Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072977.t1 | XP_003603496.1 | 99.7 | 323 | 1 | 0 | 1 | 323 | 1 | 323 | 3.90E-151 | 544.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072977.t1 | P50346 | 93.6 | 280 | 18 | 0 | 1 | 280 | 1 | 280 | 1.8e-141 | 503.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072977.t1 | G7JC94 | 99.7 | 323 | 1 | 0 | 1 | 323 | 1 | 323 | 2.8e-151 | 544.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene072977 | 0.874782 | 5.16E-68 | -1.69E-46 |
| MS.gene051984 | MS.gene072977 | 0.818075 | 2.37E-52 | -1.69E-46 |
| MS.gene052664 | MS.gene072977 | 0.808032 | 3.78E-50 | -1.69E-46 |
| MS.gene052666 | MS.gene072977 | 0.833351 | 5.61E-56 | -1.69E-46 |
| MS.gene057641 | MS.gene072977 | 0.81169 | 6.17E-51 | -1.69E-46 |
| MS.gene057643 | MS.gene072977 | 0.816595 | 5.10E-52 | -1.69E-46 |
| MS.gene060483 | MS.gene072977 | 0.866514 | 2.70E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072977.t1 | MTR_3g108280 | 99.690 | 323 | 1 | 0 | 1 | 323 | 1 | 323 | 0.0 | 644 |
| MS.gene072977.t1 | MTR_5g082180 | 91.641 | 323 | 27 | 0 | 1 | 323 | 1 | 323 | 0.0 | 559 |
| MS.gene072977.t1 | MTR_1g044130 | 100.000 | 81 | 0 | 0 | 243 | 323 | 1 | 81 | 9.86e-49 | 158 |
| MS.gene072977.t1 | MTR_7g022400 | 68.269 | 104 | 32 | 1 | 11 | 113 | 7 | 110 | 9.46e-42 | 143 |
| MS.gene072977.t1 | MTR_7g112750 | 67.089 | 79 | 25 | 1 | 11 | 88 | 7 | 85 | 8.95e-27 | 105 |
| MS.gene072977.t1 | MTR_3g074840 | 64.706 | 85 | 8 | 2 | 86 | 169 | 1 | 64 | 5.97e-22 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072977.t1 | AT2G40010 | 84.112 | 321 | 47 | 1 | 1 | 321 | 1 | 317 | 0.0 | 523 |
| MS.gene072977.t1 | AT3G09200 | 89.493 | 276 | 29 | 0 | 3 | 278 | 2 | 277 | 1.42e-180 | 501 |
| MS.gene072977.t1 | AT3G11250 | 88.406 | 276 | 32 | 0 | 3 | 278 | 2 | 277 | 1.07e-178 | 497 |
| MS.gene072977.t1 | AT3G09200 | 78.623 | 276 | 26 | 1 | 3 | 278 | 2 | 244 | 5.06e-150 | 423 |
| MS.gene072977.t1 | AT1G25260 | 22.685 | 216 | 146 | 4 | 10 | 214 | 16 | 221 | 4.31e-11 | 62.4 |
Find 100 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCCTTGGCAGCTGCAGC+AGG | 0.147360 | 3.4:-93996473 | None:intergenic |
| ATCTCAGACCTCTTTCTTCC+AGG | 0.252116 | 3.4:+93995841 | MS.gene072977:CDS |
| CAGCGTTGACAACAAGGATT+TGG | 0.257235 | 3.4:-93994328 | None:intergenic |
| GCCCCAGCTGCTGCTGCGTC+TGG | 0.268454 | 3.4:+93996443 | MS.gene072977:CDS |
| CATGGTCACTTCACTTTCAT+TGG | 0.278087 | 3.4:+93996173 | MS.gene072977:CDS |
| CACCAGACGCAGCAGCAGCT+GGG | 0.284716 | 3.4:-93996445 | None:intergenic |
| CCACCAGACGCAGCAGCAGC+TGG | 0.308640 | 3.4:-93996446 | None:intergenic |
| ATCGTAGTTCTGCTTCTTCT+CGG | 0.310851 | 3.4:-93994273 | None:intergenic |
| CACAGTACCCTTGTTAATCT+TGG | 0.311903 | 3.4:-93995947 | None:intergenic |
| TTGTAGCAAAGTTTGCTATT+GGG | 0.333543 | 3.4:+93996145 | MS.gene072977:CDS |
| CTTGTAGCAAAGTTTGCTAT+TGG | 0.351992 | 3.4:+93996144 | MS.gene072977:CDS |
| TCTTCATCAGACTCTTCTTC+AGG | 0.361468 | 3.4:-93996512 | None:intergenic |
| GCTGCATTGCTTGCCAAGTT+AGG | 0.382522 | 3.4:+93996027 | MS.gene072977:CDS |
| TCCTTAACCTTGTCTGCCTC+AGG | 0.389206 | 3.4:-93996291 | None:intergenic |
| GTTGAGAAAAGCATTGTTGC+CGG | 0.397292 | 3.4:-93994468 | None:intergenic |
| GTTCTGCTTCTTCTCGGCTT+TGG | 0.398033 | 3.4:-93994267 | None:intergenic |
| AGCTCCTGCTCGTGTTGGTT+TGG | 0.398892 | 3.4:+93995769 | MS.gene072977:CDS |
| CTCCTTGGCAGCTGCAGCAG+GGG | 0.398915 | 3.4:-93996471 | None:intergenic |
| TTCCTTCTTTGCCTCCTCCT+TGG | 0.403009 | 3.4:-93996486 | None:intergenic |
| AAAAGCAAGAACGTTCTTGT+AGG | 0.409408 | 3.4:-93996244 | None:intergenic |
| GGAGGAACAACGACATCAAT+TGG | 0.410263 | 3.4:-93995797 | None:intergenic |
| TGCCCCTGCTGCAGCTGCCA+AGG | 0.415195 | 3.4:+93996469 | MS.gene072977:CDS |
| TACCCTTGTTAATCTTGGTT+GGG | 0.415505 | 3.4:-93995942 | None:intergenic |
| CCTCCTTGGCAGCTGCAGCA+GGG | 0.416133 | 3.4:-93996472 | None:intergenic |
| ACAGCTACAGCAAACTTACT+TGG | 0.421114 | 3.4:-93996416 | None:intergenic |
| GACATTGGTTTCGGTCTGTT+TGG | 0.422303 | 3.4:+93996533 | MS.gene072977:CDS |
| TCTGATGAAGACATTGGTTT+CGG | 0.427250 | 3.4:+93996524 | MS.gene072977:CDS |
| CCAGCTGCTGCTGCGTCTGG+TGG | 0.429030 | 3.4:+93996446 | MS.gene072977:CDS |
| GGGTCGAGCCCTGTGTTGCC+TGG | 0.431244 | 3.4:-93995818 | None:intergenic |
| CCTTTCTTAATGAGTTCCAC+AGG | 0.432079 | 3.4:-93995982 | None:intergenic |
| TGCCTCAGGGAAAGAATATT+CGG | 0.435165 | 3.4:-93996277 | None:intergenic |
| TGGTGACTCCGTTGTTCTCA+TGG | 0.440885 | 3.4:+93994397 | MS.gene072977:CDS |
| TCAGTGAGGTCAAGAACCTC+AGG | 0.450763 | 3.4:-93996114 | None:intergenic |
| GACCACAAGCCCGTATGAAA+AGG | 0.451799 | 3.4:-93996058 | None:intergenic |
| AGCGTTGACAACAAGGATTT+GGG | 0.451933 | 3.4:-93994327 | None:intergenic |
| AGAAAACTAACGACAAGAAG+AGG | 0.456056 | 3.4:-93994497 | None:intergenic |
| TGCTGCAGCTGCCAAGGAGG+AGG | 0.457641 | 3.4:+93996475 | MS.gene072977:CDS |
| CCCTGAGGCAGACAAGGTTA+AGG | 0.463407 | 3.4:+93996290 | MS.gene072977:CDS |
| TTTCACTAAAGGTGACTTGA+AGG | 0.469610 | 3.4:+93995413 | MS.gene072977:CDS |
| ATTGATGTCGTTGTTCCTCC+AGG | 0.473267 | 3.4:+93995800 | MS.gene072977:CDS |
| TCAGCTACAGAACATTCGTC+AGG | 0.474511 | 3.4:+93994367 | MS.gene072977:CDS |
| TGCCAAGGAGGAGGCAAAGA+AGG | 0.475094 | 3.4:+93996484 | MS.gene072977:CDS |
| TGTAGCAAAGTTTGCTATTG+GGG | 0.476436 | 3.4:+93996146 | MS.gene072977:CDS |
| GAGGAGCAGCGGCAAGTGTT+GGG | 0.477710 | 3.4:-93996206 | None:intergenic |
| TGAGGAGCAGCGGCAAGTGT+TGG | 0.489867 | 3.4:-93996207 | None:intergenic |
| ACCAGACGCAGCAGCAGCTG+GGG | 0.494428 | 3.4:-93996444 | None:intergenic |
| GTTTGCTATTGGGGTTTCCA+TGG | 0.495280 | 3.4:+93996155 | MS.gene072977:CDS |
| GTCCTCTCTGTTTATGACAA+TGG | 0.495884 | 3.4:+93996078 | MS.gene072977:CDS |
| TGCTTGCCAAGTTAGGCATT+AGG | 0.501788 | 3.4:+93996034 | MS.gene072977:CDS |
| GGGTGTATTCATCGATAAGC+TGG | 0.506884 | 3.4:-93994307 | None:intergenic |
| GTACCCTTGTTAATCTTGGT+TGG | 0.507788 | 3.4:-93995943 | None:intergenic |
| GCAACCAAACCAACACGAGC+AGG | 0.521300 | 3.4:-93995773 | None:intergenic |
| CGTATGCACGCTGAGAAAAC+CGG | 0.521724 | 3.4:+93994449 | MS.gene072977:CDS |
| AAAGGGCCTAATGCCTAACT+TGG | 0.523198 | 3.4:-93996040 | None:intergenic |
| TTCTTTCCCTGAGGCAGACA+AGG | 0.529015 | 3.4:+93996284 | MS.gene072977:CDS |
| CCCTGCTGCAGCTGCCAAGG+AGG | 0.530721 | 3.4:+93996472 | MS.gene072977:CDS |
| TGCTTCTTCTCGGCTTTGGT+AGG | 0.531501 | 3.4:-93994263 | None:intergenic |
| ACCACAAGCCCGTATGAAAA+GGG | 0.531757 | 3.4:-93996057 | None:intergenic |
| GTTGGAGCTCCTGCTCGTGT+TGG | 0.532062 | 3.4:+93995764 | MS.gene072977:CDS |
| TAGGCATTGACGAACATATG+AGG | 0.532355 | 3.4:-93996225 | None:intergenic |
| TGGAAGAAAGAGGTCTGAGA+TGG | 0.537477 | 3.4:-93995839 | None:intergenic |
| GTGCTGAATCAGGGTAATGT+TGG | 0.549672 | 3.4:+93995384 | MS.gene072977:intron |
| TAACGACAAGAAGAGGGATA+AGG | 0.557262 | 3.4:-93994490 | None:intergenic |
| ATTAAGAAAGGAGACAAGGT+TGG | 0.560082 | 3.4:+93995994 | MS.gene072977:CDS |
| CCTGTGGAACTCATTAAGAA+AGG | 0.562398 | 3.4:+93995982 | MS.gene072977:CDS |
| GTTGTTCCTCCAGGCAACAC+AGG | 0.564540 | 3.4:+93995809 | MS.gene072977:CDS |
| CATCCCAACCAAGATTAACA+AGG | 0.566179 | 3.4:+93995939 | MS.gene072977:CDS |
| CAATAGCAAACTTTGCTACA+AGG | 0.567134 | 3.4:-93996143 | None:intergenic |
| GAAGAGTCTGATGAAGACAT+TGG | 0.571608 | 3.4:+93996518 | MS.gene072977:CDS |
| CTTTCTTAATGAGTTCCACA+GGG | 0.574196 | 3.4:-93995981 | None:intergenic |
| CGTTGTCAGCGTTGACAACA+AGG | 0.575399 | 3.4:-93994334 | None:intergenic |
| ATAACAAACCTGGAAGAAAG+AGG | 0.579894 | 3.4:-93995849 | None:intergenic |
| GGTGACTCCGTTGTTCTCAT+GGG | 0.580224 | 3.4:+93994398 | MS.gene072977:CDS |
| ACGAACAGATCGCTTCATCA+TGG | 0.583200 | 3.4:-93994429 | None:intergenic |
| CCTTAACCTTGTCTGCCTCA+GGG | 0.589860 | 3.4:-93996290 | None:intergenic |
| GGAAGAAAGAGGTCTGAGAT+GGG | 0.590223 | 3.4:-93995838 | None:intergenic |
| CAGCTACAGCAAACTTACTT+GGG | 0.593694 | 3.4:-93996415 | None:intergenic |
| GGCAAGTGTTGGGTAAGAGA+TGG | 0.602128 | 3.4:-93996196 | None:intergenic |
| GAAAACTAACGACAAGAAGA+GGG | 0.606607 | 3.4:-93994496 | None:intergenic |
| TTGTTCCTCCAGGCAACACA+GGG | 0.611479 | 3.4:+93995810 | MS.gene072977:CDS |
| CAAGATTAACAAGGGTACTG+TGG | 0.615021 | 3.4:+93995948 | MS.gene072977:CDS |
| TGAAGAAGTTGCTAAATACA+AGG | 0.626443 | 3.4:+93995443 | MS.gene072977:CDS |
| GACGAACATATGAGGAGCAG+CGG | 0.628131 | 3.4:-93996217 | None:intergenic |
| CAGCTACAGAACATTCGTCA+GGG | 0.630095 | 3.4:+93994368 | MS.gene072977:CDS |
| GTTGTCAACGCTGACAACGT+TGG | 0.630374 | 3.4:+93994338 | MS.gene072977:CDS |
| TGGTTCAGTGTTTAGCCCTG+AGG | 0.633517 | 3.4:+93996098 | MS.gene072977:CDS |
| CAATGAAAGTGAAGTGACCA+TGG | 0.657879 | 3.4:-93996172 | None:intergenic |
| CAAGGTTAAGGAGTACCTGA+AGG | 0.661074 | 3.4:+93996302 | MS.gene072977:CDS |
| ATCCCAACCAAGATTAACAA+GGG | 0.664581 | 3.4:+93995940 | MS.gene072977:CDS |
| AACATTCGTCAGGGTCTACG+TGG | 0.667957 | 3.4:+93994377 | MS.gene072977:CDS |
| ATTCTTTCCCATGAGAACAA+CGG | 0.671401 | 3.4:-93994405 | None:intergenic |
| TGTGGAAATTATTACCCCTG+TGG | 0.672323 | 3.4:+93995966 | MS.gene072977:CDS |
| ACTCATTAAGAAAGGAGACA+AGG | 0.674494 | 3.4:+93995990 | MS.gene072977:CDS |
| TCGAGCCCTGTGTTGCCTGG+AGG | 0.687408 | 3.4:-93995815 | None:intergenic |
| TACCGAATATTCTTTCCCTG+AGG | 0.697745 | 3.4:+93996275 | MS.gene072977:CDS |
| CAGTGAGGTCAAGAACCTCA+GGG | 0.701495 | 3.4:-93996113 | None:intergenic |
| TGAGGTTCTTGACCTCACTG+AGG | 0.710337 | 3.4:+93996116 | MS.gene072977:CDS |
| AACCATTGTCATAAACAGAG+AGG | 0.717707 | 3.4:-93996080 | None:intergenic |
| TTTCTTAATGAGTTCCACAG+GGG | 0.725748 | 3.4:-93995980 | None:intergenic |
| CTACAAGGTCATCCTCAGTG+AGG | 0.743500 | 3.4:-93996128 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCAAAGAATAAGAAAAA+TGG | - | chr3.4:93996380-93996399 | None:intergenic | 15.0% |
| !! | AAGCTTATAAATAATACATA+GGG | + | chr3.4:93994866-93994885 | MS.gene072977:intron | 15.0% |
| !! | AATCAAAGAATAAGAAAAAT+GGG | - | chr3.4:93996379-93996398 | None:intergenic | 15.0% |
| !! | TAAGCTTATAAATAATACAT+AGG | + | chr3.4:93994865-93994884 | MS.gene072977:intron | 15.0% |
| !! | TATTATTTATAAGCTTATCA+AGG | - | chr3.4:93994862-93994881 | None:intergenic | 15.0% |
| !!! | AGTCTAACTTTATTTATAAT+GGG | + | chr3.4:93994717-93994736 | MS.gene072977:intron | 15.0% |
| !! | TAATTGTCTTAAATCTGAAT+AGG | + | chr3.4:93995742-93995761 | MS.gene072977:intron | 20.0% |
| !! | TATGCAAATAAATAAGCTTA+TGG | - | chr3.4:93995139-93995158 | None:intergenic | 20.0% |
| !!! | CAGTCTAACTTTATTTATAA+TGG | + | chr3.4:93994716-93994735 | MS.gene072977:intron | 20.0% |
| !!! | GTCTAACTTTATTTATAATG+GGG | + | chr3.4:93994718-93994737 | MS.gene072977:intron | 20.0% |
| ! | AATTACTGCACTATATTATG+AGG | + | chr3.4:93995325-93995344 | MS.gene072977:intron | 25.0% |
| ! | ATATGTTATGTTGTTAAGCA+TGG | + | chr3.4:93995490-93995509 | MS.gene072977:intron | 25.0% |
| ! | ATTTACAGAAATTGTAACGA+GGG | - | chr3.4:93995636-93995655 | None:intergenic | 25.0% |
| ! | CTTTATGTTAATTCACAAGT+GGG | + | chr3.4:93994795-93994814 | MS.gene072977:intron | 25.0% |
| ! | TATTTACAGAAATTGTAACG+AGG | - | chr3.4:93995637-93995656 | None:intergenic | 25.0% |
| ! | TCTTTATGTTAATTCACAAG+TGG | + | chr3.4:93994794-93994813 | MS.gene072977:intron | 25.0% |
| ! | TTAAAAGAAGATAACAAACC+TGG | - | chr3.4:93995862-93995881 | None:intergenic | 25.0% |
| ! | TTATGTTTATTCTCCACTTT+AGG | + | chr3.4:93995909-93995928 | MS.gene072977:intron | 25.0% |
| !! | AATAAGAAAAATGGGAGTAT+TGG | - | chr3.4:93996371-93996390 | None:intergenic | 25.0% |
| !! | AATACTTTTCGTTTGATGTA+TGG | + | chr3.4:93995656-93995675 | MS.gene072977:intron | 25.0% |
| !! | TTTAGTGATTTTGTGTGATT+TGG | + | chr3.4:93994572-93994591 | MS.gene072977:intron | 25.0% |
| !!! | ATAAGAAAAATGGGAGTATT+GGG | - | chr3.4:93996370-93996389 | None:intergenic | 25.0% |
| !!! | TTCTGTTTTTTGTTACGTAT+AGG | + | chr3.4:93994608-93994627 | MS.gene072977:intron | 25.0% |
| AAAATAAGCTCAATCCAAAC+GGG | + | chr3.4:93995112-93995131 | MS.gene072977:intron | 30.0% | |
| AAATAATACATAGGGTCTGT+TGG | + | chr3.4:93994874-93994893 | MS.gene072977:intron | 30.0% | |
| AATAATACATAGGGTCTGTT+GGG | + | chr3.4:93994875-93994894 | MS.gene072977:intron | 30.0% | |
| ACTAGAGGTGACAAAAAAAA+TGG | - | chr3.4:93995562-93995581 | None:intergenic | 30.0% | |
| CAAAATAAGCTCAATCCAAA+CGG | + | chr3.4:93995111-93995130 | MS.gene072977:intron | 30.0% | |
| CATTCAACAAACAAAACAAG+TGG | - | chr3.4:93995709-93995728 | None:intergenic | 30.0% | |
| TAGTGAGAACTTGTGAATTA+AGG | + | chr3.4:93995048-93995067 | MS.gene072977:intron | 30.0% | |
| TGAAGAAGTTGCTAAATACA+AGG | + | chr3.4:93995443-93995462 | MS.gene072977:CDS | 30.0% | |
| TGTCTTAAATCTGAATAGGT+TGG | + | chr3.4:93995746-93995765 | MS.gene072977:intron | 30.0% | |
| TTCGCTGTTCGATTTAATAA+TGG | + | chr3.4:93994539-93994558 | MS.gene072977:intron | 30.0% | |
| ! | TATTGTTGTTAACTCTTGTG+AGG | + | chr3.4:93995357-93995376 | MS.gene072977:intron | 30.0% |
| !! | TTGTAGCAAAGTTTGCTATT+GGG | + | chr3.4:93996145-93996164 | MS.gene072977:CDS | 30.0% |
| !!! | GTTGGTTTGATTTTCACTAA+AGG | + | chr3.4:93995402-93995421 | MS.gene072977:CDS | 30.0% |
| AAAAGCAAGAACGTTCTTGT+AGG | - | chr3.4:93996247-93996266 | None:intergenic | 35.0% | |
| AAATAAGCTCAATCCAAACG+GGG | + | chr3.4:93995113-93995132 | MS.gene072977:intron | 35.0% | |
| AACCATTGTCATAAACAGAG+AGG | - | chr3.4:93996083-93996102 | None:intergenic | 35.0% | |
| ACTCATTAAGAAAGGAGACA+AGG | + | chr3.4:93995990-93996009 | MS.gene072977:CDS | 35.0% | |
| AGAAAACTAACGACAAGAAG+AGG | - | chr3.4:93994500-93994519 | None:intergenic | 35.0% | |
| ATAACAAACCTGGAAGAAAG+AGG | - | chr3.4:93995852-93995871 | None:intergenic | 35.0% | |
| ATCCCAACCAAGATTAACAA+GGG | + | chr3.4:93995940-93995959 | MS.gene072977:CDS | 35.0% | |
| ATGTTGAAGTCAATACCTTC+AGG | - | chr3.4:93996320-93996339 | None:intergenic | 35.0% | |
| ATTAAGAAAGGAGACAAGGT+TGG | + | chr3.4:93995994-93996013 | MS.gene072977:CDS | 35.0% | |
| ATTCTTTCCCATGAGAACAA+CGG | - | chr3.4:93994408-93994427 | None:intergenic | 35.0% | |
| CAATAGCAAACTTTGCTACA+AGG | - | chr3.4:93996146-93996165 | None:intergenic | 35.0% | |
| CTTTCTTAATGAGTTCCACA+GGG | - | chr3.4:93995984-93996003 | None:intergenic | 35.0% | |
| GAAAACTAACGACAAGAAGA+GGG | - | chr3.4:93994499-93994518 | None:intergenic | 35.0% | |
| GCAATAACTGTCTCTTTGTT+TGG | - | chr3.4:93995241-93995260 | None:intergenic | 35.0% | |
| TACCCTTGTTAATCTTGGTT+GGG | - | chr3.4:93995945-93995964 | None:intergenic | 35.0% | |
| TTTCACTAAAGGTGACTTGA+AGG | + | chr3.4:93995413-93995432 | MS.gene072977:CDS | 35.0% | |
| TTTCTTAATGAGTTCCACAG+GGG | - | chr3.4:93995983-93996002 | None:intergenic | 35.0% | |
| !! | CTTGTAGCAAAGTTTGCTAT+TGG | + | chr3.4:93996144-93996163 | MS.gene072977:CDS | 35.0% |
| !! | CTTTGATTTTTGTTCACTGC+AGG | + | chr3.4:93996391-93996410 | MS.gene072977:intron | 35.0% |
| !! | TCTGATGAAGACATTGGTTT+CGG | + | chr3.4:93996524-93996543 | MS.gene072977:CDS | 35.0% |
| !! | TGTAGCAAAGTTTGCTATTG+GGG | + | chr3.4:93996146-93996165 | MS.gene072977:CDS | 35.0% |
| !!! | TTTTTTTGTCACCTCTAGTG+AGG | + | chr3.4:93995563-93995582 | MS.gene072977:intron | 35.0% |
| ACAGCTACAGCAAACTTACT+TGG | - | chr3.4:93996419-93996438 | None:intergenic | 40.0% | |
| CAATGAAAGTGAAGTGACCA+TGG | - | chr3.4:93996175-93996194 | None:intergenic | 40.0% | |
| CACAGTACCCTTGTTAATCT+TGG | - | chr3.4:93995950-93995969 | None:intergenic | 40.0% | |
| CAGCTACAGCAAACTTACTT+GGG | - | chr3.4:93996418-93996437 | None:intergenic | 40.0% | |
| CATCCCAACCAAGATTAACA+AGG | + | chr3.4:93995939-93995958 | MS.gene072977:CDS | 40.0% | |
| CATGGTCACTTCACTTTCAT+TGG | + | chr3.4:93996173-93996192 | MS.gene072977:CDS | 40.0% | |
| CCTGTGGAACTCATTAAGAA+AGG | + | chr3.4:93995982-93996001 | MS.gene072977:CDS | 40.0% | |
| CCTTTCTTAATGAGTTCCAC+AGG | - | chr3.4:93995985-93996004 | None:intergenic | 40.0% | |
| GAAGAGTCTGATGAAGACAT+TGG | + | chr3.4:93996518-93996537 | MS.gene072977:CDS | 40.0% | |
| GTACCCTTGTTAATCTTGGT+TGG | - | chr3.4:93995946-93995965 | None:intergenic | 40.0% | |
| GTCCTCTCTGTTTATGACAA+TGG | + | chr3.4:93996078-93996097 | MS.gene072977:CDS | 40.0% | |
| TAACGACAAGAAGAGGGATA+AGG | - | chr3.4:93994493-93994512 | None:intergenic | 40.0% | |
| TACCGAATATTCTTTCCCTG+AGG | + | chr3.4:93996275-93996294 | MS.gene072977:CDS | 40.0% | |
| TCTTCATCAGACTCTTCTTC+AGG | - | chr3.4:93996515-93996534 | None:intergenic | 40.0% | |
| TGAGGATTTGTGCTGAATCA+GGG | + | chr3.4:93995375-93995394 | MS.gene072977:intron | 40.0% | |
| TGCCTCAGGGAAAGAATATT+CGG | - | chr3.4:93996280-93996299 | None:intergenic | 40.0% | |
| TGTGGAAATTATTACCCCTG+TGG | + | chr3.4:93995966-93995985 | MS.gene072977:CDS | 40.0% | |
| ! | ATAATGGGGCGTGTTTGAAT+TGG | + | chr3.4:93994732-93994751 | MS.gene072977:intron | 40.0% |
| ! | ATCGTAGTTCTGCTTCTTCT+CGG | - | chr3.4:93994276-93994295 | None:intergenic | 40.0% |
| !! | AGCGTTGACAACAAGGATTT+GGG | - | chr3.4:93994330-93994349 | None:intergenic | 40.0% |
| !! | CAAGATTAACAAGGGTACTG+TGG | + | chr3.4:93995948-93995967 | MS.gene072977:CDS | 40.0% |
| !! | GTCTCTTTGTTTGGTGCTTA+TGG | - | chr3.4:93995232-93995251 | None:intergenic | 40.0% |
| !! | GTTGAGAAAAGCATTGTTGC+CGG | - | chr3.4:93994471-93994490 | None:intergenic | 40.0% |
| !! | TAGGCATTGACGAACATATG+AGG | - | chr3.4:93996228-93996247 | None:intergenic | 40.0% |
| AAAGGGCCTAATGCCTAACT+TGG | - | chr3.4:93996043-93996062 | None:intergenic | 45.0% | |
| AATAAGCTTATGGCCCCGTT+TGG | - | chr3.4:93995129-93995148 | None:intergenic | 45.0% | |
| ACCACAAGCCCGTATGAAAA+GGG | - | chr3.4:93996060-93996079 | None:intergenic | 45.0% | |
| ACGAACAGATCGCTTCATCA+TGG | - | chr3.4:93994432-93994451 | None:intergenic | 45.0% | |
| ATCTCAGACCTCTTTCTTCC+AGG | + | chr3.4:93995841-93995860 | MS.gene072977:CDS | 45.0% | |
| ATTGATGTCGTTGTTCCTCC+AGG | + | chr3.4:93995800-93995819 | MS.gene072977:CDS | 45.0% | |
| CAGCTACAGAACATTCGTCA+GGG | + | chr3.4:93994368-93994387 | MS.gene072977:CDS | 45.0% | |
| GGAGGAACAACGACATCAAT+TGG | - | chr3.4:93995800-93995819 | None:intergenic | 45.0% | |
| GGGTGTATTCATCGATAAGC+TGG | - | chr3.4:93994310-93994329 | None:intergenic | 45.0% | |
| GTATGGCAATTGCAGCAATG+TGG | + | chr3.4:93995673-93995692 | MS.gene072977:intron | 45.0% | |
| GTGAGGATTTGTGCTGAATC+AGG | + | chr3.4:93995374-93995393 | MS.gene072977:intron | 45.0% | |
| GTGCTGAATCAGGGTAATGT+TGG | + | chr3.4:93995384-93995403 | MS.gene072977:intron | 45.0% | |
| TCAGCTACAGAACATTCGTC+AGG | + | chr3.4:93994367-93994386 | MS.gene072977:CDS | 45.0% | |
| TGCTTGCCAAGTTAGGCATT+AGG | + | chr3.4:93996034-93996053 | MS.gene072977:CDS | 45.0% | |
| TGGAAGAAAGAGGTCTGAGA+TGG | - | chr3.4:93995842-93995861 | None:intergenic | 45.0% | |
| ! | GCATTAGGCCCTTTTCATAC+GGG | + | chr3.4:93996049-93996068 | MS.gene072977:CDS | 45.0% |
| ! | GGAAGAAAGAGGTCTGAGAT+GGG | - | chr3.4:93995841-93995860 | None:intergenic | 45.0% |
| ! | GGCATTAGGCCCTTTTCATA+CGG | + | chr3.4:93996048-93996067 | MS.gene072977:CDS | 45.0% |
| !! | CAAGGTTAAGGAGTACCTGA+AGG | + | chr3.4:93996302-93996321 | MS.gene072977:CDS | 45.0% |
| !! | CAGCGTTGACAACAAGGATT+TGG | - | chr3.4:93994331-93994350 | None:intergenic | 45.0% |
| !! | GACATTGGTTTCGGTCTGTT+TGG | + | chr3.4:93996533-93996552 | MS.gene072977:CDS | 45.0% |
| !! | GTTTGCTATTGGGGTTTCCA+TGG | + | chr3.4:93996155-93996174 | MS.gene072977:CDS | 45.0% |
| !! | AACTTATAAATAATAAATAA+AGG | - | chr3.4:93994950-93994969 | None:intergenic | 5.0% |
| AACATTCGTCAGGGTCTACG+TGG | + | chr3.4:93994377-93994396 | MS.gene072977:CDS | 50.0% | |
| CAACCACAGTACCTCACTAG+AGG | - | chr3.4:93995577-93995596 | None:intergenic | 50.0% | |
| CAGTGAGGTCAAGAACCTCA+GGG | - | chr3.4:93996116-93996135 | None:intergenic | 50.0% | |
| CCTTAACCTTGTCTGCCTCA+GGG | - | chr3.4:93996293-93996312 | None:intergenic | 50.0% | |
| CGTATGCACGCTGAGAAAAC+CGG | + | chr3.4:93994449-93994468 | MS.gene072977:CDS | 50.0% | |
| CTACAAGGTCATCCTCAGTG+AGG | - | chr3.4:93996131-93996150 | None:intergenic | 50.0% | |
| GACCACAAGCCCGTATGAAA+AGG | - | chr3.4:93996061-93996080 | None:intergenic | 50.0% | |
| GACGAACATATGAGGAGCAG+CGG | - | chr3.4:93996220-93996239 | None:intergenic | 50.0% | |
| GCTGCATTGCTTGCCAAGTT+AGG | + | chr3.4:93996027-93996046 | MS.gene072977:CDS | 50.0% | |
| GGGATGTTGAGCACCTAAAG+TGG | - | chr3.4:93995925-93995944 | None:intergenic | 50.0% | |
| GGTGACTCCGTTGTTCTCAT+GGG | + | chr3.4:93994398-93994417 | MS.gene072977:CDS | 50.0% | |
| GTTCTGCTTCTTCTCGGCTT+TGG | - | chr3.4:93994270-93994289 | None:intergenic | 50.0% | |
| GTTGTCAACGCTGACAACGT+TGG | + | chr3.4:93994338-93994357 | MS.gene072977:CDS | 50.0% | |
| TCAGTGAGGTCAAGAACCTC+AGG | - | chr3.4:93996117-93996136 | None:intergenic | 50.0% | |
| TCCTTAACCTTGTCTGCCTC+AGG | - | chr3.4:93996294-93996313 | None:intergenic | 50.0% | |
| TGAGGTTCTTGACCTCACTG+AGG | + | chr3.4:93996116-93996135 | MS.gene072977:CDS | 50.0% | |
| TGGTGACTCCGTTGTTCTCA+TGG | + | chr3.4:93994397-93994416 | MS.gene072977:CDS | 50.0% | |
| TGGTTCAGTGTTTAGCCCTG+AGG | + | chr3.4:93996098-93996117 | MS.gene072977:CDS | 50.0% | |
| TTCCTTCTTTGCCTCCTCCT+TGG | - | chr3.4:93996489-93996508 | None:intergenic | 50.0% | |
| TTCTTTCCCTGAGGCAGACA+AGG | + | chr3.4:93996284-93996303 | MS.gene072977:CDS | 50.0% | |
| TTGTTCCTCCAGGCAACACA+GGG | + | chr3.4:93995810-93995829 | MS.gene072977:CDS | 50.0% | |
| ! | TGCTTCTTCTCGGCTTTGGT+AGG | - | chr3.4:93994266-93994285 | None:intergenic | 50.0% |
| !! | CGTTGTCAGCGTTGACAACA+AGG | - | chr3.4:93994337-93994356 | None:intergenic | 50.0% |
| !! | GGCAAGTGTTGGGTAAGAGA+TGG | - | chr3.4:93996199-93996218 | None:intergenic | 50.0% |
| !! | TCACCTCTAGTGAGGTACTG+TGG | + | chr3.4:93995571-93995590 | MS.gene072977:intron | 50.0% |
| AAGCGCGTACTCACTGCGTA+CGG | - | chr3.4:93995203-93995222 | None:intergenic | 55.0% | |
| CCCTGAGGCAGACAAGGTTA+AGG | + | chr3.4:93996290-93996309 | MS.gene072977:CDS | 55.0% | |
| CTGCGTACGGGCGTTAGAAT+TGG | - | chr3.4:93995190-93995209 | None:intergenic | 55.0% | |
| GCAACCAAACCAACACGAGC+AGG | - | chr3.4:93995776-93995795 | None:intergenic | 55.0% | |
| GTTGTTCCTCCAGGCAACAC+AGG | + | chr3.4:93995809-93995828 | MS.gene072977:CDS | 55.0% | |
| TGCCAAGGAGGAGGCAAAGA+AGG | + | chr3.4:93996484-93996503 | MS.gene072977:CDS | 55.0% | |
| ! | GCCCTTTTCATACGGGCTTG+TGG | + | chr3.4:93996056-93996075 | MS.gene072977:CDS | 55.0% |
| !! | AGCTCCTGCTCGTGTTGGTT+TGG | + | chr3.4:93995769-93995788 | MS.gene072977:CDS | 55.0% |
| AGCGCGTACTCACTGCGTAC+GGG | - | chr3.4:93995202-93995221 | None:intergenic | 60.0% | |
| GAGGAGCAGCGGCAAGTGTT+GGG | - | chr3.4:93996209-93996228 | None:intergenic | 60.0% | |
| GCAGTGAGTACGCGCTTGTG+TGG | + | chr3.4:93995206-93995225 | MS.gene072977:intron | 60.0% | |
| GTTGGAGCTCCTGCTCGTGT+TGG | + | chr3.4:93995764-93995783 | MS.gene072977:CDS | 60.0% | |
| TGAGGAGCAGCGGCAAGTGT+TGG | - | chr3.4:93996210-93996229 | None:intergenic | 60.0% | |
| ACCAGACGCAGCAGCAGCTG+GGG | - | chr3.4:93996447-93996466 | None:intergenic | 65.0% | |
| CACCAGACGCAGCAGCAGCT+GGG | - | chr3.4:93996448-93996467 | None:intergenic | 65.0% | |
| CCTCCTTGGCAGCTGCAGCA+GGG | - | chr3.4:93996475-93996494 | None:intergenic | 65.0% | |
| CTCCTTGGCAGCTGCAGCAG+GGG | - | chr3.4:93996474-93996493 | None:intergenic | 65.0% | |
| TCCTCCTTGGCAGCTGCAGC+AGG | - | chr3.4:93996476-93996495 | None:intergenic | 65.0% | |
| TCGAGCCCTGTGTTGCCTGG+AGG | - | chr3.4:93995818-93995837 | None:intergenic | 65.0% | |
| TGCTGCAGCTGCCAAGGAGG+AGG | + | chr3.4:93996475-93996494 | MS.gene072977:CDS | 65.0% | |
| CCACCAGACGCAGCAGCAGC+TGG | - | chr3.4:93996449-93996468 | None:intergenic | 70.0% | |
| CCAGCTGCTGCTGCGTCTGG+TGG | + | chr3.4:93996446-93996465 | MS.gene072977:CDS | 70.0% | |
| CCCTGCTGCAGCTGCCAAGG+AGG | + | chr3.4:93996472-93996491 | MS.gene072977:CDS | 70.0% | |
| GGGTCGAGCCCTGTGTTGCC+TGG | - | chr3.4:93995821-93995840 | None:intergenic | 70.0% | |
| TGCCCCTGCTGCAGCTGCCA+AGG | + | chr3.4:93996469-93996488 | MS.gene072977:CDS | 70.0% | |
| GCCCCAGCTGCTGCTGCGTC+TGG | + | chr3.4:93996443-93996462 | MS.gene072977:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 93994251 | 93996565 | 93994251 | ID=MS.gene072977 |
| chr3.4 | mRNA | 93994251 | 93996565 | 93994251 | ID=MS.gene072977.t1;Parent=MS.gene072977 |
| chr3.4 | exon | 93994251 | 93994508 | 93994251 | ID=MS.gene072977.t1.exon1;Parent=MS.gene072977.t1 |
| chr3.4 | CDS | 93994251 | 93994508 | 93994251 | ID=cds.MS.gene072977.t1;Parent=MS.gene072977.t1 |
| chr3.4 | exon | 93995396 | 93995464 | 93995396 | ID=MS.gene072977.t1.exon2;Parent=MS.gene072977.t1 |
| chr3.4 | CDS | 93995396 | 93995464 | 93995396 | ID=cds.MS.gene072977.t1;Parent=MS.gene072977.t1 |
| chr3.4 | exon | 93995764 | 93995862 | 93995764 | ID=MS.gene072977.t1.exon3;Parent=MS.gene072977.t1 |
| chr3.4 | CDS | 93995764 | 93995862 | 93995764 | ID=cds.MS.gene072977.t1;Parent=MS.gene072977.t1 |
| chr3.4 | exon | 93995931 | 93996323 | 93995931 | ID=MS.gene072977.t1.exon4;Parent=MS.gene072977.t1 |
| chr3.4 | CDS | 93995931 | 93996323 | 93995931 | ID=cds.MS.gene072977.t1;Parent=MS.gene072977.t1 |
| chr3.4 | exon | 93996413 | 93996565 | 93996413 | ID=MS.gene072977.t1.exon5;Parent=MS.gene072977.t1 |
| chr3.4 | CDS | 93996413 | 93996565 | 93996413 | ID=cds.MS.gene072977.t1;Parent=MS.gene072977.t1 |
| Gene Sequence |
| Protein sequence |
