Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09009.t1 | KEH20620.1 | 98.7 | 525 | 7 | 0 | 1 | 525 | 1 | 525 | 5.90E-290 | 1006.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09009.t1 | A0A1P8B760 | 59.3 | 484 | 183 | 5 | 30 | 508 | 34 | 508 | 1.3e-149 | 531.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09009.t1 | A0A072U452 | 98.7 | 525 | 7 | 0 | 1 | 525 | 1 | 525 | 4.2e-290 | 1006.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049343 | MS.gene09009 | 0.810905 | 9.14E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene09009 | 0.800608 | 1.33E-48 | -1.69E-46 |
| MS.gene049873 | MS.gene09009 | 0.804823 | 1.80E-49 | -1.69E-46 |
| MS.gene050156 | MS.gene09009 | 0.824294 | 8.72E-54 | -1.69E-46 |
| MS.gene050355 | MS.gene09009 | 0.811842 | 5.72E-51 | -1.69E-46 |
| MS.gene050799 | MS.gene09009 | 0.804818 | 1.80E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene09009 | 0.839336 | 1.68E-57 | -1.69E-46 |
| MS.gene053145 | MS.gene09009 | 0.833304 | 5.76E-56 | -1.69E-46 |
| MS.gene054651 | MS.gene09009 | 0.8094 | 1.93E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene09009 | 0.810849 | 9.40E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene09009 | 0.823795 | 1.14E-53 | -1.69E-46 |
| MS.gene056366 | MS.gene09009 | 0.801916 | 7.18E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene09009 | 0.819625 | 1.05E-52 | -1.69E-46 |
| MS.gene058829 | MS.gene09009 | 0.8077 | 4.45E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09009.t1 | MTR_8g080840 | 98.667 | 525 | 7 | 0 | 1 | 525 | 1 | 525 | 0.0 | 1063 |
| MS.gene09009.t1 | MTR_8g097220 | 87.041 | 517 | 63 | 3 | 3 | 517 | 1 | 515 | 0.0 | 923 |
| MS.gene09009.t1 | MTR_8g080890 | 85.049 | 515 | 72 | 2 | 3 | 513 | 1 | 514 | 0.0 | 889 |
| MS.gene09009.t1 | MTR_8g080880 | 84.333 | 517 | 75 | 2 | 3 | 515 | 1 | 515 | 0.0 | 881 |
| MS.gene09009.t1 | MTR_8g080870 | 86.037 | 487 | 67 | 1 | 30 | 515 | 1 | 487 | 0.0 | 866 |
| MS.gene09009.t1 | MTR_4g074030 | 60.825 | 485 | 181 | 7 | 31 | 508 | 25 | 507 | 0.0 | 571 |
| MS.gene09009.t1 | MTR_4g073970 | 57.705 | 305 | 115 | 7 | 205 | 499 | 1 | 301 | 1.35e-112 | 336 |
| MS.gene09009.t1 | MTR_4g073980 | 64.029 | 139 | 47 | 2 | 44 | 181 | 26 | 162 | 5.94e-52 | 175 |
| MS.gene09009.t1 | MTR_8g080850 | 87.500 | 80 | 10 | 0 | 438 | 517 | 1 | 80 | 7.31e-42 | 145 |
| MS.gene09009.t1 | MTR_8g095600 | 32.558 | 258 | 157 | 7 | 32 | 287 | 154 | 396 | 1.88e-29 | 122 |
| MS.gene09009.t1 | MTR_8g095600 | 32.558 | 258 | 157 | 7 | 32 | 287 | 154 | 396 | 8.45e-29 | 120 |
| MS.gene09009.t1 | MTR_8g095600 | 32.558 | 258 | 157 | 7 | 32 | 287 | 170 | 412 | 9.34e-29 | 120 |
| MS.gene09009.t1 | MTR_8g095600 | 32.558 | 258 | 157 | 7 | 32 | 287 | 154 | 396 | 9.51e-29 | 120 |
| MS.gene09009.t1 | MTR_3g048950 | 25.185 | 540 | 319 | 14 | 22 | 500 | 5 | 520 | 1.52e-26 | 113 |
| MS.gene09009.t1 | MTR_2g010180 | 25.458 | 491 | 301 | 12 | 41 | 499 | 130 | 587 | 1.15e-21 | 99.0 |
| MS.gene09009.t1 | MTR_2g010180 | 25.407 | 492 | 302 | 12 | 41 | 500 | 144 | 602 | 1.23e-21 | 99.0 |
| MS.gene09009.t1 | MTR_2g010180 | 25.407 | 492 | 302 | 12 | 41 | 500 | 130 | 588 | 1.44e-21 | 99.0 |
| MS.gene09009.t1 | MTR_3g096980 | 26.033 | 484 | 322 | 17 | 40 | 507 | 135 | 598 | 1.36e-18 | 89.4 |
| MS.gene09009.t1 | MTR_1g082750 | 39.496 | 119 | 66 | 2 | 140 | 257 | 63 | 176 | 2.25e-14 | 75.5 |
| MS.gene09009.t1 | MTR_8g094740 | 28.516 | 256 | 166 | 6 | 26 | 271 | 117 | 365 | 1.79e-12 | 70.1 |
| MS.gene09009.t1 | MTR_8g094740 | 28.516 | 256 | 166 | 6 | 26 | 271 | 117 | 365 | 2.07e-12 | 70.1 |
| MS.gene09009.t1 | MTR_4g094205 | 38.017 | 121 | 69 | 2 | 138 | 257 | 107 | 222 | 1.63e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09009.t1 | AT4G34880 | 60.950 | 484 | 175 | 5 | 30 | 508 | 34 | 508 | 0.0 | 562 |
| MS.gene09009.t1 | AT4G34880 | 53.830 | 483 | 165 | 6 | 30 | 508 | 34 | 462 | 2.92e-173 | 497 |
| MS.gene09009.t1 | AT5G07360 | 33.068 | 251 | 155 | 6 | 33 | 281 | 197 | 436 | 1.79e-27 | 117 |
| MS.gene09009.t1 | AT5G07360 | 33.068 | 251 | 155 | 6 | 33 | 281 | 197 | 436 | 1.79e-27 | 117 |
| MS.gene09009.t1 | AT3G25660 | 32.432 | 296 | 183 | 7 | 51 | 340 | 56 | 340 | 7.29e-25 | 108 |
| MS.gene09009.t1 | AT5G07360 | 32.669 | 251 | 149 | 7 | 33 | 281 | 197 | 429 | 2.52e-24 | 107 |
| MS.gene09009.t1 | AT5G64440 | 25.000 | 504 | 317 | 15 | 35 | 508 | 125 | 597 | 1.36e-21 | 99.0 |
| MS.gene09009.t1 | AT1G08980 | 39.695 | 131 | 70 | 3 | 140 | 266 | 64 | 189 | 9.85e-16 | 79.7 |
| MS.gene09009.t1 | AT5G09420 | 39.496 | 119 | 62 | 3 | 138 | 253 | 105 | 216 | 1.18e-11 | 67.8 |
Find 114 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACATATACCGACCAATTT+TGG | 0.122914 | 4.4:-15173355 | None:intergenic |
| TGAGACCAACTGTTGGTTTA+AGG | 0.180487 | 4.4:-15171565 | None:intergenic |
| GTTGCATGGAATACCTATTT+TGG | 0.183488 | 4.4:+15170380 | MS.gene09009:CDS |
| AAAGCTGGTGCTATCATATT+AGG | 0.197346 | 4.4:+15170510 | MS.gene09009:CDS |
| CAAGTTGTCTTGATGTTAAT+TGG | 0.201405 | 4.4:-15170221 | None:intergenic |
| GAGCCATTTGGAATTTGTTT+TGG | 0.235593 | 4.4:+15173699 | MS.gene09009:CDS |
| GTGAAGCTACTAAATCTTTC+AGG | 0.241049 | 4.4:-15173288 | None:intergenic |
| ATGTCAAGATGGTCAGAAAA+TGG | 0.249306 | 4.4:+15173552 | MS.gene09009:CDS |
| GCTGAAAAGACGAACGGTTT+TGG | 0.251634 | 4.4:+15173501 | MS.gene09009:CDS |
| TATAAAATTGTAGGAGAAAA+TGG | 0.263811 | 4.4:+15173452 | MS.gene09009:intron |
| GTGTCTTGCCTTGGGCTAAT+TGG | 0.289799 | 4.4:-15171608 | None:intergenic |
| TGAGTGAGTGGTCACATTAC+AGG | 0.307159 | 4.4:+15170544 | MS.gene09009:CDS |
| AATTGAGCATAGCCACCTTT+TGG | 0.307622 | 4.4:-15171919 | None:intergenic |
| TCTGCTTGTGCTAATGCATC+TGG | 0.313056 | 4.4:-15170309 | None:intergenic |
| CAGGCAAAGAGGTGCAGTTT+TGG | 0.328515 | 4.4:+15173168 | MS.gene09009:intron |
| ATACAAAACCCAGTTCTAAA+AGG | 0.340481 | 4.4:+15170270 | MS.gene09009:CDS |
| AGGAGAATGTAACTAGTATA+AGG | 0.343336 | 4.4:-15170110 | None:intergenic |
| AAGGCCTGAAGGGCATAAAA+TGG | 0.343475 | 4.4:-15171528 | None:intergenic |
| CCCAGTTCTAAAAGGAATCT+TGG | 0.351151 | 4.4:+15170278 | MS.gene09009:CDS |
| TACCCAACTGTGTCTTGCCT+TGG | 0.352871 | 4.4:-15171617 | None:intergenic |
| TTGATGTTAATTGGTTTCTC+TGG | 0.358585 | 4.4:-15170212 | None:intergenic |
| AAACACCAAGTTCTCTTTCA+AGG | 0.367223 | 4.4:+15170358 | MS.gene09009:CDS |
| GTGTTATCCTTAACCAAAAT+AGG | 0.372541 | 4.4:-15170393 | None:intergenic |
| ACCCAACTGTGTCTTGCCTT+GGG | 0.380722 | 4.4:-15171616 | None:intergenic |
| GTGAGATACTACTACGAGTT+TGG | 0.381127 | 4.4:+15171982 | MS.gene09009:CDS |
| CAATGAGAAACACCCAAAAT+TGG | 0.384496 | 4.4:+15173342 | MS.gene09009:CDS |
| TTTAGCCACATACTGGCTAT+TGG | 0.398364 | 4.4:+15173633 | MS.gene09009:CDS |
| TCTGATACAGTCCTACAAAT+TGG | 0.399411 | 4.4:-15171820 | None:intergenic |
| CTGGCTATTGGAGGTTATCC+TGG | 0.400039 | 4.4:+15173645 | MS.gene09009:CDS |
| TATGAAAAGGGTGAGCCATT+TGG | 0.400795 | 4.4:+15173687 | MS.gene09009:CDS |
| AATATCAGTAGCAGCAAATC+TGG | 0.401868 | 4.4:+15171472 | MS.gene09009:CDS |
| TAAGGATAACACTGCAACTA+AGG | 0.409299 | 4.4:+15170404 | MS.gene09009:CDS |
| TTGTAGGAGAAAATGGAGTA+TGG | 0.417039 | 4.4:+15173459 | MS.gene09009:intron |
| TAAGCAATTTCAATCAACTT+TGG | 0.417086 | 4.4:-15173741 | None:intergenic |
| AGCACCAGCTTTCCTTAACT+TGG | 0.417639 | 4.4:-15170499 | None:intergenic |
| AGCTTCACCGGTGAACAGTT+TGG | 0.420459 | 4.4:+15173303 | MS.gene09009:CDS |
| CAGCTTGCACCAATACATCT+TGG | 0.421918 | 4.4:-15173482 | None:intergenic |
| AAGCTGGTGCTATCATATTA+GGG | 0.437374 | 4.4:+15170511 | MS.gene09009:CDS |
| ATGTGGCTAAAGGACCAAAA+AGG | 0.440108 | 4.4:-15173621 | None:intergenic |
| TACAGGTCTAGTAAAGTTCC+TGG | 0.443202 | 4.4:+15170561 | MS.gene09009:CDS |
| CAAGGATCATCCAATGTGTA+TGG | 0.446045 | 4.4:-15171428 | None:intergenic |
| TTGGTCCTTTAGCCACATAC+TGG | 0.448388 | 4.4:+15173626 | MS.gene09009:CDS |
| ATGTAACTAGTATAAGGAAT+TGG | 0.457413 | 4.4:-15170104 | None:intergenic |
| GTTGAAAATTACAAATAAGA+TGG | 0.457474 | 4.4:+15173812 | MS.gene09009:CDS |
| TAAGGCCCACCACTGAGTTA+AGG | 0.459410 | 4.4:-15171547 | None:intergenic |
| GCCCAAGGCAAGACACAGTT+GGG | 0.473558 | 4.4:+15171615 | MS.gene09009:CDS |
| TTCAGGCCTTAACTCAGTGG+TGG | 0.475317 | 4.4:+15171541 | MS.gene09009:CDS |
| GGACTAAGAGGAAAGAGATT+AGG | 0.477099 | 4.4:+15171955 | MS.gene09009:CDS |
| GATTGAGAATTCACTGGCCA+AGG | 0.482825 | 4.4:-15170154 | None:intergenic |
| TGTCAAGATGGTCAGAAAAT+GGG | 0.483186 | 4.4:+15173553 | MS.gene09009:CDS |
| TGCAACCTTGAAAGAGAACT+TGG | 0.486425 | 4.4:-15170363 | None:intergenic |
| TTCAACTTCCTAAGGGGAGG+TGG | 0.486904 | 4.4:-15173795 | None:intergenic |
| CTAGTAAAGTTCCTGGTGGT+TGG | 0.493749 | 4.4:+15170568 | MS.gene09009:CDS |
| TTCCTTGATTGAGAATTCAC+TGG | 0.494928 | 4.4:-15170160 | None:intergenic |
| TCAGAAAGCCACCTCCCCTT+AGG | 0.498866 | 4.4:+15173787 | MS.gene09009:CDS |
| TGTTCCAGCAGGATATGAAA+AGG | 0.501251 | 4.4:+15173674 | MS.gene09009:CDS |
| CCTCCAAAACAAATTCCAAA+TGG | 0.513160 | 4.4:-15173702 | None:intergenic |
| GGCCAGTGAATTCTCAATCA+AGG | 0.515296 | 4.4:+15170158 | MS.gene09009:CDS |
| CAGGTGTGGTTACCAAGTTA+AGG | 0.515753 | 4.4:+15170487 | MS.gene09009:CDS |
| CTAAAGAAAGACGGACTAAG+AGG | 0.516133 | 4.4:+15171943 | MS.gene09009:CDS |
| GTAACCACACCTGCATCTCT+TGG | 0.516366 | 4.4:-15170477 | None:intergenic |
| TCAGTCGTGCCAAGAGATGC+AGG | 0.516688 | 4.4:+15170468 | MS.gene09009:CDS |
| GCATCAAAGTATATCCCAAA+AGG | 0.517964 | 4.4:+15171904 | MS.gene09009:CDS |
| TAAAGCTGACCAAGAGAGAA+GGG | 0.520548 | 4.4:+15170332 | MS.gene09009:CDS |
| AAAAGTGTCGATGCCTGCTA+TGG | 0.521373 | 4.4:-15171863 | None:intergenic |
| GGAGTATGGCCAAGATGTAT+TGG | 0.522951 | 4.4:+15173473 | MS.gene09009:CDS |
| AGTTCTCTTTCAAGGTTGCA+TGG | 0.523607 | 4.4:+15170366 | MS.gene09009:CDS |
| GGTTTCATCACTCATGGTCA+TGG | 0.524958 | 4.4:+15170056 | None:intergenic |
| AGCCACATACTGGCTATTGG+AGG | 0.525826 | 4.4:+15173636 | MS.gene09009:CDS |
| AATAGCCAGTATGTGGCTAA+AGG | 0.528869 | 4.4:-15173631 | None:intergenic |
| GTTACCAAGTTAAGGAAAGC+TGG | 0.537797 | 4.4:+15170495 | MS.gene09009:CDS |
| CCACTGAGTTAAGGCCTGAA+GGG | 0.544901 | 4.4:-15171538 | None:intergenic |
| GATAGATTGAACACTACTGC+TGG | 0.550587 | 4.4:+15170426 | MS.gene09009:CDS |
| GAAAGATTTAGTAGCTTCAC+CGG | 0.550684 | 4.4:+15173291 | MS.gene09009:CDS |
| TTCAAAGCAATAGATTCACT+TGG | 0.552004 | 4.4:-15173235 | None:intergenic |
| GATCCTTGTGGTTCAAGTAG+TGG | 0.552399 | 4.4:+15171443 | MS.gene09009:CDS |
| TGTGTTCTTGAAACCATAGC+AGG | 0.553334 | 4.4:+15171850 | MS.gene09009:CDS |
| AGCCCAAGGCAAGACACAGT+TGG | 0.555092 | 4.4:+15171614 | MS.gene09009:CDS |
| GTTGGTCTCACTAGTAGAGC+AGG | 0.557670 | 4.4:+15171578 | MS.gene09009:CDS |
| TGCTAGAGGTGGACAAGGAA+AGG | 0.563245 | 4.4:+15170593 | MS.gene09009:CDS |
| TCAGGCCTTAACTCAGTGGT+GGG | 0.564541 | 4.4:+15171542 | MS.gene09009:CDS |
| GGAAGGCCACTTTGAGTGAG+TGG | 0.565034 | 4.4:+15170532 | MS.gene09009:CDS |
| GTTGAAATTATCAGGCAAAG+AGG | 0.565242 | 4.4:+15173157 | MS.gene09009:intron |
| ACCACTGAGTTAAGGCCTGA+AGG | 0.569080 | 4.4:-15171539 | None:intergenic |
| ATAAAGCTGACCAAGAGAGA+AGG | 0.580983 | 4.4:+15170331 | MS.gene09009:CDS |
| GCTCAATTTCTAAAGAAAGA+CGG | 0.585283 | 4.4:+15171934 | MS.gene09009:CDS |
| CCCTTCAGGCCTTAACTCAG+TGG | 0.586720 | 4.4:+15171538 | MS.gene09009:CDS |
| AACCTCCAATAGCCAGTATG+TGG | 0.588183 | 4.4:-15173638 | None:intergenic |
| CCTGCTGGAACACTCACTCC+AGG | 0.588550 | 4.4:-15173663 | None:intergenic |
| CCTCTAGCATTCCAACCACC+AGG | 0.589318 | 4.4:-15170579 | None:intergenic |
| GTTCCAGCAGGATATGAAAA+GGG | 0.591011 | 4.4:+15173675 | MS.gene09009:CDS |
| CATTATTGAATATGTCAAGA+TGG | 0.595401 | 4.4:+15173541 | MS.gene09009:CDS |
| ACATCTGCCAAACTGTTCAC+CGG | 0.595656 | 4.4:-15173310 | None:intergenic |
| ATGTGACCACTCACTCAAAG+TGG | 0.600148 | 4.4:-15170538 | None:intergenic |
| TTGTGGTTCAAGTAGTGGAT+CGG | 0.605165 | 4.4:+15171448 | MS.gene09009:CDS |
| CCTGGAGTGAGTGTTCCAGC+AGG | 0.610841 | 4.4:+15173663 | MS.gene09009:CDS |
| TGGTGCTATCATATTAGGGA+AGG | 0.623587 | 4.4:+15170515 | MS.gene09009:CDS |
| CGTGCCAAGAGATGCAGGTG+TGG | 0.627217 | 4.4:+15170473 | MS.gene09009:CDS |
| AGGGCATAAAATGGAGCCAT+CGG | 0.628207 | 4.4:-15171519 | None:intergenic |
| GTGCAAGCTGAAAAGACGAA+CGG | 0.628607 | 4.4:+15173495 | MS.gene09009:CDS |
| TCAAAGTATATCCCAAAAGG+TGG | 0.630247 | 4.4:+15171907 | MS.gene09009:CDS |
| CTACTAGTGAGACCAACTGT+TGG | 0.631026 | 4.4:-15171572 | None:intergenic |
| CCTGGTGGTTGGAATGCTAG+AGG | 0.631226 | 4.4:+15170579 | MS.gene09009:CDS |
| GTGGGCCTTAAACCAACAGT+TGG | 0.632543 | 4.4:+15171560 | MS.gene09009:CDS |
| AGTTCTAAAAGGAATCTTGG+AGG | 0.634898 | 4.4:+15170281 | MS.gene09009:CDS |
| TGGAATGCTAGAGGTGGACA+AGG | 0.642036 | 4.4:+15170588 | MS.gene09009:CDS |
| GTGTAGTTCCAATTAGCCCA+AGG | 0.651600 | 4.4:+15171600 | MS.gene09009:CDS |
| TACACATTGGATGATCCTTG+TGG | 0.659008 | 4.4:+15171431 | MS.gene09009:CDS |
| TGTGCAGAATCCATACACAT+TGG | 0.673696 | 4.4:+15171418 | MS.gene09009:intron |
| AATCTGGTTACTGTGTCACT+TGG | 0.676515 | 4.4:+15171488 | MS.gene09009:CDS |
| GGTGGTTGGAATGCTAGAGG+TGG | 0.689775 | 4.4:+15170582 | MS.gene09009:CDS |
| AGGTCTAGTAAAGTTCCTGG+TGG | 0.700262 | 4.4:+15170564 | MS.gene09009:CDS |
| TCACTTGGTACTGAAACCGA+TGG | 0.716676 | 4.4:+15171503 | MS.gene09009:CDS |
| GATCCACTACTTGAACCACA+AGG | 0.767744 | 4.4:-15171446 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTTATTGTAAATGTAAAT+AGG | - | chr4.4:15172800-15172819 | None:intergenic | 15.0% |
| !! | TATAGTATAAATATCACATT+TGG | + | chr4.4:15172598-15172617 | MS.gene09009:intron | 15.0% |
| !!! | AGTAAATAATTTTTTTTTCG+AGG | + | chr4.4:15171302-15171321 | MS.gene09009:intron | 15.0% |
| !!! | TTTTAGGTATAATTGATTTT+GGG | + | chr4.4:15171064-15171083 | MS.gene09009:intron | 15.0% |
| !! | AACAATGTTATCAATTGATA+GGG | - | chr4.4:15173140-15173159 | None:intergenic | 20.0% |
| !! | AATACTAATCTATGTATATG+AGG | - | chr4.4:15172106-15172125 | None:intergenic | 20.0% |
| !! | AATTAAACTGTCCAAAATTT+GGG | + | chr4.4:15172698-15172717 | MS.gene09009:intron | 20.0% |
| !! | ACATTTACAATAAACTATGT+TGG | + | chr4.4:15172804-15172823 | MS.gene09009:intron | 20.0% |
| !! | ATAACATTGTTGAAATTATC+AGG | + | chr4.4:15173149-15173168 | MS.gene09009:intron | 20.0% |
| !! | GAATTGTTGTATAAAATTGT+AGG | + | chr4.4:15173443-15173462 | MS.gene09009:intron | 20.0% |
| !! | GACATAAAAAATGAGTAAAT+AGG | - | chr4.4:15171745-15171764 | None:intergenic | 20.0% |
| !! | GTTGAAAATTACAAATAAGA+TGG | + | chr4.4:15173812-15173831 | MS.gene09009:CDS | 20.0% |
| !! | TAGTAATTGTGTAACATTAA+TGG | + | chr4.4:15171781-15171800 | MS.gene09009:intron | 20.0% |
| !! | TATAAAATTGTAGGAGAAAA+TGG | + | chr4.4:15173452-15173471 | MS.gene09009:intron | 20.0% |
| !! | TGATTTACAATTAGGTAAAT+TGG | - | chr4.4:15170795-15170814 | None:intergenic | 20.0% |
| !! | TTATAGTTTACTACTTATTC+TGG | + | chr4.4:15170735-15170754 | MS.gene09009:intron | 20.0% |
| !!! | CAAAACTGATTTTTTGAAAT+CGG | + | chr4.4:15170879-15170898 | MS.gene09009:intron | 20.0% |
| !!! | CTTTTAGGTATAATTGATTT+TGG | + | chr4.4:15171063-15171082 | MS.gene09009:intron | 20.0% |
| !!! | TATAGTAGAAAGTATAAGAA+GGG | + | chr4.4:15172875-15172894 | MS.gene09009:intron | 20.0% |
| !!! | TCATTGTCTATTATTTTCTT+TGG | + | chr4.4:15172180-15172199 | MS.gene09009:intron | 20.0% |
| !!! | TTCTTTGTTGATTTACAATT+AGG | - | chr4.4:15170803-15170822 | None:intergenic | 20.0% |
| ! | AACGTGATTTGACTATAAAT+TGG | - | chr4.4:15171124-15171143 | None:intergenic | 25.0% |
| ! | ATGAATGATTCTTGAAAATG+AGG | + | chr4.4:15171373-15171392 | MS.gene09009:intron | 25.0% |
| ! | ATGCTAATAATAACATGTCT+TGG | + | chr4.4:15172372-15172391 | MS.gene09009:intron | 25.0% |
| ! | ATGTAACTAGTATAAGGAAT+TGG | - | chr4.4:15170107-15170126 | None:intergenic | 25.0% |
| ! | ATGTCAATAAGTTTGAGAAT+TGG | + | chr4.4:15171009-15171028 | MS.gene09009:intron | 25.0% |
| ! | ATTAAACTGTCCAAAATTTG+GGG | + | chr4.4:15172699-15172718 | MS.gene09009:intron | 25.0% |
| ! | CAACAATGTTATCAATTGAT+AGG | - | chr4.4:15173141-15173160 | None:intergenic | 25.0% |
| ! | CAATTAAACTGTCCAAAATT+TGG | + | chr4.4:15172697-15172716 | MS.gene09009:intron | 25.0% |
| ! | CATTATTGAATATGTCAAGA+TGG | + | chr4.4:15173541-15173560 | MS.gene09009:CDS | 25.0% |
| ! | GAATTTGAAGATTGATGTTA+AGG | + | chr4.4:15172826-15172845 | MS.gene09009:intron | 25.0% |
| ! | GATAATCAAGTCATTTCTTT+AGG | - | chr4.4:15171328-15171347 | None:intergenic | 25.0% |
| ! | TAAAGTTCCAATAAGAAGAA+GGG | - | chr4.4:15171351-15171370 | None:intergenic | 25.0% |
| ! | TAAGCAATTTCAATCAACTT+TGG | - | chr4.4:15173744-15173763 | None:intergenic | 25.0% |
| ! | TAATAATAAACAACTCCCAA+AGG | - | chr4.4:15172265-15172284 | None:intergenic | 25.0% |
| ! | TGATTTCTCCTATATAATTG+TGG | - | chr4.4:15172206-15172225 | None:intergenic | 25.0% |
| ! | TGGGAGTTGTTTATTATTAT+CGG | + | chr4.4:15172266-15172285 | MS.gene09009:intron | 25.0% |
| ! | TTTAGTTAGTTAGAAATCAG+AGG | + | chr4.4:15172959-15172978 | MS.gene09009:intron | 25.0% |
| !! | AAAAAATCAGTTTTGCCAAA+CGG | - | chr4.4:15170874-15170893 | None:intergenic | 25.0% |
| !! | CAATTTTTGTCTGTATAGTT+TGG | + | chr4.4:15170967-15170986 | MS.gene09009:intron | 25.0% |
| !! | CTACTTACTTAATTTGAGTT+TGG | + | chr4.4:15170626-15170645 | MS.gene09009:intron | 25.0% |
| !! | GTAATTACCTTAACGTTTTT+AGG | - | chr4.4:15172044-15172063 | None:intergenic | 25.0% |
| !! | GTATAGTAGAAAGTATAAGA+AGG | + | chr4.4:15172874-15172893 | MS.gene09009:intron | 25.0% |
| !! | TGAGGCATTATTAGAAAAAT+AGG | + | chr4.4:15171268-15171287 | MS.gene09009:intron | 25.0% |
| !! | TGTAATTTTCAACTTCCTAA+GGG | - | chr4.4:15173805-15173824 | None:intergenic | 25.0% |
| !! | TTACCATTTTGCAAATTCAA+TGG | + | chr4.4:15171679-15171698 | MS.gene09009:intron | 25.0% |
| !! | TTGTAATTTTCAACTTCCTA+AGG | - | chr4.4:15173806-15173825 | None:intergenic | 25.0% |
| !!! | AAGCTAGAAATTTAGCTTTT+AGG | + | chr4.4:15171048-15171067 | MS.gene09009:intron | 25.0% |
| !!! | CATATTTTTTTGACAAACCA+CGG | + | chr4.4:15172519-15172538 | MS.gene09009:intron | 25.0% |
| !!! | TCATGTGTTGATAACTTAAT+CGG | + | chr4.4:15172654-15172673 | MS.gene09009:intron | 25.0% |
| !!! | TTTGTATTTTGATTTGGTTG+AGG | - | chr4.4:15170257-15170276 | None:intergenic | 25.0% |
| AAAGTTCCAATAAGAAGAAG+GGG | - | chr4.4:15171350-15171369 | None:intergenic | 30.0% | |
| AATTTGCAAAATGGTAACAG+TGG | - | chr4.4:15171676-15171695 | None:intergenic | 30.0% | |
| AGGAGAATGTAACTAGTATA+AGG | - | chr4.4:15170113-15170132 | None:intergenic | 30.0% | |
| AGTCCATTGAATTTGCAAAA+TGG | - | chr4.4:15171685-15171704 | None:intergenic | 30.0% | |
| ATTGTGTAACATTAATGGTG+TGG | + | chr4.4:15171786-15171805 | MS.gene09009:intron | 30.0% | |
| ATTTGCAAAATGGTAACAGT+GGG | - | chr4.4:15171675-15171694 | None:intergenic | 30.0% | |
| CAAGTTGTCTTGATGTTAAT+TGG | - | chr4.4:15170224-15170243 | None:intergenic | 30.0% | |
| CTAAAGTTCCAATAAGAAGA+AGG | - | chr4.4:15171352-15171371 | None:intergenic | 30.0% | |
| GTGTTATCCTTAACCAAAAT+AGG | - | chr4.4:15170396-15170415 | None:intergenic | 30.0% | |
| TGACTATAAATTGGTGTGTT+TGG | - | chr4.4:15171115-15171134 | None:intergenic | 30.0% | |
| TTCAAAGCAATAGATTCACT+TGG | - | chr4.4:15173238-15173257 | None:intergenic | 30.0% | |
| TTCTTTGGCCACAATTATAT+AGG | + | chr4.4:15172195-15172214 | MS.gene09009:intron | 30.0% | |
| TTTGGACAGTTTAATTGTGT+TGG | - | chr4.4:15172694-15172713 | None:intergenic | 30.0% | |
| ! | ACAAATTTGGAATCAAACGT+AGG | + | chr4.4:15171173-15171192 | MS.gene09009:intron | 30.0% |
| ! | ATGTAAATAGGTCTGAAGTA+TGG | - | chr4.4:15172788-15172807 | None:intergenic | 30.0% |
| ! | GCTCAATTTCTAAAGAAAGA+CGG | + | chr4.4:15171934-15171953 | MS.gene09009:CDS | 30.0% |
| ! | GTAATTTTCAACTTCCTAAG+GGG | - | chr4.4:15173804-15173823 | None:intergenic | 30.0% |
| ! | TCTTGTAACTACTTCTTTTC+AGG | - | chr4.4:15172764-15172783 | None:intergenic | 30.0% |
| ! | TTGATGTTAATTGGTTTCTC+TGG | - | chr4.4:15170215-15170234 | None:intergenic | 30.0% |
| !! | ATACAAAACCCAGTTCTAAA+AGG | + | chr4.4:15170270-15170289 | MS.gene09009:CDS | 30.0% |
| !!! | AGCTAAATTTCTAGCTTTTG+CGG | - | chr4.4:15171045-15171064 | None:intergenic | 30.0% |
| !!! | ATTTGTTTTGGAGGTTTGAA+AGG | + | chr4.4:15173711-15173730 | MS.gene09009:CDS | 30.0% |
| !!! | CTGGGTTTTGTATTTTGATT+TGG | - | chr4.4:15170263-15170282 | None:intergenic | 30.0% |
| !!! | TGGAATACCTATTTTGGTTA+AGG | + | chr4.4:15170386-15170405 | MS.gene09009:CDS | 30.0% |
| !!! | TTAATGGTGTGGTTTTTTAC+AGG | + | chr4.4:15171797-15171816 | MS.gene09009:intron | 30.0% |
| !!! | TTTGTTTTGGAGGTTTGAAA+GGG | + | chr4.4:15173712-15173731 | MS.gene09009:CDS | 30.0% |
| !!! | TTTTTTACAGGCCAATTTGT+AGG | + | chr4.4:15171809-15171828 | MS.gene09009:intron | 30.0% |
| AAACACCAAGTTCTCTTTCA+AGG | + | chr4.4:15170358-15170377 | MS.gene09009:CDS | 35.0% | |
| AATAACCCAAACTCGATTCT+GGG | + | chr4.4:15171146-15171165 | MS.gene09009:intron | 35.0% | |
| AATATCAGTAGCAGCAAATC+TGG | + | chr4.4:15171472-15171491 | MS.gene09009:CDS | 35.0% | |
| AATTGATAGGGTTGTTCACT+GGG | - | chr4.4:15173128-15173147 | None:intergenic | 35.0% | |
| ACTCACACCTAAAAACGTTA+AGG | + | chr4.4:15172034-15172053 | MS.gene09009:CDS | 35.0% | |
| ATGCCTATAGACAATCCTTT+GGG | + | chr4.4:15172247-15172266 | MS.gene09009:intron | 35.0% | |
| ATGTCAAGATGGTCAGAAAA+TGG | + | chr4.4:15173552-15173571 | MS.gene09009:CDS | 35.0% | |
| CAATGAGAAACACCCAAAAT+TGG | + | chr4.4:15173342-15173361 | MS.gene09009:CDS | 35.0% | |
| CCTCATAAGTTAGCGAAAAA+GGG | - | chr4.4:15171253-15171272 | None:intergenic | 35.0% | |
| CCTCCAAAACAAATTCCAAA+TGG | - | chr4.4:15173705-15173724 | None:intergenic | 35.0% | |
| CTCATAAGTTAGCGAAAAAG+GGG | - | chr4.4:15171252-15171271 | None:intergenic | 35.0% | |
| GAAAGATTTAGTAGCTTCAC+CGG | + | chr4.4:15173291-15173310 | MS.gene09009:CDS | 35.0% | |
| GATAACTTAATCGGAAGAGT+AGG | + | chr4.4:15172663-15172682 | MS.gene09009:intron | 35.0% | |
| GATTACCAAAAACTGTCATC+AGG | - | chr4.4:15172500-15172519 | None:intergenic | 35.0% | |
| GATTATCCCCTTCTTCTTAT+TGG | + | chr4.4:15171341-15171360 | MS.gene09009:intron | 35.0% | |
| GCATCAAAGTATATCCCAAA+AGG | + | chr4.4:15171904-15171923 | MS.gene09009:CDS | 35.0% | |
| GTGAAGCTACTAAATCTTTC+AGG | - | chr4.4:15173291-15173310 | None:intergenic | 35.0% | |
| GTTGAAATTATCAGGCAAAG+AGG | + | chr4.4:15173157-15173176 | MS.gene09009:intron | 35.0% | |
| TAAGGATAACACTGCAACTA+AGG | + | chr4.4:15170404-15170423 | MS.gene09009:CDS | 35.0% | |
| TCAAAGTATATCCCAAAAGG+TGG | + | chr4.4:15171907-15171926 | MS.gene09009:CDS | 35.0% | |
| TCTGATACAGTCCTACAAAT+TGG | - | chr4.4:15171823-15171842 | None:intergenic | 35.0% | |
| TGTCAAGATGGTCAGAAAAT+GGG | + | chr4.4:15173553-15173572 | MS.gene09009:CDS | 35.0% | |
| TGTTAACGTATCAACTCTAC+TGG | - | chr4.4:15172448-15172467 | None:intergenic | 35.0% | |
| TTCCTTGATTGAGAATTCAC+TGG | - | chr4.4:15170163-15170182 | None:intergenic | 35.0% | |
| TTCTGGACTTCTTGTACATT+TGG | + | chr4.4:15170752-15170771 | MS.gene09009:intron | 35.0% | |
| TTGTAGGAGAAAATGGAGTA+TGG | + | chr4.4:15173459-15173478 | MS.gene09009:intron | 35.0% | |
| ! | ACACATATACCGACCAATTT+TGG | - | chr4.4:15173358-15173377 | None:intergenic | 35.0% |
| ! | ATGAACCTGATGACAGTTTT+TGG | + | chr4.4:15172492-15172511 | MS.gene09009:intron | 35.0% |
| ! | CACATATACCGACCAATTTT+GGG | - | chr4.4:15173357-15173376 | None:intergenic | 35.0% |
| ! | CTTAGCCTTTACTCAATCTT+AGG | - | chr4.4:15170848-15170867 | None:intergenic | 35.0% |
| ! | GTTGCATGGAATACCTATTT+TGG | + | chr4.4:15170380-15170399 | MS.gene09009:CDS | 35.0% |
| ! | TAGAAAGTATAAGAAGGGTG+TGG | + | chr4.4:15172880-15172899 | MS.gene09009:intron | 35.0% |
| ! | TATACCAAACGTCAAGTTGT+TGG | - | chr4.4:15172292-15172311 | None:intergenic | 35.0% |
| ! | TTTAAAACCTGTGCAACACA+TGG | + | chr4.4:15172124-15172143 | MS.gene09009:intron | 35.0% |
| !! | AAAGCTGGTGCTATCATATT+AGG | + | chr4.4:15170510-15170529 | MS.gene09009:CDS | 35.0% |
| !! | AAGCTGGTGCTATCATATTA+GGG | + | chr4.4:15170511-15170530 | MS.gene09009:CDS | 35.0% |
| !! | AGTTCTAAAAGGAATCTTGG+AGG | + | chr4.4:15170281-15170300 | MS.gene09009:CDS | 35.0% |
| !! | GAGCCATTTGGAATTTGTTT+TGG | + | chr4.4:15173699-15173718 | MS.gene09009:CDS | 35.0% |
| !! | TTTTGGGTGTTTCTCATTGA+AGG | - | chr4.4:15173341-15173360 | None:intergenic | 35.0% |
| !!! | CCAAGATTCCTTTTAGAACT+GGG | - | chr4.4:15170281-15170300 | None:intergenic | 35.0% |
| !!! | CCATTTGGAATTTGTTTTGG+AGG | + | chr4.4:15173702-15173721 | MS.gene09009:CDS | 35.0% |
| !!! | TCCAAGATTCCTTTTAGAAC+TGG | - | chr4.4:15170282-15170301 | None:intergenic | 35.0% |
| AATAGCCAGTATGTGGCTAA+AGG | - | chr4.4:15173634-15173653 | None:intergenic | 40.0% | |
| ACTCCCAAAGGATTGTCTAT+AGG | - | chr4.4:15172253-15172272 | None:intergenic | 40.0% | |
| ACTGTCCAAAATTTGGGGAA+TGG | + | chr4.4:15172704-15172723 | MS.gene09009:intron | 40.0% | |
| AGTTCTCTTTCAAGGTTGCA+TGG | + | chr4.4:15170366-15170385 | MS.gene09009:CDS | 40.0% | |
| ATAAAGCTGACCAAGAGAGA+AGG | + | chr4.4:15170331-15170350 | MS.gene09009:CDS | 40.0% | |
| ATATGTAGCTGAATCAGAGC+TGG | + | chr4.4:15170822-15170841 | MS.gene09009:intron | 40.0% | |
| ATGTGGCTAAAGGACCAAAA+AGG | - | chr4.4:15173624-15173643 | None:intergenic | 40.0% | |
| CAAGGATCATCCAATGTGTA+TGG | - | chr4.4:15171431-15171450 | None:intergenic | 40.0% | |
| CAATTGATAGGGTTGTTCAC+TGG | - | chr4.4:15173129-15173148 | None:intergenic | 40.0% | |
| CATGGCTCTTCATTTAACAC+AGG | - | chr4.4:15171221-15171240 | None:intergenic | 40.0% | |
| CTACTATACGCCTGCTTAAT+GGG | - | chr4.4:15172863-15172882 | None:intergenic | 40.0% | |
| CTGTGTTAAATGAAGAGCCA+TGG | + | chr4.4:15171219-15171238 | MS.gene09009:intron | 40.0% | |
| GAATAACCCAAACTCGATTC+TGG | + | chr4.4:15171145-15171164 | MS.gene09009:intron | 40.0% | |
| GACCGACAGTTACAATTTCA+CGG | + | chr4.4:15171710-15171729 | MS.gene09009:intron | 40.0% | |
| GAGAAACACCCAAAATTGGT+CGG | + | chr4.4:15173346-15173365 | MS.gene09009:intron | 40.0% | |
| GATAGATTGAACACTACTGC+TGG | + | chr4.4:15170426-15170445 | MS.gene09009:CDS | 40.0% | |
| GATGCCTATAGACAATCCTT+TGG | + | chr4.4:15172246-15172265 | MS.gene09009:intron | 40.0% | |
| GCCTCATAAGTTAGCGAAAA+AGG | - | chr4.4:15171254-15171273 | None:intergenic | 40.0% | |
| GGACTAAGAGGAAAGAGATT+AGG | + | chr4.4:15171955-15171974 | MS.gene09009:CDS | 40.0% | |
| GTCCGTGAAATTGTAACTGT+CGG | - | chr4.4:15171715-15171734 | None:intergenic | 40.0% | |
| GTGAGATACTACTACGAGTT+TGG | + | chr4.4:15171982-15172001 | MS.gene09009:CDS | 40.0% | |
| GTTACCAAGTTAAGGAAAGC+TGG | + | chr4.4:15170495-15170514 | MS.gene09009:CDS | 40.0% | |
| GTTCATTCAAGATTGACGAC+AGG | - | chr4.4:15172478-15172497 | None:intergenic | 40.0% | |
| GTTCCAGCAGGATATGAAAA+GGG | + | chr4.4:15173675-15173694 | MS.gene09009:CDS | 40.0% | |
| TAAAGCTGACCAAGAGAGAA+GGG | + | chr4.4:15170332-15170351 | MS.gene09009:CDS | 40.0% | |
| TACACATTGGATGATCCTTG+TGG | + | chr4.4:15171431-15171450 | MS.gene09009:CDS | 40.0% | |
| TACAGGTCTAGTAAAGTTCC+TGG | + | chr4.4:15170561-15170580 | MS.gene09009:CDS | 40.0% | |
| TATCTAACCATGTGTTGCAC+AGG | - | chr4.4:15172134-15172153 | None:intergenic | 40.0% | |
| TATGAAAAGGGTGAGCCATT+TGG | + | chr4.4:15173687-15173706 | MS.gene09009:CDS | 40.0% | |
| TCATTTAACATGATCAGCCG+TGG | - | chr4.4:15172539-15172558 | None:intergenic | 40.0% | |
| TCTACTATACGCCTGCTTAA+TGG | - | chr4.4:15172864-15172883 | None:intergenic | 40.0% | |
| TGCAACCTTGAAAGAGAACT+TGG | - | chr4.4:15170366-15170385 | None:intergenic | 40.0% | |
| TGTGCAGAATCCATACACAT+TGG | + | chr4.4:15171418-15171437 | MS.gene09009:intron | 40.0% | |
| TGTGTTCTTGAAACCATAGC+AGG | + | chr4.4:15171850-15171869 | MS.gene09009:CDS | 40.0% | |
| TGTTCCAGCAGGATATGAAA+AGG | + | chr4.4:15173674-15173693 | MS.gene09009:CDS | 40.0% | |
| ! | AAAGTATAAGAAGGGTGTGG+AGG | + | chr4.4:15172883-15172902 | MS.gene09009:intron | 40.0% |
| ! | AATCTGGTTACTGTGTCACT+TGG | + | chr4.4:15171488-15171507 | MS.gene09009:CDS | 40.0% |
| ! | AATTCACTGGCCAAGGTTTT+TGG | - | chr4.4:15170150-15170169 | None:intergenic | 40.0% |
| ! | AATTGAGCATAGCCACCTTT+TGG | - | chr4.4:15171922-15171941 | None:intergenic | 40.0% |
| ! | ATGCTGTAGTGACACCTTTT+TGG | + | chr4.4:15173607-15173626 | MS.gene09009:CDS | 40.0% |
| ! | ATTGAGCATAGCCACCTTTT+GGG | - | chr4.4:15171921-15171940 | None:intergenic | 40.0% |
| ! | ATTTTCAACTTCCTAAGGGG+AGG | - | chr4.4:15173801-15173820 | None:intergenic | 40.0% |
| ! | CTGAAAAGACGAACGGTTTT+GGG | + | chr4.4:15173502-15173521 | MS.gene09009:CDS | 40.0% |
| ! | GATTCTGGGAGGTACAAATT+TGG | + | chr4.4:15171160-15171179 | MS.gene09009:intron | 40.0% |
| ! | TGTCACCATTCCCCAAATTT+TGG | - | chr4.4:15172712-15172731 | None:intergenic | 40.0% |
| ! | TTTAGCCACATACTGGCTAT+TGG | + | chr4.4:15173633-15173652 | MS.gene09009:CDS | 40.0% |
| !! | CCCAGTTCTAAAAGGAATCT+TGG | + | chr4.4:15170278-15170297 | MS.gene09009:CDS | 40.0% |
| !! | CCCTTTTTCGCTAACTTATG+AGG | + | chr4.4:15171250-15171269 | MS.gene09009:intron | 40.0% |
| !! | CTAAAGAAAGACGGACTAAG+AGG | + | chr4.4:15171943-15171962 | MS.gene09009:CDS | 40.0% |
| !! | TACTTCTTTTCAGGAGCGAT+AGG | - | chr4.4:15172755-15172774 | None:intergenic | 40.0% |
| !! | TGAGACCAACTGTTGGTTTA+AGG | - | chr4.4:15171568-15171587 | None:intergenic | 40.0% |
| !! | TGGTGCTATCATATTAGGGA+AGG | + | chr4.4:15170515-15170534 | MS.gene09009:CDS | 40.0% |
| !! | TTGTGGTTCAAGTAGTGGAT+CGG | + | chr4.4:15171448-15171467 | MS.gene09009:CDS | 40.0% |
| !! | TTTTGGTAGCAGTAGCATAG+AGG | - | chr4.4:15170133-15170152 | None:intergenic | 40.0% |
| !!! | AGGCATCGACACTTTTGATA+AGG | + | chr4.4:15171870-15171889 | MS.gene09009:CDS | 40.0% |
| !!! | GTGTTTTTTCCCTTCTCTCT+TGG | - | chr4.4:15170344-15170363 | None:intergenic | 40.0% |
| AACCTCCAATAGCCAGTATG+TGG | - | chr4.4:15173641-15173660 | None:intergenic | 45.0% | |
| ACATCTGCCAAACTGTTCAC+CGG | - | chr4.4:15173313-15173332 | None:intergenic | 45.0% | |
| AGCACCAGCTTTCCTTAACT+TGG | - | chr4.4:15170502-15170521 | None:intergenic | 45.0% | |
| AGGGCATAAAATGGAGCCAT+CGG | - | chr4.4:15171522-15171541 | None:intergenic | 45.0% | |
| AGGTCTAGTAAAGTTCCTGG+TGG | + | chr4.4:15170564-15170583 | MS.gene09009:CDS | 45.0% | |
| ATAGGGTTGTTCACTGGGAA+TGG | - | chr4.4:15173123-15173142 | None:intergenic | 45.0% | |
| ATGTGACCACTCACTCAAAG+TGG | - | chr4.4:15170541-15170560 | None:intergenic | 45.0% | |
| CAGCTTGCACCAATACATCT+TGG | - | chr4.4:15173485-15173504 | None:intergenic | 45.0% | |
| CAGGTGTGGTTACCAAGTTA+AGG | + | chr4.4:15170487-15170506 | MS.gene09009:CDS | 45.0% | |
| CTACTAGTGAGACCAACTGT+TGG | - | chr4.4:15171575-15171594 | None:intergenic | 45.0% | |
| CTAGTAAAGTTCCTGGTGGT+TGG | + | chr4.4:15170568-15170587 | MS.gene09009:CDS | 45.0% | |
| GATCCACTACTTGAACCACA+AGG | - | chr4.4:15171449-15171468 | None:intergenic | 45.0% | |
| GATCCTTGTGGTTCAAGTAG+TGG | + | chr4.4:15171443-15171462 | MS.gene09009:CDS | 45.0% | |
| GATTGAGAATTCACTGGCCA+AGG | - | chr4.4:15170157-15170176 | None:intergenic | 45.0% | |
| GCTACTGCTACCAAAAACCT+TGG | + | chr4.4:15170137-15170156 | MS.gene09009:CDS | 45.0% | |
| GGAGTATGGCCAAGATGTAT+TGG | + | chr4.4:15173473-15173492 | MS.gene09009:CDS | 45.0% | |
| GGCCAGTGAATTCTCAATCA+AGG | + | chr4.4:15170158-15170177 | MS.gene09009:CDS | 45.0% | |
| GTAAAGGCTAAGTGTCCGTT+TGG | + | chr4.4:15170856-15170875 | MS.gene09009:intron | 45.0% | |
| GTGCAAGCTGAAAAGACGAA+CGG | + | chr4.4:15173495-15173514 | MS.gene09009:CDS | 45.0% | |
| GTGTAGTTCCAATTAGCCCA+AGG | + | chr4.4:15171600-15171619 | MS.gene09009:CDS | 45.0% | |
| TACCTCCCAGAATCGAGTTT+GGG | - | chr4.4:15171154-15171173 | None:intergenic | 45.0% | |
| TAGGGTTGTTCACTGGGAAT+GGG | - | chr4.4:15173122-15173141 | None:intergenic | 45.0% | |
| TCTGCTTGTGCTAATGCATC+TGG | - | chr4.4:15170312-15170331 | None:intergenic | 45.0% | |
| TGAGTGAGTGGTCACATTAC+AGG | + | chr4.4:15170544-15170563 | MS.gene09009:CDS | 45.0% | |
| TTGGTCCTTTAGCCACATAC+TGG | + | chr4.4:15173626-15173645 | MS.gene09009:CDS | 45.0% | |
| ! | AAGGCCTGAAGGGCATAAAA+TGG | - | chr4.4:15171531-15171550 | None:intergenic | 45.0% |
| ! | GCTGAAAAGACGAACGGTTT+TGG | + | chr4.4:15173501-15173520 | MS.gene09009:CDS | 45.0% |
| ! | GCTGGCCTAAGATTGAGTAA+AGG | + | chr4.4:15170840-15170859 | MS.gene09009:intron | 45.0% |
| ! | TCACCCTTTTCATATCCTGC+TGG | - | chr4.4:15173681-15173700 | None:intergenic | 45.0% |
| ! | TCACTTGGTACTGAAACCGA+TGG | + | chr4.4:15171503-15171522 | MS.gene09009:CDS | 45.0% |
| !! | AAAAGTGTCGATGCCTGCTA+TGG | - | chr4.4:15171866-15171885 | None:intergenic | 45.0% |
| AACCCAAACTCGATTCTGGG+AGG | + | chr4.4:15171149-15171168 | MS.gene09009:intron | 50.0% | |
| ACCACTGAGTTAAGGCCTGA+AGG | - | chr4.4:15171542-15171561 | None:intergenic | 50.0% | |
| ACCCAACTGTGTCTTGCCTT+GGG | - | chr4.4:15171619-15171638 | None:intergenic | 50.0% | |
| AGCTTCACCGGTGAACAGTT+TGG | + | chr4.4:15173303-15173322 | MS.gene09009:CDS | 50.0% | |
| CCACTGAGTTAAGGCCTGAA+GGG | - | chr4.4:15171541-15171560 | None:intergenic | 50.0% | |
| CTATACGCCTGCTTAATGGG+AGG | - | chr4.4:15172860-15172879 | None:intergenic | 50.0% | |
| CTGGCTATTGGAGGTTATCC+TGG | + | chr4.4:15173645-15173664 | MS.gene09009:CDS | 50.0% | |
| GAAAAAGGGGTCAGTCTCCA+TGG | - | chr4.4:15171239-15171258 | None:intergenic | 50.0% | |
| GTAACCACACCTGCATCTCT+TGG | - | chr4.4:15170480-15170499 | None:intergenic | 50.0% | |
| GTACCTCCCAGAATCGAGTT+TGG | - | chr4.4:15171155-15171174 | None:intergenic | 50.0% | |
| GTGGGCCTTAAACCAACAGT+TGG | + | chr4.4:15171560-15171579 | MS.gene09009:CDS | 50.0% | |
| GTGTCTTGCCTTGGGCTAAT+TGG | - | chr4.4:15171611-15171630 | None:intergenic | 50.0% | |
| TAAGGCCCACCACTGAGTTA+AGG | - | chr4.4:15171550-15171569 | None:intergenic | 50.0% | |
| TACCCAACTGTGTCTTGCCT+TGG | - | chr4.4:15171620-15171639 | None:intergenic | 50.0% | |
| TCAGGCCTTAACTCAGTGGT+GGG | + | chr4.4:15171542-15171561 | MS.gene09009:CDS | 50.0% | |
| TCGGCCAACAACTTGACGTT+TGG | + | chr4.4:15172285-15172304 | MS.gene09009:intron | 50.0% | |
| TGCTAGAGGTGGACAAGGAA+AGG | + | chr4.4:15170593-15170612 | MS.gene09009:CDS | 50.0% | |
| TGGAATGCTAGAGGTGGACA+AGG | + | chr4.4:15170588-15170607 | MS.gene09009:CDS | 50.0% | |
| TGTGGAGGCTGATACTCATG+TGG | + | chr4.4:15172898-15172917 | MS.gene09009:intron | 50.0% | |
| TTCAACTTCCTAAGGGGAGG+TGG | - | chr4.4:15173798-15173817 | None:intergenic | 50.0% | |
| TTCAGGCCTTAACTCAGTGG+TGG | + | chr4.4:15171541-15171560 | MS.gene09009:CDS | 50.0% | |
| ! | AGCCACATACTGGCTATTGG+AGG | + | chr4.4:15173636-15173655 | MS.gene09009:CDS | 50.0% |
| ! | GGCTCCATTTTATGCCCTTC+AGG | + | chr4.4:15171524-15171543 | MS.gene09009:CDS | 50.0% |
| ! | GTTGGTCTCACTAGTAGAGC+AGG | + | chr4.4:15171578-15171597 | MS.gene09009:CDS | 50.0% |
| !! | CAGGCAAAGAGGTGCAGTTT+TGG | + | chr4.4:15173168-15173187 | MS.gene09009:intron | 50.0% |
| !! | GCTGGCTCTTTTGCACTTCT+TGG | + | chr4.4:15170444-15170463 | MS.gene09009:CDS | 50.0% |
| ACAGTTGGGTAAGCACGCTC+GGG | + | chr4.4:15171629-15171648 | MS.gene09009:intron | 55.0% | |
| AGCCCAAGGCAAGACACAGT+TGG | + | chr4.4:15171614-15171633 | MS.gene09009:CDS | 55.0% | |
| CACAGTTGGGTAAGCACGCT+CGG | + | chr4.4:15171628-15171647 | MS.gene09009:intron | 55.0% | |
| CCCTTCAGGCCTTAACTCAG+TGG | + | chr4.4:15171538-15171557 | MS.gene09009:CDS | 55.0% | |
| CCTCTAGCATTCCAACCACC+AGG | - | chr4.4:15170582-15170601 | None:intergenic | 55.0% | |
| CCTGGTGGTTGGAATGCTAG+AGG | + | chr4.4:15170579-15170598 | MS.gene09009:CDS | 55.0% | |
| GCCCAAGGCAAGACACAGTT+GGG | + | chr4.4:15171615-15171634 | MS.gene09009:CDS | 55.0% | |
| GCGAAGACCTCCCATTAAGC+AGG | + | chr4.4:15172850-15172869 | MS.gene09009:intron | 55.0% | |
| GGTGGTTGGAATGCTAGAGG+TGG | + | chr4.4:15170582-15170601 | MS.gene09009:CDS | 55.0% | |
| TCAGAAAGCCACCTCCCCTT+AGG | + | chr4.4:15173787-15173806 | MS.gene09009:CDS | 55.0% | |
| TCAGTCGTGCCAAGAGATGC+AGG | + | chr4.4:15170468-15170487 | MS.gene09009:CDS | 55.0% | |
| ! | GGAAGGCCACTTTGAGTGAG+TGG | + | chr4.4:15170532-15170551 | MS.gene09009:CDS | 55.0% |
| CCTGCTGGAACACTCACTCC+AGG | - | chr4.4:15173666-15173685 | None:intergenic | 60.0% | |
| CCTGGAGTGAGTGTTCCAGC+AGG | + | chr4.4:15173663-15173682 | MS.gene09009:CDS | 60.0% | |
| CGTGCCAAGAGATGCAGGTG+TGG | + | chr4.4:15170473-15170492 | MS.gene09009:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 15170069 | 15173854 | 15170069 | ID=MS.gene09009 |
| chr4.4 | mRNA | 15170069 | 15173854 | 15170069 | ID=MS.gene09009.t1;Parent=MS.gene09009 |
| chr4.4 | exon | 15170069 | 15170614 | 15170069 | ID=MS.gene09009.t1.exon1;Parent=MS.gene09009.t1 |
| chr4.4 | CDS | 15170069 | 15170614 | 15170069 | ID=cds.MS.gene09009.t1;Parent=MS.gene09009.t1 |
| chr4.4 | exon | 15171425 | 15171636 | 15171425 | ID=MS.gene09009.t1.exon2;Parent=MS.gene09009.t1 |
| chr4.4 | CDS | 15171425 | 15171636 | 15171425 | ID=cds.MS.gene09009.t1;Parent=MS.gene09009.t1 |
| chr4.4 | exon | 15171819 | 15172055 | 15171819 | ID=MS.gene09009.t1.exon3;Parent=MS.gene09009.t1 |
| chr4.4 | CDS | 15171819 | 15172055 | 15171819 | ID=cds.MS.gene09009.t1;Parent=MS.gene09009.t1 |
| chr4.4 | exon | 15173171 | 15173363 | 15173171 | ID=MS.gene09009.t1.exon4;Parent=MS.gene09009.t1 |
| chr4.4 | CDS | 15173171 | 15173363 | 15173171 | ID=cds.MS.gene09009.t1;Parent=MS.gene09009.t1 |
| chr4.4 | exon | 15173465 | 15173854 | 15173465 | ID=MS.gene09009.t1.exon5;Parent=MS.gene09009.t1 |
| chr4.4 | CDS | 15173465 | 15173854 | 15173465 | ID=cds.MS.gene09009.t1;Parent=MS.gene09009.t1 |
| Gene Sequence |
| Protein sequence |
