Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073277.t1 | XP_003610102.1 | 92.4 | 224 | 16 | 1 | 2 | 225 | 4 | 226 | 1.50E-112 | 415.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073277.t1 | Q9ZQ19 | 44.7 | 226 | 119 | 4 | 2 | 224 | 5 | 227 | 1.8e-47 | 190.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073277.t1 | A0A072UTZ7 | 92.4 | 224 | 16 | 1 | 2 | 225 | 4 | 226 | 1.1e-112 | 415.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049250 | MS.gene073277 | 0.810122 | 1.35E-50 | -1.69E-46 |
| MS.gene049251 | MS.gene073277 | 0.814535 | 1.47E-51 | -1.69E-46 |
| MS.gene049660 | MS.gene073277 | 0.801736 | 7.82E-49 | -1.69E-46 |
| MS.gene049989 | MS.gene073277 | 0.814102 | 1.83E-51 | -1.69E-46 |
| MS.gene05054 | MS.gene073277 | 0.809008 | 2.34E-50 | -1.69E-46 |
| MS.gene053173 | MS.gene073277 | 0.842613 | 2.32E-58 | -1.69E-46 |
| MS.gene053348 | MS.gene073277 | 0.83704 | 6.57E-57 | -1.69E-46 |
| MS.gene054551 | MS.gene073277 | 0.857749 | 1.32E-62 | -1.69E-46 |
| MS.gene054593 | MS.gene073277 | 0.847819 | 9.09E-60 | -1.69E-46 |
| MS.gene055251 | MS.gene073277 | 0.813579 | 2.38E-51 | -1.69E-46 |
| MS.gene056041 | MS.gene073277 | 0.808103 | 3.65E-50 | -1.69E-46 |
| MS.gene05640 | MS.gene073277 | 0.807089 | 5.99E-50 | -1.69E-46 |
| MS.gene056526 | MS.gene073277 | 0.836892 | 7.17E-57 | -1.69E-46 |
| MS.gene056528 | MS.gene073277 | 0.816095 | 6.60E-52 | -1.69E-46 |
| MS.gene058853 | MS.gene073277 | 0.810753 | 9.85E-51 | -1.69E-46 |
| MS.gene060473 | MS.gene073277 | 0.812856 | 3.43E-51 | -1.69E-46 |
| MS.gene060565 | MS.gene073277 | 0.81347 | 2.52E-51 | -1.69E-46 |
| MS.gene06093 | MS.gene073277 | 0.801568 | 8.47E-49 | -1.69E-46 |
| MS.gene061099 | MS.gene073277 | 0.822935 | 1.81E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073277.t1 | MTR_4g127950 | 92.411 | 224 | 16 | 1 | 2 | 225 | 4 | 226 | 8.50e-155 | 429 |
| MS.gene073277.t1 | MTR_4g127950 | 92.411 | 224 | 16 | 1 | 2 | 225 | 4 | 226 | 6.29e-154 | 428 |
| MS.gene073277.t1 | MTR_1g009890 | 43.439 | 221 | 120 | 3 | 2 | 221 | 5 | 221 | 4.85e-60 | 190 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073277.t1 | AT3G02920 | 46.875 | 224 | 112 | 3 | 4 | 224 | 6 | 225 | 8.67e-68 | 208 |
| MS.gene073277.t1 | AT3G02920 | 46.875 | 224 | 112 | 3 | 4 | 224 | 6 | 225 | 8.67e-68 | 208 |
| MS.gene073277.t1 | AT3G02920 | 46.875 | 224 | 112 | 3 | 4 | 224 | 6 | 225 | 3.89e-67 | 208 |
| MS.gene073277.t1 | AT2G24490 | 44.690 | 226 | 119 | 4 | 2 | 224 | 5 | 227 | 1.04e-62 | 197 |
| MS.gene073277.t1 | AT2G24490 | 44.690 | 226 | 119 | 4 | 2 | 224 | 5 | 227 | 1.04e-62 | 197 |
Find 57 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATATAATTCGAAGTTAC+AGG | 0.284161 | 8.4:+6576824 | MS.gene073277:CDS |
| GGAATGTATGTGCGTTTATA+TGG | 0.285958 | 8.4:+6576525 | MS.gene073277:CDS |
| GCTGATTGGGGATGCTAGCC+TGG | 0.316731 | 8.4:-6577686 | None:intergenic |
| TTGGGAGCATGTTGCTGATT+GGG | 0.326890 | 8.4:-6577699 | None:intergenic |
| GGCAGTGCTTTGTATGGAAT+TGG | 0.344322 | 8.4:-6577718 | None:intergenic |
| GGTAGGGTTTGCAACAAATC+TGG | 0.360046 | 8.4:+6575522 | MS.gene073277:CDS |
| TCTGTCCAGGTTACTCTTGT+TGG | 0.363119 | 8.4:+6575501 | MS.gene073277:intron |
| GAACAATCGAGTGTACTAAA+TGG | 0.372337 | 8.4:+6575586 | MS.gene073277:CDS |
| TATGGTTGACTTACTTGATT+TGG | 0.375750 | 8.4:-6577771 | None:intergenic |
| GACGGTAACGCCGCTTTCTC+CGG | 0.395800 | 8.4:+6575098 | MS.gene073277:CDS |
| CCTGAGAGAGAAAATACTTA+AGG | 0.400373 | 8.4:-6576577 | None:intergenic |
| ATTGGGAGCATGTTGCTGAT+TGG | 0.409358 | 8.4:-6577700 | None:intergenic |
| CATAAATGCACTCAAGGAAA+TGG | 0.411902 | 8.4:-6576797 | None:intergenic |
| CGGCGGTTTCATGCCTTCTC+AGG | 0.416064 | 8.4:+6575121 | MS.gene073277:CDS |
| CCAGGTTACTCTTGTTGGTA+GGG | 0.423374 | 8.4:+6575506 | MS.gene073277:intron |
| AGAGGATTCACCGCCTTGAT+TGG | 0.430570 | 8.4:-6575144 | None:intergenic |
| TCCAGGTTACTCTTGTTGGT+AGG | 0.433239 | 8.4:+6575505 | MS.gene073277:intron |
| GCAGTGCTTTGTATGGAATT+GGG | 0.465281 | 8.4:-6577717 | None:intergenic |
| ACTTACTTGATTTGGTGGAA+TGG | 0.471859 | 8.4:-6577763 | None:intergenic |
| ATGCCTTCTCAGGCCAATCA+AGG | 0.473622 | 8.4:+6575131 | MS.gene073277:CDS |
| ATCTCATTGAAGTCAGTAAC+GGG | 0.478767 | 8.4:-6576768 | None:intergenic |
| AACGCCGCTTTCTCCGGCGG+CGG | 0.487082 | 8.4:+6575104 | MS.gene073277:CDS |
| TCCACTGCCATTGCATCAGC+AGG | 0.490315 | 8.4:-6575723 | None:intergenic |
| CGTTTATATGGACAATTGAA+AGG | 0.493252 | 8.4:+6576537 | MS.gene073277:CDS |
| TTTGTACTTGACGATGGCAC+TGG | 0.500314 | 8.4:+6575564 | MS.gene073277:CDS |
| GGTTGACTTACTTGATTTGG+TGG | 0.502710 | 8.4:-6577768 | None:intergenic |
| CCGCCTTGATTGGCCTGAGA+AGG | 0.504121 | 8.4:-6575134 | None:intergenic |
| TTCTCCGGTCAGCAGAATAA+TGG | 0.506082 | 8.4:+6577855 | MS.gene073277:CDS |
| CAATCAAGTGATGATAGAAC+CGG | 0.507029 | 8.4:+6575382 | MS.gene073277:CDS |
| TTTAAAATACACCTGTTTGT+GGG | 0.516085 | 8.4:-6577921 | None:intergenic |
| ATACAAAGCACTGCCACAAA+AGG | 0.519488 | 8.4:+6577726 | MS.gene073277:CDS |
| CTGATTGGGGATGCTAGCCT+GGG | 0.532257 | 8.4:-6577685 | None:intergenic |
| ATCCTCTCTCACTCCCTCCA+AGG | 0.534425 | 8.4:+6575160 | MS.gene073277:CDS |
| AACCTTGGAGGGAGTGAGAG+AGG | 0.538834 | 8.4:-6575162 | None:intergenic |
| GATGAACATAAATGCACTCA+AGG | 0.548211 | 8.4:-6576803 | None:intergenic |
| TCACGAACCTGCTGATGCAA+TGG | 0.548561 | 8.4:+6575716 | MS.gene073277:CDS |
| GAAACCGCCGCCGGAGAAAG+CGG | 0.554313 | 8.4:-6575108 | None:intergenic |
| GGTCTTACTATTGACGGTGT+TGG | 0.564776 | 8.4:+6575403 | MS.gene073277:CDS |
| ACCTGCTGATGCAATGGCAG+TGG | 0.566074 | 8.4:+6575722 | MS.gene073277:CDS |
| AATGCACTCAAGGAAATGGC+TGG | 0.568941 | 8.4:-6576793 | None:intergenic |
| TGGGAGCATGTTGCTGATTG+GGG | 0.569773 | 8.4:-6577698 | None:intergenic |
| CATCACTTGATTGAAGAGCA+TGG | 0.578483 | 8.4:-6575372 | None:intergenic |
| CTGACCATTATTCTGCTGAC+CGG | 0.581910 | 8.4:-6577859 | None:intergenic |
| AACACCGTCAATAGTAAGAC+CGG | 0.588874 | 8.4:-6575401 | None:intergenic |
| AGAACTGAGAAGAACCTTGG+AGG | 0.589879 | 8.4:-6575174 | None:intergenic |
| TTTAAGTTTGTACTTGACGA+TGG | 0.593316 | 8.4:+6575558 | MS.gene073277:CDS |
| AGAACCGGTCTTACTATTGA+CGG | 0.593890 | 8.4:+6575397 | MS.gene073277:CDS |
| ATATTTGTGGCAGCATACCC+AGG | 0.594726 | 8.4:+6577668 | MS.gene073277:intron |
| GGTAACGCCGCTTTCTCCGG+CGG | 0.597825 | 8.4:+6575101 | MS.gene073277:CDS |
| AATCTCATTGAAGTCAGTAA+CGG | 0.599498 | 8.4:-6576769 | None:intergenic |
| GAACTGAGAAGAACCTTGGA+GGG | 0.608680 | 8.4:-6575173 | None:intergenic |
| GTTACCGTCGAACTGACTCA+TGG | 0.626404 | 8.4:-6575084 | None:intergenic |
| TCAGAAGAGTGTTCATGACT+TGG | 0.632574 | 8.4:+6577878 | MS.gene073277:CDS |
| AGAAGGCATGAAACCGCCGC+CGG | 0.632650 | 8.4:-6575117 | None:intergenic |
| TTGATCTGCTTGATCGTCAG+CGG | 0.639696 | 8.4:-6575349 | None:intergenic |
| GGCACCATGAGTCAGTTCGA+CGG | 0.714184 | 8.4:+6575080 | None:intergenic |
| CCTTCTCAGGCCAATCAAGG+CGG | 0.735731 | 8.4:+6575134 | MS.gene073277:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAAGTTAAAGGTTTA+GGG | - | chr8.4:6576377-6576396 | None:intergenic | 15.0% |
| !! | TAAGATTATTAAGAAGAAAA+TGG | - | chr8.4:6575206-6575225 | None:intergenic | 15.0% |
| !!! | ATTTTATTTTGTAATGTCTA+GGG | - | chr8.4:6576947-6576966 | None:intergenic | 15.0% |
| !!! | TATTTTATTTTGTAATGTCT+AGG | - | chr8.4:6576948-6576967 | None:intergenic | 15.0% |
| !!! | TTTTTTTCCATAAAAGAAAA+AGG | + | chr8.4:6576226-6576245 | MS.gene073277:intron | 15.0% |
| !! | GAAAATAAGATACATGTTTA+GGG | + | chr8.4:6577436-6577455 | MS.gene073277:intron | 20.0% |
| !! | GATTAAAAAGTTAAAGGTTT+AGG | - | chr8.4:6576378-6576397 | None:intergenic | 20.0% |
| !! | TAAGCAGAAAATAAAAGATA+TGG | - | chr8.4:6577792-6577811 | None:intergenic | 20.0% |
| !! | TGAAAATAAGATACATGTTT+AGG | + | chr8.4:6577435-6577454 | MS.gene073277:intron | 20.0% |
| !! | TTATACTTTCTATGTAAGTA+AGG | + | chr8.4:6575839-6575858 | MS.gene073277:intron | 20.0% |
| !!! | AAAATTCCATTTTCATTGTT+AGG | + | chr8.4:6576499-6576518 | MS.gene073277:intron | 20.0% |
| !!! | ATTAAATTACTGTTTCTTGT+TGG | - | chr8.4:6577511-6577530 | None:intergenic | 20.0% |
| !!! | TCTTATAACTAAGTTTTACT+AGG | + | chr8.4:6576170-6576189 | MS.gene073277:intron | 20.0% |
| !!! | TTTCTTTCCTTTTTCTTTTA+TGG | - | chr8.4:6576236-6576255 | None:intergenic | 20.0% |
| !!! | TTTTTATAGTGTGAATTTTG+TGG | - | chr8.4:6577016-6577035 | None:intergenic | 20.0% |
| ! | AACTTAGTTATAAGAAGAAG+CGG | - | chr8.4:6576165-6576184 | None:intergenic | 25.0% |
| ! | ACGATAAATAAATAAACCAG+AGG | - | chr8.4:6576452-6576471 | None:intergenic | 25.0% |
| ! | ACTCTCAGTTGTATAAAATT+AGG | + | chr8.4:6577043-6577062 | MS.gene073277:intron | 25.0% |
| ! | ATAAATAAATAAACCAGAGG+GGG | - | chr8.4:6576449-6576468 | None:intergenic | 25.0% |
| ! | ATTGCATTTAGTACTATACT+TGG | + | chr8.4:6575798-6575817 | MS.gene073277:intron | 25.0% |
| ! | CAAAGGGATTAAAAAGTTAA+AGG | - | chr8.4:6576384-6576403 | None:intergenic | 25.0% |
| ! | CATTTGCCATTCAAAATAAA+AGG | - | chr8.4:6576304-6576323 | None:intergenic | 25.0% |
| ! | CGATAAATAAATAAACCAGA+GGG | - | chr8.4:6576451-6576470 | None:intergenic | 25.0% |
| ! | GATAAATAAATAAACCAGAG+GGG | - | chr8.4:6576450-6576469 | None:intergenic | 25.0% |
| ! | GGGTGATTATAATATCAAAA+TGG | - | chr8.4:6576043-6576062 | None:intergenic | 25.0% |
| ! | GTACTAAATGCAATACAATA+AGG | - | chr8.4:6575792-6575811 | None:intergenic | 25.0% |
| ! | TCTATATAATTCGAAGTTAC+AGG | + | chr8.4:6576824-6576843 | MS.gene073277:CDS | 25.0% |
| !! | CATGTAATTGATGTGTTTTA+GGG | + | chr8.4:6575282-6575301 | MS.gene073277:intron | 25.0% |
| !! | TATAAAGAACTAATTTGCCT+AGG | + | chr8.4:6577554-6577573 | MS.gene073277:intron | 25.0% |
| !! | TCATGTAATTGATGTGTTTT+AGG | + | chr8.4:6575281-6575300 | MS.gene073277:intron | 25.0% |
| !! | TGTATGTTACCTTTTCTTTA+CGG | + | chr8.4:6575754-6575773 | MS.gene073277:intron | 25.0% |
| !!! | ATTTAGGTTTTGAATTTGAC+AGG | - | chr8.4:6577159-6577178 | None:intergenic | 25.0% |
| !!! | TTTAGGTTTTGAATTTGACA+GGG | - | chr8.4:6577158-6577177 | None:intergenic | 25.0% |
| AACATCAATTAGACATGCTA+GGG | + | chr8.4:6575231-6575250 | MS.gene073277:intron | 30.0% | |
| AATCTCATTGAAGTCAGTAA+CGG | - | chr8.4:6576772-6576791 | None:intergenic | 30.0% | |
| ACTTATAAGTCCATGTCTTT+AGG | - | chr8.4:6577471-6577490 | None:intergenic | 30.0% | |
| AGAAAACACTAAGAATACCT+TGG | + | chr8.4:6577221-6577240 | MS.gene073277:intron | 30.0% | |
| AGAAAGAAGAAAAAAAGTCG+TGG | + | chr8.4:6577389-6577408 | MS.gene073277:intron | 30.0% | |
| AGAAATATGTGATTGCATTG+AGG | + | chr8.4:6576251-6576270 | MS.gene073277:intron | 30.0% | |
| ATGTAAGTAAGGATAGGAAT+AGG | + | chr8.4:6575850-6575869 | MS.gene073277:intron | 30.0% | |
| CCTGAAAATGACACAAATTA+AGG | - | chr8.4:6576748-6576767 | None:intergenic | 30.0% | |
| CGTTTATATGGACAATTGAA+AGG | + | chr8.4:6576537-6576556 | MS.gene073277:CDS | 30.0% | |
| CTATTGTGAATTACGATTTG+TGG | + | chr8.4:6575454-6575473 | MS.gene073277:intron | 30.0% | |
| CTTTCTATGTAAGTAAGGAT+AGG | + | chr8.4:6575844-6575863 | MS.gene073277:intron | 30.0% | |
| GAAAGAAGAAAAAAAGTCGT+GGG | + | chr8.4:6577390-6577409 | MS.gene073277:intron | 30.0% | |
| GATATTATAATCACCCTTGT+CGG | + | chr8.4:6576047-6576066 | MS.gene073277:intron | 30.0% | |
| TACTTGGTTAATGTCTAATC+AGG | + | chr8.4:6575814-6575833 | MS.gene073277:intron | 30.0% | |
| TCCATTCCTAACAATGAAAA+TGG | - | chr8.4:6576508-6576527 | None:intergenic | 30.0% | |
| TGCCATTCAAAATAAAAGGA+GGG | - | chr8.4:6576300-6576319 | None:intergenic | 30.0% | |
| TGTCGTTAATCTATTACCAT+AGG | + | chr8.4:6576671-6576690 | MS.gene073277:intron | 30.0% | |
| TTATACAACTGAGAGTTTGA+AGG | - | chr8.4:6577039-6577058 | None:intergenic | 30.0% | |
| TTGCCATTCAAAATAAAAGG+AGG | - | chr8.4:6576301-6576320 | None:intergenic | 30.0% | |
| ! | AATGATTTGTGCCATATTTG+TGG | + | chr8.4:6577655-6577674 | MS.gene073277:intron | 30.0% |
| ! | AGTTTTTATCATATCCTCAC+TGG | + | chr8.4:6577811-6577830 | MS.gene073277:intron | 30.0% |
| ! | GATGAGAAAGCATAAAAAAG+TGG | - | chr8.4:6576143-6576162 | None:intergenic | 30.0% |
| ! | GTATGTTACCTTTTCTTTAC+GGG | + | chr8.4:6575755-6575774 | MS.gene073277:intron | 30.0% |
| ! | GTTTACCTGTTTCATGTTTT+GGG | - | chr8.4:6577100-6577119 | None:intergenic | 30.0% |
| ! | TATGGTTGACTTACTTGATT+TGG | - | chr8.4:6577774-6577793 | None:intergenic | 30.0% |
| ! | TCCATTTTCATTGTTAGGAA+TGG | + | chr8.4:6576504-6576523 | MS.gene073277:intron | 30.0% |
| ! | TGTTTACCTGTTTCATGTTT+TGG | - | chr8.4:6577101-6577120 | None:intergenic | 30.0% |
| ! | TTATAGTGTGAATTTTGTGG+TGG | - | chr8.4:6577013-6577032 | None:intergenic | 30.0% |
| ! | TTTAAGTTTGTACTTGACGA+TGG | + | chr8.4:6575558-6575577 | MS.gene073277:CDS | 30.0% |
| ! | TTTTGAATTTGACAGGGAAT+CGG | - | chr8.4:6577152-6577171 | None:intergenic | 30.0% |
| !!! | CCTTAATTTGTGTCATTTTC+AGG | + | chr8.4:6576745-6576764 | MS.gene073277:intron | 30.0% |
| !!! | TGACTTGGTGTTAGAATTTT+TGG | + | chr8.4:6577893-6577912 | MS.gene073277:CDS | 30.0% |
| AAAATTGCAGACTACAGATC+AGG | - | chr8.4:6575942-6575961 | None:intergenic | 35.0% | |
| AATATGTGATTGCATTGAGG+TGG | + | chr8.4:6576254-6576273 | MS.gene073277:intron | 35.0% | |
| AATTAGACATGCTAGGGTTA+GGG | + | chr8.4:6575237-6575256 | MS.gene073277:intron | 35.0% | |
| ACATAAATACATACCTCAGC+CGG | + | chr8.4:6577124-6577143 | MS.gene073277:intron | 35.0% | |
| AGCATGTCTAATTGATGTTG+CGG | - | chr8.4:6575230-6575249 | None:intergenic | 35.0% | |
| ATAAGTCCATGTCTTTAGGT+GGG | - | chr8.4:6577467-6577486 | None:intergenic | 35.0% | |
| ATCTCATTGAAGTCAGTAAC+GGG | - | chr8.4:6576771-6576790 | None:intergenic | 35.0% | |
| CAAAAACTCATCGTTCACAA+AGG | - | chr8.4:6575682-6575701 | None:intergenic | 35.0% | |
| CAACATCAATTAGACATGCT+AGG | + | chr8.4:6575230-6575249 | MS.gene073277:intron | 35.0% | |
| CAATCAAGTGATGATAGAAC+CGG | + | chr8.4:6575382-6575401 | MS.gene073277:CDS | 35.0% | |
| CATAAATGCACTCAAGGAAA+TGG | - | chr8.4:6576800-6576819 | None:intergenic | 35.0% | |
| CATTCAATCCCGTAAAGAAA+AGG | - | chr8.4:6575766-6575785 | None:intergenic | 35.0% | |
| CCATTCAAAATAAAAGGAGG+GGG | - | chr8.4:6576298-6576317 | None:intergenic | 35.0% | |
| CCTGAGAGAGAAAATACTTA+AGG | - | chr8.4:6576580-6576599 | None:intergenic | 35.0% | |
| CTGGACAGAATAAAATTGTG+AGG | - | chr8.4:6575490-6575509 | None:intergenic | 35.0% | |
| CTTCTCCATTCTTACAGATA+GGG | - | chr8.4:6576093-6576112 | None:intergenic | 35.0% | |
| GAACAATCGAGTGTACTAAA+TGG | + | chr8.4:6575586-6575605 | MS.gene073277:CDS | 35.0% | |
| GACTTAACAAACACCAAACA+TGG | + | chr8.4:6575890-6575909 | MS.gene073277:intron | 35.0% | |
| GATGAACATAAATGCACTCA+AGG | - | chr8.4:6576806-6576825 | None:intergenic | 35.0% | |
| GCCATTCAAAATAAAAGGAG+GGG | - | chr8.4:6576299-6576318 | None:intergenic | 35.0% | |
| GGAATGTATGTGCGTTTATA+TGG | + | chr8.4:6576525-6576544 | MS.gene073277:CDS | 35.0% | |
| GTGATAATATGTTGTACTGC+AGG | - | chr8.4:6577285-6577304 | None:intergenic | 35.0% | |
| TAATAAACCCAGACTCAGAT+AGG | + | chr8.4:6576895-6576914 | MS.gene073277:intron | 35.0% | |
| TATAAGTCCATGTCTTTAGG+TGG | - | chr8.4:6577468-6577487 | None:intergenic | 35.0% | |
| TCTTCTCCATTCTTACAGAT+AGG | - | chr8.4:6576094-6576113 | None:intergenic | 35.0% | |
| ! | AAGGTTTAGGGTTCAAATCT+TGG | - | chr8.4:6576365-6576384 | None:intergenic | 35.0% |
| ! | AGTATTTTCTCTCTCAGGTA+TGG | + | chr8.4:6576582-6576601 | MS.gene073277:intron | 35.0% |
| ! | ATGAGTTTTTGTCTACTTGC+AGG | + | chr8.4:6575691-6575710 | MS.gene073277:intron | 35.0% |
| ! | ATGCTAAAAACACTAGCCTA+TGG | - | chr8.4:6576690-6576709 | None:intergenic | 35.0% |
| ! | CCTTAAGTATTTTCTCTCTC+AGG | + | chr8.4:6576577-6576596 | MS.gene073277:CDS | 35.0% |
| ! | CTCACAATTTTATTCTGTCC+AGG | + | chr8.4:6575488-6575507 | MS.gene073277:intron | 35.0% |
| ! | CTGCTGCAGTAAATTGATTT+AGG | - | chr8.4:6577175-6577194 | None:intergenic | 35.0% |
| ! | GCTCTTTGTCTGATGTTTTA+TGG | - | chr8.4:6577587-6577606 | None:intergenic | 35.0% |
| ! | GGACAATTGAAAGGTTTTCA+TGG | + | chr8.4:6576546-6576565 | MS.gene073277:CDS | 35.0% |
| ! | GTCTGATGTTTTATGGTGTT+TGG | - | chr8.4:6577580-6577599 | None:intergenic | 35.0% |
| !! | AAAAGTCGTGGGTTTGTTAA+AGG | + | chr8.4:6577401-6577420 | MS.gene073277:intron | 35.0% |
| !! | ACTTACTTGATTTGGTGGAA+TGG | - | chr8.4:6577766-6577785 | None:intergenic | 35.0% |
| !! | ACTTTTTCTCTGTAGTTCTC+CGG | + | chr8.4:6577840-6577859 | MS.gene073277:intron | 35.0% |
| !! | GTTTGGTGTTTGTTAAGTCT+AGG | - | chr8.4:6575889-6575908 | None:intergenic | 35.0% |
| !! | TTGAGCTTGATAACCTTTTG+TGG | - | chr8.4:6577742-6577761 | None:intergenic | 35.0% |
| AACAAACACCAAACATGGCT+TGG | + | chr8.4:6575895-6575914 | MS.gene073277:intron | 40.0% | |
| AACACCGTCAATAGTAAGAC+CGG | - | chr8.4:6575404-6575423 | None:intergenic | 40.0% | |
| AACATCTTGCAAAGTCTGAC+AGG | - | chr8.4:6577247-6577266 | None:intergenic | 40.0% | |
| AAGTAAGGATAGGAATAGGC+TGG | + | chr8.4:6575854-6575873 | MS.gene073277:intron | 40.0% | |
| AGAACCGGTCTTACTATTGA+CGG | + | chr8.4:6575397-6575416 | MS.gene073277:CDS | 40.0% | |
| CAATTAGACATGCTAGGGTT+AGG | + | chr8.4:6575236-6575255 | MS.gene073277:intron | 40.0% | |
| CATCACTTGATTGAAGAGCA+TGG | - | chr8.4:6575375-6575394 | None:intergenic | 40.0% | |
| CTCATCCCTATCTGTAAGAA+TGG | + | chr8.4:6576085-6576104 | MS.gene073277:intron | 40.0% | |
| GATAGGGATGAGAATAAGTC+AGG | - | chr8.4:6576077-6576096 | None:intergenic | 40.0% | |
| GCAGTGCTTTGTATGGAATT+GGG | - | chr8.4:6577720-6577739 | None:intergenic | 40.0% | |
| TCATCTGCTAGCAAAACAAC+AGG | - | chr8.4:6576714-6576733 | None:intergenic | 40.0% | |
| TTGGAGATTTACTTTCAGCG+AGG | - | chr8.4:6576973-6576992 | None:intergenic | 40.0% | |
| TTTGTTAAGTCTAGGTCGGT+CGG | - | chr8.4:6575881-6575900 | None:intergenic | 40.0% | |
| ! | AGCCATGCAACGATTTTGTT+AGG | + | chr8.4:6576921-6576940 | MS.gene073277:intron | 40.0% |
| ! | AGGGGGCAACTACAATTTTA+CGG | - | chr8.4:6576281-6576300 | None:intergenic | 40.0% |
| ! | AGTGCTGGATCATGCTAATT+TGG | - | chr8.4:6577336-6577355 | None:intergenic | 40.0% |
| ! | AGTGTGAATTTTGTGGTGGT+TGG | - | chr8.4:6577009-6577028 | None:intergenic | 40.0% |
| ! | GGTGTTTGTTAAGTCTAGGT+CGG | - | chr8.4:6575885-6575904 | None:intergenic | 40.0% |
| ! | TGTTTTATGGTGTTTGGCCT+AGG | - | chr8.4:6577574-6577593 | None:intergenic | 40.0% |
| ! | TTTTGTGGCAGTGCTTTGTA+TGG | - | chr8.4:6577727-6577746 | None:intergenic | 40.0% |
| !! | ACCTGTTTCATGTTTTGGGT+TGG | - | chr8.4:6577096-6577115 | None:intergenic | 40.0% |
| !! | ATACAAAGCACTGCCACAAA+AGG | + | chr8.4:6577726-6577745 | MS.gene073277:CDS | 40.0% |
| !! | GAAAAAGTACTGAACCAGTG+AGG | - | chr8.4:6577828-6577847 | None:intergenic | 40.0% |
| !! | GGTTGACTTACTTGATTTGG+TGG | - | chr8.4:6577771-6577790 | None:intergenic | 40.0% |
| !! | GGTTGGTGGAAAAGTATCTT+TGG | - | chr8.4:6576992-6577011 | None:intergenic | 40.0% |
| !! | TCAGAAGAGTGTTCATGACT+TGG | + | chr8.4:6577878-6577897 | MS.gene073277:CDS | 40.0% |
| !!! | CCCCCTCCTTTTATTTTGAA+TGG | + | chr8.4:6576295-6576314 | MS.gene073277:intron | 40.0% |
| !!! | CCTGTTTCATGTTTTGGGTT+GGG | - | chr8.4:6577095-6577114 | None:intergenic | 40.0% |
| AATGCACTCAAGGAAATGGC+TGG | - | chr8.4:6576796-6576815 | None:intergenic | 45.0% | |
| ACATGCTAGGGTTAGGGTTT+AGG | + | chr8.4:6575243-6575262 | MS.gene073277:intron | 45.0% | |
| AGAACTGAGAAGAACCTTGG+AGG | - | chr8.4:6575177-6575196 | None:intergenic | 45.0% | |
| AGCTCACTTGGTTGAGCAAA+GGG | - | chr8.4:6576400-6576419 | None:intergenic | 45.0% | |
| ATAAGTCAGGCTAACCGACA+AGG | - | chr8.4:6576064-6576083 | None:intergenic | 45.0% | |
| ATATTTGTGGCAGCATACCC+AGG | + | chr8.4:6577668-6577687 | MS.gene073277:intron | 45.0% | |
| CATGCTAGGGTTAGGGTTTA+GGG | + | chr8.4:6575244-6575263 | MS.gene073277:intron | 45.0% | |
| CCAGGTTACTCTTGTTGGTA+GGG | + | chr8.4:6575506-6575525 | MS.gene073277:intron | 45.0% | |
| CCCAACCCAAAACATGAAAC+AGG | + | chr8.4:6577092-6577111 | MS.gene073277:intron | 45.0% | |
| CTGACCATTATTCTGCTGAC+CGG | - | chr8.4:6577862-6577881 | None:intergenic | 45.0% | |
| GAACTGAGAAGAACCTTGGA+GGG | - | chr8.4:6575176-6575195 | None:intergenic | 45.0% | |
| GGACTAACACTTCAAGGCAT+AGG | + | chr8.4:6575916-6575935 | MS.gene073277:intron | 45.0% | |
| GGCAGTGCTTTGTATGGAAT+TGG | - | chr8.4:6577721-6577740 | None:intergenic | 45.0% | |
| GGCCTAACAAAATCGTTGCA+TGG | - | chr8.4:6576926-6576945 | None:intergenic | 45.0% | |
| GGCTAATCCTATCTGAGTCT+GGG | - | chr8.4:6576905-6576924 | None:intergenic | 45.0% | |
| GGTAGGGTTTGCAACAAATC+TGG | + | chr8.4:6575522-6575541 | MS.gene073277:CDS | 45.0% | |
| GGTCTTACTATTGACGGTGT+TGG | + | chr8.4:6575403-6575422 | MS.gene073277:CDS | 45.0% | |
| GTGAGAACTGAGAAGAACCT+TGG | - | chr8.4:6575180-6575199 | None:intergenic | 45.0% | |
| GTGTTAGTCCAAGCCATGTT+TGG | - | chr8.4:6575906-6575925 | None:intergenic | 45.0% | |
| TAAGTCAGGCTAACCGACAA+GGG | - | chr8.4:6576063-6576082 | None:intergenic | 45.0% | |
| TAGCTCACTTGGTTGAGCAA+AGG | - | chr8.4:6576401-6576420 | None:intergenic | 45.0% | |
| TCCAGGTTACTCTTGTTGGT+AGG | + | chr8.4:6575505-6575524 | MS.gene073277:intron | 45.0% | |
| TCTGTCCAGGTTACTCTTGT+TGG | + | chr8.4:6575501-6575520 | MS.gene073277:intron | 45.0% | |
| TGGCTAATCCTATCTGAGTC+TGG | - | chr8.4:6576906-6576925 | None:intergenic | 45.0% | |
| TGGGTATGCTGCCACAAATA+TGG | - | chr8.4:6577669-6577688 | None:intergenic | 45.0% | |
| TTCTCCGGTCAGCAGAATAA+TGG | + | chr8.4:6577855-6577874 | MS.gene073277:CDS | 45.0% | |
| TTGATCTGCTTGATCGTCAG+CGG | - | chr8.4:6575352-6575371 | None:intergenic | 45.0% | |
| TTTGTACTTGACGATGGCAC+TGG | + | chr8.4:6575564-6575583 | MS.gene073277:CDS | 45.0% | |
| ! | ATTGGGAGCATGTTGCTGAT+TGG | - | chr8.4:6577703-6577722 | None:intergenic | 45.0% |
| ! | GGGGGCAACTACAATTTTAC+GGG | - | chr8.4:6576280-6576299 | None:intergenic | 45.0% |
| ! | GTGAATTTTGTGGTGGTTGG+TGG | - | chr8.4:6577006-6577025 | None:intergenic | 45.0% |
| ! | TGGCTTGGACTAACACTTCA+AGG | + | chr8.4:6575910-6575929 | MS.gene073277:intron | 45.0% |
| ! | TTGGGAGCATGTTGCTGATT+GGG | - | chr8.4:6577702-6577721 | None:intergenic | 45.0% |
| ACCAGAGGGGGTAACTAGTT+TGG | - | chr8.4:6576437-6576456 | None:intergenic | 50.0% | |
| AGAGGATTCACCGCCTTGAT+TGG | - | chr8.4:6575147-6575166 | None:intergenic | 50.0% | |
| ATGCCTTCTCAGGCCAATCA+AGG | + | chr8.4:6575131-6575150 | MS.gene073277:CDS | 50.0% | |
| ATTTGACAGGGAATCGGCAC+CGG | - | chr8.4:6577146-6577165 | None:intergenic | 50.0% | |
| CCCTACCAACAAGAGTAACC+TGG | - | chr8.4:6575509-6575528 | None:intergenic | 50.0% | |
| CGCAGTACTTTGCTTAGTGC+TGG | - | chr8.4:6577351-6577370 | None:intergenic | 50.0% | |
| TCACGAACCTGCTGATGCAA+TGG | + | chr8.4:6575716-6575735 | MS.gene073277:CDS | 50.0% | |
| TTGCAAAGTCTGACAGGCCA+AGG | - | chr8.4:6577241-6577260 | None:intergenic | 50.0% | |
| ! | AGGGGGTAACTAGTTTGGGA+GGG | - | chr8.4:6576432-6576451 | None:intergenic | 50.0% |
| ! | CCAGAGGGGGTAACTAGTTT+GGG | - | chr8.4:6576436-6576455 | None:intergenic | 50.0% |
| ! | TGGGAGCATGTTGCTGATTG+GGG | - | chr8.4:6577701-6577720 | None:intergenic | 50.0% |
| !! | GCACTAAGCAAAGTACTGCG+AGG | + | chr8.4:6577351-6577370 | MS.gene073277:intron | 50.0% |
| AACCTTGGAGGGAGTGAGAG+AGG | - | chr8.4:6575165-6575184 | None:intergenic | 55.0% | |
| ACCTGCTGATGCAATGGCAG+TGG | + | chr8.4:6575722-6575741 | MS.gene073277:CDS | 55.0% | |
| ATCCTCTCTCACTCCCTCCA+AGG | + | chr8.4:6575160-6575179 | MS.gene073277:CDS | 55.0% | |
| CCCAAACTAGTTACCCCCTC+TGG | + | chr8.4:6576433-6576452 | MS.gene073277:intron | 55.0% | |
| CCTTCTCAGGCCAATCAAGG+CGG | + | chr8.4:6575134-6575153 | MS.gene073277:CDS | 55.0% | |
| GCTGCACCCACCTAAAGACA+TGG | + | chr8.4:6577458-6577477 | MS.gene073277:intron | 55.0% | |
| TCCACTGCCATTGCATCAGC+AGG | - | chr8.4:6575726-6575745 | None:intergenic | 55.0% | |
| ! | AACTAGTTTGGGAGGGGGGA+GGG | - | chr8.4:6576425-6576444 | None:intergenic | 55.0% |
| ! | CTGATTGGGGATGCTAGCCT+GGG | - | chr8.4:6577688-6577707 | None:intergenic | 55.0% |
| ! | GAGGGGGTAACTAGTTTGGG+AGG | - | chr8.4:6576433-6576452 | None:intergenic | 55.0% |
| ! | GGGGGTAACTAGTTTGGGAG+GGG | - | chr8.4:6576431-6576450 | None:intergenic | 55.0% |
| ! | GGGGTAACTAGTTTGGGAGG+GGG | - | chr8.4:6576430-6576449 | None:intergenic | 55.0% |
| ! | GGGTAACTAGTTTGGGAGGG+GGG | - | chr8.4:6576429-6576448 | None:intergenic | 55.0% |
| ! | TAACTAGTTTGGGAGGGGGG+AGG | - | chr8.4:6576426-6576445 | None:intergenic | 55.0% |
| CGGCGGTTTCATGCCTTCTC+AGG | + | chr8.4:6575121-6575140 | MS.gene073277:CDS | 60.0% | |
| GCTGATTGGGGATGCTAGCC+TGG | - | chr8.4:6577689-6577708 | None:intergenic | 60.0% | |
| ! | ACTAGTTTGGGAGGGGGGAG+GGG | - | chr8.4:6576424-6576443 | None:intergenic | 60.0% |
| ! | AGAAGGCATGAAACCGCCGC+CGG | - | chr8.4:6575120-6575139 | None:intergenic | 60.0% |
| ! | GACGGTAACGCCGCTTTCTC+CGG | + | chr8.4:6575098-6575117 | MS.gene073277:CDS | 60.0% |
| !! | CCGCCTTGATTGGCCTGAGA+AGG | - | chr8.4:6575137-6575156 | None:intergenic | 60.0% |
| GAAACCGCCGCCGGAGAAAG+CGG | - | chr8.4:6575111-6575130 | None:intergenic | 65.0% | |
| ! | GGTAACGCCGCTTTCTCCGG+CGG | + | chr8.4:6575101-6575120 | MS.gene073277:CDS | 65.0% |
| GGGGGGAGGGGTAGCTCACT+TGG | - | chr8.4:6576412-6576431 | None:intergenic | 70.0% | |
| ! | AACGCCGCTTTCTCCGGCGG+CGG | + | chr8.4:6575104-6575123 | MS.gene073277:CDS | 70.0% |
| !! | CAGGGAATCGGCACCGGCTG+AGG | - | chr8.4:6577140-6577159 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 6575086 | 6577931 | 6575086 | ID=MS.gene073277 |
| chr8.4 | mRNA | 6575086 | 6577931 | 6575086 | ID=MS.gene073277.t1;Parent=MS.gene073277 |
| chr8.4 | exon | 6575086 | 6575181 | 6575086 | ID=MS.gene073277.t1.exon1;Parent=MS.gene073277.t1 |
| chr8.4 | CDS | 6575086 | 6575181 | 6575086 | ID=cds.MS.gene073277.t1;Parent=MS.gene073277.t1 |
| chr8.4 | exon | 6575325 | 6575435 | 6575325 | ID=MS.gene073277.t1.exon2;Parent=MS.gene073277.t1 |
| chr8.4 | CDS | 6575325 | 6575435 | 6575325 | ID=cds.MS.gene073277.t1;Parent=MS.gene073277.t1 |
| chr8.4 | exon | 6575510 | 6575607 | 6575510 | ID=MS.gene073277.t1.exon3;Parent=MS.gene073277.t1 |
| chr8.4 | CDS | 6575510 | 6575607 | 6575510 | ID=cds.MS.gene073277.t1;Parent=MS.gene073277.t1 |
| chr8.4 | exon | 6575713 | 6575754 | 6575713 | ID=MS.gene073277.t1.exon4;Parent=MS.gene073277.t1 |
| chr8.4 | CDS | 6575713 | 6575754 | 6575713 | ID=cds.MS.gene073277.t1;Parent=MS.gene073277.t1 |
| chr8.4 | exon | 6576521 | 6576598 | 6576521 | ID=MS.gene073277.t1.exon5;Parent=MS.gene073277.t1 |
| chr8.4 | CDS | 6576521 | 6576598 | 6576521 | ID=cds.MS.gene073277.t1;Parent=MS.gene073277.t1 |
| chr8.4 | exon | 6576767 | 6576845 | 6576767 | ID=MS.gene073277.t1.exon6;Parent=MS.gene073277.t1 |
| chr8.4 | CDS | 6576767 | 6576845 | 6576767 | ID=cds.MS.gene073277.t1;Parent=MS.gene073277.t1 |
| chr8.4 | exon | 6577681 | 6577779 | 6577681 | ID=MS.gene073277.t1.exon7;Parent=MS.gene073277.t1 |
| chr8.4 | CDS | 6577681 | 6577779 | 6577681 | ID=cds.MS.gene073277.t1;Parent=MS.gene073277.t1 |
| chr8.4 | exon | 6577855 | 6577931 | 6577855 | ID=MS.gene073277.t1.exon8;Parent=MS.gene073277.t1 |
| chr8.4 | CDS | 6577855 | 6577931 | 6577855 | ID=cds.MS.gene073277.t1;Parent=MS.gene073277.t1 |
| Gene Sequence |
| Protein sequence |
