AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08785

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08785.t1 MTR_8g085560 95.361 194 7 1 1 192 1 194 1.44e-131 367
MS.gene08785.t1 MTR_3g083760 47.059 187 80 2 23 192 18 202 1.27e-52 167
MS.gene08785.t1 MTR_3g083760 54.098 122 56 0 23 144 18 139 8.64e-47 150
MS.gene08785.t1 MTR_8g446830 38.728 173 104 2 15 185 13 185 5.61e-39 132
MS.gene08785.t1 MTR_7g014880 37.234 188 99 4 15 189 10 191 2.71e-38 130
MS.gene08785.t1 MTR_1g103450 37.736 106 58 3 9 113 6 104 4.57e-12 61.6
MS.gene08785.t1 MTR_1g103470 41.096 73 40 1 33 105 25 94 8.59e-12 60.8
MS.gene08785.t1 MTR_5g006950 27.778 144 94 4 15 154 12 149 4.09e-11 59.3
MS.gene08785.t1 MTR_5g006940 34.862 109 64 4 10 113 6 112 6.10e-11 59.7
MS.gene08785.t1 MTR_1g103490 39.024 82 48 2 33 113 25 105 8.01e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08785.t1 AT2G44300 36.275 204 110 3 6 192 3 203 4.46e-42 140
MS.gene08785.t1 AT2G44290 35.567 194 107 2 14 192 14 204 1.15e-41 139
MS.gene08785.t1 AT1G55260 41.622 185 96 5 10 190 50 226 1.35e-41 140
MS.gene08785.t1 AT1G55260 41.209 182 98 4 10 190 50 223 1.74e-41 139
MS.gene08785.t1 AT3G58550 39.333 150 88 2 8 154 10 159 2.84e-33 117
MS.gene08785.t1 AT3G22600 32.967 91 60 1 15 105 7 96 6.17e-14 67.0
MS.gene08785.t1 AT2G48130 35.000 100 63 2 15 113 9 107 1.74e-13 65.9
MS.gene08785.t1 AT2G48130 35.000 100 63 2 15 113 9 107 1.74e-13 65.9
MS.gene08785.t1 AT2G48130 35.000 100 63 2 15 113 9 107 1.74e-13 65.9
MS.gene08785.t1 AT2G48130 35.000 100 63 2 15 113 9 107 1.74e-13 65.9
MS.gene08785.t1 AT2G48130 35.000 100 63 2 15 113 9 107 1.74e-13 65.9
MS.gene08785.t1 AT2G48130 35.000 100 63 2 15 113 9 107 1.74e-13 65.9
MS.gene08785.t1 AT1G73890 36.471 85 54 0 29 113 23 107 4.03e-13 65.1
MS.gene08785.t1 AT4G14815 35.106 94 57 2 15 108 8 97 9.44e-12 60.8
MS.gene08785.t1 AT1G03103 32.967 91 57 1 15 105 8 94 3.82e-11 59.3
MS.gene08785.t1 AT1G05450 29.448 163 103 4 13 169 10 166 6.53e-11 59.3

Find 50 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTAGCCTCATGTGATTT+AGG 0.238066 4.2:+12856871 None:intergenic
ACAATCTATGGTTGGAGATT+TGG 0.249161 4.2:+12857163 None:intergenic
TACAATCCTTTGGTAACTTA+AGG 0.268613 4.2:+12857033 None:intergenic
GACACCAGTGCAACAATCTA+TGG 0.281431 4.2:+12857151 None:intergenic
ACCAATACATTGAGTTATAT+TGG 0.304514 4.2:+12857001 None:intergenic
TTTATAGTTAAACCAAGGTT+TGG 0.345145 4.2:+12857068 None:intergenic
GGTCATCATGATCTTTGATA+AGG 0.380512 4.2:+12857090 None:intergenic
ACAATCCTTTGGTAACTTAA+GGG 0.380953 4.2:+12857034 None:intergenic
GACAAGAACGGTGGCGGTTG+TGG 0.396527 4.2:-12855150 MS.gene08785:CDS
CGGTGCATTCTGCTTTGTCT+TGG 0.411232 4.2:+12857234 None:intergenic
GACAAACTCCTTACTTTGGC+TGG 0.412680 4.2:-12857212 MS.gene08785:CDS
GTAGGTGAGTTACAATCCTT+TGG 0.416024 4.2:+12857023 None:intergenic
TTATAGTTAAACCAAGGTTT+GGG 0.422627 4.2:+12857069 None:intergenic
CTCTTGGTAGAGGTGCTTTG+TGG 0.443821 4.2:-12855117 MS.gene08785:CDS
ACCAATATAACTCAATGTAT+TGG 0.457228 4.2:-12857002 MS.gene08785:intron
CACCGACAAACTCCTTACTT+TGG 0.466376 4.2:-12857216 MS.gene08785:CDS
GAAGACAACCAGCCAAAGTA+AGG 0.470397 4.2:+12857204 None:intergenic
ACATGAGGCTAAGGTATTTG+AGG 0.480429 4.2:-12856863 MS.gene08785:CDS
ACCTAAATCACATGAGGCTA+AGG 0.495814 4.2:-12856872 MS.gene08785:CDS
TTTGTCTTGGTTAATATCTG+AGG 0.495906 4.2:+12857247 None:intergenic
AAGTAGGAAACTAAAACAAA+TGG 0.516446 4.2:+12855087 None:intergenic
AAAGAGGTGGCTCTTGGTAG+AGG 0.525495 4.2:-12855127 MS.gene08785:CDS
ACTTCCACCGCAGTTCCTCC+AGG 0.529242 4.2:-12856814 MS.gene08785:intron
CATAAGGACTAGGAAAATCA+AGG 0.531221 4.2:+12857283 None:intergenic
GATCATGATGACCCAAACCT+TGG 0.532203 4.2:-12857080 MS.gene08785:CDS
TTGGCTTGATTAGTCACAAA+GGG 0.535509 4.2:+12857182 None:intergenic
TTGTGGAAAGAGGTGGCTCT+TGG 0.535765 4.2:-12855133 MS.gene08785:CDS
AATTCAAACTACGAAGAAGT+AGG 0.544914 4.2:+12855071 None:intergenic
CTTTGGTAACTTAAGGGCAA+GGG 0.546332 4.2:+12857040 None:intergenic
CCTTTGGTAACTTAAGGGCA+AGG 0.546657 4.2:+12857039 None:intergenic
AGGTTACAAGACCAAACATA+AGG 0.547469 4.2:+12857267 None:intergenic
CCAACCATAGATTGTTGCAC+TGG 0.548725 4.2:-12857155 MS.gene08785:CDS
TGTGCTTGTTTCATTTCCAG+TGG 0.551525 4.2:+12855182 None:intergenic
ATTGCAGCTAGTGGTACCAC+TGG 0.560811 4.2:-12855198 MS.gene08785:intron
CCTTGCCCTTAAGTTACCAA+AGG 0.561963 4.2:-12857039 MS.gene08785:CDS
ACGGTGGCGGTTGTGGAAAG+AGG 0.565669 4.2:-12855143 MS.gene08785:CDS
CAAGACCAAACATAAGGACT+AGG 0.566810 4.2:+12857273 None:intergenic
AGCCAAAGTAAGGAGTTTGT+CGG 0.567852 4.2:+12857214 None:intergenic
ATACATTGAGTTATATTGGT+AGG 0.586657 4.2:+12857005 None:intergenic
GCTCAAGACAAGAACGGTGG+CGG 0.587172 4.2:-12855156 MS.gene08785:CDS
CCAGTGCAACAATCTATGGT+TGG 0.604106 4.2:+12857155 None:intergenic
GTGGCGGTTGTGGAAAGAGG+TGG 0.614207 4.2:-12855140 MS.gene08785:CDS
TAACATTTATAGTTAAACCA+AGG 0.621795 4.2:+12857063 None:intergenic
TTTGGCTTGATTAGTCACAA+AGG 0.627914 4.2:+12857181 None:intergenic
TTTGAAACCTAAATCACATG+AGG 0.643872 4.2:-12856878 MS.gene08785:CDS
TTTACCTGGAGGAACTGCGG+TGG 0.660595 4.2:+12856810 None:intergenic
AAATTTACCTGGAGGAACTG+CGG 0.666666 4.2:+12856807 None:intergenic
ACAATTGCTCAAGACAAGAA+CGG 0.667135 4.2:-12855162 MS.gene08785:CDS
TTGTTGCACTGGTGTCAAAG+AGG 0.679195 4.2:-12857144 MS.gene08785:CDS
ATTGCTCAAGACAAGAACGG+TGG 0.760005 4.2:-12855159 MS.gene08785:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTATTAAAATATTTA+GGG - chr4.2:12856441-12856460 MS.gene08785:intron 0.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr4.2:12856131-12856150 None:intergenic 10.0%
!! AATTAAATATCAAATTTAAC+AGG + chr4.2:12856567-12856586 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr4.2:12856132-12856151 None:intergenic 10.0%
!! AATAGTAAATAAAATTTACC+TGG + chr4.2:12855604-12855623 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr4.2:12856130-12856149 None:intergenic 15.0%
!! GTTTAAAAATTAATGAAGTA+TGG - chr4.2:12856377-12856396 MS.gene08785:intron 15.0%
!! TTCTATTTGTTTGTTTATAT+GGG + chr4.2:12856842-12856861 None:intergenic 15.0%
!! TTTCTATTTGTTTGTTTATA+TGG + chr4.2:12856843-12856862 None:intergenic 15.0%
!!! ACAAATAAAAAGTATCATTT+GGG + chr4.2:12857010-12857029 None:intergenic 15.0%
!!! TTTTTAAACTTTTAATGCAA+TGG - chr4.2:12856742-12856761 MS.gene08785:intron 15.0%
!! AAAGTGGAATATATTGTATT+GGG + chr4.2:12856107-12856126 None:intergenic 20.0%
!! AATATAGAAACAAAAGACTA+AGG - chr4.2:12855643-12855662 MS.gene08785:intron 20.0%
!! GTTTGAAGAGAATAAAAATT+AGG - chr4.2:12856533-12856552 MS.gene08785:intron 20.0%
!! TAACATTTATAGTTAAACCA+AGG + chr4.2:12855337-12855356 None:intergenic 20.0%
!! TTATTAAAGATCATATAGTG+TGG + chr4.2:12855923-12855942 None:intergenic 20.0%
!!! CAATTTCTTTTTCTAAAGTT+AGG + chr4.2:12856922-12856941 None:intergenic 20.0%
!!! GACAAATAAAAAGTATCATT+TGG + chr4.2:12857011-12857030 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr4.2:12855997-12856016 None:intergenic 20.0%
!!! TATTTTTGGATAAAAGTGAT+TGG - chr4.2:12857160-12857179 MS.gene08785:CDS 20.0%
!!! TGAAACAAATATCAAACTTT+TGG + chr4.2:12855488-12855507 None:intergenic 20.0%
!!! TGATTTAAAATTTCCACTTT+TGG + chr4.2:12856712-12856731 None:intergenic 20.0%
!!! TTTTCTATCACATAATAAAG+TGG - chr4.2:12855786-12855805 MS.gene08785:intron 20.0%
! AAGTAGGAAACTAAAACAAA+TGG + chr4.2:12857313-12857332 None:intergenic 25.0%
! ACCAATACATTGAGTTATAT+TGG + chr4.2:12855399-12855418 None:intergenic 25.0%
! ACCAATATAACTCAATGTAT+TGG - chr4.2:12855395-12855414 MS.gene08785:intron 25.0%
! AGAAAAAGAAATTGATGTAG+AGG - chr4.2:12856928-12856947 MS.gene08785:intron 25.0%
! AGTAAATAAAATTTACCTGG+AGG + chr4.2:12855601-12855620 None:intergenic 25.0%
! ATACATTGAGTTATATTGGT+AGG + chr4.2:12855395-12855414 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG + chr4.2:12856108-12856127 None:intergenic 25.0%
! TTATAGTTAAACCAAGGTTT+GGG + chr4.2:12855331-12855350 None:intergenic 25.0%
! TTTATAGTTAAACCAAGGTT+TGG + chr4.2:12855332-12855351 None:intergenic 25.0%
!! ATCTCATTTGATTTCATTCT+AGG - chr4.2:12857099-12857118 MS.gene08785:CDS 25.0%
!! TATTTTTCTCCAAGGATTTT+TGG + chr4.2:12855564-12855583 None:intergenic 25.0%
!! TTGAAATGACTCAGTTATTT+TGG + chr4.2:12856020-12856039 None:intergenic 25.0%
!!! CACTATTTTGATTGACATTT+GGG + chr4.2:12856214-12856233 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr4.2:12855998-12856017 None:intergenic 25.0%
!!! TCACTATTTTGATTGACATT+TGG + chr4.2:12856215-12856234 None:intergenic 25.0%
!!! TCCTTGTATTTTACTGATTT+GGG + chr4.2:12855678-12855697 None:intergenic 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG + chr4.2:12856019-12856038 None:intergenic 25.0%
!!! TGATCTTGCTTGTTTATTTT+TGG - chr4.2:12857146-12857165 MS.gene08785:CDS 25.0%
!!! TTCCTTGTATTTTACTGATT+TGG + chr4.2:12855679-12855698 None:intergenic 25.0%
AAAATACAAGGAAGTCAAGA+AGG - chr4.2:12855686-12855705 MS.gene08785:intron 30.0%
AAATACAAGGAAGTCAAGAA+GGG - chr4.2:12855687-12855706 MS.gene08785:intron 30.0%
AAGACTCGAAAAACAAATTG+AGG - chr4.2:12856982-12857001 MS.gene08785:intron 30.0%
AATTCATTAATTGCAGCTAG+TGG - chr4.2:12857190-12857209 MS.gene08785:CDS 30.0%
ACCCAAATCAGTAAAATACA+AGG - chr4.2:12855674-12855693 MS.gene08785:intron 30.0%
AGACTCGAAAAACAAATTGA+GGG - chr4.2:12856983-12857002 MS.gene08785:intron 30.0%
CCTAGGTTTGTATATATCAA+CGG - chr4.2:12855727-12855746 MS.gene08785:intron 30.0%
CTAGGTTTGTATATATCAAC+GGG - chr4.2:12855728-12855747 MS.gene08785:intron 30.0%
CTTAATAGAGATTAGAGTGA+AGG + chr4.2:12857078-12857097 None:intergenic 30.0%
TAACAAAACATGAAGACCTA+AGG + chr4.2:12857049-12857068 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr4.2:12856123-12856142 None:intergenic 30.0%
TTTGTCTTGGTTAATATCTG+AGG + chr4.2:12855153-12855172 None:intergenic 30.0%
! ACAATCCTTTGGTAACTTAA+GGG + chr4.2:12855366-12855385 None:intergenic 30.0%
! ATTTTCCTAGTCCTTATGTT+TGG - chr4.2:12855119-12855138 MS.gene08785:CDS 30.0%
! TACAATCCTTTGGTAACTTA+AGG + chr4.2:12855367-12855386 None:intergenic 30.0%
! TTTGAAACCTAAATCACATG+AGG - chr4.2:12855519-12855538 MS.gene08785:intron 30.0%
ACAATCTATGGTTGGAGATT+TGG + chr4.2:12855237-12855256 None:intergenic 35.0%
ACAATTGCTCAAGACAAGAA+CGG - chr4.2:12857235-12857254 MS.gene08785:CDS 35.0%
AGAAAATGGGTCAGATATTC+CGG + chr4.2:12855984-12856003 None:intergenic 35.0%
AGGTTACAAGACCAAACATA+AGG + chr4.2:12855133-12855152 None:intergenic 35.0%
CATAAGGACTAGGAAAATCA+AGG + chr4.2:12855117-12855136 None:intergenic 35.0%
CCGTTGATATATACAAACCT+AGG + chr4.2:12855730-12855749 None:intergenic 35.0%
GGTCATCATGATCTTTGATA+AGG + chr4.2:12855310-12855329 None:intergenic 35.0%
! TTGGCTTGATTAGTCACAAA+GGG + chr4.2:12855218-12855237 None:intergenic 35.0%
!! TTTACTGATTTGGGTCATGT+GGG + chr4.2:12855669-12855688 None:intergenic 35.0%
!! TTTGGCTTGATTAGTCACAA+AGG + chr4.2:12855219-12855238 None:intergenic 35.0%
!!! TTTTACTGATTTGGGTCATG+TGG + chr4.2:12855670-12855689 None:intergenic 35.0%
AAATTTACCTGGAGGAACTG+CGG + chr4.2:12855593-12855612 None:intergenic 40.0%
ACCTAAATCACATGAGGCTA+AGG - chr4.2:12855525-12855544 MS.gene08785:intron 40.0%
ACCTTAGCCTCATGTGATTT+AGG + chr4.2:12855529-12855548 None:intergenic 40.0%
ACTTAATACTCCCTTCGTTC+CGG - chr4.2:12855962-12855981 MS.gene08785:intron 40.0%
AGCCAAAGTAAGGAGTTTGT+CGG + chr4.2:12855186-12855205 None:intergenic 40.0%
ATCTGTGTGAAATGAGCCAT+TGG - chr4.2:12856152-12856171 MS.gene08785:intron 40.0%
CAACGACTCTAAATAGCCTT+AGG - chr4.2:12857030-12857049 MS.gene08785:CDS 40.0%
CAAGACCAAACATAAGGACT+AGG + chr4.2:12855127-12855146 None:intergenic 40.0%
CATATAGTGTGGTCCAGTAA+GGG + chr4.2:12855912-12855931 None:intergenic 40.0%
CTGGTTAAGGAATCCAAAAG+TGG - chr4.2:12856696-12856715 MS.gene08785:intron 40.0%
GATATATACAAACCTAGGCG+TGG + chr4.2:12855725-12855744 None:intergenic 40.0%
GTAGGTGAGTTACAATCCTT+TGG + chr4.2:12855377-12855396 None:intergenic 40.0%
TCATATAGTGTGGTCCAGTA+AGG + chr4.2:12855913-12855932 None:intergenic 40.0%
TCCCAATTTATCTGAGCCAA+TGG + chr4.2:12856171-12856190 None:intergenic 40.0%
TGAGGACTTCCAAAAATCCT+TGG - chr4.2:12855552-12855571 MS.gene08785:intron 40.0%
TGTGCTTGTTTCATTTCCAG+TGG + chr4.2:12857218-12857237 None:intergenic 40.0%
TTGGCTCAGATAAATTGGGA+CGG - chr4.2:12856171-12856190 MS.gene08785:intron 40.0%
! ACATGAGGCTAAGGTATTTG+AGG - chr4.2:12855534-12855553 MS.gene08785:intron 40.0%
! CTTTGGTAACTTAAGGGCAA+GGG + chr4.2:12855360-12855379 None:intergenic 40.0%
! CTTTTGGATTCCTTAACCAG+TGG + chr4.2:12856696-12856715 None:intergenic 40.0%
!! AGCCATTGGCTCAGATAAAT+TGG - chr4.2:12856166-12856185 MS.gene08785:intron 40.0%
!! GCCATTGGCTCAGATAAATT+GGG - chr4.2:12856167-12856186 MS.gene08785:intron 40.0%
!!! GGTGGAAGTATTTTTCTCCA+AGG + chr4.2:12855572-12855591 None:intergenic 40.0%
!!! GGTTGCACAACTTTTAAAGC+AGG - chr4.2:12856763-12856782 MS.gene08785:intron 40.0%
ATTGCTCAAGACAAGAACGG+TGG - chr4.2:12857238-12857257 MS.gene08785:CDS 45.0%
CACCGACAAACTCCTTACTT+TGG - chr4.2:12855181-12855200 MS.gene08785:CDS 45.0%
CCAACCATAGATTGTTGCAC+TGG - chr4.2:12855242-12855261 MS.gene08785:intron 45.0%
CCAGTGCAACAATCTATGGT+TGG + chr4.2:12855245-12855264 None:intergenic 45.0%
CCTTGCCCTTAAGTTACCAA+AGG - chr4.2:12855358-12855377 MS.gene08785:intron 45.0%
CTCAGATAAATTGGGACGGA+GGG - chr4.2:12856175-12856194 MS.gene08785:intron 45.0%
GAAGACAACCAGCCAAAGTA+AGG + chr4.2:12855196-12855215 None:intergenic 45.0%
GACAAACTCCTTACTTTGGC+TGG - chr4.2:12855185-12855204 MS.gene08785:CDS 45.0%
GACACCAGTGCAACAATCTA+TGG + chr4.2:12855249-12855268 None:intergenic 45.0%
GATCATGATGACCCAAACCT+TGG - chr4.2:12855317-12855336 MS.gene08785:intron 45.0%
GTCAGATATTCCGGAACGAA+GGG + chr4.2:12855975-12855994 None:intergenic 45.0%
TACAAGGAAGTCAAGAAGGG+TGG - chr4.2:12855690-12855709 MS.gene08785:intron 45.0%
TATACAAACCTAGGCGTGGA+TGG + chr4.2:12855721-12855740 None:intergenic 45.0%
! AGCGTAGCATTGAAACTTCG+AGG - chr4.2:12856873-12856892 MS.gene08785:CDS 45.0%
! CCTTTGGTAACTTAAGGGCA+AGG + chr4.2:12855361-12855380 None:intergenic 45.0%
! TTGTTGCACTGGTGTCAAAG+AGG - chr4.2:12855253-12855272 MS.gene08785:intron 45.0%
!! GTAGATTTTAACCAGTGCCC+CGG - chr4.2:12856669-12856688 MS.gene08785:intron 45.0%
!! TAGATTTTAACCAGTGCCCC+GGG - chr4.2:12856670-12856689 MS.gene08785:intron 45.0%
!! TTGAAACTTCGAGGTGTCGA+TGG - chr4.2:12856882-12856901 MS.gene08785:CDS 45.0%
!!! CATATTTTATTAAAATATTT+AGG - chr4.2:12856440-12856459 MS.gene08785:intron 5.0%
AAAGAGGTGGCTCTTGGTAG+AGG - chr4.2:12857270-12857289 MS.gene08785:CDS 50.0%
AAATGTTAACCAGTGCCCCG+GGG + chr4.2:12856819-12856838 None:intergenic 50.0%
ATTGCAGCTAGTGGTACCAC+TGG - chr4.2:12857199-12857218 MS.gene08785:CDS 50.0%
CGGTGCATTCTGCTTTGTCT+TGG + chr4.2:12855166-12855185 None:intergenic 50.0%
GAAATGTTAACCAGTGCCCC+GGG + chr4.2:12856820-12856839 None:intergenic 50.0%
GCTCAGATAAATTGGGACGG+AGG - chr4.2:12856174-12856193 MS.gene08785:intron 50.0%
GGAAATGTTAACCAGTGCCC+CGG + chr4.2:12856821-12856840 None:intergenic 50.0%
GGTCAGATATTCCGGAACGA+AGG + chr4.2:12855976-12855995 None:intergenic 50.0%
GTTAATCGAGCTGCCCTTAC+TGG - chr4.2:12855896-12855915 MS.gene08785:intron 50.0%
TGGAATTTCCATCCACGCCT+AGG - chr4.2:12855710-12855729 MS.gene08785:intron 50.0%
TTGTGGAAAGAGGTGGCTCT+TGG - chr4.2:12857264-12857283 MS.gene08785:CDS 50.0%
!! CTCTTGGTAGAGGTGCTTTG+TGG - chr4.2:12857280-12857299 MS.gene08785:CDS 50.0%
ATTCCTTAACCAGTGGCCCG+GGG + chr4.2:12856689-12856708 None:intergenic 55.0%
GATTCCTTAACCAGTGGCCC+GGG + chr4.2:12856690-12856709 None:intergenic 55.0%
GCTCAAGACAAGAACGGTGG+CGG - chr4.2:12857241-12857260 MS.gene08785:CDS 55.0%
GGATTCCTTAACCAGTGGCC+CGG + chr4.2:12856691-12856710 None:intergenic 55.0%
TGACTCCTTAACCAGTGCCC+CGG - chr4.2:12856799-12856818 MS.gene08785:intron 55.0%
TTTACCTGGAGGAACTGCGG+TGG + chr4.2:12855590-12855609 None:intergenic 55.0%
ACTCCTTAACCAGTGCCCCG+GGG - chr4.2:12856801-12856820 MS.gene08785:intron 60.0%
ACTTCCACCGCAGTTCCTCC+AGG - chr4.2:12855583-12855602 MS.gene08785:intron 60.0%
GACTCCTTAACCAGTGCCCC+GGG - chr4.2:12856800-12856819 MS.gene08785:intron 60.0%
GTGGCGGTTGTGGAAAGAGG+TGG - chr4.2:12857257-12857276 MS.gene08785:CDS 60.0%
! ACGGTGGCGGTTGTGGAAAG+AGG - chr4.2:12857254-12857273 MS.gene08785:CDS 60.0%
! GACAAGAACGGTGGCGGTTG+TGG - chr4.2:12857247-12857266 MS.gene08785:CDS 60.0%
TAACCAGTGCCCCGGGCCAC+TGG - chr4.2:12856677-12856696 MS.gene08785:intron 70.0%
TAACCAGTGCCCCGGGGCAC+TGG - chr4.2:12856807-12856826 MS.gene08785:intron 70.0%
TAACCAGTGCCCCGGGGCAC+TGG + chr4.2:12856826-12856807 None:intergenic 70.0%
TAACCAGTGGCCCGGGGCAC+TGG + chr4.2:12856683-12856702 None:intergenic 70.0%
! GTGCCCCGGGCCACTGGTTA+AGG - chr4.2:12856683-12856702 MS.gene08785:intron 70.0%
!! GTGCCCCGGGGCACTGGTTA+AGG + chr4.2:12856832-12856813 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 12855074 12857345 12855074 ID=MS.gene08785
chr4.2 mRNA 12855074 12857345 12855074 ID=MS.gene08785.t1;Parent=MS.gene08785
chr4.2 exon 12857003 12857345 12857003 ID=MS.gene08785.t1.exon1;Parent=MS.gene08785.t1
chr4.2 CDS 12857003 12857345 12857003 ID=cds.MS.gene08785.t1;Parent=MS.gene08785.t1
chr4.2 exon 12856815 12856910 12856815 ID=MS.gene08785.t1.exon2;Parent=MS.gene08785.t1
chr4.2 CDS 12856815 12856910 12856815 ID=cds.MS.gene08785.t1;Parent=MS.gene08785.t1
chr4.2 exon 12855074 12855213 12855074 ID=MS.gene08785.t1.exon3;Parent=MS.gene08785.t1
chr4.2 CDS 12855074 12855213 12855074 ID=cds.MS.gene08785.t1;Parent=MS.gene08785.t1
Gene Sequence

>MS.gene08785

ATGGGTTGCAAAAGCACAACAAATCTATCACTCTTCTCTACCTTGATTTTCCTAGTCCTTATGTTTGGTCTTGTAACCTCAGATATTAACCAAGACAAAGCAGAATGCACCGACAAACTCCTTACTTTGGCTGGTTGTCTTCCCTTTGTGACTAATCAAGCCAAATCTCCAACCATAGATTGTTGCACTGGTGTCAAAGAGGTTGTTGATAAGAGTAAGAGATGTTTATGTATCCTTATCAAAGATCATGATGACCCAAACCTTGGTTTAACTATAAATGTTACCCTTGCCCTTAAGTTACCAAAGGATTGTAACTCACCTACCAATATAACTCAATGTATTGGTAAGTAAATATCTTATCTTCAATATATGACTCTAATTAGTCTTATGTTTATGCTTTTGTGTTTCAAGCCAAAAGTTTGATATTTGTTTCAGATATTTTGCATTTGAAACCTAAATCACATGAGGCTAAGGTATTTGAGGACTTCCAAAAATCCTTGGAGAAAAATACTTCCACCGCAGTTCCTCCAGGTAAATTTTATTTACTATTTTTTAATCTTAAATAAAATAATATAGAAACAAAAGACTAAGGCCCACATGACCCAAATCAGTAAAATACAAGGAAGTCAAGAAGGGTGGAATTTCCATCCACGCCTAGGTTTGTATATATCAACGGGTCTTTGATGTGAAAGAACACACTATATGATTTTTTTTTTCTATCACATAATAAAGTGGCTAAATTTACGCACAATAAATATAAAGAAGTAGAGAATCTGATGTTTGAATCTCAACTATTACATAATAATGTATATATAAAAAATTGTTAATCGAGCTGCCCTTACTGGACCACACTATATGATCTTTAATAATTAATGCATAAAATTATTAACTTAATACTCCCTTCGTTCCGGAATATCTGACCCATTTTCTAAAAAAAAGTGTCCCAAAATAACTGAGTCATTTCAATTTTCAATACAACTTTCATCATTCTCAATACAATATAACACTAAATAATACTACTATTATCATTCCCAATACAATATATTCCACTTTCCCCTTTATTTATACATTTTTCTTAATCTGTGTGAAATGAGCCATTGGCTCAGATAAATTGGGACGGAGGGAGTACTATATTATCCCAAATGTCAATCAAAATAGTGATTTATTTATAAAAAAATAAATAAAAATATACTATTTCTATCTACATTTTAAATTTTAAATGTTTAATTACATTGTTTGTCTCTATTGTTTGAGCAATGTGTGACTTTGATCTCTAGCTTTTTTGAGTGATTTAGTCGATCTTGTTTAAAAATTAATGAAGTATGGTCTACTATCAAGTGTATTTCACATAAATCATTTAAAGTATCATATTTTATTAAAATATTTAGGGTTCATGATGAATTTGAGATATAAAATAAAAAGTAAAATATTTGATCAATTTTGTATAATTTCATATTATGTTTGAAGAGAATAAAAATTAGGATTTTTTTCCTGTTAAATTTGATATTTAATTTGTAAATTTTTAAGTGAAATAATGTTAAAAGTCATTTCATCAATACAAATTGTGAAATTTTTAAAATAGATTATGAAAATGTGTAGATTTTAACCAGTGCCCCGGGCCACTGGTTAAGGAATCCAAAAGTGGAAATTTTAAATCAAAAAGAACACTTTTTAAACTTTTAATGCAATGGTTGCACAACTTTTAAAGCAGGATACTACTATATTTGACTCCTTAACCAGTGCCCCGGGGCACTGGTTAACATTTCCCATATAAACAAACAAATAGAAAATAGATGAAGAGCGTAGCATTGAAACTTCGAGGTGTCGATGGAAGATTTTTCTTTTCCTAACTTTAGAAAAAGAAATTGATGTAGAGGCTTAATTGAAACAATTAAAAACTTGAGTGCTAAGACTCGAAAAACAAATTGAGGGACCCAAATGATACTTTTTATTTGTCAACGACTCTAAATAGCCTTAGGTCTTCATGTTTTGTTAAGAGAACCTTCACTCTAATCTCTATTAAGAATCTCATTTGATTTCATTCTAGGTTTTTTTTTTTTTTTTGCTCAATGTGATCTTGCTTGTTTATTTTTGGATAAAAGTGATTGGAACTAGAAATTCATTAATTGCAGCTAGTGGTACCACTGGAAATGAAACAAGCACAATTGCTCAAGACAAGAACGGTGGCGGTTGTGGAAAGAGGTGGCTCTTGGTAGAGGTGCTTTGTGGCATTTTACCATTTGTTTTAGTTTCCTACTTCTTCGTAGTTTGA
Protein sequence

>MS.gene08785.t1

MGCKSTTNLSLFSTLIFLVLMFGLVTSDINQDKAECTDKLLTLAGCLPFVTNQAKSPTIDCCTGVKEVVDKSKRCLCILIKDHDDPNLGLTINVTLALKLPKDCNSPTNITQCIDILHLKPKSHEAKVFEDFQKSLEKNTSTAVPPASGTTGNETSTIAQDKNGGGCGKRWLLVEVLCGILPFVLVSYFFVV