTCTCGAAAGAGATTGAAAA+AGG | - | chr3.4:93419717-93419736 | MS.gene072912:intron | 30.0% | |
| ! | AAAATTGACTCATGTTACAG+AGG | - | chr3.4:93418146-93418165 | MS.gene072912:intron | 30.0% |
| ! | AAATTGACTCATGTTACAGA+GGG | - | chr3.4:93418147-93418166 | MS.gene072912:intron | 30.0% |
| ! | ATACATCCAAGTTGAAGTTA+AGG | + | chr3.4:93419229-93419248 | None:intergenic | 30.0% |
| ! | CCTTTTGTCATTCATTGATA+AGG | - | chr3.4:93418926-93418945 | MS.gene072912:intron | 30.0% |
| ! | TTTGGATTTGGATTTGGAAT+TGG | + | chr3.4:93418037-93418056 | None:intergenic | 30.0% |
| !! | AGTGAGATTTATTGGTTCAA+TGG | + | chr3.4:93420476-93420495 | None:intergenic | 30.0% |
| !!! | TTACTTTTTCTTGTCCCTAA+AGG | + | chr3.4:93419106-93419125 | None:intergenic | 30.0% |
| ACCTTATATGCTTCTTTGTG+CGG | - | chr3.4:93420393-93420412 | MS.gene072912:CDS | 35.0% | |
| AGCATACATGATGATACAAC+TGG | + | chr3.4:93420080-93420099 | None:intergenic | 35.0% | |
| AGGAGAAGGAAAAAGTAAAC+TGG | - | chr3.4:93418946-93418965 | MS.gene072912:intron | 35.0% | |
| AGTAGTTAGTTAGTTGGTCA+GGG | - | chr3.4:93418992-93419011 | MS.gene072912:CDS | 35.0% | |
| ATGGGGTAAATGTCATATAG+GGG | - | chr3.4:93420267-93420286 | MS.gene072912:CDS | 35.0% | |
| CAAACACCTTAACTTCAACT+TGG | - | chr3.4:93419220-93419239 | MS.gene072912:CDS | 35.0% | |
| CAATCCCTAATGTTAACTTC+CGG | - | chr3.4:93419412-93419431 | MS.gene072912:intron | 35.0% | |
| GAGTTTACATGAGATCAAAG+CGG | - | chr3.4:93419761-93419780 | MS.gene072912:intron | 35.0% | |
| GCATACATGATGATACAACT+GGG | + | chr3.4:93420079-93420098 | None:intergenic | 35.0% | |
| GGACGACTTGAAAATAAATG+GGG | - | chr3.4:93420250-93420269 | MS.gene072912:intron | 35.0% | |
| GGTGTTTGCAAGCAAATTAA+CGG | + | chr3.4:93419208-93419227 | None:intergenic | 35.0% | |
| GTCATTCATTGATAAGGAGA+AGG | - | chr3.4:93418932-93418951 | MS.gene072912:intron | 35.0% | |
| GTGGACGACTTGAAAATAAA+TGG | - | chr3.4:93420248-93420267 | MS.gene072912:intron | 35.0% | |
| TAGTAGTTAGTTAGTTGGTC+AGG | - | chr3.4:93418991-93419010 | MS.gene072912:CDS | 35.0% | |
| TCATCTGATACACTTAGTTG+TGG | + | chr3.4:93418682-93418701 | None:intergenic | 35.0% | |
| TTCATGACATGCAACAGAAT+TGG | - | chr3.4:93419692-93419711 | MS.gene072912:intron | 35.0% | |
| TTCTGTTGCATGTCATGAAT+AGG | + | chr3.4:93419691-93419710 | None:intergenic | 35.0% | |
| ! | AAAGGCTTACACTTAGTTTG+CGG | + | chr3.4:93418479-93418498 | None:intergenic | 35.0% |
| ! | AATTGACTCATGTTACAGAG+GGG | - | chr3.4:93418148-93418167 | MS.gene072912:intron | 35.0% |
| ! | ACTGTTTTCCACAAGCATTT+TGG | + | chr3.4:93418829-93418848 | None:intergenic | 35.0% |
| ! | ATGGCAAGTTTAACTTACAG+TGG | + | chr3.4:93419788-93419807 | None:intergenic | 35.0% |
| ! | CAAAGAAGCATATAAGGTGA+TGG | + | chr3.4:93420391-93420410 | None:intergenic | 35.0% |
| ! | TACTTGGTTTGAGTATGAAG+AGG | - | chr3.4:93418714-93418733 | MS.gene072912:intron | 35.0% |
| ! | TGGCAAGTTTAACTTACAGT+GGG | + | chr3.4:93419787-93419806 | None:intergenic | 35.0% |
| !! | GAGATTTATTGGTTCAATGG+TGG | + | chr3.4:93420473-93420492 | None:intergenic | 35.0% |
| !! | GTTTTTCTTTTTGGAAGAGG+CGG | + | chr3.4:93417980-93417999 | None:intergenic | 35.0% |
| !! | TACACTCCATTTTTCTAGTC+CGG | - | chr3.4:93419957-93419976 | MS.gene072912:intron | 35.0% |
| AAACAGGAAATGCTAGTAGG+AGG | - | chr3.4:93419016-93419035 | MS.gene072912:CDS | 40.0% | |
| AAAGGAGTAGTGTAGTGGTT+TGG | + | chr3.4:93419088-93419107 | None:intergenic | 40.0% | |
| AAAGTGACAAGCATGTGTCT+TGG | - | chr3.4:93420667-93420686 | MS.gene072912:intron | 40.0% | |
| AACAGGAAATGCTAGTAGGA+GGG | - | chr3.4:93419017-93419036 | MS.gene072912:CDS | 40.0% | |
| AACCACTACACTACTCCTTT+AGG | - | chr3.4:93419088-93419107 | MS.gene072912:CDS | 40.0% | |
| AATGACAAAAGGCCAAGTCA+AGG | + | chr3.4:93418918-93418937 | None:intergenic | 40.0% | |
| ACAGATATCAGCGAAACACA+AGG | - | chr3.4:93418351-93418370 | MS.gene072912:intron | 40.0% | |
| ACCACTACACTACTCCTTTA+GGG | - | chr3.4:93419089-93419108 | MS.gene072912:CDS | 40.0% | |
| ATAAAGCGAGAAGGAAAGAG+AGG | - | chr3.4:93419334-93419353 | MS.gene072912:intron | 40.0% | |
| ATTCGCTGAAGCTTAGAACT+TGG | - | chr3.4:93418415-93418434 | MS.gene072912:intron | 40.0% | |
| ATTTAAGAGGGAATTGCTGC+CGG | + | chr3.4:93419979-93419998 | None:intergenic | 40.0% | |
| CACTTAATAACTGTTCTCCG+CGG | + | chr3.4:93420820-93420839 | None:intergenic | 40.0% | |
| CATTGTAGTTCAAGACAGAC+AGG | + | chr3.4:93420755-93420774 | None:intergenic | 40.0% | |
| CTCCTGCTTAGAACTTCTTT+GGG | - | chr3.4:93419054-93419073 | MS.gene072912:CDS | 40.0% | |
| GAGTCCGGAAGTTAACATTA+GGG | + | chr3.4:93419419-93419438 | None:intergenic | 40.0% | |
| GGAAAACAGGAAATGCTAGT+AGG | - | chr3.4:93419013-93419032 | MS.gene072912:CDS | 40.0% | |
| GTAAACTTGATAGATCAGCC+AGG | - | chr3.4:93419122-93419141 | MS.gene072912:CDS | 40.0% | |
| GTAGAAAAAAGTAGTGGCGA+TGG | - | chr3.4:93418384-93418403 | MS.gene072912:intron | 40.0% | |
| GTGAAACTGAGAAATGAGTC+CGG | + | chr3.4:93419434-93419453 | None:intergenic | 40.0% | |
| GTTCATGTGATAAAGCGAGA+AGG | - | chr3.4:93419325-93419344 | MS.gene072912:intron | 40.0% | |
| TAAAGCGAGAAGGAAAGAGA+GGG | - | chr3.4:93419335-93419354 | MS.gene072912:intron | 40.0% | |
| TAGGTTCATCAGGAATCGAT+AGG | + | chr3.4:93419564-93419583 | None:intergenic | 40.0% | |
| TAGTTCAAGACAGACAGGTA+AGG | + | chr3.4:93420750-93420769 | None:intergenic | 40.0% | |
| TCAAGCTAAGTGTCATATCG+TGG | - | chr3.4:93420229-93420248 | MS.gene072912:intron | 40.0% | |
| TCACTTGTGCACCATAGAAT+TGG | + | chr3.4:93420419-93420438 | None:intergenic | 40.0% | |
| TCCTGCTTAGAACTTCTTTG+GGG | - | chr3.4:93419055-93419074 | MS.gene072912:CDS | 40.0% | |
| TGAGTCCGGAAGTTAACATT+AGG | + | chr3.4:93419420-93419439 | None:intergenic | 40.0% | |
| TGCATGTTTCAAACATTCCG+CGG | - | chr3.4:93420800-93420819 | MS.gene072912:CDS | 40.0% | |
| TTCCTCTGACTGTGACTAAA+CGG | + | chr3.4:93417870-93417889 | None:intergenic | 40.0% | |
| TTGTTTCATTAGCAGACTGC+TGG | + | chr3.4:93420894-93420913 | None:intergenic | 40.0% | |
| ! | AAGGTGATGGTTGACATTGT+GGG | + | chr3.4:93420378-93420397 | None:intergenic | 40.0% |
| ! | ACGATATGACACTTAGCTTG+AGG | + | chr3.4:93420230-93420249 | None:intergenic | 40.0% |
| ! | AGTAGTGTAGTGGTTTGGAT+TGG | + | chr3.4:93419083-93419102 | None:intergenic | 40.0% |
| ! | CAAAGAGGCTTTGTCTAACA+TGG | + | chr3.4:93420583-93420602 | None:intergenic | 40.0% |
| ! | TAAGGTGATGGTTGACATTG+TGG | + | chr3.4:93420379-93420398 | None:intergenic | 40.0% |
| ! | TGCTTTGTTAGAACGTGAGT+TGG | - | chr3.4:93418290-93418309 | MS.gene072912:intron | 40.0% |
| ! | TTGTTAGAACGTGAGTTGGA+AGG | - | chr3.4:93418294-93418313 | MS.gene072912:intron | 40.0% |
| !! | AGATGGATTTTCCTTGCAAG+GGG | - | chr3.4:93419276-93419295 | MS.gene072912:intron | 40.0% |
| !! | CAGATGGATTTTCCTTGCAA+GGG | - | chr3.4:93419275-93419294 | MS.gene072912:intron | 40.0% |
| !! | TCAGATGGATTTTCCTTGCA+AGG | - | chr3.4:93419274-93419293 | MS.gene072912:intron | 40.0% |
| !! | TCTGATTTGCTTCCTTGACT+TGG | - | chr3.4:93418903-93418922 | MS.gene072912:intron | 40.0% |
| !! | TGATAAACACTGATTCGCGA+CGG | + | chr3.4:93417842-93417861 | None:intergenic | 40.0% |
| !! | TTGGCTAGAGCATTGAAAAC+TGG | - | chr3.4:93418450-93418469 | MS.gene072912:intron | 40.0% |
| ACTTGATAGATCAGCCAGGT+TGG | - | chr3.4:93419126-93419145 | MS.gene072912:CDS | 45.0% | |
| AGAGTGAAGGAGAAGAGAAG+AGG | + | chr3.4:93417919-93417938 | None:intergenic | 45.0% | |
| AGCTCTATCAAGACAGAGCT+CGG | + | chr3.4:93419491-93419510 | None:intergenic | 45.0% | |
| ATTGAGCAGACAACTAGCAC+AGG | + | chr3.4:93419396-93419415 | None:intergenic | 45.0% | |
| CCTCCTGCTTAGAACTTCTT+TGG | - | chr3.4:93419053-93419072 | MS.gene072912:CDS | 45.0% | |
| CGCGGAGAACAGTTATTAAG+TGG | - | chr3.4:93420818-93420837 | MS.gene072912:CDS | 45.0% | |
| CGGTGACAATTGAAGAGTAG+AGG | + | chr3.4:93417960-93417979 | None:intergenic | 45.0% | |
| CTTGATAGATCAGCCAGGTT+GGG | - | chr3.4:93419127-93419146 | MS.gene072912:CDS | 45.0% | |
| GATCATGCTCATGCAGAATC+TGG | - | chr3.4:93419646-93419665 | MS.gene072912:intron | 45.0% | |
| GGTGATACTGCTGATGGTTT+AGG | + | chr3.4:93419583-93419602 | None:intergenic | 45.0% | |
| GTTAGTTGGTCAGGGAAAAC+AGG | - | chr3.4:93419000-93419019 | MS.gene072912:CDS | 45.0% | |
| TCATTAGCAGACTGCTGGTA+AGG | + | chr3.4:93420889-93420908 | None:intergenic | 45.0% | |
| TCCCTAAAGGAGTAGTGTAG+TGG | + | chr3.4:93419093-93419112 | None:intergenic | 45.0% | |
| TCCTCTGACTGTGACTAAAC+GGG | + | chr3.4:93417869-93417888 | None:intergenic | 45.0% | |
| TCGCTGCAAAGAAGAGGATT+GGG | + | chr3.4:93417893-93417912 | None:intergenic | 45.0% | |
| TCTTTGTGCGGCCAATTCTA+TGG | - | chr3.4:93420405-93420424 | MS.gene072912:CDS | 45.0% | |
| TTCGCTGCAAAGAAGAGGAT+TGG | + | chr3.4:93417894-93417913 | None:intergenic | 45.0% | |
| TTGATAGATCAGCCAGGTTG+GGG | - | chr3.4:93419128-93419147 | MS.gene072912:CDS | 45.0% | |
| ! | AGGTTTTCGCTGCAAAGAAG+AGG | + | chr3.4:93417899-93417918 | None:intergenic | 45.0% |
| ! | GCCGCACAAAGAAGCATATA+AGG | + | chr3.4:93420397-93420416 | None:intergenic | 45.0% |
| ! | GCTGATGGTTTAGGTTCATC+AGG | + | chr3.4:93419574-93419593 | None:intergenic | 45.0% |
| ! | GTTTCAGGTGATACTGCTGA+TGG | + | chr3.4:93419589-93419608 | None:intergenic | 45.0% |
| ! | TTGCTGCCGGACTAGAAAAA+TGG | + | chr3.4:93419966-93419985 | None:intergenic | 45.0% |
| !! | AAGTTCTAAGCAGGAGGTCT+AGG | + | chr3.4:93419050-93419069 | None:intergenic | 45.0% |
| !! | ACCCCAAAGAAGTTCTAAGC+AGG | + | chr3.4:93419059-93419078 | None:intergenic | 45.0% |
| !! | AGTTCTAAGCAGGAGGTCTA+GGG | + | chr3.4:93419049-93419068 | None:intergenic | 45.0% |
| !! | CCAAAGAAGTTCTAAGCAGG+AGG | + | chr3.4:93419056-93419075 | None:intergenic | 45.0% |
| !!! | TAGAGGTTTTGAGAGCGAGA+AGG | + | chr3.4:93417943-93417962 | None:intergenic | 45.0% |
| AAAGGCTCAACTTGACACGC+TGG | - | chr3.4:93419735-93419754 | MS.gene072912:intron | 50.0% | |
| ACCCGTTTAGTCACAGTCAG+AGG | - | chr3.4:93417865-93417884 | MS.gene072912:CDS | 50.0% | |
| AGAGCGAGAAGGAAGAGTGA+AGG | + | chr3.4:93417932-93417951 | None:intergenic | 50.0% | |
| AGGCTCAGCATCAGAAGACT+TGG | + | chr3.4:93419544-93419563 | None:intergenic | 50.0% | |
| CTCAGCATCAGAAGACTTGG+TGG | + | chr3.4:93419541-93419560 | None:intergenic | 50.0% | |
| CTTTAATCAGGACCCCAACC+TGG | + | chr3.4:93419143-93419162 | None:intergenic | 50.0% | |
| GTATCACCTGAAACTACGCC+CGG | - | chr3.4:93419595-93419614 | MS.gene072912:intron | 50.0% | |
| GTGATGGTTGACATTGTGGG+AGG | + | chr3.4:93420375-93420394 | None:intergenic | 50.0% | |
| GTTTGAAGACAAACGTGCCG+AGG | - | chr3.4:93420840-93420859 | MS.gene072912:CDS | 50.0% | |
| TCAAACTTGCACCCCTTGCA+AGG | + | chr3.4:93419290-93419309 | None:intergenic | 50.0% | |
| TGGTAAGGAAGACGATGCTC+TGG | + | chr3.4:93420874-93420893 | None:intergenic | 50.0% | |
| TGTTACAGAGGGGAATGACG+AGG | - | chr3.4:93418158-93418177 | MS.gene072912:intron | 50.0% | |
| ! | ACGTGAGTTGGAAGGTGTGT+TGG | - | chr3.4:93418302-93418321 | MS.gene072912:intron | 50.0% |
| ! | CAGGTTGGGGTCCTGATTAA+AGG | - | chr3.4:93419141-93419160 | MS.gene072912:CDS | 50.0% |
| ! | CGTGAGTTGGAAGGTGTGTT+GGG | - | chr3.4:93418303-93418322 | MS.gene072912:intron | 50.0% |
| ! | TGCAAGGGGTGCAAGTTTGA+AGG | - | chr3.4:93419290-93419309 | MS.gene072912:intron | 50.0% |
| !! | AGCATCAGAAGACTTGGTGG+AGG | + | chr3.4:93419538-93419557 | None:intergenic | 50.0% |
| !! | GCATCAGAAGACTTGGTGGA+GGG | + | chr3.4:93419537-93419556 | None:intergenic | 50.0% |
| AAGACAAACGTGCCGAGGAG+GGG | - | chr3.4:93420845-93420864 | MS.gene072912:CDS | 55.0% | |
| GAAGACAAACGTGCCGAGGA+GGG | - | chr3.4:93420844-93420863 | MS.gene072912:CDS | 55.0% | |
| GAATCTCCGGGCGTAGTTTC+AGG | + | chr3.4:93419604-93419623 | None:intergenic | 55.0% | |
| TACAGAGGGGAATGACGAGG+AGG | - | chr3.4:93418161-93418180 | MS.gene072912:intron | 55.0% | |
| TGAAGACAAACGTGCCGAGG+AGG | - | chr3.4:93420843-93420862 | MS.gene072912:CDS | 55.0% | |
| AGACAAACGTGCCGAGGAGG+GGG | - | chr3.4:93420846-93420865 | MS.gene072912:CDS | 60.0% | |
| !! | ATGCTCTGGAACCCCCTCCT+CGG | + | chr3.4:93420860-93420879 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 93417835 | 93420918 | 93417835 | ID=MS.gene072912 |
| chr3.4 | mRNA | 93417835 | 93420918 | 93417835 | ID=MS.gene072912.t1;Parent=MS.gene072912 |
| chr3.4 | exon | 93420748 | 93420918 | 93420748 | ID=MS.gene072912.t1.exon1;Parent=MS.gene072912.t1 |
| chr3.4 | CDS | 93420748 | 93420918 | 93420748 | ID=cds.MS.gene072912.t1;Parent=MS.gene072912.t1 |
| chr3.4 | exon | 93420265 | 93420609 | 93420265 | ID=MS.gene072912.t1.exon2;Parent=MS.gene072912.t1 |
| chr3.4 | CDS | 93420265 | 93420609 | 93420265 | ID=cds.MS.gene072912.t1;Parent=MS.gene072912.t1 |
| chr3.4 | exon | 93418964 | 93419281 | 93418964 | ID=MS.gene072912.t1.exon3;Parent=MS.gene072912.t1 |
| chr3.4 | CDS | 93418964 | 93419281 | 93418964 | ID=cds.MS.gene072912.t1;Parent=MS.gene072912.t1 |
| chr3.4 | exon | 93417835 | 93417975 | 93417835 | ID=MS.gene072912.t1.exon4;Parent=MS.gene072912.t1 |
| chr3.4 | CDS | 93417835 | 93417975 | 93417835 | ID=cds.MS.gene072912.t1;Parent=MS.gene072912.t1 |
| Gene Sequence |
| Protein sequence |
