Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08200.t1 | XP_003624631.1 | 94.6 | 258 | 8 | 3 | 1 | 258 | 1 | 252 | 4.20E-132 | 480.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08200.t1 | A2Q5V9 | 94.6 | 258 | 8 | 3 | 1 | 258 | 1 | 252 | 3.0e-132 | 480.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050105 | MS.gene08200 | 0.847637 | 1.02E-59 | -1.69E-46 |
| MS.gene050508 | MS.gene08200 | 0.853615 | 2.13E-61 | -1.69E-46 |
| MS.gene050605 | MS.gene08200 | 0.825786 | 3.88E-54 | -1.69E-46 |
| MS.gene050680 | MS.gene08200 | 0.836273 | 1.03E-56 | -1.69E-46 |
| MS.gene051122 | MS.gene08200 | 0.816816 | 4.55E-52 | -1.69E-46 |
| MS.gene051368 | MS.gene08200 | 0.847841 | 8.96E-60 | -1.69E-46 |
| MS.gene051370 | MS.gene08200 | 0.808477 | 3.04E-50 | -1.69E-46 |
| MS.gene051926 | MS.gene08200 | -0.807263 | 5.51E-50 | -1.69E-46 |
| MS.gene052190 | MS.gene08200 | 0.805792 | 1.13E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene08200 | 0.854561 | 1.13E-61 | -1.69E-46 |
| MS.gene053166 | MS.gene08200 | 0.809759 | 1.61E-50 | -1.69E-46 |
| MS.gene055225 | MS.gene08200 | 0.849341 | 3.44E-60 | -1.69E-46 |
| MS.gene055701 | MS.gene08200 | 0.851587 | 8.05E-61 | -1.69E-46 |
| MS.gene056506 | MS.gene08200 | 0.814889 | 1.22E-51 | -1.69E-46 |
| MS.gene057156 | MS.gene08200 | -0.820283 | 7.44E-53 | -1.69E-46 |
| MS.gene059710 | MS.gene08200 | 0.85468 | 1.05E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08200.t1 | MTR_7g085790 | 94.574 | 258 | 8 | 3 | 1 | 258 | 1 | 252 | 1.77e-180 | 496 |
| MS.gene08200.t1 | MTR_7g085790 | 79.845 | 258 | 7 | 3 | 1 | 258 | 1 | 213 | 1.26e-144 | 404 |
| MS.gene08200.t1 | MTR_6g029250 | 49.219 | 256 | 99 | 9 | 1 | 256 | 1 | 225 | 3.78e-61 | 192 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08200.t1 | AT5G18130 | 32.423 | 293 | 150 | 9 | 1 | 258 | 1 | 280 | 1.68e-36 | 130 |
| MS.gene08200.t1 | AT3G03870 | 34.173 | 278 | 151 | 14 | 1 | 258 | 1 | 266 | 1.52e-32 | 120 |
| MS.gene08200.t1 | AT5G18130 | 29.344 | 259 | 136 | 8 | 1 | 225 | 1 | 246 | 5.76e-20 | 86.7 |
| MS.gene08200.t1 | AT3G03870 | 30.705 | 241 | 136 | 13 | 1 | 222 | 1 | 229 | 4.22e-16 | 75.5 |
Find 48 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTTGTTGACATGAAAT+TGG | 0.182807 | 7.3:+22912996 | MS.gene08200:CDS |
| CCTCTACCACTACTAGATTT+TGG | 0.209211 | 7.3:-22913024 | None:intergenic |
| TTCTCCATGTTCTTCATTCT+AGG | 0.255315 | 7.3:-22913090 | None:intergenic |
| GTTGGAGCTATATGTTCTTT+TGG | 0.285385 | 7.3:+22913201 | MS.gene08200:CDS |
| ACAATTTGTGTCTTGTTCTT+TGG | 0.297991 | 7.3:+22913237 | MS.gene08200:CDS |
| GGAACATGGAAAATTTGTTT+TGG | 0.322740 | 7.3:-22912835 | None:intergenic |
| GAACATGGAGAATGAAAATA+AGG | 0.328452 | 7.3:+22913101 | MS.gene08200:CDS |
| TCTTTCACCAGCCCTTCATT+TGG | 0.338022 | 7.3:-22912889 | None:intergenic |
| ATGATGGGTTCAAATTGAAT+TGG | 0.356134 | 7.3:-22912856 | None:intergenic |
| TAATACTACTTTGGTCTTGT+TGG | 0.368197 | 7.3:-22913284 | None:intergenic |
| AACAAGACCAAAGTAGTATT+AGG | 0.368502 | 7.3:+22913286 | MS.gene08200:CDS |
| AGCAGATCTCACATAACTTA+TGG | 0.371654 | 7.3:+22914785 | MS.gene08200:CDS |
| ATTTGGAACCTTGTCAATGA+TGG | 0.382204 | 7.3:-22912872 | None:intergenic |
| TGGGTGATCCTTTCTGATGA+TGG | 0.393897 | 7.3:+22912688 | MS.gene08200:CDS |
| TTGATCAGCTTCCTCTATCT+CGG | 0.423812 | 7.3:-22912935 | None:intergenic |
| TCTTGAACCTAATACTACTT+TGG | 0.449158 | 7.3:-22913293 | None:intergenic |
| TGATCAGCTTCCTCTATCTC+GGG | 0.452128 | 7.3:-22912934 | None:intergenic |
| AATTCAAGTCCCCGAGATAG+AGG | 0.452399 | 7.3:+22912924 | MS.gene08200:CDS |
| TTGTGGAAGTGGAGCTTGAC+AGG | 0.453604 | 7.3:+22913177 | MS.gene08200:CDS |
| GAAGCATTTGCAGCAGTAAG+AGG | 0.455785 | 7.3:+22914752 | MS.gene08200:CDS |
| ATTGACAAGGTTCCAAATGA+AGG | 0.461067 | 7.3:+22912877 | MS.gene08200:CDS |
| TTTGGAACCTTGTCAATGAT+GGG | 0.478486 | 7.3:-22912871 | None:intergenic |
| CCAAAATCTAGTAGTGGTAG+AGG | 0.509925 | 7.3:+22913024 | MS.gene08200:CDS |
| CAAGGTTCCAAATGAAGGGC+TGG | 0.510901 | 7.3:+22912882 | MS.gene08200:CDS |
| AAGGAAGGAGAGGACATGAA+TGG | 0.517989 | 7.3:+22913144 | MS.gene08200:CDS |
| GGCTACTATGATAGTGTTTG+AGG | 0.524289 | 7.3:+22914809 | MS.gene08200:CDS |
| AAGTGGAGCTTGACAGGAGT+TGG | 0.528199 | 7.3:+22913183 | MS.gene08200:CDS |
| ATCTCCATGTCTGCATCAAG+TGG | 0.532042 | 7.3:-22913057 | None:intergenic |
| GTTATGTGAGATCTGCTCAA+TGG | 0.533356 | 7.3:-22914779 | None:intergenic |
| TTCTCCACTTGATGCAGACA+TGG | 0.549790 | 7.3:+22913053 | MS.gene08200:CDS |
| ATGTACTATGATGAGAAGGA+AGG | 0.568648 | 7.3:+22913129 | MS.gene08200:CDS |
| TTGACAAGGTTCCAAATGAA+GGG | 0.592489 | 7.3:+22912878 | MS.gene08200:CDS |
| GTTCAAATTGAATTGGAACA+TGG | 0.592625 | 7.3:-22912849 | None:intergenic |
| AAACTCACTCGTCTTTGACA+AGG | 0.596384 | 7.3:+22912753 | MS.gene08200:CDS |
| TGTTCTTTGGAAGTCAACAA+AGG | 0.599769 | 7.3:+22913250 | MS.gene08200:CDS |
| TGTTATGTACTATGATGAGA+AGG | 0.601438 | 7.3:+22913125 | MS.gene08200:CDS |
| GAAGGAGAGGACATGAATGG+TGG | 0.601946 | 7.3:+22913147 | MS.gene08200:CDS |
| CAAGATCTACACTGATGACA+AGG | 0.613940 | 7.3:+22913311 | MS.gene08200:CDS |
| ATTTGAACCCATCATTGACA+AGG | 0.620426 | 7.3:+22912864 | MS.gene08200:CDS |
| AAAGAACAAGACACAAATTG+TGG | 0.626637 | 7.3:-22913235 | None:intergenic |
| GATCAGCTTCCTCTATCTCG+GGG | 0.628424 | 7.3:-22912933 | None:intergenic |
| CTATGATGAGAAGGAAGGAG+AGG | 0.636243 | 7.3:+22913134 | MS.gene08200:CDS |
| ATTGCAGAGGGTTAAGCAAG+TGG | 0.641403 | 7.3:+22914706 | MS.gene08200:intron |
| ATCTCCTAGAATGAAGAACA+TGG | 0.641567 | 7.3:+22913086 | MS.gene08200:CDS |
| GAGTCACCAAAATCTAGTAG+TGG | 0.643722 | 7.3:+22913018 | MS.gene08200:CDS |
| AGATCTCACATAACTTATGG+TGG | 0.644653 | 7.3:+22914788 | MS.gene08200:CDS |
| GAAGATGGATATCAATGAGT+GGG | 0.674672 | 7.3:+22912669 | None:intergenic |
| TGAAGATGGATATCAATGAG+TGG | 0.698977 | 7.3:+22912668 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAGAATATATTGTATT+GGG | - | chr7.3:22914376-22914395 | None:intergenic | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr7.3:22913572-22913591 | MS.gene08200:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr7.3:22913591-22913572 | None:intergenic | 10.0% |
| !! | ATATTAATTAGAGTTATAAA+AGG | + | chr7.3:22913632-22913651 | MS.gene08200:intron | 10.0% |
| !! | CAATTATAAATAATTTATGA+GGG | + | chr7.3:22913993-22914012 | MS.gene08200:intron | 10.0% |
| !! | CTTGTTAATAATTTATAATT+AGG | - | chr7.3:22914068-22914087 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr7.3:22913571-22913590 | MS.gene08200:intron | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr7.3:22913590-22913571 | None:intergenic | 10.0% |
| !! | TATTAATTAGAGTTATAAAA+GGG | + | chr7.3:22913633-22913652 | MS.gene08200:intron | 10.0% |
| !! | TCAATTATAAATAATTTATG+AGG | + | chr7.3:22913992-22914011 | MS.gene08200:intron | 10.0% |
| !!! | TAAGAAAATATTCATTTTTT+AGG | + | chr7.3:22914229-22914248 | MS.gene08200:intron | 10.0% |
| !!! | TTTAGAAATTTAAAAAGTAT+AGG | + | chr7.3:22914498-22914517 | MS.gene08200:intron | 10.0% |
| !! | AAAATTGTGTCAATTAAATT+GGG | + | chr7.3:22914436-22914455 | MS.gene08200:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr7.3:22913573-22913592 | MS.gene08200:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr7.3:22913592-22913573 | None:intergenic | 15.0% |
| !! | GAAAATAGAATATATTGTAT+TGG | - | chr7.3:22914377-22914396 | None:intergenic | 15.0% |
| !! | TTATTCAATGAATCTAAAAA+AGG | + | chr7.3:22914303-22914322 | MS.gene08200:intron | 15.0% |
| !!! | AACACTTTTTTTTTAGTAAA+TGG | + | chr7.3:22913727-22913746 | MS.gene08200:intron | 15.0% |
| !!! | ATATATGAGACTTTTAAAAT+AGG | + | chr7.3:22913829-22913848 | MS.gene08200:intron | 15.0% |
| !!! | TTAAAAACTTTTTAGTTTAG+AGG | + | chr7.3:22914042-22914061 | MS.gene08200:intron | 15.0% |
| !! | AAAAGTGGAATATATTGAAT+TGG | + | chr7.3:22913657-22913676 | MS.gene08200:intron | 20.0% |
| !! | AAAGTGGAATATATTGAATT+GGG | + | chr7.3:22913596-22913615 | MS.gene08200:intron | 20.0% |
| !! | AATAATGTCATAGAAAAAAG+GGG | + | chr7.3:22914558-22914577 | MS.gene08200:intron | 20.0% |
| !! | ACAATAATGTCATAGAAAAA+AGG | + | chr7.3:22914556-22914575 | MS.gene08200:intron | 20.0% |
| !! | ACACTAGTATTAATTGAATA+TGG | - | chr7.3:22913493-22913512 | None:intergenic | 20.0% |
| !! | CAAAATTGTGTCAATTAAAT+TGG | + | chr7.3:22914435-22914454 | MS.gene08200:intron | 20.0% |
| !! | CAATAATGTCATAGAAAAAA+GGG | + | chr7.3:22914557-22914576 | MS.gene08200:intron | 20.0% |
| !! | TATTGAAAATTGAAATGACT+CGG | + | chr7.3:22913695-22913714 | MS.gene08200:intron | 20.0% |
| !! | TTACAAATATTTAAATGTCC+AGG | - | chr7.3:22913950-22913969 | None:intergenic | 20.0% |
| !! | TTATTCTTGAATAGTCAAAA+TGG | + | chr7.3:22914617-22914636 | MS.gene08200:intron | 20.0% |
| !!! | GAAATTTAAAAAGTATAGGA+TGG | + | chr7.3:22914502-22914521 | MS.gene08200:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr7.3:22914117-22914136 | None:intergenic | 20.0% |
| !!! | TATTTTCTTATATTTGAGAC+CGG | - | chr7.3:22914219-22914238 | None:intergenic | 20.0% |
| !!! | TTTTAATGGTTCAATATCAA+TGG | - | chr7.3:22912812-22912831 | None:intergenic | 20.0% |
| ! | AAAATATTGTTTGAGCATCT+TGG | + | chr7.3:22913803-22913822 | MS.gene08200:intron | 25.0% |
| ! | ATAATGTCATAGAAAAAAGG+GGG | + | chr7.3:22914559-22914578 | MS.gene08200:intron | 25.0% |
| ! | GAAAGTGGAATATATTGAAT+TGG | + | chr7.3:22913595-22913614 | MS.gene08200:intron | 25.0% |
| ! | TAAGAGTTGACATAAAGATT+TGG | - | chr7.3:22913418-22913437 | None:intergenic | 25.0% |
| !! | CTCTTACTATGTTTTATCTA+TGG | + | chr7.3:22913432-22913451 | MS.gene08200:intron | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | - | chr7.3:22914140-22914159 | None:intergenic | 25.0% |
| !! | TTGAATAGTCAAAATGGATT+AGG | + | chr7.3:22914623-22914642 | MS.gene08200:intron | 25.0% |
| !!! | AATGGTTTTTGTTGATTTTG+GGG | - | chr7.3:22912794-22912813 | None:intergenic | 25.0% |
| !!! | ATTTGTTTTGGCACTTTTAA+TGG | - | chr7.3:22912826-22912845 | None:intergenic | 25.0% |
| !!! | CAAATTTGTTGACATGAAAT+TGG | + | chr7.3:22912996-22913015 | MS.gene08200:CDS | 25.0% |
| !!! | CAATGGTTTTTGTTGATTTT+GGG | - | chr7.3:22912795-22912814 | None:intergenic | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr7.3:22914118-22914137 | None:intergenic | 25.0% |
| !!! | TCAATGGTTTTTGTTGATTT+TGG | - | chr7.3:22912796-22912815 | None:intergenic | 25.0% |
| !!! | TCTTTTCTTATATTTGAGAC+CGG | + | chr7.3:22914328-22914347 | MS.gene08200:intron | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | - | chr7.3:22914139-22914158 | None:intergenic | 25.0% |
| AAAGAACAAGACACAAATTG+TGG | - | chr7.3:22913238-22913257 | None:intergenic | 30.0% | |
| AACAAGACCAAAGTAGTATT+AGG | + | chr7.3:22913286-22913305 | MS.gene08200:CDS | 30.0% | |
| AATAAGTGTGAAATGAGTCA+AGG | - | chr7.3:22913552-22913571 | None:intergenic | 30.0% | |
| ATAAGTGTGAAATGAGTCAA+GGG | - | chr7.3:22913551-22913570 | None:intergenic | 30.0% | |
| ATTATTGTCCATCAAATGAC+AGG | - | chr7.3:22914544-22914563 | None:intergenic | 30.0% | |
| ATTCAAAGCTGTTTACTTCA+GGG | - | chr7.3:22913922-22913941 | None:intergenic | 30.0% | |
| GAACATGGAGAATGAAAATA+AGG | + | chr7.3:22913101-22913120 | MS.gene08200:CDS | 30.0% | |
| GAGTTATAAAAGGGAAAAAG+TGG | + | chr7.3:22913642-22913661 | MS.gene08200:intron | 30.0% | |
| GTTCAAATTGAATTGGAACA+TGG | - | chr7.3:22912852-22912871 | None:intergenic | 30.0% | |
| TCTATGGATAAGACTTGAAT+CGG | + | chr7.3:22913448-22913467 | MS.gene08200:intron | 30.0% | |
| TCTTGAACCTAATACTACTT+TGG | - | chr7.3:22913296-22913315 | None:intergenic | 30.0% | |
| TGCAATCACAATCACAATTA+AGG | - | chr7.3:22914692-22914711 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr7.3:22913580-22913599 | MS.gene08200:intron | 30.0% | |
| TGTTATGTACTATGATGAGA+AGG | + | chr7.3:22913125-22913144 | MS.gene08200:CDS | 30.0% | |
| TTGTGTCAATTAAATTGGGA+CGG | + | chr7.3:22914440-22914459 | MS.gene08200:intron | 30.0% | |
| ! | ACAATTTGTGTCTTGTTCTT+TGG | + | chr7.3:22913237-22913256 | MS.gene08200:CDS | 30.0% |
| ! | TAAAAAGTATAGGATGGTGA+TGG | + | chr7.3:22914508-22914527 | MS.gene08200:intron | 30.0% |
| !! | ATGATGGGTTCAAATTGAAT+TGG | - | chr7.3:22912859-22912878 | None:intergenic | 30.0% |
| !! | GGAACATGGAAAATTTGTTT+TGG | - | chr7.3:22912838-22912857 | None:intergenic | 30.0% |
| !! | TAATACTACTTTGGTCTTGT+TGG | - | chr7.3:22913287-22913306 | None:intergenic | 30.0% |
| !!! | TTGAAATGACTCGGTTATTT+TGG | + | chr7.3:22913704-22913723 | MS.gene08200:intron | 30.0% |
| AACTAATCTTTGCGCAGAAT+CGG | + | chr7.3:22913387-22913406 | MS.gene08200:intron | 35.0% | |
| AATTGTGATTGTGATTGCAG+AGG | + | chr7.3:22914693-22914712 | MS.gene08200:intron | 35.0% | |
| ACACTAAATAATACTCCCTC+CGG | + | chr7.3:22914197-22914216 | MS.gene08200:intron | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr7.3:22914104-22914123 | None:intergenic | 35.0% | |
| AGATCTCACATAACTTATGG+TGG | + | chr7.3:22914788-22914807 | MS.gene08200:CDS | 35.0% | |
| AGCAGATCTCACATAACTTA+TGG | + | chr7.3:22914785-22914804 | MS.gene08200:CDS | 35.0% | |
| AGTAAATGGCTCAGTTAATC+CGG | + | chr7.3:22913741-22913760 | MS.gene08200:intron | 35.0% | |
| ATCTCCTAGAATGAAGAACA+TGG | + | chr7.3:22913086-22913105 | MS.gene08200:CDS | 35.0% | |
| ATGTACTATGATGAGAAGGA+AGG | + | chr7.3:22913129-22913148 | MS.gene08200:CDS | 35.0% | |
| ATTGACAAGGTTCCAAATGA+AGG | + | chr7.3:22912877-22912896 | MS.gene08200:CDS | 35.0% | |
| ATTGTGATTGTGATTGCAGA+GGG | + | chr7.3:22914694-22914713 | MS.gene08200:intron | 35.0% | |
| ATTTGAACCCATCATTGACA+AGG | + | chr7.3:22912864-22912883 | MS.gene08200:CDS | 35.0% | |
| CAAAAAAGCCATCATCAGAA+AGG | - | chr7.3:22912699-22912718 | None:intergenic | 35.0% | |
| GATTCAAAGCTGTTTACTTC+AGG | - | chr7.3:22913923-22913942 | None:intergenic | 35.0% | |
| TTCTCCATGTTCTTCATTCT+AGG | - | chr7.3:22913093-22913112 | None:intergenic | 35.0% | |
| TTGACAAGGTTCCAAATGAA+GGG | + | chr7.3:22912878-22912897 | MS.gene08200:CDS | 35.0% | |
| ! | AAAAAAGGGGGTGATTGTTT+TGG | + | chr7.3:22914571-22914590 | MS.gene08200:intron | 35.0% |
| ! | ATTTGGAACCTTGTCAATGA+TGG | - | chr7.3:22912875-22912894 | None:intergenic | 35.0% |
| ! | GAGAAATTCCTGTCATTTGA+TGG | + | chr7.3:22914533-22914552 | MS.gene08200:intron | 35.0% |
| ! | GTTGGAGCTATATGTTCTTT+TGG | + | chr7.3:22913201-22913220 | MS.gene08200:CDS | 35.0% |
| ! | TGTTCTTTGGAAGTCAACAA+AGG | + | chr7.3:22913250-22913269 | MS.gene08200:CDS | 35.0% |
| ! | TTCTTATATTTGAGACCGGA+GGG | + | chr7.3:22914332-22914351 | MS.gene08200:intron | 35.0% |
| ! | TTCTTATATTTGAGACCGGA+GGG | - | chr7.3:22914351-22914332 | None:intergenic | 35.0% |
| ! | TTTCTTATATTTGAGACCGG+AGG | + | chr7.3:22914331-22914350 | MS.gene08200:intron | 35.0% |
| ! | TTTCTTATATTTGAGACCGG+AGG | - | chr7.3:22914350-22914331 | None:intergenic | 35.0% |
| ! | TTTGGAACCTTGTCAATGAT+GGG | - | chr7.3:22912874-22912893 | None:intergenic | 35.0% |
| !!! | TCTGATGATGGCTTTTTTGA+TGG | + | chr7.3:22912700-22912719 | MS.gene08200:CDS | 35.0% |
| !!! | TGAATGGTGGTTTTAACTTG+TGG | + | chr7.3:22913160-22913179 | MS.gene08200:CDS | 35.0% |
| AAACTCACTCGTCTTTGACA+AGG | + | chr7.3:22912753-22912772 | MS.gene08200:CDS | 40.0% | |
| AGGGCTCAATTAATTCAGGA+CGG | - | chr7.3:22913532-22913551 | None:intergenic | 40.0% | |
| CAAGATCTACACTGATGACA+AGG | + | chr7.3:22913311-22913330 | MS.gene08200:CDS | 40.0% | |
| CCAAAATCTAGTAGTGGTAG+AGG | + | chr7.3:22913024-22913043 | MS.gene08200:CDS | 40.0% | |
| CTCAATTAATTCAGGACGGA+GGG | - | chr7.3:22913528-22913547 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr7.3:22914103-22914122 | None:intergenic | 40.0% | |
| GAGTCACCAAAATCTAGTAG+TGG | + | chr7.3:22913018-22913037 | MS.gene08200:CDS | 40.0% | |
| GATAAAAGTAGTACTCCCTC+CGG | - | chr7.3:22914350-22914369 | None:intergenic | 40.0% | |
| GTAAATGGCTCAGTTAATCC+GGG | + | chr7.3:22913742-22913761 | MS.gene08200:intron | 40.0% | |
| GTCAAGGGCTCAATTAATTC+AGG | - | chr7.3:22913536-22913555 | None:intergenic | 40.0% | |
| GTTATGTGAGATCTGCTCAA+TGG | - | chr7.3:22914782-22914801 | None:intergenic | 40.0% | |
| TGTCAATTAAATTGGGACGG+AGG | + | chr7.3:22914443-22914462 | MS.gene08200:intron | 40.0% | |
| TTGATCAGCTTCCTCTATCT+CGG | - | chr7.3:22912938-22912957 | None:intergenic | 40.0% | |
| ! | CCTCTACCACTACTAGATTT+TGG | - | chr7.3:22913027-22913046 | None:intergenic | 40.0% |
| !! | AACAGCTTTGAATCAGATCC+TGG | + | chr7.3:22913929-22913948 | MS.gene08200:intron | 40.0% |
| !!! | GGTTTTTGTTGATTTTGGGG+AGG | - | chr7.3:22912791-22912810 | None:intergenic | 40.0% |
| !!! | GTGGTTTTAACTTGTGGAAG+TGG | + | chr7.3:22913166-22913185 | MS.gene08200:CDS | 40.0% |
| AAGGAAGGAGAGGACATGAA+TGG | + | chr7.3:22913144-22913163 | MS.gene08200:CDS | 45.0% | |
| AATTCAAGTCCCCGAGATAG+AGG | + | chr7.3:22912924-22912943 | MS.gene08200:CDS | 45.0% | |
| ATCTCCATGTCTGCATCAAG+TGG | - | chr7.3:22913060-22913079 | None:intergenic | 45.0% | |
| ATTGCAGAGGGTTAAGCAAG+TGG | + | chr7.3:22914706-22914725 | MS.gene08200:intron | 45.0% | |
| CTATGATGAGAAGGAAGGAG+AGG | + | chr7.3:22913134-22913153 | MS.gene08200:CDS | 45.0% | |
| GCTCAATTAATTCAGGACGG+AGG | - | chr7.3:22913529-22913548 | None:intergenic | 45.0% | |
| TCTTTCACCAGCCCTTCATT+TGG | - | chr7.3:22912892-22912911 | None:intergenic | 45.0% | |
| TGATCAGCTTCCTCTATCTC+GGG | - | chr7.3:22912937-22912956 | None:intergenic | 45.0% | |
| TGGGTGATCCTTTCTGATGA+TGG | + | chr7.3:22912688-22912707 | MS.gene08200:CDS | 45.0% | |
| TTCTCCACTTGATGCAGACA+TGG | + | chr7.3:22913053-22913072 | MS.gene08200:CDS | 45.0% | |
| ! | GAAGCATTTGCAGCAGTAAG+AGG | + | chr7.3:22914752-22914771 | MS.gene08200:CDS | 45.0% |
| AAATACTACTCCCTCCGTCC+CGG | - | chr7.3:22913763-22913782 | None:intergenic | 50.0% | |
| AAGTGGAGCTTGACAGGAGT+TGG | + | chr7.3:22913183-22913202 | MS.gene08200:CDS | 50.0% | |
| ATGGCTCAGTTAATCCGGGA+CGG | + | chr7.3:22913746-22913765 | MS.gene08200:intron | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr7.3:22914099-22914118 | None:intergenic | 50.0% | |
| CAAGGTTCCAAATGAAGGGC+TGG | + | chr7.3:22912882-22912901 | MS.gene08200:CDS | 50.0% | |
| GAAGGAGAGGACATGAATGG+TGG | + | chr7.3:22913147-22913166 | MS.gene08200:CDS | 50.0% | |
| GATCAGCTTCCTCTATCTCG+GGG | - | chr7.3:22912936-22912955 | None:intergenic | 50.0% | |
| TTGTGGAAGTGGAGCTTGAC+AGG | + | chr7.3:22913177-22913196 | MS.gene08200:CDS | 50.0% | |
| CTCAGTTAATCCGGGACGGA+GGG | + | chr7.3:22913750-22913769 | MS.gene08200:intron | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr7.3:22914095-22914114 | None:intergenic | 55.0% | |
| AACAAGTGCTCCCTCCGTCC+CGG | + | chr7.3:22914082-22914101 | MS.gene08200:intron | 60.0% | |
| GCTCAGTTAATCCGGGACGG+AGG | + | chr7.3:22913749-22913768 | MS.gene08200:intron | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr7.3:22914096-22914115 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 22912673 | 22914829 | 22912673 | ID=MS.gene08200 |
| chr7.3 | mRNA | 22912673 | 22914829 | 22912673 | ID=MS.gene08200.t1;Parent=MS.gene08200 |
| chr7.3 | exon | 22912673 | 22913332 | 22912673 | ID=MS.gene08200.t1.exon1;Parent=MS.gene08200.t1 |
| chr7.3 | CDS | 22912673 | 22913332 | 22912673 | ID=cds.MS.gene08200.t1;Parent=MS.gene08200.t1 |
| chr7.3 | exon | 22914713 | 22914829 | 22914713 | ID=MS.gene08200.t1.exon2;Parent=MS.gene08200.t1 |
| chr7.3 | CDS | 22914713 | 22914829 | 22914713 | ID=cds.MS.gene08200.t1;Parent=MS.gene08200.t1 |
| Gene Sequence |
| Protein sequence |
