Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073303.t1 | XP_003610071.2 | 96.6 | 739 | 24 | 1 | 1 | 739 | 1 | 738 | 0.00E+00 | 1351.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073303.t1 | Q93YU8 | 25.6 | 715 | 466 | 18 | 1 | 678 | 1 | 686 | 3.1e-27 | 125.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073303.t1 | G7JUC3 | 96.6 | 739 | 24 | 1 | 1 | 739 | 1 | 738 | 0.0e+00 | 1351.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene073303 | 0.833152 | 6.28E-56 | -1.69E-46 |
| MS.gene050297 | MS.gene073303 | 0.818515 | 1.88E-52 | -1.69E-46 |
| MS.gene051629 | MS.gene073303 | 0.807905 | 4.02E-50 | -1.69E-46 |
| MS.gene051955 | MS.gene073303 | 0.854961 | 8.68E-62 | -1.69E-46 |
| MS.gene052367 | MS.gene073303 | 0.819719 | 1.00E-52 | -1.69E-46 |
| MS.gene053348 | MS.gene073303 | 0.827344 | 1.65E-54 | -1.69E-46 |
| MS.gene055308 | MS.gene073303 | 0.823745 | 1.17E-53 | -1.69E-46 |
| MS.gene055411 | MS.gene073303 | 0.803492 | 3.40E-49 | -1.69E-46 |
| MS.gene055578 | MS.gene073303 | 0.826001 | 3.45E-54 | -1.69E-46 |
| MS.gene055579 | MS.gene073303 | 0.812859 | 3.43E-51 | -1.69E-46 |
| MS.gene055957 | MS.gene073303 | 0.835943 | 1.25E-56 | -1.69E-46 |
| MS.gene056041 | MS.gene073303 | 0.844341 | 8.03E-59 | -1.69E-46 |
| MS.gene056042 | MS.gene073303 | 0.820289 | 7.42E-53 | -1.69E-46 |
| MS.gene058196 | MS.gene073303 | 0.853059 | 3.07E-61 | -1.69E-46 |
| MS.gene058197 | MS.gene073303 | 0.838502 | 2.77E-57 | -1.69E-46 |
| MS.gene058198 | MS.gene073303 | 0.841406 | 4.85E-58 | -1.69E-46 |
| MS.gene058853 | MS.gene073303 | 0.807359 | 5.25E-50 | -1.69E-46 |
| MS.gene059300 | MS.gene073303 | 0.83712 | 6.27E-57 | -1.69E-46 |
| MS.gene060473 | MS.gene073303 | 0.85405 | 1.59E-61 | -1.69E-46 |
| MS.gene060565 | MS.gene073303 | 0.855765 | 5.06E-62 | -1.69E-46 |
| MS.gene06057 | MS.gene073303 | 0.81468 | 1.36E-51 | -1.69E-46 |
| MS.gene061099 | MS.gene073303 | 0.838778 | 2.35E-57 | -1.69E-46 |
| MS.gene061260 | MS.gene073303 | 0.848293 | 6.72E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073303.t1 | MTR_4g127620 | 97.023 | 739 | 21 | 1 | 1 | 739 | 1 | 738 | 0.0 | 1493 |
| MS.gene073303.t1 | MTR_2g036920 | 63.296 | 534 | 153 | 9 | 238 | 734 | 394 | 921 | 0.0 | 596 |
| MS.gene073303.t1 | MTR_2g036920 | 48.518 | 371 | 109 | 10 | 1 | 293 | 1 | 367 | 8.61e-87 | 293 |
| MS.gene073303.t1 | MTR_2g036920 | 63.296 | 534 | 153 | 9 | 238 | 734 | 365 | 892 | 0.0 | 596 |
| MS.gene073303.t1 | MTR_2g036920 | 52.632 | 342 | 109 | 9 | 1 | 293 | 1 | 338 | 1.08e-91 | 306 |
| MS.gene073303.t1 | MTR_5g087740 | 29.173 | 713 | 402 | 22 | 1 | 660 | 1 | 663 | 4.47e-67 | 236 |
| MS.gene073303.t1 | MTR_3g078830 | 28.630 | 730 | 400 | 23 | 1 | 660 | 1 | 679 | 2.61e-62 | 223 |
| MS.gene073303.t1 | MTR_8g091250 | 35.813 | 363 | 192 | 7 | 330 | 660 | 262 | 615 | 9.17e-56 | 203 |
| MS.gene073303.t1 | MTR_8g091250 | 36.290 | 124 | 74 | 2 | 1 | 119 | 1 | 124 | 9.15e-11 | 65.9 |
| MS.gene073303.t1 | MTR_5g098980 | 30.686 | 554 | 324 | 19 | 174 | 720 | 233 | 733 | 1.46e-50 | 189 |
| MS.gene073303.t1 | MTR_3g088190 | 33.528 | 343 | 194 | 6 | 337 | 660 | 455 | 782 | 3.53e-49 | 186 |
| MS.gene073303.t1 | MTR_1g112850 | 34.104 | 346 | 196 | 9 | 338 | 663 | 276 | 609 | 6.97e-49 | 184 |
| MS.gene073303.t1 | MTR_3g096950 | 27.938 | 519 | 273 | 20 | 174 | 673 | 234 | 670 | 1.31e-36 | 147 |
| MS.gene073303.t1 | MTR_5g022530 | 28.779 | 344 | 223 | 7 | 327 | 663 | 195 | 523 | 7.21e-34 | 138 |
| MS.gene073303.t1 | MTR_3g115120 | 26.897 | 435 | 242 | 11 | 338 | 725 | 277 | 682 | 8.04e-34 | 139 |
| MS.gene073303.t1 | MTR_3g109450 | 28.875 | 329 | 211 | 8 | 338 | 660 | 277 | 588 | 3.27e-33 | 137 |
| MS.gene073303.t1 | MTR_2g102050 | 28.701 | 331 | 213 | 6 | 336 | 660 | 320 | 633 | 4.19e-33 | 137 |
| MS.gene073303.t1 | MTR_2g102050 | 38.947 | 95 | 49 | 1 | 1 | 95 | 1 | 86 | 2.27e-11 | 67.8 |
| MS.gene073303.t1 | MTR_4g012430 | 29.326 | 341 | 204 | 10 | 333 | 663 | 120 | 433 | 1.25e-29 | 124 |
| MS.gene073303.t1 | MTR_2g048360 | 25.281 | 356 | 224 | 8 | 324 | 665 | 196 | 523 | 4.69e-27 | 117 |
| MS.gene073303.t1 | MTR_8g006850 | 28.571 | 273 | 177 | 5 | 331 | 597 | 272 | 532 | 3.52e-24 | 108 |
| MS.gene073303.t1 | MTR_7g081705 | 34.483 | 174 | 107 | 2 | 424 | 597 | 492 | 658 | 7.15e-24 | 108 |
| MS.gene073303.t1 | MTR_1g107440 | 53.247 | 77 | 36 | 0 | 421 | 497 | 5 | 81 | 1.22e-21 | 90.9 |
| MS.gene073303.t1 | MTR_4g094688 | 41.837 | 98 | 54 | 1 | 422 | 519 | 923 | 1017 | 7.12e-13 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073303.t1 | AT4G30130 | 50.588 | 765 | 291 | 20 | 1 | 727 | 1 | 716 | 0.0 | 632 |
| MS.gene073303.t1 | AT4G30130 | 50.588 | 765 | 291 | 20 | 1 | 727 | 1 | 716 | 0.0 | 632 |
| MS.gene073303.t1 | AT2G19090 | 49.322 | 811 | 311 | 23 | 1 | 725 | 1 | 797 | 0.0 | 625 |
| MS.gene073303.t1 | AT4G30130 | 51.769 | 537 | 200 | 15 | 1 | 519 | 1 | 496 | 4.44e-142 | 428 |
| MS.gene073303.t1 | AT4G30130 | 51.769 | 537 | 200 | 15 | 1 | 519 | 1 | 496 | 4.44e-142 | 428 |
| MS.gene073303.t1 | AT2G27090 | 27.020 | 792 | 436 | 22 | 1 | 722 | 1 | 720 | 8.08e-64 | 227 |
| MS.gene073303.t1 | AT2G27090 | 27.020 | 792 | 436 | 22 | 1 | 722 | 1 | 720 | 8.08e-64 | 227 |
| MS.gene073303.t1 | AT2G17110 | 26.362 | 789 | 450 | 19 | 1 | 727 | 1 | 720 | 1.81e-60 | 217 |
| MS.gene073303.t1 | AT4G35240 | 30.835 | 587 | 332 | 16 | 104 | 659 | 193 | 736 | 1.93e-59 | 216 |
| MS.gene073303.t1 | AT4G35240 | 30.835 | 587 | 332 | 16 | 104 | 659 | 193 | 736 | 1.93e-59 | 216 |
| MS.gene073303.t1 | AT4G35240 | 30.730 | 589 | 334 | 16 | 102 | 659 | 191 | 736 | 2.24e-59 | 216 |
| MS.gene073303.t1 | AT4G35240 | 30.730 | 589 | 334 | 16 | 102 | 659 | 191 | 736 | 2.24e-59 | 216 |
| MS.gene073303.t1 | AT1G77500 | 29.887 | 619 | 347 | 20 | 176 | 738 | 256 | 843 | 1.76e-57 | 211 |
| MS.gene073303.t1 | AT1G21740 | 33.705 | 359 | 214 | 8 | 314 | 660 | 477 | 823 | 1.22e-51 | 194 |
| MS.gene073303.t1 | AT4G39790 | 32.222 | 450 | 222 | 11 | 330 | 739 | 245 | 651 | 3.00e-50 | 187 |
| MS.gene073303.t1 | AT1G20530 | 30.273 | 403 | 241 | 12 | 336 | 722 | 231 | 609 | 2.53e-38 | 151 |
| MS.gene073303.t1 | AT3G51290 | 30.084 | 359 | 212 | 11 | 327 | 670 | 191 | 525 | 1.14e-36 | 147 |
| MS.gene073303.t1 | AT3G51290 | 30.084 | 359 | 212 | 11 | 327 | 670 | 191 | 525 | 1.51e-36 | 147 |
| MS.gene073303.t1 | AT3G51290 | 29.248 | 359 | 209 | 12 | 327 | 670 | 191 | 519 | 4.06e-32 | 133 |
| MS.gene073303.t1 | AT1G52320 | 29.586 | 338 | 215 | 9 | 337 | 668 | 24 | 344 | 5.50e-32 | 130 |
| MS.gene073303.t1 | AT1G52320 | 29.586 | 338 | 215 | 9 | 337 | 668 | 24 | 344 | 5.50e-32 | 130 |
| MS.gene073303.t1 | AT1G52320 | 29.290 | 338 | 216 | 8 | 337 | 668 | 327 | 647 | 9.03e-32 | 132 |
| MS.gene073303.t1 | AT1G52320 | 29.290 | 338 | 216 | 8 | 337 | 668 | 350 | 670 | 9.94e-32 | 132 |
| MS.gene073303.t1 | AT1G52320 | 29.290 | 338 | 216 | 8 | 337 | 668 | 350 | 670 | 9.94e-32 | 132 |
| MS.gene073303.t1 | AT5G25590 | 28.788 | 330 | 212 | 6 | 337 | 660 | 330 | 642 | 4.10e-31 | 130 |
| MS.gene073303.t1 | AT5G25590 | 56.364 | 55 | 24 | 0 | 1 | 55 | 1 | 55 | 7.46e-11 | 66.2 |
| MS.gene073303.t1 | AT5G54480 | 26.586 | 331 | 192 | 9 | 352 | 670 | 336 | 627 | 3.47e-29 | 124 |
| MS.gene073303.t1 | AT3G60320 | 31.907 | 257 | 161 | 4 | 424 | 678 | 442 | 686 | 8.96e-28 | 120 |
| MS.gene073303.t1 | AT1G02110 | 29.755 | 326 | 196 | 8 | 334 | 649 | 268 | 570 | 1.12e-26 | 116 |
| MS.gene073303.t1 | AT2G34670 | 29.918 | 244 | 156 | 4 | 421 | 663 | 334 | 563 | 7.74e-21 | 98.2 |
| MS.gene073303.t1 | AT2G34670 | 28.926 | 242 | 157 | 4 | 421 | 661 | 334 | 561 | 5.12e-19 | 92.0 |
Find 160 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCGATTGCAATTTCTTTA+TGG | 0.119576 | 8.1:+5208998 | None:intergenic |
| GGAGGAGTTTACATCAATTT+TGG | 0.191505 | 8.1:+5209188 | None:intergenic |
| TCCCCTTCTAACGAACTTTC+AGG | 0.200168 | 8.1:-5208811 | MS.gene073303:intron |
| CTTCTCAATGGGATTCCTTT+TGG | 0.207462 | 8.1:-5209401 | MS.gene073303:CDS |
| TTCAACCATGACTTCTTCTT+TGG | 0.230776 | 8.1:+5209167 | None:intergenic |
| GTCTCAACTCGAACCATTTC+GGG | 0.235236 | 8.1:+5209549 | None:intergenic |
| CATCCATTTCTTCCTGTTCC+AGG | 0.241920 | 8.1:+5209259 | None:intergenic |
| ACTTTCAAAGTTGTAGTATT+AGG | 0.290954 | 8.1:+5209630 | None:intergenic |
| GGATAAGTATTGAGCTTTCT+TGG | 0.292019 | 8.1:+5208831 | None:intergenic |
| TGTCTCAACTCGAACCATTT+CGG | 0.297245 | 8.1:+5209548 | None:intergenic |
| ATGTTTGCTTCTGTGTTTGA+TGG | 0.306022 | 8.1:+5207351 | None:intergenic |
| AAACCGAAGGCCGGCAAATA+TGG | 0.311425 | 8.1:-5208932 | MS.gene073303:CDS |
| ATTATTATACCTTGACTTCC+TGG | 0.317166 | 8.1:+5208362 | None:intergenic |
| TTGCTTATTCTCCGAATAAC+AGG | 0.324117 | 8.1:-5209452 | MS.gene073303:CDS |
| TCTTAACTGTTGTGCATAGA+AGG | 0.324661 | 8.1:+5206968 | None:intergenic |
| TCTCCAACAACAATTGAGTT+TGG | 0.325353 | 8.1:-5209654 | MS.gene073303:CDS |
| ATCACTTCAGCCATATTTGC+CGG | 0.325423 | 8.1:+5208922 | None:intergenic |
| TGTTCAAGGCTACTTCCATT+AGG | 0.329746 | 8.1:+5209345 | None:intergenic |
| GGTTGGATCCAATGTGAATA+TGG | 0.334000 | 8.1:-5206922 | MS.gene073303:CDS |
| CTGAGGAACCATGATATAAA+AGG | 0.335201 | 8.1:-5208097 | MS.gene073303:CDS |
| TTTACATCGTTGGACTATTT+CGG | 0.335436 | 8.1:-5209372 | MS.gene073303:CDS |
| CCTCAATTCGGTTTCAAGAT+TGG | 0.336991 | 8.1:+5207235 | None:intergenic |
| AAATAGTCCAACGATGTAAA+AGG | 0.338971 | 8.1:+5209375 | None:intergenic |
| AGTTATGGAGGTTGCTGTTA+AGG | 0.351789 | 8.1:-5206868 | MS.gene073303:CDS |
| ATTTCTTCCTGTTCCAGGTC+TGG | 0.356927 | 8.1:+5209264 | None:intergenic |
| GACTATTTCGGTTACCCTAA+TGG | 0.364273 | 8.1:-5209360 | MS.gene073303:CDS |
| AGCTCTACTCACCCGTTGTT+TGG | 0.365593 | 8.1:-5207080 | MS.gene073303:CDS |
| TCCTACATTCACGCACTAAC+TGG | 0.370767 | 8.1:-5207170 | MS.gene073303:CDS |
| ATCTCAATCTTCAGGTCATA+TGG | 0.371693 | 8.1:-5209028 | MS.gene073303:CDS |
| GTATCAAAATCTCAATCTTC+AGG | 0.371875 | 8.1:-5209036 | MS.gene073303:CDS |
| GCTGAGCGTGCGAGCCTGTA+TGG | 0.385690 | 8.1:+5207260 | None:intergenic |
| GTTCAAGGCTACTTCCATTA+GGG | 0.385955 | 8.1:+5209346 | None:intergenic |
| CAGCCATATTTGCCGGCCTT+CGG | 0.400928 | 8.1:+5208929 | None:intergenic |
| AAATATGGCTGAAGTGATAA+AGG | 0.406334 | 8.1:-5208917 | MS.gene073303:CDS |
| GGGATAACAGGCCTGTTATT+CGG | 0.406743 | 8.1:+5209441 | None:intergenic |
| TAGCCTTGAACATATTGTTA+TGG | 0.408133 | 8.1:-5209334 | MS.gene073303:CDS |
| TATTCTCCAGTGTACCAATA+TGG | 0.409306 | 8.1:-5209525 | MS.gene073303:CDS |
| GGCCTTTCCTCGACTGAAAT+CGG | 0.409761 | 8.1:+5209579 | None:intergenic |
| TGATGTCTCGGCATTGTTAG+AGG | 0.410848 | 8.1:-5208854 | MS.gene073303:CDS |
| AACCATGACTTCTTCTTTGG+AGG | 0.411358 | 8.1:+5209170 | None:intergenic |
| AAACCTGAAAGTTCGTTAGA+AGG | 0.412814 | 8.1:+5208808 | None:intergenic |
| CAGGAGAATTGAAACCTTGA+GGG | 0.413268 | 8.1:-5207981 | MS.gene073303:CDS |
| AAGCACCGCTGTTTCTTGTA+AGG | 0.413962 | 8.1:+5207025 | None:intergenic |
| ACTCAGTTGAAGCTATTTCC+AGG | 0.415086 | 8.1:-5208000 | MS.gene073303:CDS |
| TTCACCTCAGTCTTCTCAAT+GGG | 0.421196 | 8.1:-5209412 | MS.gene073303:CDS |
| GCCTTTGTGTTCAGTGGTCA+AGG | 0.423465 | 8.1:-5207058 | MS.gene073303:CDS |
| GGTGAAGCGGGAGGGATAAC+AGG | 0.425517 | 8.1:+5209429 | None:intergenic |
| CTCGAACCTTCCTCAGTCCT+CGG | 0.435717 | 8.1:+5209301 | None:intergenic |
| AGACCTGGAACAGGAAGAAA+TGG | 0.440144 | 8.1:-5209262 | MS.gene073303:CDS |
| AAGGCCTCCGTCACCCGAAA+TGG | 0.442461 | 8.1:-5209562 | MS.gene073303:CDS |
| AACAGTCAGGAACACGTGTT+CGG | 0.454457 | 8.1:-5208147 | MS.gene073303:intron |
| TAAGGTTGGAGAAGAAGTTA+TGG | 0.455241 | 8.1:-5206883 | MS.gene073303:CDS |
| CTTTGAAAGTGAATTATTTG+AGG | 0.455442 | 8.1:-5209617 | MS.gene073303:CDS |
| CCTCAAGGTTTCAATTCTCC+TGG | 0.457406 | 8.1:+5207982 | None:intergenic |
| CAATGAACTTGTTAAACAAT+GGG | 0.462956 | 8.1:-5206775 | MS.gene073303:CDS |
| CATCCATAACAATATGTTCA+AGG | 0.464818 | 8.1:+5209331 | None:intergenic |
| GTTTCGCCAGTTCCTCAATT+CGG | 0.465546 | 8.1:+5207223 | None:intergenic |
| TTGAAACCGAATTGAGGAAC+TGG | 0.469607 | 8.1:-5207229 | MS.gene073303:CDS |
| AACCTGAAAGTTCGTTAGAA+GGG | 0.470672 | 8.1:+5208809 | None:intergenic |
| GAACACAAAGGCCAAACAAC+GGG | 0.472307 | 8.1:+5207069 | None:intergenic |
| CTTGCAGCAATTCAAGAAGC+TGG | 0.472323 | 8.1:+5207942 | None:intergenic |
| CATAGAACTCAGTTTGCAAA+TGG | 0.474598 | 8.1:-5209837 | MS.gene073303:CDS |
| ATGGTGGAAGTTGCTAAGGT+TGG | 0.479385 | 8.1:-5206897 | MS.gene073303:CDS |
| CAATTCGGTTTCAAGATTGG+AGG | 0.479544 | 8.1:+5207238 | None:intergenic |
| TAACAATGCCGAGACATCAT+TGG | 0.485532 | 8.1:+5208858 | None:intergenic |
| GGTCCAAACTCAATTGTTGT+TGG | 0.486319 | 8.1:+5209651 | None:intergenic |
| CACCATTTCCATATTCACAT+TGG | 0.488738 | 8.1:+5206914 | None:intergenic |
| TGAAGATGTTGATAAACATA+AGG | 0.490879 | 8.1:-5209148 | MS.gene073303:CDS |
| AGGAAGGTTCGAGAAGAAGA+AGG | 0.490909 | 8.1:-5209291 | MS.gene073303:CDS |
| AGGGATACCAGACCTGGAAC+AGG | 0.500194 | 8.1:-5209271 | MS.gene073303:CDS |
| ATCCAATGTGAATATGGAAA+TGG | 0.501370 | 8.1:-5206916 | MS.gene073303:CDS |
| CTTCACCTCAGTCTTCTCAA+TGG | 0.501893 | 8.1:-5209413 | MS.gene073303:CDS |
| TGAGAAGACTGAGGTGAAGC+GGG | 0.502167 | 8.1:+5209417 | None:intergenic |
| AATGCCGGCTATAAGAATCT+TGG | 0.502528 | 8.1:+5207319 | None:intergenic |
| CATATTAACTTAGATGCATC+GGG | 0.502954 | 8.1:+5207119 | None:intergenic |
| TAAGGAGGAAGAGAAAGAGA+AGG | 0.504381 | 8.1:-5209130 | MS.gene073303:CDS |
| GGACTAGCTTTGTTCTTCGC+AGG | 0.505237 | 8.1:+5209708 | None:intergenic |
| CTAGCTTTGTTCTTCGCAGG+TGG | 0.510885 | 8.1:+5209711 | None:intergenic |
| AAGTTCATTGTATCCCTTAG+CGG | 0.512351 | 8.1:+5206788 | None:intergenic |
| ATATCAGACTCGAAAATCAA+TGG | 0.514821 | 8.1:-5209075 | MS.gene073303:CDS |
| CCAGGAGAATTGAAACCTTG+AGG | 0.523014 | 8.1:-5207982 | MS.gene073303:CDS |
| GCATATTAACTTAGATGCAT+CGG | 0.523698 | 8.1:+5207118 | None:intergenic |
| ACATTCACGCACTAACTGGC+TGG | 0.524842 | 8.1:-5207166 | MS.gene073303:CDS |
| TCCAGTGTACCAATATGGTA+TGG | 0.525140 | 8.1:-5209520 | MS.gene073303:CDS |
| TCTGCACAAAATACAACGGT+TGG | 0.528872 | 8.1:-5206939 | MS.gene073303:CDS |
| GGTTGGAGAAGAAGTTATGG+AGG | 0.530749 | 8.1:-5206880 | MS.gene073303:CDS |
| CGTCGATAACTGATCCATAC+AGG | 0.532942 | 8.1:-5207274 | MS.gene073303:CDS |
| GTCACCAGTCAACATTAGAC+AGG | 0.533014 | 8.1:-5208411 | MS.gene073303:CDS |
| GTTTGCTATTGACTCCGCTA+AGG | 0.535922 | 8.1:-5206802 | MS.gene073303:CDS |
| AACACACAATGTTCCTCTGA+TGG | 0.538021 | 8.1:+5208442 | None:intergenic |
| ATGGGAGAAGAAGCTCTACC+AGG | 0.538736 | 8.1:-5208380 | MS.gene073303:CDS |
| TTCAATATCGAAATGACTGC+AGG | 0.539457 | 8.1:+5209687 | None:intergenic |
| CCAATCTTGAAACCGAATTG+AGG | 0.541596 | 8.1:-5207235 | MS.gene073303:CDS |
| ACAATGAACTTGTTAAACAA+TGG | 0.543788 | 8.1:-5206776 | MS.gene073303:CDS |
| TGAGTAGAGCTAGACCTTCG+AGG | 0.546467 | 8.1:+5207092 | None:intergenic |
| AAATTGACGCATTCATAGGC+GGG | 0.548064 | 8.1:+5209475 | None:intergenic |
| AGCTTCTTGAATTGCTGCAA+GGG | 0.552648 | 8.1:-5207940 | MS.gene073303:intron |
| CAATGCAGCCAATGATGTCT+CGG | 0.552658 | 8.1:-5208866 | MS.gene073303:CDS |
| CTCCTCCAAAGAAGAAGTCA+TGG | 0.553434 | 8.1:-5209172 | MS.gene073303:CDS |
| GTGCAACTCTTCATCCCTCA+AGG | 0.556618 | 8.1:+5207967 | None:intergenic |
| GAAGCTCTACCAGGAAGTCA+AGG | 0.559948 | 8.1:-5208371 | MS.gene073303:intron |
| CAGCTTCTTGAATTGCTGCA+AGG | 0.560120 | 8.1:-5207941 | MS.gene073303:CDS |
| GTGTACCAATATGGTATGGA+TGG | 0.560668 | 8.1:-5209516 | MS.gene073303:CDS |
| CATTAGACAGGTTATATGCA+TGG | 0.561365 | 8.1:-5208399 | MS.gene073303:CDS |
| AGCAAAGATGTGGAAGGTGA+TGG | 0.562210 | 8.1:-5207381 | MS.gene073303:CDS |
| CGATGTAAAAGGATTCCAAA+AGG | 0.564604 | 8.1:+5209386 | None:intergenic |
| TTTGCTATTGACTCCGCTAA+GGG | 0.566353 | 8.1:-5206801 | MS.gene073303:CDS |
| TCCATACCATATTGGTACAC+TGG | 0.567008 | 8.1:+5209519 | None:intergenic |
| ATAACCTGTCTAATGTTGAC+TGG | 0.569071 | 8.1:+5208407 | None:intergenic |
| GCCAGTTAGTGCGTGAATGT+AGG | 0.569376 | 8.1:+5207169 | None:intergenic |
| AATCGATACTGAAGAAGCTA+AGG | 0.570210 | 8.1:-5208983 | MS.gene073303:CDS |
| CAATGTGAATATGGAAATGG+TGG | 0.572421 | 8.1:-5206913 | MS.gene073303:CDS |
| AGAAGAAATGTCTGCAACTG+AGG | 0.574182 | 8.1:-5208114 | MS.gene073303:CDS |
| TGTTTATGTAAACCGAAGGC+CGG | 0.574887 | 8.1:-5208941 | MS.gene073303:CDS |
| ACCTGAAAGTTCGTTAGAAG+GGG | 0.575261 | 8.1:+5208810 | None:intergenic |
| GCTGTTAAGGTACTCTGTGG+TGG | 0.576480 | 8.1:-5206855 | MS.gene073303:CDS |
| TTGCAGCAATTCAAGAAGCT+GGG | 0.577105 | 8.1:+5207943 | None:intergenic |
| CACCGATTTCAGTCGAGGAA+AGG | 0.578232 | 8.1:-5209581 | MS.gene073303:CDS |
| GGAAATGGTGGAAGTTGCTA+AGG | 0.578471 | 8.1:-5206901 | MS.gene073303:CDS |
| ACTCGAACCATTTCGGGTGA+CGG | 0.580259 | 8.1:+5209555 | None:intergenic |
| ATTAGACAGGTTATATGCAT+GGG | 0.580876 | 8.1:-5208398 | MS.gene073303:CDS |
| AGTTAATATGCTCTCCTCGA+AGG | 0.586136 | 8.1:-5207106 | MS.gene073303:CDS |
| TTGAGAAGACTGAGGTGAAG+CGG | 0.590773 | 8.1:+5209416 | None:intergenic |
| TTACTGTTTATGTAAACCGA+AGG | 0.590995 | 8.1:-5208945 | MS.gene073303:CDS |
| GTCAAGTGCTATGAGCTCAA+TGG | 0.592133 | 8.1:-5206829 | MS.gene073303:CDS |
| GGAAGGTTCGAGAAGAAGAA+GGG | 0.594553 | 8.1:-5209290 | MS.gene073303:CDS |
| TGAGAACCGAGGACTGAGGA+AGG | 0.596815 | 8.1:-5209307 | MS.gene073303:CDS |
| AGATGTTGATAAACATAAGG+AGG | 0.598207 | 8.1:-5209145 | MS.gene073303:CDS |
| TCAAACACAGAAGCAAACAT+TGG | 0.599348 | 8.1:-5207348 | MS.gene073303:CDS |
| GAAATCGGTGGATTACCACT+TGG | 0.601145 | 8.1:+5209594 | None:intergenic |
| AAGGAGGAAGAGAAAGAGAA+GGG | 0.601204 | 8.1:-5209129 | MS.gene073303:CDS |
| TGTTTGGCCTTTGTGTTCAG+TGG | 0.601455 | 8.1:-5207064 | MS.gene073303:CDS |
| AATTGACGCATTCATAGGCG+GGG | 0.602603 | 8.1:+5209476 | None:intergenic |
| GTGAATTATTTGAGGCCAAG+TGG | 0.603881 | 8.1:-5209609 | MS.gene073303:CDS |
| AGGAGAGGAACCTTCGTCTG+TGG | 0.604715 | 8.1:-5208077 | MS.gene073303:CDS |
| AAGACTGAGGTGAAGCGGGA+GGG | 0.614600 | 8.1:+5209421 | None:intergenic |
| GAACCATGATATAAAAGGAG+AGG | 0.617114 | 8.1:-5208092 | MS.gene073303:CDS |
| GAAGCCAAGATTCTTATAGC+CGG | 0.625185 | 8.1:-5207323 | MS.gene073303:CDS |
| AAAATTGACGCATTCATAGG+CGG | 0.627932 | 8.1:+5209474 | None:intergenic |
| GAAGACTGAGGTGAAGCGGG+AGG | 0.628225 | 8.1:+5209420 | None:intergenic |
| AGAAGAAGGGATACCAGACC+TGG | 0.631503 | 8.1:-5209277 | MS.gene073303:CDS |
| GAAATGGATGATGAACAAGA+AGG | 0.633351 | 8.1:-5209246 | MS.gene073303:CDS |
| ACTACAGGCTAGCAAAGATG+TGG | 0.637551 | 8.1:-5207391 | MS.gene073303:intron |
| TAATCCACCGATTTCAGTCG+AGG | 0.639398 | 8.1:-5209586 | MS.gene073303:CDS |
| CAGGCTAGCAAAGATGTGGA+AGG | 0.650745 | 8.1:-5207387 | MS.gene073303:CDS |
| CTTTCCTCGACTGAAATCGG+TGG | 0.660282 | 8.1:+5209582 | None:intergenic |
| TGAACACAAAGGCCAAACAA+CGG | 0.660372 | 8.1:+5207068 | None:intergenic |
| GAAGCTAAGGAAGAAACACC+TGG | 0.678158 | 8.1:-5208970 | MS.gene073303:CDS |
| AGTTTATGATGATCCATCAG+AGG | 0.678961 | 8.1:-5208455 | MS.gene073303:CDS |
| CGAACCATTTCGGGTGACGG+AGG | 0.683013 | 8.1:+5209558 | None:intergenic |
| TTTACATAAACAGTAAAACC+AGG | 0.706181 | 8.1:+5208952 | None:intergenic |
| GAATCCCATTGAGAAGACTG+AGG | 0.719517 | 8.1:+5209408 | None:intergenic |
| GTTGCTGTTAAGGTACTCTG+TGG | 0.721032 | 8.1:-5206858 | MS.gene073303:CDS |
| GTTATGGATGATGAGAACCG+AGG | 0.728243 | 8.1:-5209318 | MS.gene073303:CDS |
| AGATGCCTTACAAGAAACAG+CGG | 0.730541 | 8.1:-5207030 | MS.gene073303:CDS |
| TCAGACTCGAAAATCAATGG+CGG | 0.731467 | 8.1:-5209072 | MS.gene073303:CDS |
| AGATTCTGCACAAAATACAA+CGG | 0.732120 | 8.1:-5206943 | MS.gene073303:CDS |
| ATGATGAGAACCGAGGACTG+AGG | 0.737190 | 8.1:-5209311 | MS.gene073303:CDS |
| GCCTTGACCACTGAACACAA+AGG | 0.740438 | 8.1:+5207057 | None:intergenic |
| GAAGTTGCAGCAAAATTGTG+AGG | 0.741434 | 8.1:-5206745 | MS.gene073303:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCATACTATATTAATAAT+AGG | - | chr8.1:5208458-5208477 | MS.gene073303:CDS | 10.0% |
| !!! | AAATTTGTTATAATTTTTGA+CGG | + | chr8.1:5208165-5208184 | None:intergenic | 10.0% |
| !!! | AAAATATACTGTGTTTTTAA+CGG | - | chr8.1:5209142-5209161 | MS.gene073303:CDS | 15.0% |
| !!! | AACAAATTTTTCAAAAACTA+GGG | - | chr8.1:5208176-5208195 | MS.gene073303:intron | 15.0% |
| !!! | AATTTGTTATAATTTTTGAC+GGG | + | chr8.1:5208164-5208183 | None:intergenic | 15.0% |
| !!! | TAACAAATTTTTCAAAAACT+AGG | - | chr8.1:5208175-5208194 | MS.gene073303:intron | 15.0% |
| !!! | TGATTATTTTAAAGAAAATG+AGG | - | chr8.1:5206892-5206911 | MS.gene073303:CDS | 15.0% |
| !! | ATAAATTCAATTGTTGAAGT+TGG | + | chr8.1:5208375-5208394 | None:intergenic | 20.0% |
| !! | TAAGATATATCACACTATAT+TGG | - | chr8.1:5209200-5209219 | MS.gene073303:CDS | 20.0% |
| !! | TAGAATACATAGCATTAATT+GGG | - | chr8.1:5208957-5208976 | MS.gene073303:CDS | 20.0% |
| !! | TTAGAATACATAGCATTAAT+TGG | - | chr8.1:5208956-5208975 | MS.gene073303:CDS | 20.0% |
| !!! | ATGGGTTAAAAATAACATAA+AGG | + | chr8.1:5208811-5208830 | None:intergenic | 20.0% |
| !!! | ATTTGTTATAATTTTTGACG+GGG | + | chr8.1:5208163-5208182 | None:intergenic | 20.0% |
| ! | AAATAGGTATATAACCTTCT+AGG | + | chr8.1:5209023-5209042 | None:intergenic | 25.0% |
| ! | AATAGGTATATAACCTTCTA+GGG | + | chr8.1:5209022-5209041 | None:intergenic | 25.0% |
| ! | ACTTTCAAAGTTGTAGTATT+AGG | + | chr8.1:5207031-5207050 | None:intergenic | 25.0% |
| ! | AGAATACATAGCATTAATTG+GGG | - | chr8.1:5208958-5208977 | MS.gene073303:CDS | 25.0% |
| ! | TCGAAAAAGATTCATAAAAG+AGG | - | chr8.1:5206790-5206809 | MS.gene073303:CDS | 25.0% |
| ! | TTTACATAAACAGTAAAACC+AGG | + | chr8.1:5207709-5207728 | None:intergenic | 25.0% |
| !! | ACGTTTTTAATATGAAGTGT+CGG | + | chr8.1:5208853-5208872 | None:intergenic | 25.0% |
| !! | AGAAGGTTATATACCTATTT+TGG | - | chr8.1:5209023-5209042 | MS.gene073303:CDS | 25.0% |
| !! | CTTTGAAAGTGAATTATTTG+AGG | - | chr8.1:5207041-5207060 | MS.gene073303:CDS | 25.0% |
| !! | TATCGATTGCAATTTCTTTA+TGG | + | chr8.1:5207663-5207682 | None:intergenic | 25.0% |
| !! | TGAAGATGTTGATAAACATA+AGG | - | chr8.1:5207510-5207529 | MS.gene073303:intron | 25.0% |
| !!! | ACAATGAACTTGTTAAACAA+TGG | - | chr8.1:5209882-5209901 | MS.gene073303:CDS | 25.0% |
| !!! | ATCAATTTTGGTTCTTTCTT+CGG | + | chr8.1:5207461-5207480 | None:intergenic | 25.0% |
| !!! | CAATGAACTTGTTAAACAAT+GGG | - | chr8.1:5209883-5209902 | MS.gene073303:CDS | 25.0% |
| !!! | TCTTGTTTCTGATTTTTACA+TGG | - | chr8.1:5209119-5209138 | MS.gene073303:CDS | 25.0% |
| AAAAACCATCCATACCATAT+TGG | + | chr8.1:5207150-5207169 | None:intergenic | 30.0% | |
| AAATAGTCCAACGATGTAAA+AGG | + | chr8.1:5207286-5207305 | None:intergenic | 30.0% | |
| AAATATGGCTGAAGTGATAA+AGG | - | chr8.1:5207741-5207760 | MS.gene073303:intron | 30.0% | |
| AGATTCTGCACAAAATACAA+CGG | - | chr8.1:5209715-5209734 | MS.gene073303:CDS | 30.0% | |
| AGTGTGTTAGAAATTTGAAG+GGG | + | chr8.1:5208779-5208798 | None:intergenic | 30.0% | |
| ATATCAGACTCGAAAATCAA+TGG | - | chr8.1:5207583-5207602 | MS.gene073303:intron | 30.0% | |
| ATCCAATGTGAATATGGAAA+TGG | - | chr8.1:5209742-5209761 | MS.gene073303:CDS | 30.0% | |
| ATCTGACACATATTGGAATT+TGG | - | chr8.1:5208880-5208899 | MS.gene073303:CDS | 30.0% | |
| ATTAGACAGGTTATATGCAT+GGG | - | chr8.1:5208260-5208279 | MS.gene073303:intron | 30.0% | |
| ATTATTATACCTTGACTTCC+TGG | + | chr8.1:5208299-5208318 | None:intergenic | 30.0% | |
| CAGTGTGTTAGAAATTTGAA+GGG | + | chr8.1:5208780-5208799 | None:intergenic | 30.0% | |
| CATATTAACTTAGATGCATC+GGG | + | chr8.1:5209542-5209561 | None:intergenic | 30.0% | |
| CATCCATAACAATATGTTCA+AGG | + | chr8.1:5207330-5207349 | None:intergenic | 30.0% | |
| CTAATTCTGATACAAACTAC+AGG | - | chr8.1:5209252-5209271 | MS.gene073303:CDS | 30.0% | |
| GATTTATACTCATCAGTTAG+AGG | + | chr8.1:5208334-5208353 | None:intergenic | 30.0% | |
| GCATATTAACTTAGATGCAT+CGG | + | chr8.1:5209543-5209562 | None:intergenic | 30.0% | |
| GTATCAAAATCTCAATCTTC+AGG | - | chr8.1:5207622-5207641 | MS.gene073303:intron | 30.0% | |
| TTACTGTTTATGTAAACCGA+AGG | - | chr8.1:5207713-5207732 | MS.gene073303:intron | 30.0% | |
| TTTACATCGTTGGACTATTT+CGG | - | chr8.1:5207286-5207305 | MS.gene073303:CDS | 30.0% | |
| ! | AGATGTTGATAAACATAAGG+AGG | - | chr8.1:5207513-5207532 | MS.gene073303:intron | 30.0% |
| ! | GTATCTATTTGTGAGTTTTC+AGG | - | chr8.1:5208067-5208086 | MS.gene073303:CDS | 30.0% |
| ! | TAGCCTTGAACATATTGTTA+TGG | - | chr8.1:5207324-5207343 | MS.gene073303:CDS | 30.0% |
| ! | TGATATTTTCTGCACAGTTT+CGG | + | chr8.1:5207569-5207588 | None:intergenic | 30.0% |
| !! | CACTATATTGGCTTGTAATT+AGG | - | chr8.1:5209212-5209231 | MS.gene073303:CDS | 30.0% |
| !!! | TATGGTATGGATGGTTTTTT+TGG | - | chr8.1:5207151-5207170 | MS.gene073303:CDS | 30.0% |
| AAAATTGACGCATTCATAGG+CGG | + | chr8.1:5207187-5207206 | None:intergenic | 35.0% | |
| AAACCTGAAAGTTCGTTAGA+AGG | + | chr8.1:5207853-5207872 | None:intergenic | 35.0% | |
| AACCTGAAAGTTCGTTAGAA+GGG | + | chr8.1:5207852-5207871 | None:intergenic | 35.0% | |
| AAGAATGTGCAGTTTCGTTT+AGG | + | chr8.1:5209077-5209096 | None:intergenic | 35.0% | |
| AAGTTCATTGTATCCCTTAG+CGG | + | chr8.1:5209873-5209892 | None:intergenic | 35.0% | |
| AATCGATACTGAAGAAGCTA+AGG | - | chr8.1:5207675-5207694 | MS.gene073303:intron | 35.0% | |
| AGTTTATGATGATCCATCAG+AGG | - | chr8.1:5208203-5208222 | MS.gene073303:intron | 35.0% | |
| ATAACCTGTCTAATGTTGAC+TGG | + | chr8.1:5208254-5208273 | None:intergenic | 35.0% | |
| ATCTCAATCTTCAGGTCATA+TGG | - | chr8.1:5207630-5207649 | MS.gene073303:intron | 35.0% | |
| ATGTTTGCTTCTGTGTTTGA+TGG | + | chr8.1:5209310-5209329 | None:intergenic | 35.0% | |
| CAAAAGTTCTGCACCAAAAT+AGG | + | chr8.1:5209039-5209058 | None:intergenic | 35.0% | |
| CAAGAACTTTGATGTTCGTT+TGG | - | chr8.1:5207991-5208010 | MS.gene073303:CDS | 35.0% | |
| CAATGTGAATATGGAAATGG+TGG | - | chr8.1:5209745-5209764 | MS.gene073303:CDS | 35.0% | |
| CACCATTTCCATATTCACAT+TGG | + | chr8.1:5209747-5209766 | None:intergenic | 35.0% | |
| CAGTTTCGTTTAGGTAAGAA+GGG | + | chr8.1:5209068-5209087 | None:intergenic | 35.0% | |
| CATAGAACTCAGTTTGCAAA+TGG | - | chr8.1:5206821-5206840 | MS.gene073303:CDS | 35.0% | |
| CATTAGACAGGTTATATGCA+TGG | - | chr8.1:5208259-5208278 | MS.gene073303:intron | 35.0% | |
| CGATGTAAAAGGATTCCAAA+AGG | + | chr8.1:5207275-5207294 | None:intergenic | 35.0% | |
| CTGAGGAACCATGATATAAA+AGG | - | chr8.1:5208561-5208580 | MS.gene073303:intron | 35.0% | |
| CTTGAGTATCTGACACATAT+TGG | - | chr8.1:5208873-5208892 | MS.gene073303:CDS | 35.0% | |
| GAAATGGATGATGAACAAGA+AGG | - | chr8.1:5207412-5207431 | MS.gene073303:intron | 35.0% | |
| GAACCATGATATAAAAGGAG+AGG | - | chr8.1:5208566-5208585 | MS.gene073303:intron | 35.0% | |
| GCAAAAATTGACGCATTCAT+AGG | + | chr8.1:5207190-5207209 | None:intergenic | 35.0% | |
| GCAGTGTGTTAGAAATTTGA+AGG | + | chr8.1:5208781-5208800 | None:intergenic | 35.0% | |
| GCTACATTGAGTGATGATAT+GGG | + | chr8.1:5208829-5208848 | None:intergenic | 35.0% | |
| TAAGGTTGGAGAAGAAGTTA+TGG | - | chr8.1:5209775-5209794 | MS.gene073303:CDS | 35.0% | |
| TATTCTCCAGTGTACCAATA+TGG | - | chr8.1:5207133-5207152 | MS.gene073303:CDS | 35.0% | |
| TCAAACACAGAAGCAAACAT+TGG | - | chr8.1:5209310-5209329 | MS.gene073303:CDS | 35.0% | |
| TCTCCAACAACAATTGAGTT+TGG | - | chr8.1:5207004-5207023 | MS.gene073303:CDS | 35.0% | |
| TCTTAACTGTTGTGCATAGA+AGG | + | chr8.1:5209693-5209712 | None:intergenic | 35.0% | |
| TGCTACATTGAGTGATGATA+TGG | + | chr8.1:5208830-5208849 | None:intergenic | 35.0% | |
| TTCAACCATGACTTCTTCTT+TGG | + | chr8.1:5207494-5207513 | None:intergenic | 35.0% | |
| TTCAATATCGAAATGACTGC+AGG | + | chr8.1:5206974-5206993 | None:intergenic | 35.0% | |
| TTCCTGACTGTTGAAAAAGA+AGG | + | chr8.1:5208503-5208522 | None:intergenic | 35.0% | |
| TTGCTTATTCTCCGAATAAC+AGG | - | chr8.1:5207206-5207225 | MS.gene073303:CDS | 35.0% | |
| ! | GGAGGAGTTTACATCAATTT+TGG | + | chr8.1:5207473-5207492 | None:intergenic | 35.0% |
| ! | GTTCCTCTCCTTTTATATCA+TGG | + | chr8.1:5208572-5208591 | None:intergenic | 35.0% |
| ! | TTGGAATCCTTTTACATCGT+TGG | - | chr8.1:5207276-5207295 | MS.gene073303:CDS | 35.0% |
| !! | GGATAAGTATTGAGCTTTCT+TGG | + | chr8.1:5207830-5207849 | None:intergenic | 35.0% |
| !! | TAACCTTCTAGGGTACTTTA+TGG | + | chr8.1:5209012-5209031 | None:intergenic | 35.0% |
| !! | TTCTAACGAACTTTCAGGTT+TGG | - | chr8.1:5207852-5207871 | MS.gene073303:intron | 35.0% |
| !!! | GATTTTTTCGCAGCTGAATT+AGG | - | chr8.1:5209665-5209684 | MS.gene073303:CDS | 35.0% |
| AAATTGACGCATTCATAGGC+GGG | + | chr8.1:5207186-5207205 | None:intergenic | 40.0% | |
| AACACACAATGTTCCTCTGA+TGG | + | chr8.1:5208219-5208238 | None:intergenic | 40.0% | |
| AACCATGACTTCTTCTTTGG+AGG | + | chr8.1:5207491-5207510 | None:intergenic | 40.0% | |
| AAGGAGGAAGAGAAAGAGAA+GGG | - | chr8.1:5207529-5207548 | MS.gene073303:intron | 40.0% | |
| ACCTGAAAGTTCGTTAGAAG+GGG | + | chr8.1:5207851-5207870 | None:intergenic | 40.0% | |
| AGAAGAAATGTCTGCAACTG+AGG | - | chr8.1:5208544-5208563 | MS.gene073303:intron | 40.0% | |
| AGATACGAGTGAACGCAAAA+TGG | + | chr8.1:5208053-5208072 | None:intergenic | 40.0% | |
| AGATGCCTTACAAGAAACAG+CGG | - | chr8.1:5209628-5209647 | MS.gene073303:CDS | 40.0% | |
| AGCTTCTTGAATTGCTGCAA+GGG | - | chr8.1:5208718-5208737 | MS.gene073303:intron | 40.0% | |
| AGTTAATATGCTCTCCTCGA+AGG | - | chr8.1:5209552-5209571 | MS.gene073303:CDS | 40.0% | |
| ATCACTTCAGCCATATTTGC+CGG | + | chr8.1:5207739-5207758 | None:intergenic | 40.0% | |
| CAATTCGGTTTCAAGATTGG+AGG | + | chr8.1:5209423-5209442 | None:intergenic | 40.0% | |
| CAGGAGAATTGAAACCTTGA+GGG | - | chr8.1:5208677-5208696 | MS.gene073303:intron | 40.0% | |
| CCAATCTTGAAACCGAATTG+AGG | - | chr8.1:5209423-5209442 | MS.gene073303:CDS | 40.0% | |
| CCTCAATTCGGTTTCAAGAT+TGG | + | chr8.1:5209426-5209445 | None:intergenic | 40.0% | |
| GAAGCCAAGATTCTTATAGC+CGG | - | chr8.1:5209335-5209354 | MS.gene073303:CDS | 40.0% | |
| GAAGTTGCAGCAAAATTGTG+AGG | - | chr8.1:5209913-5209932 | MS.gene073303:CDS | 40.0% | |
| GACTATTTCGGTTACCCTAA+TGG | - | chr8.1:5207298-5207317 | MS.gene073303:CDS | 40.0% | |
| GCAGTTTCGTTTAGGTAAGA+AGG | + | chr8.1:5209069-5209088 | None:intergenic | 40.0% | |
| GGTCCAAACTCAATTGTTGT+TGG | + | chr8.1:5207010-5207029 | None:intergenic | 40.0% | |
| GGTTGGATCCAATGTGAATA+TGG | - | chr8.1:5209736-5209755 | MS.gene073303:CDS | 40.0% | |
| GTGTACCAATATGGTATGGA+TGG | - | chr8.1:5207142-5207161 | MS.gene073303:CDS | 40.0% | |
| GTTCAAGGCTACTTCCATTA+GGG | + | chr8.1:5207315-5207334 | None:intergenic | 40.0% | |
| TAACAATGCCGAGACATCAT+TGG | + | chr8.1:5207803-5207822 | None:intergenic | 40.0% | |
| TAAGGAGGAAGAGAAAGAGA+AGG | - | chr8.1:5207528-5207547 | MS.gene073303:intron | 40.0% | |
| TCAGACTCGAAAATCAATGG+CGG | - | chr8.1:5207586-5207605 | MS.gene073303:intron | 40.0% | |
| TCCAGTGTACCAATATGGTA+TGG | - | chr8.1:5207138-5207157 | MS.gene073303:CDS | 40.0% | |
| TCCATACCATATTGGTACAC+TGG | + | chr8.1:5207142-5207161 | None:intergenic | 40.0% | |
| TCTGCACAAAATACAACGGT+TGG | - | chr8.1:5209719-5209738 | MS.gene073303:CDS | 40.0% | |
| TGAACACAAAGGCCAAACAA+CGG | + | chr8.1:5209593-5209612 | None:intergenic | 40.0% | |
| TGTCTCAACTCGAACCATTT+CGG | + | chr8.1:5207113-5207132 | None:intergenic | 40.0% | |
| TGTTCAAGGCTACTTCCATT+AGG | + | chr8.1:5207316-5207335 | None:intergenic | 40.0% | |
| TGTTTATGTAAACCGAAGGC+CGG | - | chr8.1:5207717-5207736 | MS.gene073303:intron | 40.0% | |
| TTCACCTCAGTCTTCTCAAT+GGG | - | chr8.1:5207246-5207265 | MS.gene073303:CDS | 40.0% | |
| TTGAAACCGAATTGAGGAAC+TGG | - | chr8.1:5209429-5209448 | MS.gene073303:CDS | 40.0% | |
| TTGCAGCAATTCAAGAAGCT+GGG | + | chr8.1:5208718-5208737 | None:intergenic | 40.0% | |
| ! | AATGCCGGCTATAAGAATCT+TGG | + | chr8.1:5209342-5209361 | None:intergenic | 40.0% |
| ! | ACTCAGTTGAAGCTATTTCC+AGG | - | chr8.1:5208658-5208677 | MS.gene073303:intron | 40.0% |
| ! | AGTTATGGAGGTTGCTGTTA+AGG | - | chr8.1:5209790-5209809 | MS.gene073303:CDS | 40.0% |
| ! | CAATTGTTGAAGTTGGTCTC+TGG | + | chr8.1:5208368-5208387 | None:intergenic | 40.0% |
| ! | CTTCTCAATGGGATTCCTTT+TGG | - | chr8.1:5207257-5207276 | MS.gene073303:CDS | 40.0% |
| ! | GTGAATTATTTGAGGCCAAG+TGG | - | chr8.1:5207049-5207068 | MS.gene073303:CDS | 40.0% |
| ! | TGTCCATAAAGTACCCTAGA+AGG | - | chr8.1:5209006-5209025 | MS.gene073303:CDS | 40.0% |
| !! | TAACGAACTTTCAGGTTTGG+TGG | - | chr8.1:5207855-5207874 | MS.gene073303:intron | 40.0% |
| !! | TTTGCTATTGACTCCGCTAA+GGG | - | chr8.1:5209857-5209876 | MS.gene073303:CDS | 40.0% |
| !!! | CACCTTCTTTTTCAACAGTC+AGG | - | chr8.1:5208498-5208517 | MS.gene073303:CDS | 40.0% |
| !!! | CTTGTTTTATCCACAGACGA+AGG | + | chr8.1:5208594-5208613 | None:intergenic | 40.0% |
| AACAGTCAGGAACACGTGTT+CGG | - | chr8.1:5208511-5208530 | MS.gene073303:CDS | 45.0% | |
| AATTGACGCATTCATAGGCG+GGG | + | chr8.1:5207185-5207204 | None:intergenic | 45.0% | |
| ACTACAGGCTAGCAAAGATG+TGG | - | chr8.1:5209267-5209286 | MS.gene073303:CDS | 45.0% | |
| AGACCTGGAACAGGAAGAAA+TGG | - | chr8.1:5207396-5207415 | MS.gene073303:intron | 45.0% | |
| AGCAAAGATGTGGAAGGTGA+TGG | - | chr8.1:5209277-5209296 | MS.gene073303:CDS | 45.0% | |
| AGGAAGGTTCGAGAAGAAGA+AGG | - | chr8.1:5207367-5207386 | MS.gene073303:CDS | 45.0% | |
| ATTTCTTCCTGTTCCAGGTC+TGG | + | chr8.1:5207397-5207416 | None:intergenic | 45.0% | |
| CAATGCAGCCAATGATGTCT+CGG | - | chr8.1:5207792-5207811 | MS.gene073303:intron | 45.0% | |
| CAGCTTCTTGAATTGCTGCA+AGG | - | chr8.1:5208717-5208736 | MS.gene073303:intron | 45.0% | |
| CATCCATTTCTTCCTGTTCC+AGG | + | chr8.1:5207402-5207421 | None:intergenic | 45.0% | |
| CCAGGAGAATTGAAACCTTG+AGG | - | chr8.1:5208676-5208695 | MS.gene073303:intron | 45.0% | |
| CCTCAAGGTTTCAATTCTCC+TGG | + | chr8.1:5208679-5208698 | None:intergenic | 45.0% | |
| CGTCGATAACTGATCCATAC+AGG | - | chr8.1:5209384-5209403 | MS.gene073303:CDS | 45.0% | |
| CTCCTCCAAAGAAGAAGTCA+TGG | - | chr8.1:5207486-5207505 | MS.gene073303:intron | 45.0% | |
| CTTCACCTCAGTCTTCTCAA+TGG | - | chr8.1:5207245-5207264 | MS.gene073303:CDS | 45.0% | |
| CTTGCAGCAATTCAAGAAGC+TGG | + | chr8.1:5208719-5208738 | None:intergenic | 45.0% | |
| GAACACAAAGGCCAAACAAC+GGG | + | chr8.1:5209592-5209611 | None:intergenic | 45.0% | |
| GAAGCTAAGGAAGAAACACC+TGG | - | chr8.1:5207688-5207707 | MS.gene073303:intron | 45.0% | |
| GAATCCCATTGAGAAGACTG+AGG | + | chr8.1:5207253-5207272 | None:intergenic | 45.0% | |
| GGAAGGTTCGAGAAGAAGAA+GGG | - | chr8.1:5207368-5207387 | MS.gene073303:CDS | 45.0% | |
| GGGATAACAGGCCTGTTATT+CGG | + | chr8.1:5207220-5207239 | None:intergenic | 45.0% | |
| GGTTGGAGAAGAAGTTATGG+AGG | - | chr8.1:5209778-5209797 | MS.gene073303:CDS | 45.0% | |
| GTCAAGTGCTATGAGCTCAA+TGG | - | chr8.1:5209829-5209848 | MS.gene073303:CDS | 45.0% | |
| GTCACCAGTCAACATTAGAC+AGG | - | chr8.1:5208247-5208266 | MS.gene073303:intron | 45.0% | |
| GTCTCAACTCGAACCATTTC+GGG | + | chr8.1:5207112-5207131 | None:intergenic | 45.0% | |
| GTTATGGATGATGAGAACCG+AGG | - | chr8.1:5207340-5207359 | MS.gene073303:CDS | 45.0% | |
| GTTTCGCCAGTTCCTCAATT+CGG | + | chr8.1:5209438-5209457 | None:intergenic | 45.0% | |
| TCCCCTTCTAACGAACTTTC+AGG | - | chr8.1:5207847-5207866 | MS.gene073303:intron | 45.0% | |
| TCCTACATTCACGCACTAAC+TGG | - | chr8.1:5209488-5209507 | MS.gene073303:CDS | 45.0% | |
| TGATGTCTCGGCATTGTTAG+AGG | - | chr8.1:5207804-5207823 | MS.gene073303:intron | 45.0% | |
| TTGAGAAGACTGAGGTGAAG+CGG | + | chr8.1:5207245-5207264 | None:intergenic | 45.0% | |
| ! | ATGGTGGAAGTTGCTAAGGT+TGG | - | chr8.1:5209761-5209780 | MS.gene073303:CDS | 45.0% |
| ! | CGACGTAGAAGACTGTTTTC+TGG | + | chr8.1:5209369-5209388 | None:intergenic | 45.0% |
| ! | GGAAATGGTGGAAGTTGCTA+AGG | - | chr8.1:5209757-5209776 | MS.gene073303:CDS | 45.0% |
| ! | GTTGCTGTTAAGGTACTCTG+TGG | - | chr8.1:5209800-5209819 | MS.gene073303:CDS | 45.0% |
| ! | TGTTTGGCCTTTGTGTTCAG+TGG | - | chr8.1:5209594-5209613 | MS.gene073303:CDS | 45.0% |
| !! | AAGCACCGCTGTTTCTTGTA+AGG | + | chr8.1:5209636-5209655 | None:intergenic | 45.0% |
| !! | CTGTTTTCTGGCATCAATGC+CGG | + | chr8.1:5209357-5209376 | None:intergenic | 45.0% |
| !! | GAAATCGGTGGATTACCACT+TGG | + | chr8.1:5207067-5207086 | None:intergenic | 45.0% |
| !! | GGCGAAACACTTTTGAGTCA+TGG | - | chr8.1:5209450-5209469 | MS.gene073303:CDS | 45.0% |
| !! | GTTTGCTATTGACTCCGCTA+AGG | - | chr8.1:5209856-5209875 | MS.gene073303:CDS | 45.0% |
| !! | TAATCCACCGATTTCAGTCG+AGG | - | chr8.1:5207072-5207091 | MS.gene073303:CDS | 45.0% |
| AAACCGAAGGCCGGCAAATA+TGG | - | chr8.1:5207726-5207745 | MS.gene073303:intron | 50.0% | |
| ACATTCACGCACTAACTGGC+TGG | - | chr8.1:5209492-5209511 | MS.gene073303:CDS | 50.0% | |
| AGAAGAAGGGATACCAGACC+TGG | - | chr8.1:5207381-5207400 | MS.gene073303:CDS | 50.0% | |
| AGCTCTACTCACCCGTTGTT+TGG | - | chr8.1:5209578-5209597 | MS.gene073303:CDS | 50.0% | |
| ATGATGAGAACCGAGGACTG+AGG | - | chr8.1:5207347-5207366 | MS.gene073303:CDS | 50.0% | |
| ATGGGAGAAGAAGCTCTACC+AGG | - | chr8.1:5208278-5208297 | MS.gene073303:intron | 50.0% | |
| CAGGCTAGCAAAGATGTGGA+AGG | - | chr8.1:5209271-5209290 | MS.gene073303:CDS | 50.0% | |
| CTTTCCTCGACTGAAATCGG+TGG | + | chr8.1:5207079-5207098 | None:intergenic | 50.0% | |
| GAAGCTCTACCAGGAAGTCA+AGG | - | chr8.1:5208287-5208306 | MS.gene073303:intron | 50.0% | |
| GACGAGCGAAAAAGAGCTAC+TGG | + | chr8.1:5208141-5208160 | None:intergenic | 50.0% | |
| GCCAGTTAGTGCGTGAATGT+AGG | + | chr8.1:5209492-5209511 | None:intergenic | 50.0% | |
| GCCTTGACCACTGAACACAA+AGG | + | chr8.1:5209604-5209623 | None:intergenic | 50.0% | |
| GCCTTTGTGTTCAGTGGTCA+AGG | - | chr8.1:5209600-5209619 | MS.gene073303:CDS | 50.0% | |
| GGCCTTTCCTCGACTGAAAT+CGG | + | chr8.1:5207082-5207101 | None:intergenic | 50.0% | |
| GTGCAACTCTTCATCCCTCA+AGG | + | chr8.1:5208694-5208713 | None:intergenic | 50.0% | |
| TGAGAAGACTGAGGTGAAGC+GGG | + | chr8.1:5207244-5207263 | None:intergenic | 50.0% | |
| TGAGTAGAGCTAGACCTTCG+AGG | + | chr8.1:5209569-5209588 | None:intergenic | 50.0% | |
| ! | ACTCGAACCATTTCGGGTGA+CGG | + | chr8.1:5207106-5207125 | None:intergenic | 50.0% |
| ! | GCTGTTAAGGTACTCTGTGG+TGG | - | chr8.1:5209803-5209822 | MS.gene073303:CDS | 50.0% |
| !! | CACCGATTTCAGTCGAGGAA+AGG | - | chr8.1:5207077-5207096 | MS.gene073303:CDS | 50.0% |
| !! | CTAGCTTTGTTCTTCGCAGG+TGG | + | chr8.1:5206950-5206969 | None:intergenic | 50.0% |
| !! | GGACTAGCTTTGTTCTTCGC+AGG | + | chr8.1:5206953-5206972 | None:intergenic | 50.0% |
| AAGACTGAGGTGAAGCGGGA+GGG | + | chr8.1:5207240-5207259 | None:intergenic | 55.0% | |
| AGGAGAGGAACCTTCGTCTG+TGG | - | chr8.1:5208581-5208600 | MS.gene073303:intron | 55.0% | |
| AGGGATACCAGACCTGGAAC+AGG | - | chr8.1:5207387-5207406 | MS.gene073303:CDS | 55.0% | |
| CAGCCATATTTGCCGGCCTT+CGG | + | chr8.1:5207732-5207751 | None:intergenic | 55.0% | |
| CTCGAACCTTCCTCAGTCCT+CGG | + | chr8.1:5207360-5207379 | None:intergenic | 55.0% | |
| TGAGAACCGAGGACTGAGGA+AGG | - | chr8.1:5207351-5207370 | MS.gene073303:CDS | 55.0% | |
| AAGGCCTCCGTCACCCGAAA+TGG | - | chr8.1:5207096-5207115 | MS.gene073303:CDS | 60.0% | |
| GAAGACTGAGGTGAAGCGGG+AGG | + | chr8.1:5207241-5207260 | None:intergenic | 60.0% | |
| GGTGAAGCGGGAGGGATAAC+AGG | + | chr8.1:5207232-5207251 | None:intergenic | 60.0% | |
| ! | CGAACCATTTCGGGTGACGG+AGG | + | chr8.1:5207103-5207122 | None:intergenic | 60.0% |
| GCTGAGCGTGCGAGCCTGTA+TGG | + | chr8.1:5209401-5209420 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 5206734 | 5209946 | 5206734 | ID=MS.gene073303 |
| chr8.1 | mRNA | 5206734 | 5209946 | 5206734 | ID=MS.gene073303.t1;Parent=MS.gene073303 |
| chr8.1 | exon | 5208812 | 5209946 | 5208812 | ID=MS.gene073303.t1.exon1;Parent=MS.gene073303.t1 |
| chr8.1 | CDS | 5208812 | 5209946 | 5208812 | ID=cds.MS.gene073303.t1;Parent=MS.gene073303.t1 |
| chr8.1 | exon | 5208372 | 5208559 | 5208372 | ID=MS.gene073303.t1.exon2;Parent=MS.gene073303.t1 |
| chr8.1 | CDS | 5208372 | 5208559 | 5208372 | ID=cds.MS.gene073303.t1;Parent=MS.gene073303.t1 |
| chr8.1 | exon | 5207941 | 5208164 | 5207941 | ID=MS.gene073303.t1.exon3;Parent=MS.gene073303.t1 |
| chr8.1 | CDS | 5207941 | 5208164 | 5207941 | ID=cds.MS.gene073303.t1;Parent=MS.gene073303.t1 |
| chr8.1 | exon | 5206734 | 5207406 | 5206734 | ID=MS.gene073303.t1.exon4;Parent=MS.gene073303.t1 |
| chr8.1 | CDS | 5206734 | 5207406 | 5206734 | ID=cds.MS.gene073303.t1;Parent=MS.gene073303.t1 |
| Gene Sequence |
| Protein sequence |
