Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08979.t1 | XP_003629615.1 | 97 | 436 | 12 | 1 | 1 | 435 | 1 | 436 | 2.30E-154 | 555.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08979.t1 | C0HKD8 | 44.9 | 136 | 64 | 2 | 297 | 430 | 311 | 437 | 1.0e-22 | 109.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08979.t1 | G7LH32 | 97.0 | 436 | 12 | 1 | 1 | 435 | 1 | 436 | 1.6e-154 | 555.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050689 | MS.gene08979 | 0.807123 | 5.89E-50 | -1.69E-46 |
MS.gene052519 | MS.gene08979 | 0.818957 | 1.49E-52 | -1.69E-46 |
MS.gene052863 | MS.gene08979 | 0.800579 | 1.35E-48 | -1.69E-46 |
MS.gene054651 | MS.gene08979 | 0.812023 | 5.22E-51 | -1.69E-46 |
MS.gene055464 | MS.gene08979 | 0.807848 | 4.14E-50 | -1.69E-46 |
MS.gene057102 | MS.gene08979 | 0.8001 | 1.69E-48 | -1.69E-46 |
MS.gene057208 | MS.gene08979 | 0.820011 | 8.59E-53 | -1.69E-46 |
MS.gene058008 | MS.gene08979 | 0.823325 | 1.47E-53 | -1.69E-46 |
MS.gene058009 | MS.gene08979 | 0.825301 | 5.05E-54 | -1.69E-46 |
MS.gene058781 | MS.gene08979 | 0.81922 | 1.30E-52 | -1.69E-46 |
MS.gene058783 | MS.gene08979 | 0.857409 | 1.66E-62 | -1.69E-46 |
MS.gene059842 | MS.gene08979 | 0.809785 | 1.59E-50 | -1.69E-46 |
MS.gene060935 | MS.gene08979 | 0.810015 | 1.42E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08979.t1 | MTR_8g083140 | 97.936 | 436 | 8 | 1 | 1 | 435 | 1 | 436 | 0.0 | 845 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08979.t1 | AT5G17900 | 67.882 | 439 | 132 | 7 | 1 | 434 | 1 | 435 | 7.22e-175 | 496 |
MS.gene08979.t1 | AT4G08580 | 69.248 | 439 | 126 | 7 | 1 | 434 | 1 | 435 | 1.22e-173 | 493 |
MS.gene08979.t1 | AT4G08580 | 69.248 | 439 | 126 | 7 | 1 | 434 | 1 | 435 | 1.22e-173 | 493 |
Find 128 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGATAACCGTGAGGAAGTT+AGG | 0.251826 | 4.4:+14923449 | MS.gene08979:CDS |
GATAAGCTTAGAGGTAAAAT+TGG | 0.289985 | 4.4:+14923235 | MS.gene08979:CDS |
AAACAAAAGTGAATCGTTAT+TGG | 0.302600 | 4.4:+14923260 | MS.gene08979:CDS |
GGAGAGAAGAAGACGGATTA+AGG | 0.319392 | 4.4:+14923579 | MS.gene08979:CDS |
TTTGAGGATTGAGAAGGTTT+TGG | 0.325987 | 4.4:-14924114 | None:intergenic |
CTTCCTTTAGGCTTCGCTAT+AGG | 0.327439 | 4.4:-14925530 | None:intergenic |
CGCGATTTCTCTGCACCAAC+CGG | 0.331303 | 4.4:+14924240 | MS.gene08979:CDS |
GCTTGGAAAGTGAGAGAGAT+TGG | 0.332784 | 4.4:+14923979 | MS.gene08979:CDS |
ATCCGATAGGGAAGCTGCTT+TGG | 0.345626 | 4.4:+14923342 | MS.gene08979:CDS |
ATTGTATCTCTCTCCGACTT+TGG | 0.346170 | 4.4:-14923751 | None:intergenic |
AAATCTCCATTTCTGCTTTG+AGG | 0.348536 | 4.4:-14924130 | None:intergenic |
ACCAACCGGGGAAGATAAAA+TGG | 0.352546 | 4.4:+14924254 | MS.gene08979:CDS |
TGCCATTCTCTCATTATACT+TGG | 0.364123 | 4.4:-14925495 | None:intergenic |
GAAGCAGAAAATTGAAGGAT+TGG | 0.391898 | 4.4:+14925549 | MS.gene08979:CDS |
CTCAATCCTCAAAGCAGAAA+TGG | 0.400415 | 4.4:+14924124 | MS.gene08979:CDS |
ATCTCCTTATCAGCCCATTC+GGG | 0.406019 | 4.4:-14923295 | None:intergenic |
AGCTCCCGAATGGGCTGATA+AGG | 0.412252 | 4.4:+14923291 | MS.gene08979:CDS |
GGAGGAAGAAGAAGAGGAGG+AGG | 0.418431 | 4.4:+14923660 | MS.gene08979:CDS |
GATCTCCTTATCAGCCCATT+CGG | 0.419914 | 4.4:-14923296 | None:intergenic |
AAGAAGATACTGCTATTGTT+AGG | 0.422202 | 4.4:+14923386 | MS.gene08979:CDS |
TGCTTGACTTGCATAACCTT+GGG | 0.433125 | 4.4:-14924291 | None:intergenic |
GGAAGCAAGGAAGAGGAGAA+TGG | 0.439115 | 4.4:+14923816 | MS.gene08979:CDS |
CCTCTTCGCCTCCTCTTCAA+TGG | 0.439943 | 4.4:-14923512 | None:intergenic |
AGATTGTTGTTGAGGAGATT+CGG | 0.443421 | 4.4:+14923863 | MS.gene08979:CDS |
GGAAGAGGAGGAAGAAGAAG+AGG | 0.449096 | 4.4:+14923654 | MS.gene08979:CDS |
AAGAAGAGGTTGAGAGGGTG+AGG | 0.449581 | 4.4:+14924049 | MS.gene08979:CDS |
CAGAGGAGGAAAGGAGAGAG+TGG | 0.451754 | 4.4:+14924079 | MS.gene08979:CDS |
AAGCAGAAAATTGAAGGATT+GGG | 0.452417 | 4.4:+14925550 | MS.gene08979:CDS |
GCCCATTCGGGAGCTTTACC+AGG | 0.457240 | 4.4:-14923283 | None:intergenic |
TTGGTAGGATCAAGCGGGAT+AGG | 0.457251 | 4.4:+14923998 | MS.gene08979:CDS |
GGCGAAGAGGCAGGAAGGGT+TGG | 0.460524 | 4.4:+14923525 | MS.gene08979:CDS |
GGGAGGATCATAGAAGAATT+CGG | 0.461187 | 4.4:+14923470 | MS.gene08979:CDS |
GTGATACAGTAATAGCTGTA+AGG | 0.463519 | 4.4:+14923212 | MS.gene08979:CDS |
AGGAAAGGAGAGAGTGGGAA+AGG | 0.467563 | 4.4:+14924085 | MS.gene08979:CDS |
TCAGGAAGAGGAGGAGGAAG+AGG | 0.472397 | 4.4:+14923639 | MS.gene08979:CDS |
AGAGGAGGAAGAAGAAGAGG+AGG | 0.474008 | 4.4:+14923657 | MS.gene08979:CDS |
GCCTGGTAAAGCTCCCGAAT+GGG | 0.475873 | 4.4:+14923282 | MS.gene08979:CDS |
AGCTGAAGAGGAGGCTCTTG+AGG | 0.477467 | 4.4:+14923795 | MS.gene08979:CDS |
GTGCTTGACTTGCATAACCT+TGG | 0.482408 | 4.4:-14924292 | None:intergenic |
TGGTAGGATCAAGCGGGATA+GGG | 0.489340 | 4.4:+14923999 | MS.gene08979:CDS |
CTCGGTCATCAGAATTAGAC+TGG | 0.494391 | 4.4:-14924185 | None:intergenic |
GAAGTTGCGTCAGAGAGATC+AGG | 0.497425 | 4.4:+14923603 | MS.gene08979:CDS |
GGACCGTGAGGCACTGTTGA+AGG | 0.497537 | 4.4:+14924023 | MS.gene08979:CDS |
AGATAACCGTGAGGAAGTTA+GGG | 0.501653 | 4.4:+14923450 | MS.gene08979:CDS |
AAGAACTAAGTGGTCCCATC+TGG | 0.502200 | 4.4:+14924329 | MS.gene08979:CDS |
TAAAGGAAGCAGAAAATTGA+AGG | 0.508497 | 4.4:+14925544 | MS.gene08979:CDS |
TGAAGAGGAGGCGAAGAGGC+AGG | 0.509564 | 4.4:+14923516 | MS.gene08979:CDS |
AAAGTGAATCGTTATTGGCC+TGG | 0.515029 | 4.4:+14923265 | MS.gene08979:CDS |
GCGCCTATAGCGAAGCCTAA+AGG | 0.515281 | 4.4:+14925527 | MS.gene08979:CDS |
AAGAACAATGTCTGTAACAG+CGG | 0.516762 | 4.4:+14923183 | None:intergenic |
TCAGGAGGAAGCGCTTCCTC+AGG | 0.518120 | 4.4:+14923621 | MS.gene08979:CDS |
CTCTTGAGGAAGCAAGGAAG+AGG | 0.518804 | 4.4:+14923809 | MS.gene08979:CDS |
GATGACCGAGCTGCCACTGT+TGG | 0.522346 | 4.4:+14924198 | MS.gene08979:CDS |
GCTGTAAGGGATAAGCTTAG+AGG | 0.522415 | 4.4:+14923226 | MS.gene08979:CDS |
GCCTGTGTTTGTTCCAAAGT+CGG | 0.523438 | 4.4:+14923738 | MS.gene08979:CDS |
AGAGGAGGAAAGGAGAGAGT+GGG | 0.529175 | 4.4:+14924080 | MS.gene08979:CDS |
GGAAGAGGAGAATGGAGGAG+AGG | 0.532365 | 4.4:+14923824 | MS.gene08979:CDS |
GACGAGGCAGATTGTTGTTG+AGG | 0.535442 | 4.4:+14923855 | MS.gene08979:CDS |
GAGGAGGCGAAGAGGCAGGA+AGG | 0.535811 | 4.4:+14923520 | MS.gene08979:CDS |
GGCCTGGTAAAGCTCCCGAA+TGG | 0.539602 | 4.4:+14923281 | MS.gene08979:CDS |
AAGGAGATCGAAGATGCATC+CGG | 0.541473 | 4.4:+14923310 | MS.gene08979:CDS |
ATCCAAAGCAGCTTCCCTAT+CGG | 0.542865 | 4.4:-14923344 | None:intergenic |
TTGTTAGGAAAGATGATCGT+AGG | 0.542956 | 4.4:+14923401 | MS.gene08979:CDS |
CGGTGATATTAGATCCGATA+GGG | 0.543095 | 4.4:+14923330 | MS.gene08979:CDS |
GCGATTTCTCTGCACCAACC+GGG | 0.543936 | 4.4:+14924241 | MS.gene08979:CDS |
TCAATGAGGACACTACTGAT+TGG | 0.545194 | 4.4:+14924352 | MS.gene08979:CDS |
AGGCAGAGGAATATGAAGCT+TGG | 0.545681 | 4.4:+14923962 | MS.gene08979:CDS |
AGGAGGCTCTTGAGGAAGCA+AGG | 0.551309 | 4.4:+14923803 | MS.gene08979:CDS |
TGATACAGTAATAGCTGTAA+GGG | 0.551558 | 4.4:+14923213 | MS.gene08979:CDS |
AGCAAGGAAGAGGAGAATGG+AGG | 0.552786 | 4.4:+14923819 | MS.gene08979:CDS |
TGATGAACTCAACGAGGCAG+AGG | 0.554539 | 4.4:+14923948 | MS.gene08979:CDS |
GGAACATGACAGAGGAGGAA+AGG | 0.554822 | 4.4:+14924070 | MS.gene08979:CDS |
TTCTGCTTTGAGGATTGAGA+AGG | 0.556899 | 4.4:-14924120 | None:intergenic |
TGTTGTTGAGGAGATTCGGA+AGG | 0.557175 | 4.4:+14923867 | MS.gene08979:CDS |
AGCCAAGTATAATGAGAGAA+TGG | 0.558111 | 4.4:+14925493 | MS.gene08979:CDS |
TCCGACTTTGGAACAAACAC+AGG | 0.558554 | 4.4:-14923739 | None:intergenic |
TAGTGTCCTCATTGACCAGA+TGG | 0.558983 | 4.4:-14924344 | None:intergenic |
GTTATGCAAGTCAAGCACTT+TGG | 0.559100 | 4.4:+14924297 | MS.gene08979:CDS |
AGAACAAGATGAGGATGCTA+TGG | 0.559867 | 4.4:+14923555 | MS.gene08979:CDS |
TTTCCTTCAACAGTGCCTCA+CGG | 0.561106 | 4.4:-14924026 | None:intergenic |
AGGAGGCGAAGAGGCAGGAA+GGG | 0.561535 | 4.4:+14923521 | MS.gene08979:CDS |
CAGTTCCAACAGTGGCAGCT+CGG | 0.562006 | 4.4:-14924203 | None:intergenic |
GCTTCCTCAGGAAGAGGAGG+AGG | 0.562101 | 4.4:+14923633 | MS.gene08979:CDS |
GGATCATAGAAGAATTCGGC+AGG | 0.567431 | 4.4:+14923474 | MS.gene08979:CDS |
TGAGCGTCTCGAAGCTGAAG+AGG | 0.568841 | 4.4:+14923783 | MS.gene08979:CDS |
GGAGTACACTGGAGTAGCTA+TGG | 0.568901 | 4.4:+14923711 | MS.gene08979:CDS |
GGAAAGTGAGAGAGATTGGT+AGG | 0.569136 | 4.4:+14923983 | MS.gene08979:CDS |
TGTTTCTACCATTGAAGAGG+AGG | 0.573119 | 4.4:+14923504 | MS.gene08979:CDS |
GGAAGCGCTTCCTCAGGAAG+AGG | 0.574937 | 4.4:+14923627 | MS.gene08979:CDS |
GTCAAGCACTTTGGTCGCAG+TGG | 0.576557 | 4.4:+14924306 | MS.gene08979:CDS |
GGAAGAGGAGGAGGAAGAGG+AGG | 0.582995 | 4.4:+14923642 | MS.gene08979:CDS |
TTCGTAGATTGATTGAGAGT+AGG | 0.587666 | 4.4:+14923425 | MS.gene08979:CDS |
GGATTTAGAAGAACAAGATG+AGG | 0.588247 | 4.4:+14923546 | MS.gene08979:CDS |
GATTGTTTCTACCATTGAAG+AGG | 0.588252 | 4.4:+14923501 | MS.gene08979:CDS |
CCTATCGGATCTAATATCAC+CGG | 0.588778 | 4.4:-14923329 | None:intergenic |
AGAACAATGTCTGTAACAGC+GGG | 0.592553 | 4.4:+14923184 | None:intergenic |
TCATTATACTTGGCTCGAAG+TGG | 0.594495 | 4.4:-14925485 | None:intergenic |
TAGGATCAAGCGGGATAGGG+AGG | 0.598493 | 4.4:+14924002 | MS.gene08979:CDS |
TCTTCCTCCTCCTCTTCCTG+AGG | 0.605487 | 4.4:-14923637 | None:intergenic |
AGAGATTGGTAGGATCAAGC+GGG | 0.617603 | 4.4:+14923993 | MS.gene08979:CDS |
ACAAGATGAGGATGCTATGG+CGG | 0.622020 | 4.4:+14923558 | MS.gene08979:CDS |
AGCGCTTCCTCAGGAAGAGG+AGG | 0.622259 | 4.4:+14923630 | MS.gene08979:CDS |
GAGAGATTGGTAGGATCAAG+CGG | 0.624400 | 4.4:+14923992 | MS.gene08979:CDS |
GATTCTGATGAGGAGTACAC+TGG | 0.625099 | 4.4:+14923700 | MS.gene08979:CDS |
GGACAAGACAATACTGCCCA+AGG | 0.625247 | 4.4:+14924275 | MS.gene08979:CDS |
CGATTTCTCTGCACCAACCG+GGG | 0.628439 | 4.4:+14924242 | MS.gene08979:CDS |
GTTGCGTCAGAGAGATCAGG+AGG | 0.629878 | 4.4:+14923606 | MS.gene08979:CDS |
AGTGTCCTCATTGACCAGAT+GGG | 0.631636 | 4.4:-14924343 | None:intergenic |
AATATTATCAGTTCCAACAG+TGG | 0.632023 | 4.4:-14924211 | None:intergenic |
CCATTGAAGAGGAGGCGAAG+AGG | 0.634604 | 4.4:+14923512 | MS.gene08979:CDS |
GTGGTCCCATCTGGTCAATG+AGG | 0.637794 | 4.4:+14924338 | MS.gene08979:CDS |
GGAGGCGAATATTGCTGATG+TGG | 0.645251 | 4.4:+14923918 | MS.gene08979:CDS |
GCGTCTCGAAGCTGAAGAGG+AGG | 0.648995 | 4.4:+14923786 | MS.gene08979:CDS |
GGTGAGGAACATGACAGAGG+AGG | 0.656523 | 4.4:+14924065 | MS.gene08979:CDS |
GATCCTCCCTAACTTCCTCA+CGG | 0.662585 | 4.4:-14923456 | None:intergenic |
GCGGGATAGGGAGGACCGTG+AGG | 0.664182 | 4.4:+14924011 | MS.gene08979:CDS |
CCGGTGATATTAGATCCGAT+AGG | 0.665741 | 4.4:+14923329 | MS.gene08979:CDS |
TAACCGTGAGGAAGTTAGGG+AGG | 0.675353 | 4.4:+14923453 | MS.gene08979:CDS |
CTATGGCGGAGAGAAGAAGA+CGG | 0.676104 | 4.4:+14923572 | MS.gene08979:CDS |
GCAGTATCTTCTTCATGACG+AGG | 0.684698 | 4.4:-14923376 | None:intergenic |
GTCGCAGTGGAAGAACTAAG+TGG | 0.690347 | 4.4:+14924319 | MS.gene08979:CDS |
GTATGATACTGATTCTGATG+AGG | 0.693722 | 4.4:+14923690 | MS.gene08979:CDS |
GAGGGTGAGGAACATGACAG+AGG | 0.694024 | 4.4:+14924062 | MS.gene08979:CDS |
TATGCAGAAATACTATCACA+AGG | 0.695360 | 4.4:+14924152 | MS.gene08979:CDS |
CACTGATGATGAACTCAACG+AGG | 0.706626 | 4.4:+14923942 | MS.gene08979:CDS |
ATGCAGAAATACTATCACAA+GGG | 0.716221 | 4.4:+14924153 | MS.gene08979:CDS |
AGGAGAGGAGAAATGAGACG+AGG | 0.721838 | 4.4:+14923839 | MS.gene08979:CDS |
GAGTAGGACAGATAACCGTG+AGG | 0.734497 | 4.4:+14923441 | MS.gene08979:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCTAATTAATATAATGATTA+AGG | + | chr4.4:14924820-14924839 | MS.gene08979:intron | 10.0% |
!! | TAATATCAACTAATAGAAAA+TGG | - | chr4.4:14924432-14924451 | None:intergenic | 15.0% |
!! | TATTATTGAAAGATATTCAA+GGG | - | chr4.4:14924399-14924418 | None:intergenic | 15.0% |
!!! | GTTTATTTTTAAATGAAATC+TGG | + | chr4.4:14925113-14925132 | MS.gene08979:intron | 15.0% |
!! | AAAATAAATCAATAATCCAG+AGG | - | chr4.4:14925407-14925426 | None:intergenic | 20.0% |
!! | CTATTATTGAAAGATATTCA+AGG | - | chr4.4:14924400-14924419 | None:intergenic | 20.0% |
!! | TGAATATCTTTCAATAATAG+CGG | + | chr4.4:14924400-14924419 | MS.gene08979:intron | 20.0% |
!! | TTGTCCTAGAAATTAAAAAA+GGG | + | chr4.4:14925357-14925376 | MS.gene08979:intron | 20.0% |
!!! | AATTCAGAAACATTTTGAAT+TGG | + | chr4.4:14923897-14923916 | MS.gene08979:CDS | 20.0% |
!!! | TATAATAAGATGCATTGATA+AGG | + | chr4.4:14924627-14924646 | MS.gene08979:intron | 20.0% |
! | AAAAACAAATAAAACCCACA+AGG | - | chr4.4:14924749-14924768 | None:intergenic | 25.0% |
! | AAACAAAAGTGAATCGTTAT+TGG | + | chr4.4:14923260-14923279 | MS.gene08979:CDS | 25.0% |
! | AAATCCTAAAAATCTCCATA+AGG | - | chr4.4:14925275-14925294 | None:intergenic | 25.0% |
! | AATCCTAAAAATCTCCATAA+GGG | - | chr4.4:14925274-14925293 | None:intergenic | 25.0% |
! | ACCAATTTATAAACAGCAAA+AGG | + | chr4.4:14924940-14924959 | MS.gene08979:intron | 25.0% |
! | ATAAAAACAAACAGGAACAT+AGG | - | chr4.4:14924723-14924742 | None:intergenic | 25.0% |
! | ATCCAAAACAAACAGATAAA+AGG | - | chr4.4:14924902-14924921 | None:intergenic | 25.0% |
! | CTTGTCCTAGAAATTAAAAA+AGG | + | chr4.4:14925356-14925375 | MS.gene08979:intron | 25.0% |
! | TCAAACAAAATGCAGTATAA+AGG | - | chr4.4:14924691-14924710 | None:intergenic | 25.0% |
! | TGTCCTAGAAATTAAAAAAG+GGG | + | chr4.4:14925358-14925377 | MS.gene08979:intron | 25.0% |
!! | AACCTTTTATCTGTTTGTTT+TGG | + | chr4.4:14924897-14924916 | MS.gene08979:intron | 25.0% |
!! | AATTAAAAAAGGGGTTTTCT+AGG | + | chr4.4:14925367-14925386 | MS.gene08979:intron | 25.0% |
!! | GATTTTATATTGAGAAGCTT+TGG | + | chr4.4:14924576-14924595 | MS.gene08979:intron | 25.0% |
!!! | AAACCCCTTTTTTAATTTCT+AGG | - | chr4.4:14925364-14925383 | None:intergenic | 25.0% |
!!! | ACCTTTTGCTGTTTATAAAT+TGG | - | chr4.4:14924944-14924963 | None:intergenic | 25.0% |
!!! | TTTGTTTTTATAGTCCTTGT+GGG | + | chr4.4:14924732-14924751 | MS.gene08979:intron | 25.0% |
AAATATGTCTATGTCCCTTA+TGG | + | chr4.4:14925257-14925276 | MS.gene08979:intron | 30.0% | |
AAGAAGATACTGCTATTGTT+AGG | + | chr4.4:14923386-14923405 | MS.gene08979:CDS | 30.0% | |
AAGCAGAAAATTGAAGGATT+GGG | + | chr4.4:14925550-14925569 | MS.gene08979:CDS | 30.0% | |
AATATTATCAGTTCCAACAG+TGG | - | chr4.4:14924214-14924233 | None:intergenic | 30.0% | |
ATGATTAAGGTCTATTCTCT+TGG | + | chr4.4:14924833-14924852 | MS.gene08979:intron | 30.0% | |
ATGCAGAAATACTATCACAA+GGG | + | chr4.4:14924153-14924172 | MS.gene08979:CDS | 30.0% | |
ATGTTCTACTGAAGTTCATA+TGG | + | chr4.4:14924504-14924523 | MS.gene08979:intron | 30.0% | |
CAAGGACTATAAAAACAAAC+AGG | - | chr4.4:14924731-14924750 | None:intergenic | 30.0% | |
GATAAAGCTAGCATTTCATA+TGG | - | chr4.4:14924869-14924888 | None:intergenic | 30.0% | |
GATAAGCTTAGAGGTAAAAT+TGG | + | chr4.4:14923235-14923254 | MS.gene08979:CDS | 30.0% | |
GTAATATACTAAAAGCCACT+TGG | - | chr4.4:14924665-14924684 | None:intergenic | 30.0% | |
TAAAGGAAGCAGAAAATTGA+AGG | + | chr4.4:14925544-14925563 | MS.gene08979:CDS | 30.0% | |
TATGCAGAAATACTATCACA+AGG | + | chr4.4:14924152-14924171 | MS.gene08979:CDS | 30.0% | |
TGATACAGTAATAGCTGTAA+GGG | + | chr4.4:14923213-14923232 | MS.gene08979:CDS | 30.0% | |
TTGGATATTGATGTAGTTTG+CGG | + | chr4.4:14924916-14924935 | MS.gene08979:intron | 30.0% | |
TTTGGTCTAAACTGAAATCA+AGG | + | chr4.4:14924594-14924613 | MS.gene08979:intron | 30.0% | |
! | TAAAGAGAGAAGCAATGTTT+TGG | - | chr4.4:14924476-14924495 | None:intergenic | 30.0% |
! | TCAGAAACATTTTGAATTGG+AGG | + | chr4.4:14923900-14923919 | MS.gene08979:CDS | 30.0% |
! | TTCAATTTTCTGCTTCCTTT+AGG | - | chr4.4:14925545-14925564 | None:intergenic | 30.0% |
!! | TTTCAGACAAAAGAAGTACT+TGG | - | chr4.4:14925240-14925259 | None:intergenic | 30.0% |
!!! | GTTTGTTTTTATAGTCCTTG+TGG | + | chr4.4:14924731-14924750 | MS.gene08979:intron | 30.0% |
AAATCTCCATTTCTGCTTTG+AGG | - | chr4.4:14924133-14924152 | None:intergenic | 35.0% | |
AAGTCACTCAAATAACAACG+AGG | - | chr4.4:14925198-14925217 | None:intergenic | 35.0% | |
ACTGTTGAAGGAAAAAGAAG+AGG | + | chr4.4:14924035-14924054 | MS.gene08979:CDS | 35.0% | |
AGCCAAGTATAATGAGAGAA+TGG | + | chr4.4:14925493-14925512 | MS.gene08979:CDS | 35.0% | |
ATACCATGCAATCTTACTTC+AGG | + | chr4.4:14925322-14925341 | MS.gene08979:intron | 35.0% | |
ATCTGGATTCACACATAAGA+TGG | + | chr4.4:14925130-14925149 | MS.gene08979:intron | 35.0% | |
CTTGTGAAGTTAAGAGAGTA+TGG | + | chr4.4:14924775-14924794 | MS.gene08979:intron | 35.0% | |
GAAGCAGAAAATTGAAGGAT+TGG | + | chr4.4:14925549-14925568 | MS.gene08979:CDS | 35.0% | |
GGATTTAGAAGAACAAGATG+AGG | + | chr4.4:14923546-14923565 | MS.gene08979:CDS | 35.0% | |
GTGATACAGTAATAGCTGTA+AGG | + | chr4.4:14923212-14923231 | MS.gene08979:CDS | 35.0% | |
TGCCATTCTCTCATTATACT+TGG | - | chr4.4:14925498-14925517 | None:intergenic | 35.0% | |
TTCAAGGGAAAGTGAACTTA+CGG | - | chr4.4:14924384-14924403 | None:intergenic | 35.0% | |
TTCGTAGATTGATTGAGAGT+AGG | + | chr4.4:14923425-14923444 | MS.gene08979:CDS | 35.0% | |
TTGTCATGCATTCTCATTGT+AGG | + | chr4.4:14924998-14925017 | MS.gene08979:intron | 35.0% | |
TTGTTAGGAAAGATGATCGT+AGG | + | chr4.4:14923401-14923420 | MS.gene08979:CDS | 35.0% | |
! | AGATTGTTGTTGAGGAGATT+CGG | + | chr4.4:14923863-14923882 | MS.gene08979:CDS | 35.0% |
! | GGATGCTAATTTTATACCTC+TGG | + | chr4.4:14925388-14925407 | MS.gene08979:intron | 35.0% |
! | GTAAATGTCCAAGACCATTT+TGG | - | chr4.4:14924542-14924561 | None:intergenic | 35.0% |
! | TGTCCCTTATGGAGATTTTT+AGG | + | chr4.4:14925268-14925287 | MS.gene08979:intron | 35.0% |
! | TTTGAGGATTGAGAAGGTTT+TGG | - | chr4.4:14924117-14924136 | None:intergenic | 35.0% |
!! | CATTCTCATTGTAGGTTGAT+AGG | + | chr4.4:14925006-14925025 | MS.gene08979:intron | 35.0% |
!! | GAAACCAGCTTTAGCATTTT+AGG | + | chr4.4:14925065-14925084 | MS.gene08979:intron | 35.0% |
!! | GATTGTTTCTACCATTGAAG+AGG | + | chr4.4:14923501-14923520 | MS.gene08979:CDS | 35.0% |
!! | GTATGATACTGATTCTGATG+AGG | + | chr4.4:14923690-14923709 | MS.gene08979:CDS | 35.0% |
!! | TTAACACTGATTTGCAATGC+AGG | + | chr4.4:14925447-14925466 | MS.gene08979:intron | 35.0% |
!!! | GTCTATTCTCTTGGTGTTTT+TGG | + | chr4.4:14924842-14924861 | MS.gene08979:intron | 35.0% |
AAAGTGAATCGTTATTGGCC+TGG | + | chr4.4:14923265-14923284 | MS.gene08979:CDS | 40.0% | |
ACACTCATCCAAAATGGTCT+TGG | + | chr4.4:14924531-14924550 | MS.gene08979:intron | 40.0% | |
AGAACAAGATGAGGATGCTA+TGG | + | chr4.4:14923555-14923574 | MS.gene08979:CDS | 40.0% | |
AGATAACCGTGAGGAAGTTA+GGG | + | chr4.4:14923450-14923469 | MS.gene08979:CDS | 40.0% | |
AGGAAAAAGAAGAGGTTGAG+AGG | + | chr4.4:14924043-14924062 | MS.gene08979:CDS | 40.0% | |
ATTGTATCTCTCTCCGACTT+TGG | - | chr4.4:14923754-14923773 | None:intergenic | 40.0% | |
CCTATCGGATCTAATATCAC+CGG | - | chr4.4:14923332-14923351 | None:intergenic | 40.0% | |
CGGTGATATTAGATCCGATA+GGG | + | chr4.4:14923330-14923349 | MS.gene08979:CDS | 40.0% | |
CTCAATCCTCAAAGCAGAAA+TGG | + | chr4.4:14924124-14924143 | MS.gene08979:CDS | 40.0% | |
GAGAATGCATGACAAAACTC+TGG | - | chr4.4:14924993-14925012 | None:intergenic | 40.0% | |
GGAAAAAGAAGAGGTTGAGA+GGG | + | chr4.4:14924044-14924063 | MS.gene08979:CDS | 40.0% | |
GGGAGGATCATAGAAGAATT+CGG | + | chr4.4:14923470-14923489 | MS.gene08979:CDS | 40.0% | |
GGTTTGACACTCATCCAAAA+TGG | + | chr4.4:14924525-14924544 | MS.gene08979:intron | 40.0% | |
GTTATGCAAGTCAAGCACTT+TGG | + | chr4.4:14924297-14924316 | MS.gene08979:CDS | 40.0% | |
TCAAGGGAAAGTGAACTTAC+GGG | - | chr4.4:14924383-14924402 | None:intergenic | 40.0% | |
TCAATGAGGACACTACTGAT+TGG | + | chr4.4:14924352-14924371 | MS.gene08979:CDS | 40.0% | |
! | AACGAGGTTAGTTAGCTACA+TGG | - | chr4.4:14925182-14925201 | None:intergenic | 40.0% |
! | CTTGTCCATTTTATCTTCCC+CGG | - | chr4.4:14924262-14924281 | None:intergenic | 40.0% |
! | TCATTATACTTGGCTCGAAG+TGG | - | chr4.4:14925488-14925507 | None:intergenic | 40.0% |
! | TGTTTCTACCATTGAAGAGG+AGG | + | chr4.4:14923504-14923523 | MS.gene08979:CDS | 40.0% |
!! | TGCTTGACTTGCATAACCTT+GGG | - | chr4.4:14924294-14924313 | None:intergenic | 40.0% |
!! | TTCTGCTTTGAGGATTGAGA+AGG | - | chr4.4:14924123-14924142 | None:intergenic | 40.0% |
AAGAACTAAGTGGTCCCATC+TGG | + | chr4.4:14924329-14924348 | MS.gene08979:CDS | 45.0% | |
AAGGAGATCGAAGATGCATC+CGG | + | chr4.4:14923310-14923329 | MS.gene08979:CDS | 45.0% | |
ACAAGATGAGGATGCTATGG+CGG | + | chr4.4:14923558-14923577 | MS.gene08979:CDS | 45.0% | |
ACCAACCGGGGAAGATAAAA+TGG | + | chr4.4:14924254-14924273 | MS.gene08979:CDS | 45.0% | |
AGAGATTGGTAGGATCAAGC+GGG | + | chr4.4:14923993-14924012 | MS.gene08979:CDS | 45.0% | |
AGGATATGAAGACGACCAAG+TGG | + | chr4.4:14924647-14924666 | MS.gene08979:intron | 45.0% | |
AGGCAGAGGAATATGAAGCT+TGG | + | chr4.4:14923962-14923981 | MS.gene08979:CDS | 45.0% | |
AGTGTCCTCATTGACCAGAT+GGG | - | chr4.4:14924346-14924365 | None:intergenic | 45.0% | |
ATCCAAAGCAGCTTCCCTAT+CGG | - | chr4.4:14923347-14923366 | None:intergenic | 45.0% | |
ATCTCCTTATCAGCCCATTC+GGG | - | chr4.4:14923298-14923317 | None:intergenic | 45.0% | |
CAGATAACCGTGAGGAAGTT+AGG | + | chr4.4:14923449-14923468 | MS.gene08979:CDS | 45.0% | |
CCGGTGATATTAGATCCGAT+AGG | + | chr4.4:14923329-14923348 | MS.gene08979:CDS | 45.0% | |
CTCGGTCATCAGAATTAGAC+TGG | - | chr4.4:14924188-14924207 | None:intergenic | 45.0% | |
CTTCCTTTAGGCTTCGCTAT+AGG | - | chr4.4:14925533-14925552 | None:intergenic | 45.0% | |
GAGAGATTGGTAGGATCAAG+CGG | + | chr4.4:14923992-14924011 | MS.gene08979:CDS | 45.0% | |
GATCTCCTTATCAGCCCATT+CGG | - | chr4.4:14923299-14923318 | None:intergenic | 45.0% | |
GCAGTATCTTCTTCATGACG+AGG | - | chr4.4:14923379-14923398 | None:intergenic | 45.0% | |
GCCTGTGTTTGTTCCAAAGT+CGG | + | chr4.4:14923738-14923757 | MS.gene08979:CDS | 45.0% | |
GCTGCCTAAAATGCTAAAGC+TGG | - | chr4.4:14925072-14925091 | None:intergenic | 45.0% | |
GCTGTAAGGGATAAGCTTAG+AGG | + | chr4.4:14923226-14923245 | MS.gene08979:CDS | 45.0% | |
GCTTGGAAAGTGAGAGAGAT+TGG | + | chr4.4:14923979-14923998 | MS.gene08979:CDS | 45.0% | |
GGAAAGTGAGAGAGATTGGT+AGG | + | chr4.4:14923983-14924002 | MS.gene08979:CDS | 45.0% | |
GGATCATAGAAGAATTCGGC+AGG | + | chr4.4:14923474-14923493 | MS.gene08979:CDS | 45.0% | |
GGTCCTGAAGTAAGATTGCA+TGG | - | chr4.4:14925328-14925347 | None:intergenic | 45.0% | |
TAGTGTCCTCATTGACCAGA+TGG | - | chr4.4:14924347-14924366 | None:intergenic | 45.0% | |
TGTTGTTGAGGAGATTCGGA+AGG | + | chr4.4:14923867-14923886 | MS.gene08979:CDS | 45.0% | |
TTTCCTTCAACAGTGCCTCA+CGG | - | chr4.4:14924029-14924048 | None:intergenic | 45.0% | |
! | CACTGATGATGAACTCAACG+AGG | + | chr4.4:14923942-14923961 | MS.gene08979:CDS | 45.0% |
! | GATTCTGATGAGGAGTACAC+TGG | + | chr4.4:14923700-14923719 | MS.gene08979:CDS | 45.0% |
! | TCCATTTTATCTTCCCCGGT+TGG | - | chr4.4:14924258-14924277 | None:intergenic | 45.0% |
!! | ACACTGATTTGCAATGCAGG+TGG | + | chr4.4:14925450-14925469 | MS.gene08979:intron | 45.0% |
!! | GGAGAGAAGAAGACGGATTA+AGG | + | chr4.4:14923579-14923598 | MS.gene08979:CDS | 45.0% |
!! | GTGCTTGACTTGCATAACCT+TGG | - | chr4.4:14924295-14924314 | None:intergenic | 45.0% |
!! | TCCGACTTTGGAACAAACAC+AGG | - | chr4.4:14923742-14923761 | None:intergenic | 45.0% |
!! | TTTCTAGGACAAGACGAGAG+TGG | - | chr4.4:14925349-14925368 | None:intergenic | 45.0% |
!!! | GAGAGAAGCAATGTTTTGGC+AGG | - | chr4.4:14924472-14924491 | None:intergenic | 45.0% |
AAGAAGAGGTTGAGAGGGTG+AGG | + | chr4.4:14924049-14924068 | MS.gene08979:CDS | 50.0% | |
AGAGGAGGAAAGGAGAGAGT+GGG | + | chr4.4:14924080-14924099 | MS.gene08979:CDS | 50.0% | |
AGAGGAGGAAGAAGAAGAGG+AGG | + | chr4.4:14923657-14923676 | MS.gene08979:CDS | 50.0% | |
AGCAAGGAAGAGGAGAATGG+AGG | + | chr4.4:14923819-14923838 | MS.gene08979:CDS | 50.0% | |
AGGAAAGGAGAGAGTGGGAA+AGG | + | chr4.4:14924085-14924104 | MS.gene08979:CDS | 50.0% | |
AGGAGAGGAGAAATGAGACG+AGG | + | chr4.4:14923839-14923858 | MS.gene08979:CDS | 50.0% | |
ATCCGATAGGGAAGCTGCTT+TGG | + | chr4.4:14923342-14923361 | MS.gene08979:CDS | 50.0% | |
CTCTTGAGGAAGCAAGGAAG+AGG | + | chr4.4:14923809-14923828 | MS.gene08979:CDS | 50.0% | |
GAAGTTGCGTCAGAGAGATC+AGG | + | chr4.4:14923603-14923622 | MS.gene08979:CDS | 50.0% | |
GAGTAGGACAGATAACCGTG+AGG | + | chr4.4:14923441-14923460 | MS.gene08979:CDS | 50.0% | |
GATCCTCCCTAACTTCCTCA+CGG | - | chr4.4:14923459-14923478 | None:intergenic | 50.0% | |
GGAACATGACAGAGGAGGAA+AGG | + | chr4.4:14924070-14924089 | MS.gene08979:CDS | 50.0% | |
GGAAGAGGAGGAAGAAGAAG+AGG | + | chr4.4:14923654-14923673 | MS.gene08979:CDS | 50.0% | |
GGAAGCAAGGAAGAGGAGAA+TGG | + | chr4.4:14923816-14923835 | MS.gene08979:CDS | 50.0% | |
GGACAAGACAATACTGCCCA+AGG | + | chr4.4:14924275-14924294 | MS.gene08979:CDS | 50.0% | |
GGAGGCGAATATTGCTGATG+TGG | + | chr4.4:14923918-14923937 | MS.gene08979:CDS | 50.0% | |
GGAGTACACTGGAGTAGCTA+TGG | + | chr4.4:14923711-14923730 | MS.gene08979:CDS | 50.0% | |
GTCGCAGTGGAAGAACTAAG+TGG | + | chr4.4:14924319-14924338 | MS.gene08979:CDS | 50.0% | |
TAACCGTGAGGAAGTTAGGG+AGG | + | chr4.4:14923453-14923472 | MS.gene08979:CDS | 50.0% | |
TGATGAACTCAACGAGGCAG+AGG | + | chr4.4:14923948-14923967 | MS.gene08979:CDS | 50.0% | |
TGGTAGGATCAAGCGGGATA+GGG | + | chr4.4:14923999-14924018 | MS.gene08979:CDS | 50.0% | |
TTGGTAGGATCAAGCGGGAT+AGG | + | chr4.4:14923998-14924017 | MS.gene08979:CDS | 50.0% | |
! | AGGCAGCATTTGCTGCATCA+CGG | + | chr4.4:14925085-14925104 | MS.gene08979:intron | 50.0% |
! | CTATGGCGGAGAGAAGAAGA+CGG | + | chr4.4:14923572-14923591 | MS.gene08979:CDS | 50.0% |
! | GACGAGGCAGATTGTTGTTG+AGG | + | chr4.4:14923855-14923874 | MS.gene08979:CDS | 50.0% |
AGCTGAAGAGGAGGCTCTTG+AGG | + | chr4.4:14923795-14923814 | MS.gene08979:CDS | 55.0% | |
AGGAGGCTCTTGAGGAAGCA+AGG | + | chr4.4:14923803-14923822 | MS.gene08979:CDS | 55.0% | |
CAGAGGAGGAAAGGAGAGAG+TGG | + | chr4.4:14924079-14924098 | MS.gene08979:CDS | 55.0% | |
CAGTTCCAACAGTGGCAGCT+CGG | - | chr4.4:14924206-14924225 | None:intergenic | 55.0% | |
CCATTGAAGAGGAGGCGAAG+AGG | + | chr4.4:14923512-14923531 | MS.gene08979:CDS | 55.0% | |
CCTCTTCGCCTCCTCTTCAA+TGG | - | chr4.4:14923515-14923534 | None:intergenic | 55.0% | |
CGATTTCTCTGCACCAACCG+GGG | + | chr4.4:14924242-14924261 | MS.gene08979:CDS | 55.0% | |
CGCGATTTCTCTGCACCAAC+CGG | + | chr4.4:14924240-14924259 | MS.gene08979:CDS | 55.0% | |
GAGGGTGAGGAACATGACAG+AGG | + | chr4.4:14924062-14924081 | MS.gene08979:CDS | 55.0% | |
GCCTGGTAAAGCTCCCGAAT+GGG | + | chr4.4:14923282-14923301 | MS.gene08979:CDS | 55.0% | |
GCGATTTCTCTGCACCAACC+GGG | + | chr4.4:14924241-14924260 | MS.gene08979:CDS | 55.0% | |
GCGCCTATAGCGAAGCCTAA+AGG | + | chr4.4:14925527-14925546 | MS.gene08979:CDS | 55.0% | |
GGAAGAGGAGAATGGAGGAG+AGG | + | chr4.4:14923824-14923843 | MS.gene08979:CDS | 55.0% | |
GGAGGAAGAAGAAGAGGAGG+AGG | + | chr4.4:14923660-14923679 | MS.gene08979:CDS | 55.0% | |
GGTGAGGAACATGACAGAGG+AGG | + | chr4.4:14924065-14924084 | MS.gene08979:CDS | 55.0% | |
GTCAAGCACTTTGGTCGCAG+TGG | + | chr4.4:14924306-14924325 | MS.gene08979:CDS | 55.0% | |
GTGGTCCCATCTGGTCAATG+AGG | + | chr4.4:14924338-14924357 | MS.gene08979:CDS | 55.0% | |
GTTGCGTCAGAGAGATCAGG+AGG | + | chr4.4:14923606-14923625 | MS.gene08979:CDS | 55.0% | |
TAGGATCAAGCGGGATAGGG+AGG | + | chr4.4:14924002-14924021 | MS.gene08979:CDS | 55.0% | |
TCAGGAAGAGGAGGAGGAAG+AGG | + | chr4.4:14923639-14923658 | MS.gene08979:CDS | 55.0% | |
TCTTCCTCCTCCTCTTCCTG+AGG | - | chr4.4:14923640-14923659 | None:intergenic | 55.0% | |
TGAGCGTCTCGAAGCTGAAG+AGG | + | chr4.4:14923783-14923802 | MS.gene08979:CDS | 55.0% | |
!! | AGCTCCCGAATGGGCTGATA+AGG | + | chr4.4:14923291-14923310 | MS.gene08979:CDS | 55.0% |
AGCGCTTCCTCAGGAAGAGG+AGG | + | chr4.4:14923630-14923649 | MS.gene08979:CDS | 60.0% | |
AGGAGGCGAAGAGGCAGGAA+GGG | + | chr4.4:14923521-14923540 | MS.gene08979:CDS | 60.0% | |
GATGACCGAGCTGCCACTGT+TGG | + | chr4.4:14924198-14924217 | MS.gene08979:CDS | 60.0% | |
GCCCATTCGGGAGCTTTACC+AGG | - | chr4.4:14923286-14923305 | None:intergenic | 60.0% | |
GCGTCTCGAAGCTGAAGAGG+AGG | + | chr4.4:14923786-14923805 | MS.gene08979:CDS | 60.0% | |
GCTTCCTCAGGAAGAGGAGG+AGG | + | chr4.4:14923633-14923652 | MS.gene08979:CDS | 60.0% | |
GGAAGAGGAGGAGGAAGAGG+AGG | + | chr4.4:14923642-14923661 | MS.gene08979:CDS | 60.0% | |
GGCCTGGTAAAGCTCCCGAA+TGG | + | chr4.4:14923281-14923300 | MS.gene08979:CDS | 60.0% | |
TGAAGAGGAGGCGAAGAGGC+AGG | + | chr4.4:14923516-14923535 | MS.gene08979:CDS | 60.0% | |
!! | GGAAGCGCTTCCTCAGGAAG+AGG | + | chr4.4:14923627-14923646 | MS.gene08979:CDS | 60.0% |
!! | GGACCGTGAGGCACTGTTGA+AGG | + | chr4.4:14924023-14924042 | MS.gene08979:CDS | 60.0% |
!! | TCAGGAGGAAGCGCTTCCTC+AGG | + | chr4.4:14923621-14923640 | MS.gene08979:CDS | 60.0% |
GAGGAGGCGAAGAGGCAGGA+AGG | + | chr4.4:14923520-14923539 | MS.gene08979:CDS | 65.0% | |
GGCGAAGAGGCAGGAAGGGT+TGG | + | chr4.4:14923525-14923544 | MS.gene08979:CDS | 65.0% | |
GCGGGATAGGGAGGACCGTG+AGG | + | chr4.4:14924011-14924030 | MS.gene08979:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 14923190 | 14925583 | 14923190 | ID=MS.gene08979 |
chr4.4 | mRNA | 14923190 | 14925583 | 14923190 | ID=MS.gene08979.t1;Parent=MS.gene08979 |
chr4.4 | exon | 14923190 | 14924382 | 14923190 | ID=MS.gene08979.t1.exon1;Parent=MS.gene08979.t1 |
chr4.4 | CDS | 14923190 | 14924382 | 14923190 | ID=cds.MS.gene08979.t1;Parent=MS.gene08979.t1 |
chr4.4 | exon | 14925469 | 14925583 | 14925469 | ID=MS.gene08979.t1.exon2;Parent=MS.gene08979.t1 |
chr4.4 | CDS | 14925469 | 14925583 | 14925469 | ID=cds.MS.gene08979.t1;Parent=MS.gene08979.t1 |
Gene Sequence |
Protein sequence |