Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074002.t1 | AFK38998.1 | 97.3 | 74 | 2 | 0 | 127 | 200 | 80 | 153 | 3.50E-33 | 151.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074002.t1 | A0A1S4AX27 | 71.6 | 74 | 21 | 0 | 127 | 200 | 81 | 154 | 4.6e-26 | 119.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074002.t1 | I3SFF6 | 97.3 | 74 | 2 | 0 | 127 | 200 | 80 | 153 | 2.5e-33 | 151.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene074002 | 0.804395 | 2.21E-49 | -1.69E-46 |
| MS.gene05134 | MS.gene074002 | 0.801411 | 9.12E-49 | -1.69E-46 |
| MS.gene051452 | MS.gene074002 | 0.819509 | 1.12E-52 | -1.69E-46 |
| MS.gene053008 | MS.gene074002 | 0.810355 | 1.20E-50 | -1.69E-46 |
| MS.gene05517 | MS.gene074002 | 0.822478 | 2.32E-53 | -1.69E-46 |
| MS.gene055623 | MS.gene074002 | 0.819116 | 1.38E-52 | -1.69E-46 |
| MS.gene057140 | MS.gene074002 | 0.808932 | 2.43E-50 | -1.69E-46 |
| MS.gene059830 | MS.gene074002 | 0.811626 | 6.37E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074002.t1 | MTR_0167s0040 | 78.378 | 111 | 23 | 1 | 48 | 158 | 1 | 110 | 9.70e-35 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074002.t1 | AT1G79200 | 70.270 | 74 | 22 | 0 | 127 | 200 | 85 | 158 | 8.37e-34 | 118 |
Find 33 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCCTCGCACAGCCCATAAA+TGG | 0.229703 | 2.1:+29855679 | MS.gene074002:CDS |
| ACCCTTGTCATATTTATCTT+TGG | 0.255453 | 2.1:-29852379 | None:intergenic |
| TTCGTTTCAACTTTCAATTT+TGG | 0.259459 | 2.1:+29851944 | MS.gene074002:CDS |
| TCCTCTTTCTGTTCCGTCGC+CGG | 0.319749 | 2.1:-29851601 | None:intergenic |
| TCCTCTTTCTGTTCCGTCGC+CGG | 0.319749 | 2.1:-29851662 | None:intergenic |
| TTTGTCAAAGCTTGGAATAA+AGG | 0.336053 | 2.1:+29855618 | MS.gene074002:CDS |
| GGTGTGATGGAGGATGTTTC+CGG | 0.368146 | 2.1:+29851582 | None:intergenic |
| GGTGTGATGGAGGATGTTTC+CGG | 0.368146 | 2.1:+29851643 | MS.gene074002:CDS |
| AGGAAAAGAAGAGCAGAAAG+AGG | 0.409042 | 2.1:+29852322 | MS.gene074002:CDS |
| TTGCAGAATTTGTCAAAGCT+TGG | 0.436101 | 2.1:+29855610 | MS.gene074002:CDS |
| AAAAGAAGTACCTTGAGATT+CGG | 0.437431 | 2.1:-29852017 | None:intergenic |
| AGAGGGAAAAGAAAGAGAAA+AGG | 0.452527 | 2.1:+29852340 | MS.gene074002:CDS |
| ATTCTTCTCTTCTTTCAGCC+AGG | 0.510461 | 2.1:-29855544 | None:intergenic |
| CTTGAATCGAATTACTATGA+AGG | 0.515517 | 2.1:+29855645 | MS.gene074002:CDS |
| TCCGGCGACGGAACAGAAAG+AGG | 0.516242 | 2.1:+29851600 | MS.gene074002:CDS |
| TCCGGCGACGGAACAGAAAG+AGG | 0.516242 | 2.1:+29851661 | MS.gene074002:CDS |
| ATGGAGGATGTTTCCGGCGA+CGG | 0.518824 | 2.1:+29851588 | MS.gene074002:CDS |
| ATGGAGGATGTTTCCGGCGA+CGG | 0.518824 | 2.1:+29851649 | MS.gene074002:CDS |
| GGAAAAGAAAGAGAAAAGGA+AGG | 0.519175 | 2.1:+29852344 | MS.gene074002:CDS |
| GGAAAAGAAGAGCAGAAAGA+GGG | 0.525731 | 2.1:+29852323 | MS.gene074002:CDS |
| AGAGGAAGAAAGTGTGTTGA+CGG | 0.551677 | 2.1:+29851618 | MS.gene074002:CDS |
| TGTGTTGACGGACGGTGTGA+TGG | 0.576645 | 2.1:+29851630 | MS.gene074002:CDS |
| CAGATGAGAAGAAAAGCAAG+AGG | 0.577750 | 2.1:+29852274 | MS.gene074002:intron |
| AGAATAACGAGTTTGCTACC+TGG | 0.588635 | 2.1:+29855526 | MS.gene074002:CDS |
| TTCCATTTATGGGCTGTGCG+AGG | 0.589094 | 2.1:-29855681 | None:intergenic |
| TCTTCGCAATCCGAATCTCA+AGG | 0.596947 | 2.1:+29852007 | MS.gene074002:CDS |
| CTTAGCAAAATAGTCATCAC+CGG | 0.600758 | 2.1:-29855505 | None:intergenic |
| AACTGTAGATGATGATGATG+AGG | 0.616853 | 2.1:+29852302 | MS.gene074002:CDS |
| CAGCAAAAGTGAAAGAAACA+TGG | 0.625791 | 2.1:+29854706 | MS.gene074002:CDS |
| TTCCAAAGATAAATATGACA+AGG | 0.629251 | 2.1:+29852377 | MS.gene074002:CDS |
| GAAGAAAGTGTGTTGACGGA+CGG | 0.638532 | 2.1:+29851622 | MS.gene074002:CDS |
| GTTGACGGACGGTGTGATGG+AGG | 0.650147 | 2.1:+29851633 | MS.gene074002:CDS |
| TCCAAAGATAAATATGACAA+GGG | 0.663109 | 2.1:+29852378 | MS.gene074002:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATTTCCAAAATTAA+TGG | + | chr2.1:29853370-29853389 | MS.gene074002:intron | 10.0% |
| !! | AATATATTTCCAAAATTAAT+GGG | + | chr2.1:29853371-29853390 | MS.gene074002:intron | 10.0% |
| !! | ATATATATATAAAAGATTCA+AGG | - | chr2.1:29853165-29853184 | None:intergenic | 10.0% |
| !! | TATAAATTGTTAATAATGTT+AGG | + | chr2.1:29852237-29852256 | MS.gene074002:intron | 10.0% |
| !! | ATATGTTCTGATAAAAAAAA+GGG | - | chr2.1:29853991-29854010 | None:intergenic | 15.0% |
| !! | CAAAATAGTGAAATTAAATT+GGG | + | chr2.1:29852178-29852197 | MS.gene074002:intron | 15.0% |
| !! | TAAACCTAAAAATGATTTAT+AGG | - | chr2.1:29853276-29853295 | None:intergenic | 15.0% |
| !! | TCAAAATAGTGAAATTAAAT+TGG | + | chr2.1:29852177-29852196 | MS.gene074002:intron | 15.0% |
| !! | TGGAATAAAAGTAAATAATT+AGG | + | chr2.1:29852096-29852115 | MS.gene074002:intron | 15.0% |
| !!! | ATTACCTATAAATCATTTTT+AGG | + | chr2.1:29853269-29853288 | MS.gene074002:intron | 15.0% |
| !!! | CTGAATTTGTTTATATTTTT+AGG | + | chr2.1:29854928-29854947 | MS.gene074002:intron | 15.0% |
| !! | AAAATGTATTTAAAAGTAGG+AGG | + | chr2.1:29853713-29853732 | MS.gene074002:intron | 20.0% |
| !! | AACTGAATTATTCTAAACAA+AGG | + | chr2.1:29852926-29852945 | MS.gene074002:intron | 20.0% |
| !! | ATTTCTGTAACAAAATCAAA+TGG | + | chr2.1:29852497-29852516 | MS.gene074002:intron | 20.0% |
| !! | CTGAAAATGTATTTAAAAGT+AGG | + | chr2.1:29853710-29853729 | MS.gene074002:intron | 20.0% |
| !! | GATATGTTCTGATAAAAAAA+AGG | - | chr2.1:29853992-29854011 | None:intergenic | 20.0% |
| !! | TCATAGAAATGAAGTTATAT+TGG | + | chr2.1:29854528-29854547 | MS.gene074002:intron | 20.0% |
| !! | TCTACTATATCTCTTAAAAA+AGG | + | chr2.1:29855334-29855353 | MS.gene074002:intron | 20.0% |
| !! | TTCTATCTTAAAAATTGAGT+TGG | - | chr2.1:29853782-29853801 | None:intergenic | 20.0% |
| !! | TTTGATTGGATATAGATTAT+GGG | + | chr2.1:29853560-29853579 | MS.gene074002:intron | 20.0% |
| !!! | AAAATGATTGCTTAATGTTT+TGG | - | chr2.1:29853216-29853235 | None:intergenic | 20.0% |
| !!! | ACATTTTTATAATCATATGC+AGG | + | chr2.1:29854562-29854581 | MS.gene074002:intron | 20.0% |
| !!! | ACTTTTTGATTTTCCATTTA+TGG | - | chr2.1:29855695-29855714 | None:intergenic | 20.0% |
| !!! | CATATCTTTATTTCAAATGT+AGG | + | chr2.1:29855467-29855486 | MS.gene074002:intron | 20.0% |
| !!! | CTACTTTTAAATACATTTTC+AGG | - | chr2.1:29853712-29853731 | None:intergenic | 20.0% |
| !!! | CTTTTTGATTTTCCATTTAT+GGG | - | chr2.1:29855694-29855713 | None:intergenic | 20.0% |
| !!! | GCTGTTATATTTTCTTTTTA+CGG | + | chr2.1:29854838-29854857 | MS.gene074002:intron | 20.0% |
| !!! | TGGATTTCATTTTTGTTAAT+GGG | + | chr2.1:29852705-29852724 | MS.gene074002:intron | 20.0% |
| !!! | TTGGATTTCATTTTTGTTAA+TGG | + | chr2.1:29852704-29852723 | MS.gene074002:intron | 20.0% |
| ! | AAAACCGATATGTAAAAAGA+AGG | - | chr2.1:29853742-29853761 | None:intergenic | 25.0% |
| ! | AAAATATAACAGCACCAAAA+AGG | - | chr2.1:29854831-29854850 | None:intergenic | 25.0% |
| ! | AGCATTATTAGTAGTAGTAT+TGG | - | chr2.1:29854750-29854769 | None:intergenic | 25.0% |
| ! | AGTAGTTAGTAATGCTTAAT+TGG | + | chr2.1:29852600-29852619 | MS.gene074002:intron | 25.0% |
| ! | GACTACTTCATATAAATAAC+AGG | - | chr2.1:29855395-29855414 | None:intergenic | 25.0% |
| ! | GATACATGATTGTAAAACAA+AGG | - | chr2.1:29852659-29852678 | None:intergenic | 25.0% |
| ! | GATATTCTACATTATAGAAC+TGG | - | chr2.1:29853239-29853258 | None:intergenic | 25.0% |
| ! | GCATTATTAGTAGTAGTATT+GGG | - | chr2.1:29854749-29854768 | None:intergenic | 25.0% |
| ! | GTTTGATTGGATATAGATTA+TGG | + | chr2.1:29853559-29853578 | MS.gene074002:intron | 25.0% |
| ! | TAAAAAATGGCAGAATGAAA+AGG | - | chr2.1:29852068-29852087 | None:intergenic | 25.0% |
| ! | TAAAGTTGTATGTGTTGTAA+GGG | + | chr2.1:29853843-29853862 | MS.gene074002:intron | 25.0% |
| ! | TAAATTTGATTCAGACTCTT+AGG | + | chr2.1:29852430-29852449 | MS.gene074002:intron | 25.0% |
| ! | TATAAACAAATTCAGCAGAA+AGG | - | chr2.1:29854923-29854942 | None:intergenic | 25.0% |
| ! | TCCAAAGATAAATATGACAA+GGG | + | chr2.1:29852378-29852397 | MS.gene074002:CDS | 25.0% |
| ! | TTACCAATTTACAAATGTCT+AGG | - | chr2.1:29852810-29852829 | None:intergenic | 25.0% |
| ! | TTCCAAAGATAAATATGACA+AGG | + | chr2.1:29852377-29852396 | MS.gene074002:CDS | 25.0% |
| ! | TTCCAATACACAGTAAAAAA+TGG | - | chr2.1:29852081-29852100 | None:intergenic | 25.0% |
| ! | TTCTATAATGTAGAATATCC+AGG | + | chr2.1:29853240-29853259 | MS.gene074002:intron | 25.0% |
| ! | TTGAATGTAGAATTCATGTT+AGG | + | chr2.1:29853133-29853152 | MS.gene074002:intron | 25.0% |
| !! | ACAAAATCGATTTATAAGGT+GGG | - | chr2.1:29854195-29854214 | None:intergenic | 25.0% |
| !! | ACCTTATAAGTCAATTTTGT+AGG | + | chr2.1:29854234-29854253 | MS.gene074002:intron | 25.0% |
| !! | AGGGAAATTTTTATCAAGTA+AGG | + | chr2.1:29855076-29855095 | MS.gene074002:intron | 25.0% |
| !! | ATACTTTGTCCCATTAATTT+TGG | - | chr2.1:29853383-29853402 | None:intergenic | 25.0% |
| !! | ATCAGAACATATCTAAGATA+AGG | + | chr2.1:29853801-29853820 | MS.gene074002:intron | 25.0% |
| !! | GTATCCTTCTTTTTACATAT+CGG | + | chr2.1:29853735-29853754 | MS.gene074002:intron | 25.0% |
| !! | GTGATAAAAGATTTTTCTTC+TGG | - | chr2.1:29854777-29854796 | None:intergenic | 25.0% |
| !! | TCAGAACATATCTAAGATAA+GGG | + | chr2.1:29853802-29853821 | MS.gene074002:intron | 25.0% |
| !! | TCTGAGATGTCTTTATAATT+AGG | + | chr2.1:29854122-29854141 | MS.gene074002:intron | 25.0% |
| !! | TTATTTATCTAGTGGTTTGT+TGG | + | chr2.1:29855435-29855454 | MS.gene074002:intron | 25.0% |
| !! | TTCGTTTCAACTTTCAATTT+TGG | + | chr2.1:29851944-29851963 | MS.gene074002:CDS | 25.0% |
| !! | TTTTCAAAGTGGTTTAGATT+GGG | + | chr2.1:29852863-29852882 | MS.gene074002:intron | 25.0% |
| !!! | ACCTTATAAATCGATTTTGT+CGG | + | chr2.1:29854195-29854214 | MS.gene074002:intron | 25.0% |
| !!! | AGACTTCTTTTGAAAAATTG+TGG | + | chr2.1:29855050-29855069 | MS.gene074002:intron | 25.0% |
| !!! | TTTTGAAAAATTGTGGATGA+GGG | + | chr2.1:29855057-29855076 | MS.gene074002:intron | 25.0% |
| !!! | TTTTTACATATCGGTTTTGT+AGG | + | chr2.1:29853744-29853763 | MS.gene074002:intron | 25.0% |
| AAGTTGAATTTGCAGTGAAA+TGG | - | chr2.1:29853439-29853458 | None:intergenic | 30.0% | |
| AATACACCGATGATTCAAAA+GGG | - | chr2.1:29853481-29853500 | None:intergenic | 30.0% | |
| AATTCAGTTAAGTAGAGACA+TGG | - | chr2.1:29852915-29852934 | None:intergenic | 30.0% | |
| ACCCTTGTCATATTTATCTT+TGG | - | chr2.1:29852382-29852401 | None:intergenic | 30.0% | |
| ATACGCATAAATAGATTGTC+TGG | + | chr2.1:29852732-29852751 | MS.gene074002:intron | 30.0% | |
| ATAGCAATAAGCTACCAAAA+GGG | + | chr2.1:29852569-29852588 | MS.gene074002:intron | 30.0% | |
| ATATCCCAATCTTAGAAGTT+TGG | - | chr2.1:29854277-29854296 | None:intergenic | 30.0% | |
| ATCAAGTAAGGTGACATTAA+TGG | + | chr2.1:29855088-29855107 | MS.gene074002:intron | 30.0% | |
| CAACCTAGACATTTGTAAAT+TGG | + | chr2.1:29852804-29852823 | MS.gene074002:intron | 30.0% | |
| CAATTTACAAATGTCTAGGT+TGG | - | chr2.1:29852806-29852825 | None:intergenic | 30.0% | |
| CAGCAAGTTTAACAAAATCA+CGG | + | chr2.1:29855197-29855216 | MS.gene074002:intron | 30.0% | |
| CTTGAATCGAATTACTATGA+AGG | + | chr2.1:29855645-29855664 | MS.gene074002:CDS | 30.0% | |
| GAATTTGAAGGTTCAAACAA+GGG | - | chr2.1:29851903-29851922 | None:intergenic | 30.0% | |
| GAGATGTCTTTATAATTAGG+AGG | + | chr2.1:29854125-29854144 | MS.gene074002:intron | 30.0% | |
| GATATAGTAGATATGCAGAA+TGG | - | chr2.1:29855325-29855344 | None:intergenic | 30.0% | |
| GTAAAGTTGTATGTGTTGTA+AGG | + | chr2.1:29853842-29853861 | MS.gene074002:intron | 30.0% | |
| GTGATTGCTTTATGTTTGAT+TGG | + | chr2.1:29853546-29853565 | MS.gene074002:intron | 30.0% | |
| TATAGCAATAAGCTACCAAA+AGG | + | chr2.1:29852568-29852587 | MS.gene074002:intron | 30.0% | |
| TATCCCAATCTTAGAAGTTT+GGG | - | chr2.1:29854276-29854295 | None:intergenic | 30.0% | |
| TGAATTTGAAGGTTCAAACA+AGG | - | chr2.1:29851904-29851923 | None:intergenic | 30.0% | |
| TGTTGAGGTTATTTATCTAG+TGG | + | chr2.1:29855427-29855446 | MS.gene074002:intron | 30.0% | |
| TTGGAGATTTAACAAAACCA+CGG | - | chr2.1:29855228-29855247 | None:intergenic | 30.0% | |
| TTTCAAAGTGGTTTAGATTG+GGG | + | chr2.1:29852864-29852883 | MS.gene074002:intron | 30.0% | |
| TTTGTCAAAGCTTGGAATAA+AGG | + | chr2.1:29855618-29855637 | MS.gene074002:CDS | 30.0% | |
| ! | AAGCCTTATAAAGATTACGT+TGG | + | chr2.1:29854465-29854484 | MS.gene074002:intron | 30.0% |
| ! | ACATAAGTCAGATTCTAAGA+TGG | - | chr2.1:29854401-29854420 | None:intergenic | 30.0% |
| ! | ATTTGGTATCAGATCCTTTT+TGG | + | chr2.1:29854814-29854833 | MS.gene074002:intron | 30.0% |
| ! | CAATTTTGTAGGCTTAAGTT+AGG | + | chr2.1:29854245-29854264 | MS.gene074002:intron | 30.0% |
| ! | GACAAAATCGATTTATAAGG+TGG | - | chr2.1:29854196-29854215 | None:intergenic | 30.0% |
| ! | GCCTACAAAATTGACTTATA+AGG | - | chr2.1:29854238-29854257 | None:intergenic | 30.0% |
| ! | GTTTTCAAAGTGGTTTAGAT+TGG | + | chr2.1:29852862-29852881 | MS.gene074002:intron | 30.0% |
| ! | TAGGAGTTAGAACTTTTGTA+AGG | + | chr2.1:29852999-29853018 | MS.gene074002:intron | 30.0% |
| ! | TTCAATTTTGGATCGATCAT+GGG | + | chr2.1:29851956-29851975 | MS.gene074002:CDS | 30.0% |
| ! | TTTCAATTTTGGATCGATCA+TGG | + | chr2.1:29851955-29851974 | MS.gene074002:CDS | 30.0% |
| ! | TTTTAAATGTCTCCTACAGT+GGG | + | chr2.1:29851845-29851864 | MS.gene074002:intron | 30.0% |
| ! | TTTTTAAATGTCTCCTACAG+TGG | + | chr2.1:29851844-29851863 | MS.gene074002:intron | 30.0% |
| !! | AAAAGAAGTACCTTGAGATT+CGG | - | chr2.1:29852020-29852039 | None:intergenic | 30.0% |
| !! | ACCTTATAAGTCGATTTTGT+CGG | + | chr2.1:29854156-29854175 | MS.gene074002:intron | 30.0% |
| !! | CCTTATAAATCGATTTTGTC+GGG | + | chr2.1:29854196-29854215 | MS.gene074002:intron | 30.0% |
| !! | CTTTTGAAAAATTGTGGATG+AGG | + | chr2.1:29855056-29855075 | MS.gene074002:intron | 30.0% |
| !! | GTTGTTTCTATAAGCTATCT+TGG | + | chr2.1:29852539-29852558 | MS.gene074002:intron | 30.0% |
| !! | TAGGATTTTCAAGAATTGTC+CGG | + | chr2.1:29855486-29855505 | MS.gene074002:intron | 30.0% |
| !! | TAGTGGTTTGTTGGTATTTA+TGG | + | chr2.1:29855444-29855463 | MS.gene074002:intron | 30.0% |
| !! | TAGTTTTTCTAGGAATCAAG+AGG | + | chr2.1:29853028-29853047 | MS.gene074002:intron | 30.0% |
| !!! | AAAGTGTGTTTTTTCTCTTC+TGG | + | chr2.1:29851687-29851706 | MS.gene074002:intron | 30.0% |
| !!! | AAGCAATGTTGTTTTCAAAG+TGG | + | chr2.1:29852852-29852871 | MS.gene074002:intron | 30.0% |
| !!! | ATTTTTAGGTTTACTGCTTG+AGG | + | chr2.1:29853283-29853302 | MS.gene074002:intron | 30.0% |
| !!! | TGCCATTTTTTACTGTGTAT+TGG | + | chr2.1:29852076-29852095 | MS.gene074002:intron | 30.0% |
| AAACCAATCATTTCACTCCA+TGG | + | chr2.1:29853515-29853534 | MS.gene074002:intron | 35.0% | |
| AAAGTTAGCTCAATGAGTGA+AGG | + | chr2.1:29854435-29854454 | MS.gene074002:intron | 35.0% | |
| ACATTAATGGTCATTCCTTG+AGG | + | chr2.1:29855101-29855120 | MS.gene074002:intron | 35.0% | |
| AGACCATATCTCATTGAATG+GGG | - | chr2.1:29854105-29854124 | None:intergenic | 35.0% | |
| AGAGGGAAAAGAAAGAGAAA+AGG | + | chr2.1:29852340-29852359 | MS.gene074002:CDS | 35.0% | |
| AGCCTCTTGTGTAAAAAACT+GGG | + | chr2.1:29853888-29853907 | MS.gene074002:intron | 35.0% | |
| ATGATTCAAAAGGGAAAGAC+AGG | - | chr2.1:29853472-29853491 | None:intergenic | 35.0% | |
| ATTAATGGTCATTCCTTGAG+GGG | + | chr2.1:29855103-29855122 | MS.gene074002:intron | 35.0% | |
| CAATACACCGATGATTCAAA+AGG | - | chr2.1:29853482-29853501 | None:intergenic | 35.0% | |
| CAGACCATATCTCATTGAAT+GGG | - | chr2.1:29854106-29854125 | None:intergenic | 35.0% | |
| CAGCAAAAGTGAAAGAAACA+TGG | + | chr2.1:29854706-29854725 | MS.gene074002:CDS | 35.0% | |
| CATTAATGGTCATTCCTTGA+GGG | + | chr2.1:29855102-29855121 | MS.gene074002:intron | 35.0% | |
| CTGATACCAAATATTCAGCA+TGG | - | chr2.1:29854806-29854825 | None:intergenic | 35.0% | |
| CTGCTTGAGTTTGAATTTGA+AGG | - | chr2.1:29851915-29851934 | None:intergenic | 35.0% | |
| CTTACAGTATACCAAATGGT+GGG | + | chr2.1:29853919-29853938 | MS.gene074002:intron | 35.0% | |
| CTTAGCAAAATAGTCATCAC+CGG | - | chr2.1:29855508-29855527 | None:intergenic | 35.0% | |
| CTTGTGTAAAAAACTGGGTA+AGG | + | chr2.1:29853893-29853912 | MS.gene074002:intron | 35.0% | |
| GAAAAACATTCTAGTGTGGA+GGG | + | chr2.1:29851744-29851763 | MS.gene074002:intron | 35.0% | |
| GAGCAAGGAAAAAACATGAA+AGG | + | chr2.1:29853310-29853329 | MS.gene074002:intron | 35.0% | |
| GATAATAGTCCGCTGTTATA+AGG | + | chr2.1:29853620-29853639 | MS.gene074002:intron | 35.0% | |
| GGAAAAGAAAGAGAAAAGGA+AGG | + | chr2.1:29852344-29852363 | MS.gene074002:CDS | 35.0% | |
| GTCTGAAAAACATTCTAGTG+TGG | + | chr2.1:29851740-29851759 | MS.gene074002:intron | 35.0% | |
| TATAGTTGAGCGACAAATCT+AGG | + | chr2.1:29853655-29853674 | MS.gene074002:intron | 35.0% | |
| TATCAGTATCCAGTTTGACA+TGG | + | chr2.1:29852969-29852988 | MS.gene074002:intron | 35.0% | |
| TCAGACCATATCTCATTGAA+TGG | - | chr2.1:29854107-29854126 | None:intergenic | 35.0% | |
| TCCTCATATGTTTGGATTTG+CGG | - | chr2.1:29855302-29855321 | None:intergenic | 35.0% | |
| TCTGTTATGCTACTCATGAT+CGG | + | chr2.1:29854017-29854036 | MS.gene074002:intron | 35.0% | |
| TGAAAAACATTCTAGTGTGG+AGG | + | chr2.1:29851743-29851762 | MS.gene074002:intron | 35.0% | |
| TGGCCAACGTAATCTTTATA+AGG | - | chr2.1:29854471-29854490 | None:intergenic | 35.0% | |
| TTCTTGCCATGCTGAATATT+TGG | + | chr2.1:29854797-29854816 | MS.gene074002:intron | 35.0% | |
| TTGCAGAATTTGTCAAAGCT+TGG | + | chr2.1:29855610-29855629 | MS.gene074002:CDS | 35.0% | |
| TTGGATATAGATTATGGGTC+AGG | + | chr2.1:29853565-29853584 | MS.gene074002:intron | 35.0% | |
| TTTATAGGTAATTGCAAGCC+TGG | - | chr2.1:29853261-29853280 | None:intergenic | 35.0% | |
| ! | AACTGACAGTTCAAGAGTAT+AGG | + | chr2.1:29855012-29855031 | MS.gene074002:intron | 35.0% |
| ! | AACTGTAGATGATGATGATG+AGG | + | chr2.1:29852302-29852321 | MS.gene074002:CDS | 35.0% |
| ! | ACTCATTGAGCTAACTTTTG+AGG | - | chr2.1:29854433-29854452 | None:intergenic | 35.0% |
| ! | AGCAATCACTAATTTTGCCA+TGG | - | chr2.1:29853535-29853554 | None:intergenic | 35.0% |
| ! | ATTAGTAGTAGTATTGGGAG+TGG | - | chr2.1:29854744-29854763 | None:intergenic | 35.0% |
| ! | CCCGACAAAATCGATTTATA+AGG | - | chr2.1:29854199-29854218 | None:intergenic | 35.0% |
| ! | CTCATTGAGCTAACTTTTGA+GGG | - | chr2.1:29854432-29854451 | None:intergenic | 35.0% |
| ! | GTCTTTCCCTTTTGAATCAT+CGG | + | chr2.1:29853472-29853491 | MS.gene074002:intron | 35.0% |
| ! | TCTAGGACGTACTATGATAA+AGG | + | chr2.1:29854323-29854342 | MS.gene074002:intron | 35.0% |
| ! | TGGGACAAAGTATCTGTATA+AGG | + | chr2.1:29853390-29853409 | MS.gene074002:intron | 35.0% |
| ! | TTAGTAGTAGTATTGGGAGT+GGG | - | chr2.1:29854743-29854762 | None:intergenic | 35.0% |
| ! | TTTTCGCAAAAGCTATGCTT+TGG | - | chr2.1:29855247-29855266 | None:intergenic | 35.0% |
| !! | CAACCCAAACTTCTAAGATT+GGG | + | chr2.1:29854270-29854289 | MS.gene074002:intron | 35.0% |
| !! | CCTTATAAGTCGATTTTGTC+GGG | + | chr2.1:29854157-29854176 | MS.gene074002:intron | 35.0% |
| !! | TCAACCCAAACTTCTAAGAT+TGG | + | chr2.1:29854269-29854288 | MS.gene074002:intron | 35.0% |
| !!! | AAGGCTATGCTAGTTTTTCT+AGG | + | chr2.1:29853018-29853037 | MS.gene074002:intron | 35.0% |
| !!! | TACCCAGTTTTTTACACAAG+AGG | - | chr2.1:29853893-29853912 | None:intergenic | 35.0% |
| AAAGGCAACACTGGTAAAAC+AGG | - | chr2.1:29854905-29854924 | None:intergenic | 40.0% | |
| ACCGCAAATCCAAACATATG+AGG | + | chr2.1:29855298-29855317 | MS.gene074002:intron | 40.0% | |
| AGGAAAAGAAGAGCAGAAAG+AGG | + | chr2.1:29852322-29852341 | MS.gene074002:CDS | 40.0% | |
| AGGACGTACTATGATAAAGG+AGG | + | chr2.1:29854326-29854345 | MS.gene074002:intron | 40.0% | |
| AGTATCCAGTTTGACATGGA+GGG | + | chr2.1:29852973-29852992 | MS.gene074002:intron | 40.0% | |
| ATTCTCCAAATGTCCAGTCT+TGG | + | chr2.1:29854047-29854066 | MS.gene074002:intron | 40.0% | |
| ATTCTTCTCTTCTTTCAGCC+AGG | - | chr2.1:29855547-29855566 | None:intergenic | 40.0% | |
| CAAAAGGGAAAGACAGGAAT+AGG | - | chr2.1:29853466-29853485 | None:intergenic | 40.0% | |
| CAAAGGAACATTGATACTGC+AGG | + | chr2.1:29852943-29852962 | MS.gene074002:intron | 40.0% | |
| CAGAATGGTCCTCATATGTT+TGG | - | chr2.1:29855310-29855329 | None:intergenic | 40.0% | |
| CAGATGAGAAGAAAAGCAAG+AGG | + | chr2.1:29852274-29852293 | MS.gene074002:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAAAC+TGG | + | chr2.1:29853887-29853906 | MS.gene074002:intron | 40.0% | |
| CCAAGCATACCTTATAACAG+CGG | - | chr2.1:29853632-29853651 | None:intergenic | 40.0% | |
| CGGTGAGTTTGATAGAATCA+AGG | - | chr2.1:29855282-29855301 | None:intergenic | 40.0% | |
| CTATGGTAGGAGACTTCAAT+AGG | - | chr2.1:29851874-29851893 | None:intergenic | 40.0% | |
| CTGATAAAAAAAAGGGCAGC+CGG | - | chr2.1:29853984-29854003 | None:intergenic | 40.0% | |
| CTGTTATGCTACTCATGATC+GGG | + | chr2.1:29854018-29854037 | MS.gene074002:intron | 40.0% | |
| GCTGCTTACAGTATACCAAA+TGG | + | chr2.1:29853915-29853934 | MS.gene074002:intron | 40.0% | |
| GCTGTGATTCCAAACATACA+CGG | - | chr2.1:29855181-29855200 | None:intergenic | 40.0% | |
| GCTTACAGTATACCAAATGG+TGG | + | chr2.1:29853918-29853937 | MS.gene074002:intron | 40.0% | |
| GGAAAAGAAGAGCAGAAAGA+GGG | + | chr2.1:29852323-29852342 | MS.gene074002:CDS | 40.0% | |
| GTCAGAAACTGTGATTGTTG+AGG | + | chr2.1:29855412-29855431 | MS.gene074002:intron | 40.0% | |
| GTTCCCCATTCAATGAGATA+TGG | + | chr2.1:29854099-29854118 | MS.gene074002:intron | 40.0% | |
| TAACCCTAAAAGCAAGCTCA+AGG | + | chr2.1:29853594-29853613 | MS.gene074002:intron | 40.0% | |
| TACAATCATGTATCAGCTGC+AGG | + | chr2.1:29852665-29852684 | MS.gene074002:intron | 40.0% | |
| TCTAGGAATCAAGAGGATAC+TGG | + | chr2.1:29853035-29853054 | MS.gene074002:intron | 40.0% | |
| TCTATGAGATGCTAGCTCAA+TGG | - | chr2.1:29855142-29855161 | None:intergenic | 40.0% | |
| TCTTACATTGACCAGTGATG+TGG | - | chr2.1:29854491-29854510 | None:intergenic | 40.0% | |
| TTGAAGACTCCGTGTATGTT+TGG | + | chr2.1:29855169-29855188 | MS.gene074002:intron | 40.0% | |
| TTGAAGTCTCCTACCATAGA+CGG | + | chr2.1:29851875-29851894 | MS.gene074002:intron | 40.0% | |
| TTGCCATGGAGTGAAATGAT+TGG | - | chr2.1:29853521-29853540 | None:intergenic | 40.0% | |
| TTGTATGTGTTGTAAGGGCA+TGG | + | chr2.1:29853848-29853867 | MS.gene074002:intron | 40.0% | |
| ! | AGAGGAAGAAAGTGTGTTGA+CGG | + | chr2.1:29851618-29851637 | MS.gene074002:CDS | 40.0% |
| ! | CCCGACAAAATCGACTTATA+AGG | - | chr2.1:29854160-29854179 | None:intergenic | 40.0% |
| ! | CGATTTTGTCGGGTTAAGTT+AGG | + | chr2.1:29854167-29854186 | MS.gene074002:intron | 40.0% |
| ! | TGTATGTGTTGTAAGGGCAT+GGG | + | chr2.1:29853849-29853868 | MS.gene074002:intron | 40.0% |
| !! | ACTCCTTGAGCTTGCTTTTA+GGG | - | chr2.1:29853600-29853619 | None:intergenic | 40.0% |
| !! | AGAATAACGAGTTTGCTACC+TGG | + | chr2.1:29855526-29855545 | MS.gene074002:CDS | 40.0% |
| !! | CGGTTTTGTAGGATTGAGTT+AGG | + | chr2.1:29853755-29853774 | MS.gene074002:intron | 40.0% |
| !!! | TCTCTTCTGGAGTGTTGTTT+TGG | + | chr2.1:29851700-29851719 | MS.gene074002:intron | 40.0% |
| !!! | TGGAGTGTTGTTTTGGTTGA+GGG | + | chr2.1:29851707-29851726 | MS.gene074002:intron | 40.0% |
| ACAACTTTACCATTGCGCCA+AGG | - | chr2.1:29853832-29853851 | None:intergenic | 45.0% | |
| AGCTGCACTGAAGGTAATCT+AGG | + | chr2.1:29854306-29854325 | MS.gene074002:intron | 45.0% | |
| AGGAGGTTACGATTCCGATA+TGG | + | chr2.1:29854343-29854362 | MS.gene074002:intron | 45.0% | |
| AGGAGTGAGTTAGAAGTCGT+TGG | + | chr2.1:29852685-29852704 | MS.gene074002:intron | 45.0% | |
| AGGTGTGGAGAGTCTCATAT+TGG | + | chr2.1:29853675-29853694 | MS.gene074002:intron | 45.0% | |
| AGTTTGACATGGAGGGTCTT+AGG | + | chr2.1:29852980-29852999 | MS.gene074002:intron | 45.0% | |
| ATTCAGCAGAAAGGCAACAC+TGG | - | chr2.1:29854914-29854933 | None:intergenic | 45.0% | |
| CAGTATCCAGTTTGACATGG+AGG | + | chr2.1:29852972-29852991 | MS.gene074002:intron | 45.0% | |
| CAGTGAAATGGCACAAGACA+AGG | - | chr2.1:29853427-29853446 | None:intergenic | 45.0% | |
| CCGCTGTTATAAGGTATGCT+TGG | + | chr2.1:29853629-29853648 | MS.gene074002:intron | 45.0% | |
| GAAATGGCACAAGACAAGGA+TGG | - | chr2.1:29853423-29853442 | None:intergenic | 45.0% | |
| GCAACACTGGTAAAACAGGA+TGG | - | chr2.1:29854901-29854920 | None:intergenic | 45.0% | |
| GGTACCAATGTTTGCAGTCT+GGG | - | chr2.1:29854380-29854399 | None:intergenic | 45.0% | |
| TAAGACCCTCCATGTCAAAC+TGG | - | chr2.1:29852981-29853000 | None:intergenic | 45.0% | |
| TCTTCGCAATCCGAATCTCA+AGG | + | chr2.1:29852007-29852026 | MS.gene074002:CDS | 45.0% | |
| TGGTACCAATGTTTGCAGTC+TGG | - | chr2.1:29854381-29854400 | None:intergenic | 45.0% | |
| TTCAATAGGTCTCCCACTGT+AGG | - | chr2.1:29851860-29851879 | None:intergenic | 45.0% | |
| TTGAGCGACAAATCTAGGTG+TGG | + | chr2.1:29853660-29853679 | MS.gene074002:intron | 45.0% | |
| ! | ACTACTGACACAAGCCCTTT+TGG | - | chr2.1:29852586-29852605 | None:intergenic | 45.0% |
| ! | AGACTAACTGCAGGGGTTTT+GGG | + | chr2.1:29853064-29853083 | MS.gene074002:intron | 45.0% |
| ! | GAAGAAAGTGTGTTGACGGA+CGG | + | chr2.1:29851622-29851641 | MS.gene074002:CDS | 45.0% |
| ! | GAATCAAGAGGATACTGGCT+AGG | + | chr2.1:29853040-29853059 | MS.gene074002:intron | 45.0% |
| ! | TAGACTAACTGCAGGGGTTT+TGG | + | chr2.1:29853063-29853082 | MS.gene074002:intron | 45.0% |
| ! | TCTAAGATAAGGGAGAGCCT+TGG | + | chr2.1:29853812-29853831 | MS.gene074002:intron | 45.0% |
| !! | CACTCCTTGAGCTTGCTTTT+AGG | - | chr2.1:29853601-29853620 | None:intergenic | 45.0% |
| !!! | ACTGCTTGAGGTTTTGAGCA+AGG | + | chr2.1:29853295-29853314 | MS.gene074002:intron | 45.0% |
| !!! | CTGGAGTGTTGTTTTGGTTG+AGG | + | chr2.1:29851706-29851725 | MS.gene074002:intron | 45.0% |
| AATGTCCAGTCTTGGACGTG+AGG | + | chr2.1:29854055-29854074 | MS.gene074002:intron | 50.0% | |
| ACAAAGCTCCCACATACGCA+GGG | - | chr2.1:29853958-29853977 | None:intergenic | 50.0% | |
| ACAGAGTTCGAATCCCCTCA+AGG | - | chr2.1:29855119-29855138 | None:intergenic | 50.0% | |
| ATGTCCAGTCTTGGACGTGA+GGG | + | chr2.1:29854056-29854075 | MS.gene074002:intron | 50.0% | |
| CACGTCCAAGACTGGACATT+TGG | - | chr2.1:29854055-29854074 | None:intergenic | 50.0% | |
| GAACTGTCAGTTGCAGCATG+TGG | - | chr2.1:29855004-29855023 | None:intergenic | 50.0% | |
| GATTACGTTGGCCACATCAC+TGG | + | chr2.1:29854477-29854496 | MS.gene074002:intron | 50.0% | |
| GCTAGGTAGACTAACTGCAG+GGG | + | chr2.1:29853057-29853076 | MS.gene074002:intron | 50.0% | |
| GCTTCTAGTAGCTGCACTGA+AGG | + | chr2.1:29854297-29854316 | MS.gene074002:intron | 50.0% | |
| GGCTAGGTAGACTAACTGCA+GGG | + | chr2.1:29853056-29853075 | MS.gene074002:intron | 50.0% | |
| GGGAGACTCTGCTTCCATAT+CGG | - | chr2.1:29854360-29854379 | None:intergenic | 50.0% | |
| GTCTCCCAGACTGCAAACAT+TGG | + | chr2.1:29854373-29854392 | MS.gene074002:intron | 50.0% | |
| TGGCTAGGTAGACTAACTGC+AGG | + | chr2.1:29853055-29853074 | MS.gene074002:intron | 50.0% | |
| ! | GGTGTGATGGAGGATGTTTC+CGG | + | chr2.1:29851643-29851662 | MS.gene074002:CDS | 50.0% |
| ! | TATGTGGGAGCTTTGTGCAC+CGG | + | chr2.1:29853962-29853981 | MS.gene074002:intron | 50.0% |
| ! | TTCCATTTATGGGCTGTGCG+AGG | - | chr2.1:29855684-29855703 | None:intergenic | 50.0% |
| !! | ACAAAATCACGGTGTCACCG+TGG | + | chr2.1:29855208-29855227 | MS.gene074002:intron | 50.0% |
| ATGGAGGATGTTTCCGGCGA+CGG | + | chr2.1:29851588-29851607 | MS.gene074002:CDS | 55.0% | |
| CACAAAGCTCCCACATACGC+AGG | - | chr2.1:29853959-29853978 | None:intergenic | 55.0% | |
| TCCTCTTTCTGTTCCGTCGC+CGG | - | chr2.1:29851604-29851623 | None:intergenic | 55.0% | |
| TTGCCAGACCCTGCGTATGT+GGG | + | chr2.1:29853947-29853966 | MS.gene074002:intron | 55.0% | |
| ! | TGTGTTGACGGACGGTGTGA+TGG | + | chr2.1:29851630-29851649 | MS.gene074002:CDS | 55.0% |
| !! | TCAAACAAGGGCGCCGTCTA+TGG | - | chr2.1:29851891-29851910 | None:intergenic | 55.0% |
| AAGGGAGAGCCTTGGCGCAA+TGG | + | chr2.1:29853820-29853839 | MS.gene074002:intron | 60.0% | |
| ACCACCCTCACGTCCAAGAC+TGG | - | chr2.1:29854063-29854082 | None:intergenic | 60.0% | |
| CATACGCAGGGTCTGGCAAG+CGG | - | chr2.1:29853946-29853965 | None:intergenic | 60.0% | |
| CGCCTCGCACAGCCCATAAA+TGG | + | chr2.1:29855679-29855698 | MS.gene074002:CDS | 60.0% | |
| CTTGCCAGACCCTGCGTATG+TGG | + | chr2.1:29853946-29853965 | MS.gene074002:intron | 60.0% | |
| TCCAGTCTTGGACGTGAGGG+TGG | + | chr2.1:29854059-29854078 | MS.gene074002:intron | 60.0% | |
| TCCGGCGACGGAACAGAAAG+AGG | + | chr2.1:29851600-29851619 | MS.gene074002:CDS | 60.0% | |
| TGGCAAGCGGTCCCACCATT+TGG | - | chr2.1:29853933-29853952 | None:intergenic | 60.0% | |
| ! | GTTGACGGACGGTGTGATGG+AGG | + | chr2.1:29851633-29851652 | MS.gene074002:CDS | 60.0% |
| !! | ACAAGGGCGCCGTCTATGGT+AGG | - | chr2.1:29851887-29851906 | None:intergenic | 60.0% |
| GCTCCCACATACGCAGGGTC+TGG | - | chr2.1:29853953-29853972 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 29851588 | 29855716 | 29851588 | ID=MS.gene074002 |
| chr2.1 | mRNA | 29851588 | 29855716 | 29851588 | ID=MS.gene074002.t1;Parent=MS.gene074002 |
| chr2.1 | exon | 29851588 | 29851689 | 29851588 | ID=MS.gene074002.t1.exon1;Parent=MS.gene074002.t1 |
| chr2.1 | CDS | 29851588 | 29851689 | 29851588 | ID=cds.MS.gene074002.t1;Parent=MS.gene074002.t1 |
| chr2.1 | exon | 29851935 | 29852028 | 29851935 | ID=MS.gene074002.t1.exon2;Parent=MS.gene074002.t1 |
| chr2.1 | CDS | 29851935 | 29852028 | 29851935 | ID=cds.MS.gene074002.t1;Parent=MS.gene074002.t1 |
| chr2.1 | exon | 29852277 | 29852399 | 29852277 | ID=MS.gene074002.t1.exon3;Parent=MS.gene074002.t1 |
| chr2.1 | CDS | 29852277 | 29852399 | 29852277 | ID=cds.MS.gene074002.t1;Parent=MS.gene074002.t1 |
| chr2.1 | exon | 29854672 | 29854727 | 29854672 | ID=MS.gene074002.t1.exon4;Parent=MS.gene074002.t1 |
| chr2.1 | CDS | 29854672 | 29854727 | 29854672 | ID=cds.MS.gene074002.t1;Parent=MS.gene074002.t1 |
| chr2.1 | exon | 29855489 | 29855716 | 29855489 | ID=MS.gene074002.t1.exon5;Parent=MS.gene074002.t1 |
| chr2.1 | CDS | 29855489 | 29855716 | 29855489 | ID=cds.MS.gene074002.t1;Parent=MS.gene074002.t1 |
| Gene Sequence |
| Protein sequence |
