AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07372

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07372.t1 MTR_1g085750 98.864 176 2 0 1 176 1 176 1.82e-131 365
MS.gene07372.t1 MTR_1g085750 99.363 157 1 0 1 157 1 157 5.39e-117 328
MS.gene07372.t1 MTR_7g110790 65.537 177 42 5 1 175 1 160 2.74e-67 202
MS.gene07372.t1 MTR_4g124300 54.135 133 60 1 41 173 52 183 5.22e-39 131
MS.gene07372.t1 MTR_1g069495 50.909 110 36 4 85 176 147 256 3.46e-24 95.9
MS.gene07372.t1 MTR_1g070830 38.650 163 79 6 16 176 58 201 9.36e-23 90.5
MS.gene07372.t1 MTR_1g040675 33.714 175 91 5 9 176 26 182 7.02e-22 87.8
MS.gene07372.t1 MTR_1g076270 44.944 89 48 1 82 170 84 171 1.23e-20 84.3
MS.gene07372.t1 MTR_1g093350 44.944 89 48 1 82 170 84 171 1.23e-20 84.3
MS.gene07372.t1 MTR_5g030710 42.727 110 48 3 82 176 214 323 8.24e-19 82.4
MS.gene07372.t1 MTR_5g067350 42.593 108 46 3 83 176 230 335 1.22e-18 82.0
MS.gene07372.t1 MTR_6g488150 36.232 138 63 4 64 176 105 242 2.15e-18 80.1
MS.gene07372.t1 MTR_1g070520 38.938 113 55 2 78 176 121 233 2.75e-18 79.7
MS.gene07372.t1 MTR_2g100780 36.066 122 52 4 78 176 142 260 4.24e-18 79.3
MS.gene07372.t1 MTR_8g067530 42.342 111 47 4 82 176 235 344 5.87e-18 80.1
MS.gene07372.t1 MTR_1g093240 41.593 113 51 4 78 176 113 224 6.08e-18 78.6
MS.gene07372.t1 MTR_2g100780 35.833 120 51 4 78 174 142 258 1.48e-17 77.8
MS.gene07372.t1 MTR_1g093240 41.593 113 51 4 78 176 113 224 1.69e-17 77.4
MS.gene07372.t1 MTR_8g103030 38.462 117 56 2 76 176 165 281 2.09e-17 77.8
MS.gene07372.t1 MTR_7g096090 37.273 110 56 2 80 176 129 238 2.46e-17 77.0
MS.gene07372.t1 MTR_4g124300 48.193 83 43 0 41 123 52 134 4.59e-17 73.9
MS.gene07372.t1 MTR_8g014520 33.333 108 57 1 78 170 150 257 4.72e-17 76.6
MS.gene07372.t1 MTR_8g014520 33.333 108 57 1 78 170 150 257 5.19e-17 76.6
MS.gene07372.t1 MTR_2g101500 38.532 109 52 2 83 176 206 314 6.03e-17 77.0
MS.gene07372.t1 MTR_4g011880 47.475 99 45 4 82 176 73 168 4.48e-16 72.4
MS.gene07372.t1 MTR_1g080860 40.000 105 50 4 85 176 137 241 4.96e-16 73.6
MS.gene07372.t1 MTR_1g080860 40.000 105 50 4 85 176 137 241 6.21e-16 73.2
MS.gene07372.t1 MTR_1g040675 32.450 151 78 4 13 157 30 162 6.74e-16 71.6
MS.gene07372.t1 MTR_1g109510 41.573 89 50 1 85 173 85 171 7.37e-15 68.9
MS.gene07372.t1 MTR_2g102490 34.783 92 52 1 85 168 88 179 1.70e-13 65.9
MS.gene07372.t1 MTR_4g115075 32.773 119 59 4 64 170 96 205 5.04e-13 64.7
MS.gene07372.t1 MTR_7g062540 35.227 88 50 1 81 168 568 648 2.68e-12 64.3
MS.gene07372.t1 MTR_2g005240 32.039 103 56 2 66 168 538 626 7.88e-12 63.2
MS.gene07372.t1 MTR_4g021580 35.366 82 46 1 87 168 559 633 2.27e-11 61.6
MS.gene07372.t1 MTR_8g027440 36.585 82 45 1 87 168 562 636 3.43e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07372.t1 AT3G62100 49.686 159 65 5 20 171 19 169 4.09e-39 131
MS.gene07372.t1 AT2G46990 46.259 147 67 4 36 172 28 172 1.73e-35 122
MS.gene07372.t1 AT3G17600 44.366 142 60 5 42 174 27 158 6.33e-33 115
MS.gene07372.t1 AT3G62100 46.897 145 62 5 20 157 19 155 2.10e-30 108
MS.gene07372.t1 AT2G46990 43.939 132 62 4 36 157 28 157 3.95e-27 100
MS.gene07372.t1 AT5G25890 46.809 94 42 2 84 176 81 167 2.69e-24 93.6
MS.gene07372.t1 AT4G28640 46.729 107 46 2 75 170 128 234 5.57e-23 92.0
MS.gene07372.t1 AT4G28640 46.729 107 46 2 75 170 128 234 5.58e-23 92.0
MS.gene07372.t1 AT4G28640 46.729 107 46 2 75 170 128 234 3.55e-22 90.9
MS.gene07372.t1 AT3G16500 37.288 118 56 2 71 170 132 249 6.20e-21 87.0
MS.gene07372.t1 AT3G16500 37.288 118 56 2 71 170 132 249 7.21e-21 87.0
MS.gene07372.t1 AT1G04550 50.000 90 38 2 85 168 126 214 1.04e-20 85.9
MS.gene07372.t1 AT1G51950 42.157 102 44 3 83 171 149 248 1.55e-20 85.9
MS.gene07372.t1 AT2G33310 44.554 101 47 2 85 176 131 231 1.63e-20 85.5
MS.gene07372.t1 AT2G33310 44.554 101 47 2 85 176 130 230 1.81e-20 85.5
MS.gene07372.t1 AT2G33310 44.554 101 47 2 85 176 130 230 1.81e-20 85.5
MS.gene07372.t1 AT5G65670 42.202 109 48 2 83 176 216 324 1.83e-20 87.0
MS.gene07372.t1 AT5G65670 42.202 109 48 2 83 176 216 324 2.03e-20 86.7
MS.gene07372.t1 AT1G04240 44.211 95 51 2 83 176 92 185 6.52e-20 82.8
MS.gene07372.t1 AT3G23030 41.121 107 56 2 64 170 64 163 7.72e-20 82.0
MS.gene07372.t1 AT1G04240 44.211 95 51 2 83 176 192 285 2.38e-19 83.2
MS.gene07372.t1 AT3G23030 41.121 107 56 2 64 170 151 250 3.15e-19 82.4
MS.gene07372.t1 AT5G43700 46.512 86 45 1 85 170 90 174 6.55e-19 80.1
MS.gene07372.t1 AT1G52830 38.793 116 65 4 64 176 74 186 2.67e-18 78.6
MS.gene07372.t1 AT4G29080 39.450 109 51 3 83 176 185 293 4.99e-18 79.7
MS.gene07372.t1 AT4G14560 44.186 86 47 1 85 170 76 160 5.71e-18 77.0
MS.gene07372.t1 AT1G15050 36.364 132 66 4 42 170 29 145 3.09e-17 74.7
MS.gene07372.t1 AT1G15050 36.364 132 66 4 42 170 61 177 4.46e-17 75.1
MS.gene07372.t1 AT3G15540 43.011 93 50 2 85 176 98 188 5.63e-17 75.1
MS.gene07372.t1 AT2G22670 39.815 108 50 3 84 176 200 307 1.48e-16 75.9
MS.gene07372.t1 AT2G22670 39.815 108 50 3 84 176 200 307 1.48e-16 75.9
MS.gene07372.t1 AT2G22670 39.815 108 50 3 84 176 200 307 1.78e-16 75.9
MS.gene07372.t1 AT2G22670 39.815 108 50 3 84 176 200 307 1.78e-16 75.9
MS.gene07372.t1 AT2G22670 39.450 109 51 3 83 176 216 324 1.99e-16 75.9
MS.gene07372.t1 AT4G14550 34.058 138 65 6 64 176 80 216 3.05e-16 73.9
MS.gene07372.t1 AT1G04250 40.909 110 49 4 82 176 109 217 4.84e-16 73.2
MS.gene07372.t1 AT4G14550 34.058 138 65 6 64 176 80 216 5.55e-16 73.2
MS.gene07372.t1 AT1G04100 37.864 103 50 2 82 170 150 252 2.80e-15 71.6
MS.gene07372.t1 AT3G04730 37.143 105 53 2 85 176 120 224 3.19e-15 71.2
MS.gene07372.t1 AT3G23050 37.143 105 53 4 85 176 126 230 8.46e-15 70.1
MS.gene07372.t1 AT1G15580 39.535 86 48 2 85 170 76 157 3.18e-14 67.0
MS.gene07372.t1 AT4G23980 32.692 104 63 1 65 168 505 601 5.40e-13 66.6
MS.gene07372.t1 AT4G23980 32.692 104 63 1 65 168 503 599 5.45e-13 66.6
MS.gene07372.t1 AT2G01200 35.644 101 63 1 70 170 85 183 7.06e-12 61.6
MS.gene07372.t1 AT2G01200 35.644 101 63 1 70 170 85 183 7.06e-12 61.6
MS.gene07372.t1 AT4G32280 36.782 87 47 2 85 170 119 198 3.25e-11 60.1
MS.gene07372.t1 AT4G32280 36.782 87 47 2 85 170 161 240 6.03e-11 59.7

Find 41 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACCGCCTTGTTGCTGAAT+TGG 0.337037 1.2:-64660153 None:intergenic
CTCAATTTGCTAGCTCATAA+TGG 0.373904 1.2:+64660252 MS.gene07372:CDS
TCACAAGGGTTGATGCATTC+GGG 0.385803 1.2:+64661058 MS.gene07372:CDS
TGCAGAAGGAGACTTGATTA+TGG 0.392903 1.2:+64660482 MS.gene07372:CDS
ATCACAAGGGTTGATGCATT+CGG 0.400585 1.2:+64661057 MS.gene07372:CDS
TACATGGAAGGCATTCCAAT+TGG 0.410476 1.2:+64660222 MS.gene07372:CDS
AAGGAGACTTGATTATGGTT+GGG 0.414355 1.2:+64660487 MS.gene07372:CDS
TATGGTTGGGGATGTCCCTT+GGG 0.419336 1.2:+64660500 MS.gene07372:CDS
AAATTGAGCTTTCTCCCAAT+TGG 0.430798 1.2:-64660237 None:intergenic
TTATGGTTGGGGATGTCCCT+TGG 0.433671 1.2:+64660499 MS.gene07372:CDS
TACAATTCCACAATGGGAAA+AGG 0.446881 1.2:+64659864 None:intergenic
CCTTCTTCTACTGTTGGAAG+AGG 0.459161 1.2:-64659904 None:intergenic
GGAGTGGTAATTACATAGAA+TGG 0.466849 1.2:-64660319 None:intergenic
GAAGGAGACTTGATTATGGT+TGG 0.467457 1.2:+64660486 MS.gene07372:CDS
ACATGGAAGGCATTCCAATT+GGG 0.472520 1.2:+64660223 MS.gene07372:CDS
GGAAGAGGAGGAAGAAGAAG+TGG 0.473631 1.2:-64659889 None:intergenic
GATAGAGGATGAAACATTAG+AGG 0.481392 1.2:-64659937 None:intergenic
AGGAGACTTGATTATGGTTG+GGG 0.490396 1.2:+64660488 MS.gene07372:CDS
CTTCTTTGTGAAGGTTTACA+TGG 0.492048 1.2:+64660206 MS.gene07372:CDS
CTCAATCCAAGGTTAAGATC+AGG 0.506435 1.2:-64659993 None:intergenic
CATGTAAACCTTCACAAAGA+AGG 0.519682 1.2:-64660205 None:intergenic
TTTGTGAAGGTTTACATGGA+AGG 0.523480 1.2:+64660210 MS.gene07372:CDS
ATGTTTCCTTCTTCTACTGT+TGG 0.532208 1.2:-64659910 None:intergenic
TTTGTCATATTAGGGGACAT+TGG 0.532866 1.2:+64660127 MS.gene07372:intron
CCTCTTCCAACAGTAGAAGA+AGG 0.535777 1.2:+64659904 MS.gene07372:CDS
GTTAAGTAAACTTACTCCCA+AGG 0.550745 1.2:-64660516 None:intergenic
TTCTTTAACATACCTTGAGG+TGG 0.555886 1.2:-64660048 None:intergenic
TCTTCTACTGTTGGAAGAGG+AGG 0.561746 1.2:-64659901 None:intergenic
CAACAGTGCCTTCTTTGTGA+AGG 0.564852 1.2:+64660197 MS.gene07372:CDS
ATCAACATATTGTTGAGTGG+TGG 0.579143 1.2:-64660021 None:intergenic
TCATAATGGCTATCACGAGT+TGG 0.585534 1.2:+64660266 MS.gene07372:CDS
ATGTTGATTATTCCACCTCA+AGG 0.585626 1.2:+64660036 MS.gene07372:CDS
TGTTCTTATCATCTGTGAAG+AGG 0.588185 1.2:+64661028 MS.gene07372:CDS
TTAAGTAAACTTACTCCCAA+GGG 0.604202 1.2:-64660515 None:intergenic
TGAAGAGGTTGAAGATCACA+AGG 0.619538 1.2:+64661043 MS.gene07372:CDS
TGGTGGAAATGCTCAATCCA+AGG 0.621212 1.2:-64660004 None:intergenic
TTAACTTATGAAGATGCAGA+AGG 0.627924 1.2:+64660468 MS.gene07372:CDS
TGGCAACCAATTCAGCAACA+AGG 0.686483 1.2:+64660147 MS.gene07372:CDS
ATAATCAACATATTGTTGAG+TGG 0.703279 1.2:-64660024 None:intergenic
CAACCAATTCAGCAACAAGG+CGG 0.746050 1.2:+64660150 MS.gene07372:CDS
GAAGAGGTTGAAGATCACAA+GGG 0.757105 1.2:+64661044 MS.gene07372:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAATTAATTTACAAAAT+TGG - chr1.2:64660981-64661000 None:intergenic 10.0%
!!! ATTTTGTAAATTAATTGATT+TGG + chr1.2:64660981-64661000 MS.gene07372:intron 10.0%
!!! CATTTTTACTTCTTTTTTTT+TGG + chr1.2:64660354-64660373 MS.gene07372:intron 15.0%
!! AAATTCACTTAGAATTGAAA+TGG - chr1.2:64660564-64660583 None:intergenic 20.0%
!! AAGTAAAAATGCATATATGA+GGG - chr1.2:64660345-64660364 None:intergenic 20.0%
!! AATTCACTTAGAATTGAAAT+GGG - chr1.2:64660563-64660582 None:intergenic 20.0%
!! ATTTCAATTCTAAGTGAATT+TGG + chr1.2:64660563-64660582 MS.gene07372:intron 20.0%
!!! ATTGTGTTATTTGTCATATT+AGG + chr1.2:64660118-64660137 MS.gene07372:intron 20.0%
!!! TTGATTTGGTACAATTTTTT+TGG + chr1.2:64660995-64661014 MS.gene07372:intron 20.0%
!!! TTGTGTTATTTGTCATATTA+GGG + chr1.2:64660119-64660138 MS.gene07372:intron 20.0%
!!! TTTTGGTAAAATGAGTAATA+TGG + chr1.2:64660371-64660390 MS.gene07372:intron 20.0%
! AGTAAAAATGCATATATGAG+GGG - chr1.2:64660344-64660363 None:intergenic 25.0%
! ATAATCAACATATTGTTGAG+TGG - chr1.2:64660027-64660046 None:intergenic 25.0%
! GAAGTAAAAATGCATATATG+AGG - chr1.2:64660346-64660365 None:intergenic 25.0%
!! AAGTGAATTTGGCATAATTT+TGG + chr1.2:64660574-64660593 MS.gene07372:intron 25.0%
!! TTTATGGTAACTGTGATTTT+CGG - chr1.2:64660906-64660925 None:intergenic 25.0%
!! TTTTTCTTTAACATACCTTG+AGG - chr1.2:64660054-64660073 None:intergenic 25.0%
!!! ATTTTGACACAAGTTACATT+CGG + chr1.2:64660852-64660871 MS.gene07372:intron 25.0%
!!! TGTGTTATTTGTCATATTAG+GGG + chr1.2:64660120-64660139 MS.gene07372:intron 25.0%
CGATGAGTTTGGTAAATTTA+TGG - chr1.2:64660922-64660941 None:intergenic 30.0%
GACACAAACATAGTAGTTTA+AGG - chr1.2:64660083-64660102 None:intergenic 30.0%
GTAAAAATGCATATATGAGG+GGG - chr1.2:64660343-64660362 None:intergenic 30.0%
TTAACTTATGAAGATGCAGA+AGG + chr1.2:64660468-64660487 MS.gene07372:CDS 30.0%
TTAAGTAAACTTACTCCCAA+GGG - chr1.2:64660518-64660537 None:intergenic 30.0%
TTGTGTCAAAATCACACTAA+GGG - chr1.2:64660844-64660863 None:intergenic 30.0%
!!! TACAATTTTTTTGGCCATGT+AGG + chr1.2:64661004-64661023 MS.gene07372:intron 30.0%
AAATTGAGCTTTCTCCCAAT+TGG - chr1.2:64660240-64660259 None:intergenic 35.0%
AAGGAGACTTGATTATGGTT+GGG + chr1.2:64660487-64660506 MS.gene07372:CDS 35.0%
ATCAACATATTGTTGAGTGG+TGG - chr1.2:64660024-64660043 None:intergenic 35.0%
ATGTTTCCTTCTTCTACTGT+TGG - chr1.2:64659913-64659932 None:intergenic 35.0%
CATGTAAACCTTCACAAAGA+AGG - chr1.2:64660208-64660227 None:intergenic 35.0%
CTTCTTTGTGAAGGTTTACA+TGG + chr1.2:64660206-64660225 MS.gene07372:CDS 35.0%
CTTGTGTCAAAATCACACTA+AGG - chr1.2:64660845-64660864 None:intergenic 35.0%
GATAGAGGATGAAACATTAG+AGG - chr1.2:64659940-64659959 None:intergenic 35.0%
GATGATAAGAACATCCTACA+TGG - chr1.2:64661021-64661040 None:intergenic 35.0%
GGAAAAAGATGTTGTTGATC+AGG - chr1.2:64659975-64659994 None:intergenic 35.0%
GGAGTGGTAATTACATAGAA+TGG - chr1.2:64660322-64660341 None:intergenic 35.0%
GTTAAGTAAACTTACTCCCA+AGG - chr1.2:64660519-64660538 None:intergenic 35.0%
GTTTGAATTGACGATGAGTT+TGG - chr1.2:64660933-64660952 None:intergenic 35.0%
TGTTCTTATCATCTGTGAAG+AGG + chr1.2:64661028-64661047 MS.gene07372:CDS 35.0%
TTCTTTAACATACCTTGAGG+TGG - chr1.2:64660051-64660070 None:intergenic 35.0%
TTTGTCATATTAGGGGACAT+TGG + chr1.2:64660127-64660146 MS.gene07372:intron 35.0%
TTTGTGAAGGTTTACATGGA+AGG + chr1.2:64660210-64660229 MS.gene07372:CDS 35.0%
! ATGTTGATTATTCCACCTCA+AGG + chr1.2:64660036-64660055 MS.gene07372:CDS 35.0%
! CTTTTTCCTGATCTTAACCT+TGG + chr1.2:64659987-64660006 MS.gene07372:CDS 35.0%
!! AGGATTTTGATGTGTGATAG+AGG - chr1.2:64659955-64659974 None:intergenic 35.0%
!! CTCAATTTGCTAGCTCATAA+TGG + chr1.2:64660252-64660271 MS.gene07372:CDS 35.0%
!! GGCATAATTTTGGTACGTTA+GGG + chr1.2:64660584-64660603 MS.gene07372:intron 35.0%
!! TGGCATAATTTTGGTACGTT+AGG + chr1.2:64660583-64660602 MS.gene07372:intron 35.0%
!!! GTGACTTTGTTATTTTGCCA+GGG + chr1.2:64660403-64660422 MS.gene07372:intron 35.0%
!!! TGACTTTGTTATTTTGCCAG+GGG + chr1.2:64660404-64660423 MS.gene07372:intron 35.0%
!!! TGTGACTTTGTTATTTTGCC+AGG + chr1.2:64660402-64660421 MS.gene07372:intron 35.0%
AGGAGACTTGATTATGGTTG+GGG + chr1.2:64660488-64660507 MS.gene07372:CDS 40.0%
CTCAATCCAAGGTTAAGATC+AGG - chr1.2:64659996-64660015 None:intergenic 40.0%
GAAGAGGTTGAAGATCACAA+GGG + chr1.2:64661044-64661063 MS.gene07372:CDS 40.0%
GAAGGAGACTTGATTATGGT+TGG + chr1.2:64660486-64660505 MS.gene07372:CDS 40.0%
TCATAATGGCTATCACGAGT+TGG + chr1.2:64660266-64660285 MS.gene07372:CDS 40.0%
TGAAGAGGTTGAAGATCACA+AGG + chr1.2:64661043-64661062 MS.gene07372:CDS 40.0%
TGCAGAAGGAGACTTGATTA+TGG + chr1.2:64660482-64660501 MS.gene07372:CDS 40.0%
! AATCACACTAAGGGTGTGTT+TGG - chr1.2:64660835-64660854 None:intergenic 40.0%
! ATCACACTAAGGGTGTGTTT+GGG - chr1.2:64660834-64660853 None:intergenic 40.0%
! GGTAACTGTGATTTTCGGTT+TGG - chr1.2:64660901-64660920 None:intergenic 40.0%
!! ACATGGAAGGCATTCCAATT+GGG + chr1.2:64660223-64660242 MS.gene07372:CDS 40.0%
!! ATCACAAGGGTTGATGCATT+CGG + chr1.2:64661057-64661076 MS.gene07372:CDS 40.0%
!! TACATGGAAGGCATTCCAAT+TGG + chr1.2:64660222-64660241 MS.gene07372:CDS 40.0%
!!! ACTTTGTTATTTTGCCAGGG+GGG + chr1.2:64660406-64660425 MS.gene07372:intron 40.0%
!!! GACTTTGTTATTTTGCCAGG+GGG + chr1.2:64660405-64660424 MS.gene07372:intron 40.0%
AATGCATATATGAGGGGGAG+TGG - chr1.2:64660338-64660357 None:intergenic 45.0%
CAACAGTGCCTTCTTTGTGA+AGG + chr1.2:64660197-64660216 MS.gene07372:CDS 45.0%
CAACCAATTCAGCAACAAGG+CGG + chr1.2:64660150-64660169 MS.gene07372:CDS 45.0%
CCTCTTCCAACAGTAGAAGA+AGG + chr1.2:64659904-64659923 MS.gene07372:CDS 45.0%
CCTTCTTCTACTGTTGGAAG+AGG - chr1.2:64659907-64659926 None:intergenic 45.0%
TCTTCTACTGTTGGAAGAGG+AGG - chr1.2:64659904-64659923 None:intergenic 45.0%
TGGCAACCAATTCAGCAACA+AGG + chr1.2:64660147-64660166 MS.gene07372:CDS 45.0%
TGGTACGTTAGGGTGTGTTT+GGG + chr1.2:64660594-64660613 MS.gene07372:intron 45.0%
TGGTGGAAATGCTCAATCCA+AGG - chr1.2:64660007-64660026 None:intergenic 45.0%
TGTGTTTGGGAAGAGGGTTT+AGG + chr1.2:64660607-64660626 MS.gene07372:intron 45.0%
TGTGTTTGGGAAGAGGGTTT+AGG - chr1.2:64660626-64660607 None:intergenic 45.0%
TTAGGGTGTGTTTGGGAAGA+GGG + chr1.2:64660601-64660620 MS.gene07372:intron 45.0%
TTGGTACGTTAGGGTGTGTT+TGG + chr1.2:64660593-64660612 MS.gene07372:intron 45.0%
TTTGGGAAGAGGGTTTAGGA+GGG + chr1.2:64660611-64660630 MS.gene07372:intron 45.0%
TTTGGGAAGAGGGTTTAGGA+GGG - chr1.2:64660630-64660611 None:intergenic 45.0%
! TAAGGGTGTGTTTGGGAAGA+GGG - chr1.2:64660827-64660846 None:intergenic 45.0%
!! TCACAAGGGTTGATGCATTC+GGG + chr1.2:64661058-64661077 MS.gene07372:CDS 45.0%
AAGAGGGTTTAGGAGGGGAA+GGG + chr1.2:64660617-64660636 MS.gene07372:intron 50.0%
AAGAGGGTTTAGGAGGGGAA+GGG - chr1.2:64660636-64660617 None:intergenic 50.0%
GGAAGAGGAGGAAGAAGAAG+TGG - chr1.2:64659892-64659911 None:intergenic 50.0%
GTTAGGGTGTGTTTGGGAAG+AGG + chr1.2:64660600-64660619 MS.gene07372:intron 50.0%
GTTTGGGAAGAGGGTTTAGG+AGG + chr1.2:64660610-64660629 MS.gene07372:intron 50.0%
GTTTGGGAAGAGGGTTTAGG+AGG - chr1.2:64660629-64660610 None:intergenic 50.0%
TATGGTTGGGGATGTCCCTT+GGG + chr1.2:64660500-64660519 MS.gene07372:CDS 50.0%
TTATGGTTGGGGATGTCCCT+TGG + chr1.2:64660499-64660518 MS.gene07372:CDS 50.0%
TTGGGAAGAGGGTTTAGGAG+GGG + chr1.2:64660612-64660631 MS.gene07372:intron 50.0%
TTGGGAAGAGGGTTTAGGAG+GGG - chr1.2:64660631-64660612 None:intergenic 50.0%
! CTAAGGGTGTGTTTGGGAAG+AGG - chr1.2:64660828-64660847 None:intergenic 50.0%
! TCACCGCCTTGTTGCTGAAT+TGG - chr1.2:64660156-64660175 None:intergenic 50.0%
GAAGAGGGTTTAGGAGGGGA+AGG + chr1.2:64660616-64660635 MS.gene07372:intron 55.0%
GAAGAGGGTTTAGGAGGGGA+AGG - chr1.2:64660635-64660616 None:intergenic 55.0%
TTTGCCAGGGGGGACTGAAA+TGG + chr1.2:64660416-64660435 MS.gene07372:intron 55.0%
AGGGTTTAGGAGGGGAAGGG+AGG + chr1.2:64660620-64660639 MS.gene07372:intron 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG - chr1.2:64660639-64660620 None:intergenic 60.0%
CCAGGGGGGACTGAAATGGA+TGG + chr1.2:64660420-64660439 MS.gene07372:intron 60.0%
CCATCCATTTCAGTCCCCCC+TGG - chr1.2:64660423-64660442 None:intergenic 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG + chr1.2:64660621-64660640 MS.gene07372:intron 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG - chr1.2:64660640-64660621 None:intergenic 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG + chr1.2:64660622-64660641 MS.gene07372:intron 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG - chr1.2:64660641-64660622 None:intergenic 60.0%
TAGGAGGGGAAGGGAGGGGA+GGG + chr1.2:64660626-64660645 MS.gene07372:intron 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG + chr1.2:64660625-64660644 MS.gene07372:intron 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG - chr1.2:64660644-64660625 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 64659876 64661086 64659876 ID=MS.gene07372
chr1.2 mRNA 64659876 64661086 64659876 ID=MS.gene07372.t1;Parent=MS.gene07372
chr1.2 exon 64659876 64660057 64659876 ID=MS.gene07372.t1.exon1;Parent=MS.gene07372.t1
chr1.2 CDS 64659876 64660057 64659876 ID=cds.MS.gene07372.t1;Parent=MS.gene07372.t1
chr1.2 exon 64660140 64660327 64660140 ID=MS.gene07372.t1.exon2;Parent=MS.gene07372.t1
chr1.2 CDS 64660140 64660327 64660140 ID=cds.MS.gene07372.t1;Parent=MS.gene07372.t1
chr1.2 exon 64660424 64660523 64660424 ID=MS.gene07372.t1.exon3;Parent=MS.gene07372.t1
chr1.2 CDS 64660424 64660523 64660424 ID=cds.MS.gene07372.t1;Parent=MS.gene07372.t1
chr1.2 exon 64661026 64661086 64661026 ID=MS.gene07372.t1.exon4;Parent=MS.gene07372.t1
chr1.2 CDS 64661026 64661086 64661026 ID=cds.MS.gene07372.t1;Parent=MS.gene07372.t1
Gene Sequence

>MS.gene07372

ATGGGAAAAGGTTCCACTTCTTCTTCCTCCTCTTCCAACAGTAGAAGAAGGAAACATAATTCCTCTAATGTTTCATCCTCTATCACACATCAAAATCCTGATCAACAACATCTTTTTCCTGATCTTAACCTTGGATTGAGCATTTCCACCACTCAACAATATGTTGATTATTCCACCTCAAGGTATGTTAAAGAAAAACATGAACCTTAAACTACTATGTTTGTGTCATCACTTTATTAAATATTGTGTTATTTGTCATATTAGGGGACATTGGCAACCAATTCAGCAACAAGGCGGTGAAGTAAATGATTGCAGTGATTACAACAGTGCCTTCTTTGTGAAGGTTTACATGGAAGGCATTCCAATTGGGAGAAAGCTCAATTTGCTAGCTCATAATGGCTATCACGAGTTGGTTAATACACTTGAACAAATGTTTGACACAACCATTCTATGTAATTACCACTCCCCCTCATATATGCATTTTTACTTCTTTTTTTTTGGTAAAATGAGTAATATGGATTAATAATGTGACTTTGTTATTTTGCCAGGGGGGACTGAAATGGATGGAGTGCAATCAGAGAGATGTCATGTGTTAACTTATGAAGATGCAGAAGGAGACTTGATTATGGTTGGGGATGTCCCTTGGGAGTAAGTTTACTTAACAATAACTTTTTCACAGTTCAGCCCATTTCAATTCTAAGTGAATTTGGCATAATTTTGGTACGTTAGGGTGTGTTTGGGAAGAGGGTTTAGGAGGGGAAGGGAGGGGAGGGCTCACTTTTATTTTTTAAATTATGAACAACGTAAAATGTCTTTTTAAGATAAATTAAGTGTTTTTGAAGTATTATATGATCATTTATCATGTTAATTCAATTTTTTAAAAATCATTGTATAATGTCTTTAAATTAAAAAAGAAATGTAAGTCCTCCCCTCCCTTCCCCTCCTAAACCCTCTTCCCAAACACACCCTTAGTGTGATTTTGACACAAGTTACATTCGGAAACTTAAACAAAATCAGCGTTGCCAAACCGAAAATCACAGTTACCATAAATTTACCAAACTCATCGTCAATTCAAACATGTTATAAAACATTACATTATCTTCCAATTTTGTAAATTAATTGATTTGGTACAATTTTTTTGGCCATGTAGGATGTTCTTATCATCTGTGAAGAGGTTGAAGATCACAAGGGTTGATGCATTCGGGCTTTAA
Protein sequence

>MS.gene07372.t1

MGKGSTSSSSSSNSRRRKHNSSNVSSSITHQNPDQQHLFPDLNLGLSISTTQQYVDYSTSRGHWQPIQQQGGEVNDCSDYNSAFFVKVYMEGIPIGRKLNLLAHNGYHELVNTLEQMFDTTILWGTEMDGVQSERCHVLTYEDAEGDLIMVGDVPWEMFLSSVKRLKITRVDAFGL