AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08979


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08979.t1 MTR_8g083140 97.936 436 8 1 1 435 1 436 0.0 845
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08979.t1 AT5G17900 67.882 439 132 7 1 434 1 435 7.22e-175 496
MS.gene08979.t1 AT4G08580 69.248 439 126 7 1 434 1 435 1.22e-173 493
MS.gene08979.t1 AT4G08580 69.248 439 126 7 1 434 1 435 1.22e-173 493

Find 128 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGATAACCGTGAGGAAGTT+AGG 0.251826 4.4:+14923449 MS.gene08979:CDS
GATAAGCTTAGAGGTAAAAT+TGG 0.289985 4.4:+14923235 MS.gene08979:CDS
AAACAAAAGTGAATCGTTAT+TGG 0.302600 4.4:+14923260 MS.gene08979:CDS
GGAGAGAAGAAGACGGATTA+AGG 0.319392 4.4:+14923579 MS.gene08979:CDS
TTTGAGGATTGAGAAGGTTT+TGG 0.325987 4.4:-14924114 None:intergenic
CTTCCTTTAGGCTTCGCTAT+AGG 0.327439 4.4:-14925530 None:intergenic
CGCGATTTCTCTGCACCAAC+CGG 0.331303 4.4:+14924240 MS.gene08979:CDS
GCTTGGAAAGTGAGAGAGAT+TGG 0.332784 4.4:+14923979 MS.gene08979:CDS
ATCCGATAGGGAAGCTGCTT+TGG 0.345626 4.4:+14923342 MS.gene08979:CDS
ATTGTATCTCTCTCCGACTT+TGG 0.346170 4.4:-14923751 None:intergenic
AAATCTCCATTTCTGCTTTG+AGG 0.348536 4.4:-14924130 None:intergenic
ACCAACCGGGGAAGATAAAA+TGG 0.352546 4.4:+14924254 MS.gene08979:CDS
TGCCATTCTCTCATTATACT+TGG 0.364123 4.4:-14925495 None:intergenic
GAAGCAGAAAATTGAAGGAT+TGG 0.391898 4.4:+14925549 MS.gene08979:CDS
CTCAATCCTCAAAGCAGAAA+TGG 0.400415 4.4:+14924124 MS.gene08979:CDS
ATCTCCTTATCAGCCCATTC+GGG 0.406019 4.4:-14923295 None:intergenic
AGCTCCCGAATGGGCTGATA+AGG 0.412252 4.4:+14923291 MS.gene08979:CDS
GGAGGAAGAAGAAGAGGAGG+AGG 0.418431 4.4:+14923660 MS.gene08979:CDS
GATCTCCTTATCAGCCCATT+CGG 0.419914 4.4:-14923296 None:intergenic
AAGAAGATACTGCTATTGTT+AGG 0.422202 4.4:+14923386 MS.gene08979:CDS
TGCTTGACTTGCATAACCTT+GGG 0.433125 4.4:-14924291 None:intergenic
GGAAGCAAGGAAGAGGAGAA+TGG 0.439115 4.4:+14923816 MS.gene08979:CDS
CCTCTTCGCCTCCTCTTCAA+TGG 0.439943 4.4:-14923512 None:intergenic
AGATTGTTGTTGAGGAGATT+CGG 0.443421 4.4:+14923863 MS.gene08979:CDS
GGAAGAGGAGGAAGAAGAAG+AGG 0.449096 4.4:+14923654 MS.gene08979:CDS
AAGAAGAGGTTGAGAGGGTG+AGG 0.449581 4.4:+14924049 MS.gene08979:CDS
CAGAGGAGGAAAGGAGAGAG+TGG 0.451754 4.4:+14924079 MS.gene08979:CDS
AAGCAGAAAATTGAAGGATT+GGG 0.452417 4.4:+14925550 MS.gene08979:CDS
GCCCATTCGGGAGCTTTACC+AGG 0.457240 4.4:-14923283 None:intergenic
TTGGTAGGATCAAGCGGGAT+AGG 0.457251 4.4:+14923998 MS.gene08979:CDS
GGCGAAGAGGCAGGAAGGGT+TGG 0.460524 4.4:+14923525 MS.gene08979:CDS
GGGAGGATCATAGAAGAATT+CGG 0.461187 4.4:+14923470 MS.gene08979:CDS
GTGATACAGTAATAGCTGTA+AGG 0.463519 4.4:+14923212 MS.gene08979:CDS
AGGAAAGGAGAGAGTGGGAA+AGG 0.467563 4.4:+14924085 MS.gene08979:CDS
TCAGGAAGAGGAGGAGGAAG+AGG 0.472397 4.4:+14923639 MS.gene08979:CDS
AGAGGAGGAAGAAGAAGAGG+AGG 0.474008 4.4:+14923657 MS.gene08979:CDS
GCCTGGTAAAGCTCCCGAAT+GGG 0.475873 4.4:+14923282 MS.gene08979:CDS
AGCTGAAGAGGAGGCTCTTG+AGG 0.477467 4.4:+14923795 MS.gene08979:CDS
GTGCTTGACTTGCATAACCT+TGG 0.482408 4.4:-14924292 None:intergenic
TGGTAGGATCAAGCGGGATA+GGG 0.489340 4.4:+14923999 MS.gene08979:CDS
CTCGGTCATCAGAATTAGAC+TGG 0.494391 4.4:-14924185 None:intergenic
GAAGTTGCGTCAGAGAGATC+AGG 0.497425 4.4:+14923603 MS.gene08979:CDS
GGACCGTGAGGCACTGTTGA+AGG 0.497537 4.4:+14924023 MS.gene08979:CDS
AGATAACCGTGAGGAAGTTA+GGG 0.501653 4.4:+14923450 MS.gene08979:CDS
AAGAACTAAGTGGTCCCATC+TGG 0.502200 4.4:+14924329 MS.gene08979:CDS
TAAAGGAAGCAGAAAATTGA+AGG 0.508497 4.4:+14925544 MS.gene08979:CDS
TGAAGAGGAGGCGAAGAGGC+AGG 0.509564 4.4:+14923516 MS.gene08979:CDS
AAAGTGAATCGTTATTGGCC+TGG 0.515029 4.4:+14923265 MS.gene08979:CDS
GCGCCTATAGCGAAGCCTAA+AGG 0.515281 4.4:+14925527 MS.gene08979:CDS
AAGAACAATGTCTGTAACAG+CGG 0.516762 4.4:+14923183 None:intergenic
TCAGGAGGAAGCGCTTCCTC+AGG 0.518120 4.4:+14923621 MS.gene08979:CDS
CTCTTGAGGAAGCAAGGAAG+AGG 0.518804 4.4:+14923809 MS.gene08979:CDS
GATGACCGAGCTGCCACTGT+TGG 0.522346 4.4:+14924198 MS.gene08979:CDS
GCTGTAAGGGATAAGCTTAG+AGG 0.522415 4.4:+14923226 MS.gene08979:CDS
GCCTGTGTTTGTTCCAAAGT+CGG 0.523438 4.4:+14923738 MS.gene08979:CDS
AGAGGAGGAAAGGAGAGAGT+GGG 0.529175 4.4:+14924080 MS.gene08979:CDS
GGAAGAGGAGAATGGAGGAG+AGG 0.532365 4.4:+14923824 MS.gene08979:CDS
GACGAGGCAGATTGTTGTTG+AGG 0.535442 4.4:+14923855 MS.gene08979:CDS
GAGGAGGCGAAGAGGCAGGA+AGG 0.535811 4.4:+14923520 MS.gene08979:CDS
GGCCTGGTAAAGCTCCCGAA+TGG 0.539602 4.4:+14923281 MS.gene08979:CDS
AAGGAGATCGAAGATGCATC+CGG 0.541473 4.4:+14923310 MS.gene08979:CDS
ATCCAAAGCAGCTTCCCTAT+CGG 0.542865 4.4:-14923344 None:intergenic
TTGTTAGGAAAGATGATCGT+AGG 0.542956 4.4:+14923401 MS.gene08979:CDS
CGGTGATATTAGATCCGATA+GGG 0.543095 4.4:+14923330 MS.gene08979:CDS
GCGATTTCTCTGCACCAACC+GGG 0.543936 4.4:+14924241 MS.gene08979:CDS
TCAATGAGGACACTACTGAT+TGG 0.545194 4.4:+14924352 MS.gene08979:CDS
AGGCAGAGGAATATGAAGCT+TGG 0.545681 4.4:+14923962 MS.gene08979:CDS
AGGAGGCTCTTGAGGAAGCA+AGG 0.551309 4.4:+14923803 MS.gene08979:CDS
TGATACAGTAATAGCTGTAA+GGG 0.551558 4.4:+14923213 MS.gene08979:CDS
AGCAAGGAAGAGGAGAATGG+AGG 0.552786 4.4:+14923819 MS.gene08979:CDS
TGATGAACTCAACGAGGCAG+AGG 0.554539 4.4:+14923948 MS.gene08979:CDS
GGAACATGACAGAGGAGGAA+AGG 0.554822 4.4:+14924070 MS.gene08979:CDS
TTCTGCTTTGAGGATTGAGA+AGG 0.556899 4.4:-14924120 None:intergenic
TGTTGTTGAGGAGATTCGGA+AGG 0.557175 4.4:+14923867 MS.gene08979:CDS
AGCCAAGTATAATGAGAGAA+TGG 0.558111 4.4:+14925493 MS.gene08979:CDS
TCCGACTTTGGAACAAACAC+AGG 0.558554 4.4:-14923739 None:intergenic
TAGTGTCCTCATTGACCAGA+TGG 0.558983 4.4:-14924344 None:intergenic
GTTATGCAAGTCAAGCACTT+TGG 0.559100 4.4:+14924297 MS.gene08979:CDS
AGAACAAGATGAGGATGCTA+TGG 0.559867 4.4:+14923555 MS.gene08979:CDS
TTTCCTTCAACAGTGCCTCA+CGG 0.561106 4.4:-14924026 None:intergenic
AGGAGGCGAAGAGGCAGGAA+GGG 0.561535 4.4:+14923521 MS.gene08979:CDS
CAGTTCCAACAGTGGCAGCT+CGG 0.562006 4.4:-14924203 None:intergenic
GCTTCCTCAGGAAGAGGAGG+AGG 0.562101 4.4:+14923633 MS.gene08979:CDS
GGATCATAGAAGAATTCGGC+AGG 0.567431 4.4:+14923474 MS.gene08979:CDS
TGAGCGTCTCGAAGCTGAAG+AGG 0.568841 4.4:+14923783 MS.gene08979:CDS
GGAGTACACTGGAGTAGCTA+TGG 0.568901 4.4:+14923711 MS.gene08979:CDS
GGAAAGTGAGAGAGATTGGT+AGG 0.569136 4.4:+14923983 MS.gene08979:CDS
TGTTTCTACCATTGAAGAGG+AGG 0.573119 4.4:+14923504 MS.gene08979:CDS
GGAAGCGCTTCCTCAGGAAG+AGG 0.574937 4.4:+14923627 MS.gene08979:CDS
GTCAAGCACTTTGGTCGCAG+TGG 0.576557 4.4:+14924306 MS.gene08979:CDS
GGAAGAGGAGGAGGAAGAGG+AGG 0.582995 4.4:+14923642 MS.gene08979:CDS
TTCGTAGATTGATTGAGAGT+AGG 0.587666 4.4:+14923425 MS.gene08979:CDS
GGATTTAGAAGAACAAGATG+AGG 0.588247 4.4:+14923546 MS.gene08979:CDS
GATTGTTTCTACCATTGAAG+AGG 0.588252 4.4:+14923501 MS.gene08979:CDS
CCTATCGGATCTAATATCAC+CGG 0.588778 4.4:-14923329 None:intergenic
AGAACAATGTCTGTAACAGC+GGG 0.592553 4.4:+14923184 None:intergenic
TCATTATACTTGGCTCGAAG+TGG 0.594495 4.4:-14925485 None:intergenic
TAGGATCAAGCGGGATAGGG+AGG 0.598493 4.4:+14924002 MS.gene08979:CDS
TCTTCCTCCTCCTCTTCCTG+AGG 0.605487 4.4:-14923637 None:intergenic
AGAGATTGGTAGGATCAAGC+GGG 0.617603 4.4:+14923993 MS.gene08979:CDS
ACAAGATGAGGATGCTATGG+CGG 0.622020 4.4:+14923558 MS.gene08979:CDS
AGCGCTTCCTCAGGAAGAGG+AGG 0.622259 4.4:+14923630 MS.gene08979:CDS
GAGAGATTGGTAGGATCAAG+CGG 0.624400 4.4:+14923992 MS.gene08979:CDS
GATTCTGATGAGGAGTACAC+TGG 0.625099 4.4:+14923700 MS.gene08979:CDS
GGACAAGACAATACTGCCCA+AGG 0.625247 4.4:+14924275 MS.gene08979:CDS
CGATTTCTCTGCACCAACCG+GGG 0.628439 4.4:+14924242 MS.gene08979:CDS
GTTGCGTCAGAGAGATCAGG+AGG 0.629878 4.4:+14923606 MS.gene08979:CDS
AGTGTCCTCATTGACCAGAT+GGG 0.631636 4.4:-14924343 None:intergenic
AATATTATCAGTTCCAACAG+TGG 0.632023 4.4:-14924211 None:intergenic
CCATTGAAGAGGAGGCGAAG+AGG 0.634604 4.4:+14923512 MS.gene08979:CDS
GTGGTCCCATCTGGTCAATG+AGG 0.637794 4.4:+14924338 MS.gene08979:CDS
GGAGGCGAATATTGCTGATG+TGG 0.645251 4.4:+14923918 MS.gene08979:CDS
GCGTCTCGAAGCTGAAGAGG+AGG 0.648995 4.4:+14923786 MS.gene08979:CDS
GGTGAGGAACATGACAGAGG+AGG 0.656523 4.4:+14924065 MS.gene08979:CDS
GATCCTCCCTAACTTCCTCA+CGG 0.662585 4.4:-14923456 None:intergenic
GCGGGATAGGGAGGACCGTG+AGG 0.664182 4.4:+14924011 MS.gene08979:CDS
CCGGTGATATTAGATCCGAT+AGG 0.665741 4.4:+14923329 MS.gene08979:CDS
TAACCGTGAGGAAGTTAGGG+AGG 0.675353 4.4:+14923453 MS.gene08979:CDS
CTATGGCGGAGAGAAGAAGA+CGG 0.676104 4.4:+14923572 MS.gene08979:CDS
GCAGTATCTTCTTCATGACG+AGG 0.684698 4.4:-14923376 None:intergenic
GTCGCAGTGGAAGAACTAAG+TGG 0.690347 4.4:+14924319 MS.gene08979:CDS
GTATGATACTGATTCTGATG+AGG 0.693722 4.4:+14923690 MS.gene08979:CDS
GAGGGTGAGGAACATGACAG+AGG 0.694024 4.4:+14924062 MS.gene08979:CDS
TATGCAGAAATACTATCACA+AGG 0.695360 4.4:+14924152 MS.gene08979:CDS
CACTGATGATGAACTCAACG+AGG 0.706626 4.4:+14923942 MS.gene08979:CDS
ATGCAGAAATACTATCACAA+GGG 0.716221 4.4:+14924153 MS.gene08979:CDS
AGGAGAGGAGAAATGAGACG+AGG 0.721838 4.4:+14923839 MS.gene08979:CDS
GAGTAGGACAGATAACCGTG+AGG 0.734497 4.4:+14923441 MS.gene08979:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTAATTAATATAATGATTA+AGG + chr4.4:14924820-14924839 MS.gene08979:intron 10.0%
!! TAATATCAACTAATAGAAAA+TGG - chr4.4:14924432-14924451 None:intergenic 15.0%
!! TATTATTGAAAGATATTCAA+GGG - chr4.4:14924399-14924418 None:intergenic 15.0%
!!! GTTTATTTTTAAATGAAATC+TGG + chr4.4:14925113-14925132 MS.gene08979:intron 15.0%
!! AAAATAAATCAATAATCCAG+AGG - chr4.4:14925407-14925426 None:intergenic 20.0%
!! CTATTATTGAAAGATATTCA+AGG - chr4.4:14924400-14924419 None:intergenic 20.0%
!! TGAATATCTTTCAATAATAG+CGG + chr4.4:14924400-14924419 MS.gene08979:intron 20.0%
!! TTGTCCTAGAAATTAAAAAA+GGG + chr4.4:14925357-14925376 MS.gene08979:intron 20.0%
!!! AATTCAGAAACATTTTGAAT+TGG + chr4.4:14923897-14923916 MS.gene08979:CDS 20.0%
!!! TATAATAAGATGCATTGATA+AGG + chr4.4:14924627-14924646 MS.gene08979:intron 20.0%
! AAAAACAAATAAAACCCACA+AGG - chr4.4:14924749-14924768 None:intergenic 25.0%
! AAACAAAAGTGAATCGTTAT+TGG + chr4.4:14923260-14923279 MS.gene08979:CDS 25.0%
! AAATCCTAAAAATCTCCATA+AGG - chr4.4:14925275-14925294 None:intergenic 25.0%
! AATCCTAAAAATCTCCATAA+GGG - chr4.4:14925274-14925293 None:intergenic 25.0%
! ACCAATTTATAAACAGCAAA+AGG + chr4.4:14924940-14924959 MS.gene08979:intron 25.0%
! ATAAAAACAAACAGGAACAT+AGG - chr4.4:14924723-14924742 None:intergenic 25.0%
! ATCCAAAACAAACAGATAAA+AGG - chr4.4:14924902-14924921 None:intergenic 25.0%
! CTTGTCCTAGAAATTAAAAA+AGG + chr4.4:14925356-14925375 MS.gene08979:intron 25.0%
! TCAAACAAAATGCAGTATAA+AGG - chr4.4:14924691-14924710 None:intergenic 25.0%
! TGTCCTAGAAATTAAAAAAG+GGG + chr4.4:14925358-14925377 MS.gene08979:intron 25.0%
!! AACCTTTTATCTGTTTGTTT+TGG + chr4.4:14924897-14924916 MS.gene08979:intron 25.0%
!! AATTAAAAAAGGGGTTTTCT+AGG + chr4.4:14925367-14925386 MS.gene08979:intron 25.0%
!! GATTTTATATTGAGAAGCTT+TGG + chr4.4:14924576-14924595 MS.gene08979:intron 25.0%
!!! AAACCCCTTTTTTAATTTCT+AGG - chr4.4:14925364-14925383 None:intergenic 25.0%
!!! ACCTTTTGCTGTTTATAAAT+TGG - chr4.4:14924944-14924963 None:intergenic 25.0%
!!! TTTGTTTTTATAGTCCTTGT+GGG + chr4.4:14924732-14924751 MS.gene08979:intron 25.0%
AAATATGTCTATGTCCCTTA+TGG + chr4.4:14925257-14925276 MS.gene08979:intron 30.0%
AAGAAGATACTGCTATTGTT+AGG + chr4.4:14923386-14923405 MS.gene08979:CDS 30.0%
AAGCAGAAAATTGAAGGATT+GGG + chr4.4:14925550-14925569 MS.gene08979:CDS 30.0%
AATATTATCAGTTCCAACAG+TGG - chr4.4:14924214-14924233 None:intergenic 30.0%
ATGATTAAGGTCTATTCTCT+TGG + chr4.4:14924833-14924852 MS.gene08979:intron 30.0%
ATGCAGAAATACTATCACAA+GGG + chr4.4:14924153-14924172 MS.gene08979:CDS 30.0%
ATGTTCTACTGAAGTTCATA+TGG + chr4.4:14924504-14924523 MS.gene08979:intron 30.0%
CAAGGACTATAAAAACAAAC+AGG - chr4.4:14924731-14924750 None:intergenic 30.0%
GATAAAGCTAGCATTTCATA+TGG - chr4.4:14924869-14924888 None:intergenic 30.0%
GATAAGCTTAGAGGTAAAAT+TGG + chr4.4:14923235-14923254 MS.gene08979:CDS 30.0%
GTAATATACTAAAAGCCACT+TGG - chr4.4:14924665-14924684 None:intergenic 30.0%
TAAAGGAAGCAGAAAATTGA+AGG + chr4.4:14925544-14925563 MS.gene08979:CDS 30.0%
TATGCAGAAATACTATCACA+AGG + chr4.4:14924152-14924171 MS.gene08979:CDS 30.0%
TGATACAGTAATAGCTGTAA+GGG + chr4.4:14923213-14923232 MS.gene08979:CDS 30.0%
TTGGATATTGATGTAGTTTG+CGG + chr4.4:14924916-14924935 MS.gene08979:intron 30.0%
TTTGGTCTAAACTGAAATCA+AGG + chr4.4:14924594-14924613 MS.gene08979:intron 30.0%
! TAAAGAGAGAAGCAATGTTT+TGG - chr4.4:14924476-14924495 None:intergenic 30.0%
! TCAGAAACATTTTGAATTGG+AGG + chr4.4:14923900-14923919 MS.gene08979:CDS 30.0%
! TTCAATTTTCTGCTTCCTTT+AGG - chr4.4:14925545-14925564 None:intergenic 30.0%
!! TTTCAGACAAAAGAAGTACT+TGG - chr4.4:14925240-14925259 None:intergenic 30.0%
!!! GTTTGTTTTTATAGTCCTTG+TGG + chr4.4:14924731-14924750 MS.gene08979:intron 30.0%
AAATCTCCATTTCTGCTTTG+AGG - chr4.4:14924133-14924152 None:intergenic 35.0%
AAGTCACTCAAATAACAACG+AGG - chr4.4:14925198-14925217 None:intergenic 35.0%
ACTGTTGAAGGAAAAAGAAG+AGG + chr4.4:14924035-14924054 MS.gene08979:CDS 35.0%
AGCCAAGTATAATGAGAGAA+TGG + chr4.4:14925493-14925512 MS.gene08979:CDS 35.0%
ATACCATGCAATCTTACTTC+AGG + chr4.4:14925322-14925341 MS.gene08979:intron 35.0%
ATCTGGATTCACACATAAGA+TGG + chr4.4:14925130-14925149 MS.gene08979:intron 35.0%
CTTGTGAAGTTAAGAGAGTA+TGG + chr4.4:14924775-14924794 MS.gene08979:intron 35.0%
GAAGCAGAAAATTGAAGGAT+TGG + chr4.4:14925549-14925568 MS.gene08979:CDS 35.0%
GGATTTAGAAGAACAAGATG+AGG + chr4.4:14923546-14923565 MS.gene08979:CDS 35.0%
GTGATACAGTAATAGCTGTA+AGG + chr4.4:14923212-14923231 MS.gene08979:CDS 35.0%
TGCCATTCTCTCATTATACT+TGG - chr4.4:14925498-14925517 None:intergenic 35.0%
TTCAAGGGAAAGTGAACTTA+CGG - chr4.4:14924384-14924403 None:intergenic 35.0%
TTCGTAGATTGATTGAGAGT+AGG + chr4.4:14923425-14923444 MS.gene08979:CDS 35.0%
TTGTCATGCATTCTCATTGT+AGG + chr4.4:14924998-14925017 MS.gene08979:intron 35.0%
TTGTTAGGAAAGATGATCGT+AGG + chr4.4:14923401-14923420 MS.gene08979:CDS 35.0%
! AGATTGTTGTTGAGGAGATT+CGG + chr4.4:14923863-14923882 MS.gene08979:CDS 35.0%
! GGATGCTAATTTTATACCTC+TGG + chr4.4:14925388-14925407 MS.gene08979:intron 35.0%
! GTAAATGTCCAAGACCATTT+TGG - chr4.4:14924542-14924561 None:intergenic 35.0%
! TGTCCCTTATGGAGATTTTT+AGG + chr4.4:14925268-14925287 MS.gene08979:intron 35.0%
! TTTGAGGATTGAGAAGGTTT+TGG - chr4.4:14924117-14924136 None:intergenic 35.0%
!! CATTCTCATTGTAGGTTGAT+AGG + chr4.4:14925006-14925025 MS.gene08979:intron 35.0%
!! GAAACCAGCTTTAGCATTTT+AGG + chr4.4:14925065-14925084 MS.gene08979:intron 35.0%
!! GATTGTTTCTACCATTGAAG+AGG + chr4.4:14923501-14923520 MS.gene08979:CDS 35.0%
!! GTATGATACTGATTCTGATG+AGG + chr4.4:14923690-14923709 MS.gene08979:CDS 35.0%
!! TTAACACTGATTTGCAATGC+AGG + chr4.4:14925447-14925466 MS.gene08979:intron 35.0%
!!! GTCTATTCTCTTGGTGTTTT+TGG + chr4.4:14924842-14924861 MS.gene08979:intron 35.0%
AAAGTGAATCGTTATTGGCC+TGG + chr4.4:14923265-14923284 MS.gene08979:CDS 40.0%
ACACTCATCCAAAATGGTCT+TGG + chr4.4:14924531-14924550 MS.gene08979:intron 40.0%
AGAACAAGATGAGGATGCTA+TGG + chr4.4:14923555-14923574 MS.gene08979:CDS 40.0%
AGATAACCGTGAGGAAGTTA+GGG + chr4.4:14923450-14923469 MS.gene08979:CDS 40.0%
AGGAAAAAGAAGAGGTTGAG+AGG + chr4.4:14924043-14924062 MS.gene08979:CDS 40.0%
ATTGTATCTCTCTCCGACTT+TGG - chr4.4:14923754-14923773 None:intergenic 40.0%
CCTATCGGATCTAATATCAC+CGG - chr4.4:14923332-14923351 None:intergenic 40.0%
CGGTGATATTAGATCCGATA+GGG + chr4.4:14923330-14923349 MS.gene08979:CDS 40.0%
CTCAATCCTCAAAGCAGAAA+TGG + chr4.4:14924124-14924143 MS.gene08979:CDS 40.0%
GAGAATGCATGACAAAACTC+TGG - chr4.4:14924993-14925012 None:intergenic 40.0%
GGAAAAAGAAGAGGTTGAGA+GGG + chr4.4:14924044-14924063 MS.gene08979:CDS 40.0%
GGGAGGATCATAGAAGAATT+CGG + chr4.4:14923470-14923489 MS.gene08979:CDS 40.0%
GGTTTGACACTCATCCAAAA+TGG + chr4.4:14924525-14924544 MS.gene08979:intron 40.0%
GTTATGCAAGTCAAGCACTT+TGG + chr4.4:14924297-14924316 MS.gene08979:CDS 40.0%
TCAAGGGAAAGTGAACTTAC+GGG - chr4.4:14924383-14924402 None:intergenic 40.0%
TCAATGAGGACACTACTGAT+TGG + chr4.4:14924352-14924371 MS.gene08979:CDS 40.0%
! AACGAGGTTAGTTAGCTACA+TGG - chr4.4:14925182-14925201 None:intergenic 40.0%
! CTTGTCCATTTTATCTTCCC+CGG - chr4.4:14924262-14924281 None:intergenic 40.0%
! TCATTATACTTGGCTCGAAG+TGG - chr4.4:14925488-14925507 None:intergenic 40.0%
! TGTTTCTACCATTGAAGAGG+AGG + chr4.4:14923504-14923523 MS.gene08979:CDS 40.0%
!! TGCTTGACTTGCATAACCTT+GGG - chr4.4:14924294-14924313 None:intergenic 40.0%
!! TTCTGCTTTGAGGATTGAGA+AGG - chr4.4:14924123-14924142 None:intergenic 40.0%
AAGAACTAAGTGGTCCCATC+TGG + chr4.4:14924329-14924348 MS.gene08979:CDS 45.0%
AAGGAGATCGAAGATGCATC+CGG + chr4.4:14923310-14923329 MS.gene08979:CDS 45.0%
ACAAGATGAGGATGCTATGG+CGG + chr4.4:14923558-14923577 MS.gene08979:CDS 45.0%
ACCAACCGGGGAAGATAAAA+TGG + chr4.4:14924254-14924273 MS.gene08979:CDS 45.0%
AGAGATTGGTAGGATCAAGC+GGG + chr4.4:14923993-14924012 MS.gene08979:CDS 45.0%
AGGATATGAAGACGACCAAG+TGG + chr4.4:14924647-14924666 MS.gene08979:intron 45.0%
AGGCAGAGGAATATGAAGCT+TGG + chr4.4:14923962-14923981 MS.gene08979:CDS 45.0%
AGTGTCCTCATTGACCAGAT+GGG - chr4.4:14924346-14924365 None:intergenic 45.0%
ATCCAAAGCAGCTTCCCTAT+CGG - chr4.4:14923347-14923366 None:intergenic 45.0%
ATCTCCTTATCAGCCCATTC+GGG - chr4.4:14923298-14923317 None:intergenic 45.0%
CAGATAACCGTGAGGAAGTT+AGG + chr4.4:14923449-14923468 MS.gene08979:CDS 45.0%
CCGGTGATATTAGATCCGAT+AGG + chr4.4:14923329-14923348 MS.gene08979:CDS 45.0%
CTCGGTCATCAGAATTAGAC+TGG - chr4.4:14924188-14924207 None:intergenic 45.0%
CTTCCTTTAGGCTTCGCTAT+AGG - chr4.4:14925533-14925552 None:intergenic 45.0%
GAGAGATTGGTAGGATCAAG+CGG + chr4.4:14923992-14924011 MS.gene08979:CDS 45.0%
GATCTCCTTATCAGCCCATT+CGG - chr4.4:14923299-14923318 None:intergenic 45.0%
GCAGTATCTTCTTCATGACG+AGG - chr4.4:14923379-14923398 None:intergenic 45.0%
GCCTGTGTTTGTTCCAAAGT+CGG + chr4.4:14923738-14923757 MS.gene08979:CDS 45.0%
GCTGCCTAAAATGCTAAAGC+TGG - chr4.4:14925072-14925091 None:intergenic 45.0%
GCTGTAAGGGATAAGCTTAG+AGG + chr4.4:14923226-14923245 MS.gene08979:CDS 45.0%
GCTTGGAAAGTGAGAGAGAT+TGG + chr4.4:14923979-14923998 MS.gene08979:CDS 45.0%
GGAAAGTGAGAGAGATTGGT+AGG + chr4.4:14923983-14924002 MS.gene08979:CDS 45.0%
GGATCATAGAAGAATTCGGC+AGG + chr4.4:14923474-14923493 MS.gene08979:CDS 45.0%
GGTCCTGAAGTAAGATTGCA+TGG - chr4.4:14925328-14925347 None:intergenic 45.0%
TAGTGTCCTCATTGACCAGA+TGG - chr4.4:14924347-14924366 None:intergenic 45.0%
TGTTGTTGAGGAGATTCGGA+AGG + chr4.4:14923867-14923886 MS.gene08979:CDS 45.0%
TTTCCTTCAACAGTGCCTCA+CGG - chr4.4:14924029-14924048 None:intergenic 45.0%
! CACTGATGATGAACTCAACG+AGG + chr4.4:14923942-14923961 MS.gene08979:CDS 45.0%
! GATTCTGATGAGGAGTACAC+TGG + chr4.4:14923700-14923719 MS.gene08979:CDS 45.0%
! TCCATTTTATCTTCCCCGGT+TGG - chr4.4:14924258-14924277 None:intergenic 45.0%
!! ACACTGATTTGCAATGCAGG+TGG + chr4.4:14925450-14925469 MS.gene08979:intron 45.0%
!! GGAGAGAAGAAGACGGATTA+AGG + chr4.4:14923579-14923598 MS.gene08979:CDS 45.0%
!! GTGCTTGACTTGCATAACCT+TGG - chr4.4:14924295-14924314 None:intergenic 45.0%
!! TCCGACTTTGGAACAAACAC+AGG - chr4.4:14923742-14923761 None:intergenic 45.0%
!! TTTCTAGGACAAGACGAGAG+TGG - chr4.4:14925349-14925368 None:intergenic 45.0%
!!! GAGAGAAGCAATGTTTTGGC+AGG - chr4.4:14924472-14924491 None:intergenic 45.0%
AAGAAGAGGTTGAGAGGGTG+AGG + chr4.4:14924049-14924068 MS.gene08979:CDS 50.0%
AGAGGAGGAAAGGAGAGAGT+GGG + chr4.4:14924080-14924099 MS.gene08979:CDS 50.0%
AGAGGAGGAAGAAGAAGAGG+AGG + chr4.4:14923657-14923676 MS.gene08979:CDS 50.0%
AGCAAGGAAGAGGAGAATGG+AGG + chr4.4:14923819-14923838 MS.gene08979:CDS 50.0%
AGGAAAGGAGAGAGTGGGAA+AGG + chr4.4:14924085-14924104 MS.gene08979:CDS 50.0%
AGGAGAGGAGAAATGAGACG+AGG + chr4.4:14923839-14923858 MS.gene08979:CDS 50.0%
ATCCGATAGGGAAGCTGCTT+TGG + chr4.4:14923342-14923361 MS.gene08979:CDS 50.0%
CTCTTGAGGAAGCAAGGAAG+AGG + chr4.4:14923809-14923828 MS.gene08979:CDS 50.0%
GAAGTTGCGTCAGAGAGATC+AGG + chr4.4:14923603-14923622 MS.gene08979:CDS 50.0%
GAGTAGGACAGATAACCGTG+AGG + chr4.4:14923441-14923460 MS.gene08979:CDS 50.0%
GATCCTCCCTAACTTCCTCA+CGG - chr4.4:14923459-14923478 None:intergenic 50.0%
GGAACATGACAGAGGAGGAA+AGG + chr4.4:14924070-14924089 MS.gene08979:CDS 50.0%
GGAAGAGGAGGAAGAAGAAG+AGG + chr4.4:14923654-14923673 MS.gene08979:CDS 50.0%
GGAAGCAAGGAAGAGGAGAA+TGG + chr4.4:14923816-14923835 MS.gene08979:CDS 50.0%
GGACAAGACAATACTGCCCA+AGG + chr4.4:14924275-14924294 MS.gene08979:CDS 50.0%
GGAGGCGAATATTGCTGATG+TGG + chr4.4:14923918-14923937 MS.gene08979:CDS 50.0%
GGAGTACACTGGAGTAGCTA+TGG + chr4.4:14923711-14923730 MS.gene08979:CDS 50.0%
GTCGCAGTGGAAGAACTAAG+TGG + chr4.4:14924319-14924338 MS.gene08979:CDS 50.0%
TAACCGTGAGGAAGTTAGGG+AGG + chr4.4:14923453-14923472 MS.gene08979:CDS 50.0%
TGATGAACTCAACGAGGCAG+AGG + chr4.4:14923948-14923967 MS.gene08979:CDS 50.0%
TGGTAGGATCAAGCGGGATA+GGG + chr4.4:14923999-14924018 MS.gene08979:CDS 50.0%
TTGGTAGGATCAAGCGGGAT+AGG + chr4.4:14923998-14924017 MS.gene08979:CDS 50.0%
! AGGCAGCATTTGCTGCATCA+CGG + chr4.4:14925085-14925104 MS.gene08979:intron 50.0%
! CTATGGCGGAGAGAAGAAGA+CGG + chr4.4:14923572-14923591 MS.gene08979:CDS 50.0%
! GACGAGGCAGATTGTTGTTG+AGG + chr4.4:14923855-14923874 MS.gene08979:CDS 50.0%
AGCTGAAGAGGAGGCTCTTG+AGG + chr4.4:14923795-14923814 MS.gene08979:CDS 55.0%
AGGAGGCTCTTGAGGAAGCA+AGG + chr4.4:14923803-14923822 MS.gene08979:CDS 55.0%
CAGAGGAGGAAAGGAGAGAG+TGG + chr4.4:14924079-14924098 MS.gene08979:CDS 55.0%
CAGTTCCAACAGTGGCAGCT+CGG - chr4.4:14924206-14924225 None:intergenic 55.0%
CCATTGAAGAGGAGGCGAAG+AGG + chr4.4:14923512-14923531 MS.gene08979:CDS 55.0%
CCTCTTCGCCTCCTCTTCAA+TGG - chr4.4:14923515-14923534 None:intergenic 55.0%
CGATTTCTCTGCACCAACCG+GGG + chr4.4:14924242-14924261 MS.gene08979:CDS 55.0%
CGCGATTTCTCTGCACCAAC+CGG + chr4.4:14924240-14924259 MS.gene08979:CDS 55.0%
GAGGGTGAGGAACATGACAG+AGG + chr4.4:14924062-14924081 MS.gene08979:CDS 55.0%
GCCTGGTAAAGCTCCCGAAT+GGG + chr4.4:14923282-14923301 MS.gene08979:CDS 55.0%
GCGATTTCTCTGCACCAACC+GGG + chr4.4:14924241-14924260 MS.gene08979:CDS 55.0%
GCGCCTATAGCGAAGCCTAA+AGG + chr4.4:14925527-14925546 MS.gene08979:CDS 55.0%
GGAAGAGGAGAATGGAGGAG+AGG + chr4.4:14923824-14923843 MS.gene08979:CDS 55.0%
GGAGGAAGAAGAAGAGGAGG+AGG + chr4.4:14923660-14923679 MS.gene08979:CDS 55.0%
GGTGAGGAACATGACAGAGG+AGG + chr4.4:14924065-14924084 MS.gene08979:CDS 55.0%
GTCAAGCACTTTGGTCGCAG+TGG + chr4.4:14924306-14924325 MS.gene08979:CDS 55.0%
GTGGTCCCATCTGGTCAATG+AGG + chr4.4:14924338-14924357 MS.gene08979:CDS 55.0%
GTTGCGTCAGAGAGATCAGG+AGG + chr4.4:14923606-14923625 MS.gene08979:CDS 55.0%
TAGGATCAAGCGGGATAGGG+AGG + chr4.4:14924002-14924021 MS.gene08979:CDS 55.0%
TCAGGAAGAGGAGGAGGAAG+AGG + chr4.4:14923639-14923658 MS.gene08979:CDS 55.0%
TCTTCCTCCTCCTCTTCCTG+AGG - chr4.4:14923640-14923659 None:intergenic 55.0%
TGAGCGTCTCGAAGCTGAAG+AGG + chr4.4:14923783-14923802 MS.gene08979:CDS 55.0%
!! AGCTCCCGAATGGGCTGATA+AGG + chr4.4:14923291-14923310 MS.gene08979:CDS 55.0%
AGCGCTTCCTCAGGAAGAGG+AGG + chr4.4:14923630-14923649 MS.gene08979:CDS 60.0%
AGGAGGCGAAGAGGCAGGAA+GGG + chr4.4:14923521-14923540 MS.gene08979:CDS 60.0%
GATGACCGAGCTGCCACTGT+TGG + chr4.4:14924198-14924217 MS.gene08979:CDS 60.0%
GCCCATTCGGGAGCTTTACC+AGG - chr4.4:14923286-14923305 None:intergenic 60.0%
GCGTCTCGAAGCTGAAGAGG+AGG + chr4.4:14923786-14923805 MS.gene08979:CDS 60.0%
GCTTCCTCAGGAAGAGGAGG+AGG + chr4.4:14923633-14923652 MS.gene08979:CDS 60.0%
GGAAGAGGAGGAGGAAGAGG+AGG + chr4.4:14923642-14923661 MS.gene08979:CDS 60.0%
GGCCTGGTAAAGCTCCCGAA+TGG + chr4.4:14923281-14923300 MS.gene08979:CDS 60.0%
TGAAGAGGAGGCGAAGAGGC+AGG + chr4.4:14923516-14923535 MS.gene08979:CDS 60.0%
!! GGAAGCGCTTCCTCAGGAAG+AGG + chr4.4:14923627-14923646 MS.gene08979:CDS 60.0%
!! GGACCGTGAGGCACTGTTGA+AGG + chr4.4:14924023-14924042 MS.gene08979:CDS 60.0%
!! TCAGGAGGAAGCGCTTCCTC+AGG + chr4.4:14923621-14923640 MS.gene08979:CDS 60.0%
GAGGAGGCGAAGAGGCAGGA+AGG + chr4.4:14923520-14923539 MS.gene08979:CDS 65.0%
GGCGAAGAGGCAGGAAGGGT+TGG + chr4.4:14923525-14923544 MS.gene08979:CDS 65.0%
GCGGGATAGGGAGGACCGTG+AGG + chr4.4:14924011-14924030 MS.gene08979:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 14923190 14925583 14923190 ID=MS.gene08979
chr4.4 mRNA 14923190 14925583 14923190 ID=MS.gene08979.t1;Parent=MS.gene08979
chr4.4 exon 14923190 14924382 14923190 ID=MS.gene08979.t1.exon1;Parent=MS.gene08979.t1
chr4.4 CDS 14923190 14924382 14923190 ID=cds.MS.gene08979.t1;Parent=MS.gene08979.t1
chr4.4 exon 14925469 14925583 14925469 ID=MS.gene08979.t1.exon2;Parent=MS.gene08979.t1
chr4.4 CDS 14925469 14925583 14925469 ID=cds.MS.gene08979.t1;Parent=MS.gene08979.t1
Gene Sequence

>MS.gene08979

ATGTCTGTAACAGCGGGTGTCAGTGATACAGTAATAGCTGTAAGGGATAAGCTTAGAGGTAAAATTGGACAAACAAAAGTGAATCGTTATTGGCCTGGTAAAGCTCCCGAATGGGCTGATAAGGAGATCGAAGATGCATCCGGTGATATTAGATCCGATAGGGAAGCTGCTTTGGATAAAGCTTTTCCTCGTCATGAAGAAGATACTGCTATTGTTAGGAAAGATGATCGTAGGCTTCGTAGATTGATTGAGAGTAGGACAGATAACCGTGAGGAAGTTAGGGAGGATCATAGAAGAATTCGGCAGGCTGAGATTGTTTCTACCATTGAAGAGGAGGCGAAGAGGCAGGAAGGGTTGGATTTAGAAGAACAAGATGAGGATGCTATGGCGGAGAGAAGAAGACGGATTAAGGAGAAGTTGCGTCAGAGAGATCAGGAGGAAGCGCTTCCTCAGGAAGAGGAGGAGGAAGAGGAGGAAGAAGAAGAGGAGGAGGAGTCTGAGTATGATACTGATTCTGATGAGGAGTACACTGGAGTAGCTATGGTGAAGCCTGTGTTTGTTCCAAAGTCGGAGAGAGATACAATTGCTGAGCGTGAGCGTCTCGAAGCTGAAGAGGAGGCTCTTGAGGAAGCAAGGAAGAGGAGAATGGAGGAGAGGAGAAATGAGACGAGGCAGATTGTTGTTGAGGAGATTCGGAAGGATGAAGAAATTCAGAAACATTTTGAATTGGAGGCGAATATTGCTGATGTGGACACTGATGATGAACTCAACGAGGCAGAGGAATATGAAGCTTGGAAAGTGAGAGAGATTGGTAGGATCAAGCGGGATAGGGAGGACCGTGAGGCACTGTTGAAGGAAAAAGAAGAGGTTGAGAGGGTGAGGAACATGACAGAGGAGGAAAGGAGAGAGTGGGAAAGGAAGAATCCAAAACCTTCTCAATCCTCAAAGCAGAAATGGAGATTTATGCAGAAATACTATCACAAGGGTGCTTTCTTCCAGTCTAATTCTGATGACCGAGCTGCCACTGTTGGAACTGATAATATTTTCACACGCGATTTCTCTGCACCAACCGGGGAAGATAAAATGGACAAGACAATACTGCCCAAGGTTATGCAAGTCAAGCACTTTGGTCGCAGTGGAAGAACTAAGTGGTCCCATCTGGTCAATGAGGACACTACTGATTGGAACAACCCGTAAGTTCACTTTCCCTTGAATATCTTTCAATAATAGCGGTAGATTCCATTTTCTATTAGTTGATATTATTGTTTTGCTCTTTGATCCTGCCAAAACATTGCTTCTCTCTTTACAATTTACATGTTCTACTGAAGTTCATATGGTTTGACACTCATCCAAAATGGTCTTGGACATTTACTTTTTTACATTCTTGATTTTATATTGAGAAGCTTTGGTCTAAACTGAAATCAAGGAATTGTTAATTATAATAAGATGCATTGATAAGGATATGAAGACGACCAAGTGGCTTTTAGTATATTACATGCCTTTATACTGCATTTTGTTTGAAAGATGTCTCCTATGTTCCTGTTTGTTTTTATAGTCCTTGTGGGTTTTATTTGTTTTTCATTTGCTTGTGAAGTTAAGAGAGTATGGCACAATAGTTAAAAGTCATGATTCTAATTAATATAATGATTAAGGTCTATTCTCTTGGTGTTTTTGGACCATATGAAATGCTAGCTTTATCATCAATGAAACCTTTTATCTGTTTGTTTTGGATATTGATGTAGTTTGCGGAACCAATTTATAAACAGCAAAAGGTTTTTTTTACTTGTTTTTAGTCTTTCACCAGAGTTTTGTCATGCATTCTCATTGTAGGTTGATAGGTTTGCTGTCATGTCAGTATGAATGATAATCATTATTGAAACCAGCTTTAGCATTTTAGGCAGCATTTGCTGCATCACGGCATATGTTTATTTTTAAATGAAATCTGGATTCACACATAAGATGGATTATAGTTCGAGATAGTTCTATGATCCATGTAGCTAACTAACCTCGTTGTTATTTGAGTGACTTTCTGAAGTCTTTTATGCTTCCAAGTACTTCTTTTGTCTGAAATATGTCTATGTCCCTTATGGAGATTTTTAGGATTTGTTAATGCATTGCTGAATTCATTTTGTATACCATGCAATCTTACTTCAGGACCACTCTCGTCTTGTCCTAGAAATTAAAAAAGGGGTTTTCTAGGATGCTAATTTTATACCTCTGGATTATTGATTTATTTTTATGCTCTAGTGTTCTTTCTTTAACACTGATTTGCAATGCAGGTGGACTTACAATGATCCACTTCGAGCCAAGTATAATGAGAGAATGGCAGCAATGAACGCGCCTATAGCGAAGCCTAAAGGAAGCAGAAAATTGAAGGATTGGGAATCTCGATGA

Protein sequence

>MS.gene08979.t1

MSVTAGVSDTVIAVRDKLRGKIGQTKVNRYWPGKAPEWADKEIEDASGDIRSDREAALDKAFPRHEEDTAIVRKDDRRLRRLIESRTDNREEVREDHRRIRQAEIVSTIEEEAKRQEGLDLEEQDEDAMAERRRRIKEKLRQRDQEEALPQEEEEEEEEEEEEEESEYDTDSDEEYTGVAMVKPVFVPKSERDTIAERERLEAEEEALEEARKRRMEERRNETRQIVVEEIRKDEEIQKHFELEANIADVDTDDELNEAEEYEAWKVREIGRIKRDREDREALLKEKEEVERVRNMTEEERREWERKNPKPSQSSKQKWRFMQKYYHKGAFFQSNSDDRAATVGTDNIFTRDFSAPTGEDKMDKTILPKVMQVKHFGRSGRTKWSHLVNEDTTDWNNPWTYNDPLRAKYNERMAAMNAPIAKPKGSRKLKDWESR