AlfalfaGEDB | MS.gene073326

M. sativa cultivar XinJiangDaYe / MS.gene073326

KEGG: -
GO: GO:0006807 GO:0008150 GO:0008152 GO:0019538 GO:0043170 GO:0044238 GO:0071704 GO:1901564
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073326.t1	XP_003610042.1	96.5	822	27	1	1	822	1	820	0.00E+00	1487.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073326.t1	Q9SZR3	34.9	1041	430	29	1	819	1	1015	1.5e-123	445.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073326.t1	G7JU94	96.5	822	27	1	1	822	1	820	0.0e+00	1487.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049418	MS.gene073326	0.846343	2.31E-59	-1.69E-46
MS.gene051018	MS.gene073326	0.813384	2.63E-51	-1.69E-46
MS.gene051648	MS.gene073326	0.810418	1.16E-50	-1.69E-46
MS.gene051720	MS.gene073326	0.806412	8.33E-50	-1.69E-46
MS.gene053122	MS.gene073326	0.810259	1.26E-50	-1.69E-46
MS.gene053144	MS.gene073326	0.822016	2.97E-53	-1.69E-46
MS.gene053536	MS.gene073326	0.842541	2.43E-58	-1.69E-46
MS.gene053538	MS.gene073326	0.841338	5.05E-58	-1.69E-46
MS.gene054584	MS.gene073326	0.814042	1.88E-51	-1.69E-46
MS.gene055537	MS.gene073326	0.846727	1.81E-59	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073326.t1	MTR_4g127290	97.567	822	18	1	1	822	1	820	0.0	1637
MS.gene073326.t1	MTR_2g038200	52.038	638	217	18	247	822	399	1009	1.15e-180	546
MS.gene073326.t1	MTR_2g038200	76.136	176	34	4	1	172	1	172	5.88e-62	226
MS.gene073326.t1	MTR_1g057150	63.102	187	49	5	1	177	1	177	1.65e-61	223
MS.gene073326.t1	MTR_1g090640	63.636	176	49	5	1	170	1	167	7.11e-57	210
MS.gene073326.t1	MTR_4g129230	51.899	237	103	5	1	234	1	229	4.23e-53	200
MS.gene073326.t1	MTR_4g129230	21.747	584	311	21	291	781	454	984	2.08e-13	74.7
MS.gene073326.t1	MTR_3g464150	45.349	172	79	3	9	166	9	179	4.14e-25	112
MS.gene073326.t1	MTR_3g464150	27.832	309	159	13	449	709	682	974	4.66e-13	73.6
MS.gene073326.t1	MTR_5g071060	38.793	232	125	7	9	226	9	237	1.24e-24	111

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073326.t1	AT4G29920	37.869	610	320	21	247	819	431	1018	1.32e-95	322
MS.gene073326.t1	AT4G29920	58.506	241	73	7	1	218	1	237	6.38e-61	223
MS.gene073326.t1	AT4G29920	37.705	610	318	21	247	819	431	1015	8.25e-95	319
MS.gene073326.t1	AT4G29920	58.506	241	73	7	1	218	1	237	5.92e-61	224
MS.gene073326.t1	AT5G57130	60.924	238	65	5	1	215	1	233	8.90e-72	255
MS.gene073326.t1	AT5G57130	33.333	609	323	28	246	820	468	1027	8.77e-64	232
MS.gene073326.t1	AT3G52490	63.687	179	50	4	1	174	1	169	1.16e-58	215
MS.gene073326.t1	AT3G52490	25.128	390	235	9	243	587	365	742	4.15e-21	99.8
MS.gene073326.t1	AT5G57710	55.157	223	77	7	1	213	1	210	2.52e-52	197
MS.gene073326.t1	AT4G30350	55.172	203	71	4	1	191	1	195	1.60e-46	179

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Find 135 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAAATTTCATTTACA+TGG	0.483113	8.1:+5788528	MS.gene073326:CDS
AAACTGTTATCAATTTGTTG+TGG	0.554067	8.1:+5788897	MS.gene073326:CDS
AAACTTTAAGTAACAAAGAG+GGG	0.574195	8.1:+5788807	MS.gene073326:CDS
AAAGCCCTTTAGCAGTAATA+AGG	0.361117	8.1:+5787728	MS.gene073326:CDS
AAAGCTGATGAAGAGGAAGA+TGG	0.637095	8.1:+5789109	MS.gene073326:CDS
AAAGTGATGGCTACATGTAG+AGG	0.593224	8.1:-5786383	None:intergenic
AAATGTTATAATAGTTCTGG+TGG	0.549816	8.1:+5786815	MS.gene073326:CDS
AACAGTTAACTTGGGAGGGA+AGG	0.532413	8.1:+5789432	MS.gene073326:CDS
AAGACTAAGTTCCTTCAAAA+GGG	0.480191	8.1:+5786415	MS.gene073326:CDS
AATATTACCTGGAAGAATGA+AGG	0.464963	8.1:-5787033	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGACTAAGTTCCTTCAAAA+GGG	+	chr8.1:5786415-5786434	MS.gene073326:CDS	30.0%
AATATTACCTGGAAGAATGA+AGG	-	chr8.1:5787036-5787055	None:intergenic	30.0%
ATAATGCAATCATCGTGTAT+TGG	-	chr8.1:5787948-5787967	None:intergenic	30.0%
ATATTACCTGGAAGAATGAA+GGG	-	chr8.1:5787035-5787054	None:intergenic	30.0%
CAATGATGATTCAAGTGAAA+AGG	+	chr8.1:5788376-5788395	MS.gene073326:CDS	30.0%
CACATCTATGATAGTACTAT+TGG	+	chr8.1:5788038-5788057	MS.gene073326:intron	30.0%
CAGTTTAGAAACAGTTAACT+TGG	+	chr8.1:5789423-5789442	MS.gene073326:CDS	30.0%
CCTAATAGCATTTCAGAAAA+TGG	-	chr8.1:5788680-5788699	None:intergenic	30.0%
CTGAGAGAAATTTCATGAAT+TGG	-	chr8.1:5788763-5788782	None:intergenic	30.0%
GAATTGAAGAGAATGAAAAG+GGG	+	chr8.1:5789002-5789021	MS.gene073326:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	5786275	5789567	5786275	ID=MS.gene073326
chr8.1	mRNA	5786275	5789567	5786275	ID=MS.gene073326.t1;Parent=MS.gene073326
chr8.1	exon	5786275	5787047	5786275	ID=MS.gene073326.t1.exon1;Parent=MS.gene073326.t1
chr8.1	CDS	5786275	5787047	5786275	ID=cds.MS.gene073326.t1;Parent=MS.gene073326.t1
chr8.1	exon	5787674	5787887	5787674	ID=MS.gene073326.t1.exon2;Parent=MS.gene073326.t1
chr8.1	CDS	5787674	5787887	5787674	ID=cds.MS.gene073326.t1;Parent=MS.gene073326.t1
chr8.1	exon	5788086	5789567	5788086	ID=MS.gene073326.t1.exon3;Parent=MS.gene073326.t1
chr8.1	CDS	5788086	5789567	5788086	ID=cds.MS.gene073326.t1;Parent=MS.gene073326.t1

Gene Sequence

>MS.gene073326

ATGCGCTCAGGAGGTTGTGCATTGCAGCAGACCCTCACAGCAGAGGCTGCTTCAGTTTTGAAGCATTCTCTTGTGTTGGCTAGAAGGAGAGGTCATCCACAGGTCACTCCTCTACATGTAGCCATCACTTTACTTACCTTAAGACTAAGTTCCTTCAAAAGGGCTTGTCTTAAGTCTCATCAACCACACCATCAAACTTCACAACATCCACTTCAATCTAGAGCTCTTGAGCTTTGTTTCAATGTAGCTCTTAATAGGTTACCAACAACACCTTCTCCTTTGATTCACTCTCAGCCTTCACTTTCCAATGCTCTCATTGCTGCATTGAAAAGAGCACAAGCTCATCAAAGAAGAGGTTCCATAGAACAGCAGCAGCAGCAACAGCAAACGGTTCTTACTGTGAAAGTTGAACTTGAACAGCTTATTATATCTATACTTGATGATCCTAGTGTTAGTAGGGTTATGAGAGAAGCTGGATTCTCTAGTACTCTTGTTAAGAACAATTTAGAAGACTCTTTCTCACCTTCTAATTCTGTTTTTAAATGTTATAATAGTTCTGGTGGTGGTGTGTTTTCATCTCCATGTTCACCTTCAACTAGTGAGAATCACAGAGAAAACATCAACCTTAGCAGTTTCAGACAGAACAATTTCATGGCTGCTACTAGTGCTAAGCACAGTTCTTGTGAGTTTAACTCAGTTCTCTTTTCTCCACCAAAAAGAACTGAGTTGACGAGTACATCAGGTGGACTTGGCTTGACCCTTCATTCTTCCAGGTAATATTTTATTTTGCTTAATCAATAAATATAACACTTAGTACATGTTTGGATTCACAGTGAGTTGGACAGAAACACAGTGATTTGTGTATCCAAACATGCACTAACCTTTTAGTAACATAACATGTGTTCTTAATTTGTTTGATTTAAGGTATAAAAGGTTTCATAATGACATATTAAATGCAACCAAAAAAGAAAGGTAAACATAAGTACATAAAACTAAAAGTGTTGTCTAGTTCTGATGGTGTTTTTGAAATGTTATTAATTTGTTGTGCAATGTGTTGAGGAGTATGTACGGTTACTGAGCTATGGCAGAACACATGTTAAAAGCATTGTTGGTTGGTAGTAAGGCAAATATATGAAGAAGAGTCTTTTTTTTCTGCATCACTTTAGTTTGTCAGTATATAACAAACCTCTTACACGTTAATCAGTCAAATTATTTTGAGTTGGAGAAAAACAAAGACTACACTTTATCTAAAGGAAAATAAAGAAGCAAAGAGTAATACTATTTTCTTTTTTCATATGACAAAAAAGCATTTTCTGAGTAGTATGTATGTTTAAAACTCAACAGTGCCTATTTATTTGCTTAATTATGGATGTTAATTTCTTTTGTACTTAATTTGCAGTGTCCTTGATTCCAAGATGAGCATCTCTCAGAACCTATCTCATATGCTGGAAACAAAGCCCTTTAGCAGTAATAAGGTGCATGAGGATAAACTTAATTGTTGTGAAGAATGTGCTTCCAATTATGAAAAAGAAGCTCAATTTCTCAGACCTGCAGGACAGAAGAAAACATTGCCTTTCTGGCTTCAGTCTCATGGCACAGAAGAACAAAATAAGGTAGCAAATCATTGAATAGAAAACTCATGTTTTTTTGTTCTTTCATCTATTTATAATCCAATACACGATGATTGCATTATGCATACATCAGTATAGTGTATCTATCAACTCTTAAGTGCATCTTTTATAAAGCTAAACATAACATCAAAACACATCTATGATAGTACTATTGGCTTATGAATAATTCAACATTTTCAGGATGCATTAACCGAGTTGAAAAGAAAATGGAATAGACTATGCCACTGTCTACACCAAAACAAACAGCACCAAAATCACTGGAATAGGGGCAACAACAATCATAGTTCAAACCTCAATAATTCATCAAGCATCATATCTCACGCCTCCAATCTTACACCTCGATTCCGTCACCAACAATCATGCATCACCATTGAGTTTAATTTCAATGATAAAAGGGAAACAACAAAGCCAGTCTTTGATTCCATTGCAAGCATAGAAGGTAAAGAAGTAAAGATTAGTCTTGCACTTGGCAATGATGATTCAAGTGAAAAGGTGGGAAATATAACTGATACAACACTACAACAAGCTCATGTTTGTAAACTATTGCAAGAGAATGTGCCATGGCAATCTGAAACTATTCCTTCAATATCAAAAGCCTTGTTTGATACCAAATCAACAAAACAAAATGAAATTTCATTTACATGGTTATTTTTACAAGGCAATGATTTCATAAGCAAGAGAAGATTAGCACTTGCTATTGCAGAATCAGTTTTTGGTTCAGCTGATTTGGTCCTTCAATTGGATATGCTAAAAAAGGAAACTTTAATAGCCCCATTTTCTGAAATGCTATTAGGAGCATTGAGAAAACATCAACAGCTTGTGGTTTTGATTGAAAATGTTGATTCTGCTGATACCCAATTCATGAAATTTCTCTCAGATGGATATGAAAAAGGAAAGTTTGAAACTTTAAGTAACAAAGAGGGGAATTTAGGTCAAGTAATATTCATCTTAACAAAAGGTGGATCCACAAGCATTGAAGAGAAGAACAAAAAAACTGTTATCAATTTGTTGTGGCAAATCAGTGAAACTAAGCCTAATTTCTTGAGCCCCAAGAGAAAAGCTGAATTTGATTTGTTTTCCAAAACCAAGAACCCTAGAATTGAAGAGAATGAAAAGGGGTTGTTGATTTCTGAACAAGGAAGCAAAAAGGAAGAATTTTTAAGACAATCAAGCTTTAACAGTAACACCCTTGATCTGAACATGAAAGCTGATGAAGAGGAAGATGGTGAAGATAAAGCAATTGAAAGTAGCTCAATTTCAAGTGATAATCCATTGAATTCAAATGTGTTTCTTGATTCAATTGAGAACAAGTTTGAGTTTAACACAAGTTCAGATAAAGACAGGAAAAAGACAGAGTTTTTTCTGTTTAAGATTAAAGGGTCATTTGAAGATGTTTGTGGTAAGAAAAATGTGGTGAATTTTAGTGTAGATGAAAAGGTGATTGAAGACATGTGTGTGGGGTGTTGTTTTTTTACTAACAAAATGTTTGAGAAATGGCTGAAAGACATTTTTCAAAGCAGTTTAGAAACAGTTAACTTGGGAGGGAAGGAAGGTATACATTTTAGACTTTGTTTGGGTGATAATAGAAATTGGGATTGGGATAGTGGGTTTATGGATTCTTCTCTGCCTAAGAGTATCCAAGTTAATTACTTCATAGAATGA

Protein sequence

>MS.gene073326.t1

MRSGGCALQQTLTAEAASVLKHSLVLARRRGHPQVTPLHVAITLLTLRLSSFKRACLKSHQPHHQTSQHPLQSRALELCFNVALNRLPTTPSPLIHSQPSLSNALIAALKRAQAHQRRGSIEQQQQQQQTVLTVKVELEQLIISILDDPSVSRVMREAGFSSTLVKNNLEDSFSPSNSVFKCYNSSGGGVFSSPCSPSTSENHRENINLSSFRQNNFMAATSAKHSSCEFNSVLFSPPKRTELTSTSGGLGLTLHSSSVLDSKMSISQNLSHMLETKPFSSNKVHEDKLNCCEECASNYEKEAQFLRPAGQKKTLPFWLQSHGTEEQNKDALTELKRKWNRLCHCLHQNKQHQNHWNRGNNNHSSNLNNSSSIISHASNLTPRFRHQQSCITIEFNFNDKRETTKPVFDSIASIEGKEVKISLALGNDDSSEKVGNITDTTLQQAHVCKLLQENVPWQSETIPSISKALFDTKSTKQNEISFTWLFLQGNDFISKRRLALAIAESVFGSADLVLQLDMLKKETLIAPFSEMLLGALRKHQQLVVLIENVDSADTQFMKFLSDGYEKGKFETLSNKEGNLGQVIFILTKGGSTSIEEKNKKTVINLLWQISETKPNFLSPKRKAEFDLFSKTKNPRIEENEKGLLISEQGSKKEEFLRQSSFNSNTLDLNMKADEEEDGEDKAIESSSISSDNPLNSNVFLDSIENKFEFNTSSDKDRKKTEFFLFKIKGSFEDVCGKKNVVNFSVDEKVIEDMCVGCCFFTNKMFEKWLKDIFQSSLETVNLGGKEGIHFRLCLGDNRNWDWDSGFMDSSLPKSIQVNYFIE