Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09437.t1 | XP_003602146.1 | 94.3 | 333 | 19 | 0 | 1 | 333 | 34 | 366 | 6.10E-184 | 653.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09437.t1 | Q84VY3 | 71.2 | 337 | 93 | 2 | 1 | 333 | 55 | 391 | 6.5e-142 | 505.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09437.t1 | G7J653 | 94.3 | 333 | 19 | 0 | 1 | 333 | 34 | 366 | 4.4e-184 | 653.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene09437 | 0.814684 | 1.36E-51 | -1.69E-46 |
| MS.gene050298 | MS.gene09437 | 0.856022 | 4.26E-62 | -1.69E-46 |
| MS.gene050563 | MS.gene09437 | 0.835667 | 1.47E-56 | -1.69E-46 |
| MS.gene050584 | MS.gene09437 | 0.827896 | 1.21E-54 | -1.69E-46 |
| MS.gene050585 | MS.gene09437 | 0.821962 | 3.05E-53 | -1.69E-46 |
| MS.gene050587 | MS.gene09437 | 0.85471 | 1.03E-61 | -1.69E-46 |
| MS.gene05143 | MS.gene09437 | 0.809558 | 1.78E-50 | -1.69E-46 |
| MS.gene051789 | MS.gene09437 | 0.800847 | 1.19E-48 | -1.69E-46 |
| MS.gene052142 | MS.gene09437 | 0.858556 | 7.60E-63 | -1.69E-46 |
| MS.gene053383 | MS.gene09437 | 0.851047 | 1.14E-60 | -1.69E-46 |
| MS.gene05456 | MS.gene09437 | 0.862578 | 4.59E-64 | -1.69E-46 |
| MS.gene055359 | MS.gene09437 | 0.804861 | 1.76E-49 | -1.69E-46 |
| MS.gene058918 | MS.gene09437 | 0.807441 | 5.05E-50 | -1.69E-46 |
| MS.gene059006 | MS.gene09437 | 0.81613 | 6.48E-52 | -1.69E-46 |
| MS.gene059768 | MS.gene09437 | 0.83301 | 6.82E-56 | -1.69E-46 |
| MS.gene060691 | MS.gene09437 | 0.849609 | 2.90E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09437.t1 | MTR_3g090100 | 94.294 | 333 | 19 | 0 | 1 | 333 | 34 | 366 | 0.0 | 662 |
| MS.gene09437.t1 | MTR_3g090020 | 90.991 | 333 | 30 | 0 | 1 | 333 | 34 | 366 | 0.0 | 636 |
| MS.gene09437.t1 | MTR_3g089025 | 82.583 | 333 | 58 | 0 | 1 | 333 | 37 | 369 | 0.0 | 579 |
| MS.gene09437.t1 | MTR_3g090010 | 79.758 | 331 | 67 | 0 | 1 | 331 | 38 | 368 | 0.0 | 562 |
| MS.gene09437.t1 | MTR_1g029150 | 75.749 | 334 | 78 | 1 | 1 | 331 | 55 | 388 | 0.0 | 542 |
| MS.gene09437.t1 | MTR_5g024130 | 66.867 | 332 | 107 | 2 | 1 | 331 | 62 | 391 | 3.83e-169 | 476 |
| MS.gene09437.t1 | MTR_4g087440 | 66.867 | 332 | 107 | 2 | 1 | 331 | 62 | 391 | 5.49e-169 | 476 |
| MS.gene09437.t1 | MTR_3g090110 | 50.847 | 118 | 35 | 1 | 177 | 294 | 1 | 95 | 1.10e-32 | 117 |
| MS.gene09437.t1 | MTR_3g089980 | 59.184 | 98 | 27 | 1 | 197 | 294 | 6 | 90 | 2.32e-29 | 108 |
| MS.gene09437.t1 | MTR_3g089973 | 40.541 | 148 | 44 | 3 | 177 | 324 | 1 | 104 | 2.59e-20 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09437.t1 | AT1G43800 | 70.920 | 337 | 94 | 1 | 1 | 333 | 55 | 391 | 0.0 | 512 |
| MS.gene09437.t1 | AT3G02630 | 65.766 | 333 | 110 | 2 | 1 | 331 | 64 | 394 | 2.37e-166 | 469 |
| MS.gene09437.t1 | AT5G16240 | 65.165 | 333 | 112 | 2 | 1 | 331 | 62 | 392 | 2.66e-164 | 464 |
| MS.gene09437.t1 | AT2G43710 | 63.473 | 334 | 119 | 2 | 1 | 333 | 70 | 401 | 2.97e-160 | 454 |
| MS.gene09437.t1 | AT2G43710 | 63.473 | 334 | 119 | 2 | 1 | 333 | 70 | 401 | 3.65e-160 | 453 |
| MS.gene09437.t1 | AT3G02610 | 62.832 | 339 | 119 | 3 | 1 | 333 | 74 | 411 | 4.89e-160 | 454 |
| MS.gene09437.t1 | AT3G02610 | 62.832 | 339 | 119 | 3 | 1 | 333 | 76 | 413 | 5.41e-160 | 453 |
| MS.gene09437.t1 | AT5G16230 | 62.575 | 334 | 120 | 3 | 4 | 333 | 69 | 401 | 2.83e-158 | 449 |
| MS.gene09437.t1 | AT3G02620 | 61.357 | 339 | 124 | 3 | 1 | 333 | 69 | 406 | 7.10e-157 | 445 |
| MS.gene09437.t1 | AT3G02620 | 61.357 | 339 | 124 | 3 | 1 | 333 | 66 | 403 | 7.30e-157 | 445 |
| MS.gene09437.t1 | AT5G16230 | 62.270 | 326 | 118 | 3 | 12 | 333 | 1 | 325 | 2.07e-154 | 436 |
| MS.gene09437.t1 | AT3G02620 | 61.585 | 328 | 119 | 3 | 12 | 333 | 1 | 327 | 1.19e-152 | 432 |
Find 82 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATGATTATCTTGTGGTTT+TGG | 0.263671 | 6.4:+23052014 | MS.gene09437:CDS |
| AATCTTGCGATGCATCATTT+TGG | 0.286538 | 6.4:-23053148 | None:intergenic |
| CCAACTTGTTTATCCATGTT+TGG | 0.336928 | 6.4:-23052074 | None:intergenic |
| GTCTCACACCATGGGCTATA+TGG | 0.350432 | 6.4:+23052124 | MS.gene09437:CDS |
| CTCTCAGGGCCTGCACTTGA+TGG | 0.353548 | 6.4:-23051972 | None:intergenic |
| TGCACCTAGATTAAGAAAAC+TGG | 0.364017 | 6.4:+23053371 | MS.gene09437:CDS |
| GGGCTATATGGTCACGCTCT+TGG | 0.370720 | 6.4:+23052136 | MS.gene09437:CDS |
| TGCCAGCTCCAATCAAATAT+TGG | 0.374430 | 6.4:-23052248 | None:intergenic |
| TGTTCAAATCACTAGAGAAA+TGG | 0.378630 | 6.4:+23051851 | MS.gene09437:CDS |
| CTTGATTAGACGATGGAGAT+TGG | 0.392791 | 6.4:+23053290 | MS.gene09437:CDS |
| GTTCAAATCACTAGAGAAAT+GGG | 0.399384 | 6.4:+23051852 | MS.gene09437:CDS |
| AAGACTATCCAATATTTGAT+TGG | 0.400329 | 6.4:+23052240 | MS.gene09437:CDS |
| GCTCAGCCGTTCGATCTCTC+AGG | 0.408301 | 6.4:-23051987 | None:intergenic |
| GGCTGCCAGCATTCCTCCAC+AGG | 0.422913 | 6.4:-23051904 | None:intergenic |
| GTGTACACAAAACCCATGTA+TGG | 0.438769 | 6.4:-23052934 | None:intergenic |
| AGATCAATCACAAATTCTCT+TGG | 0.444851 | 6.4:+23053421 | MS.gene09437:CDS |
| GATGGAGTTGGCGACGAGAC+TGG | 0.447459 | 6.4:+23052096 | MS.gene09437:CDS |
| TGGAGATTGGAGAAGATTGA+GGG | 0.448075 | 6.4:+23053303 | MS.gene09437:CDS |
| TCTGCAGTGGCACAACGTAT+TGG | 0.460018 | 6.4:+23053228 | MS.gene09437:CDS |
| ATCCAATATTTGATTGGAGC+TGG | 0.463614 | 6.4:+23052246 | MS.gene09437:CDS |
| AAACTGGAAGAGCGTCTTGA+TGG | 0.465202 | 6.4:+23053387 | MS.gene09437:CDS |
| TACCGAAAACAACCCATACA+TGG | 0.467155 | 6.4:+23052921 | MS.gene09437:CDS |
| AGTTGATCCCACCGAGGCTA+TGG | 0.482931 | 6.4:+23053116 | MS.gene09437:CDS |
| ATGGAGATTGGAGAAGATTG+AGG | 0.484391 | 6.4:+23053302 | MS.gene09437:CDS |
| GGCTATGGCCACCATAGCCT+CGG | 0.489653 | 6.4:-23053127 | None:intergenic |
| TTCACAAAGTGTGTTGCCAT+TGG | 0.492726 | 6.4:+23051876 | MS.gene09437:CDS |
| AAAACCACAAGATAATCATC+TGG | 0.498146 | 6.4:-23052012 | None:intergenic |
| TTTATCCATGTTTGGTACGT+AGG | 0.501588 | 6.4:-23052066 | None:intergenic |
| TCTCTTTAGCCAACCTACCT+AGG | 0.503420 | 6.4:-23052996 | None:intergenic |
| CTCTCACTTGCACGCATATG+CGG | 0.504929 | 6.4:+23053027 | MS.gene09437:CDS |
| GTACGTAGGCAATGCTTCCT+CGG | 0.510676 | 6.4:-23052052 | None:intergenic |
| TCTCACTTGCACGCATATGC+GGG | 0.524777 | 6.4:+23053028 | MS.gene09437:CDS |
| GCTTCCAGATGATTATCTTG+TGG | 0.527931 | 6.4:+23052008 | MS.gene09437:CDS |
| CCCGCTCACTTGATGCATGA+TGG | 0.529067 | 6.4:+23053177 | MS.gene09437:CDS |
| AACTGGAAGAGCGTCTTGAT+GGG | 0.529372 | 6.4:+23053388 | MS.gene09437:CDS |
| CCAAACATGGATAAACAAGT+TGG | 0.530351 | 6.4:+23052074 | MS.gene09437:CDS |
| AAAACTTATCTATATCTCTC+CGG | 0.537755 | 6.4:+23052192 | MS.gene09437:CDS |
| CATTGCCTACGTACCAAACA+TGG | 0.538689 | 6.4:+23052061 | MS.gene09437:CDS |
| ATATTTGATTGGAGCTGGCA+TGG | 0.538813 | 6.4:+23052251 | MS.gene09437:CDS |
| AAATGTGGCTCGCTCTTGAA+AGG | 0.540932 | 6.4:-23052959 | None:intergenic |
| TCGGAAGGTAGTGATGAGTC+TGG | 0.541807 | 6.4:-23051940 | None:intergenic |
| TCAAACCTGTGGAGGAATGC+TGG | 0.543810 | 6.4:+23051899 | MS.gene09437:CDS |
| CCATCATGCATCAAGTGAGC+GGG | 0.549039 | 6.4:-23053177 | None:intergenic |
| TCCTCCACAGGTTTGACCAA+TGG | 0.550904 | 6.4:-23051892 | None:intergenic |
| ATAAACAAGTTGGATGGAGT+TGG | 0.559959 | 6.4:+23052084 | MS.gene09437:CDS |
| CGCATATGCGTGCAAGTGAG+AGG | 0.561577 | 6.4:-23053026 | None:intergenic |
| TGAATTCATCCATCAAGTGC+AGG | 0.565376 | 6.4:+23051963 | MS.gene09437:CDS |
| TATGGCCACCATAGCCTCGG+TGG | 0.570103 | 6.4:-23053124 | None:intergenic |
| ACATGGATAAACAAGTTGGA+TGG | 0.572710 | 6.4:+23052078 | MS.gene09437:CDS |
| ATTGAGGGTTTGACAAGCGA+AGG | 0.578019 | 6.4:+23053318 | MS.gene09437:CDS |
| CTCAGCCGTTCGATCTCTCA+GGG | 0.579284 | 6.4:-23051986 | None:intergenic |
| TTGTTCATGGTGTAGGATGT+GGG | 0.582554 | 6.4:+23052898 | MS.gene09437:intron |
| TGTCACACGGCAACCTAGGT+AGG | 0.586115 | 6.4:+23052983 | MS.gene09437:CDS |
| CATGCACATATCAACTCGAC+CGG | 0.587049 | 6.4:-23052211 | None:intergenic |
| TGATCCCACCGAGGCTATGG+TGG | 0.588287 | 6.4:+23053119 | MS.gene09437:CDS |
| TGGTTCAAGTCTCACACCAT+GGG | 0.600203 | 6.4:+23052116 | MS.gene09437:CDS |
| TTTGTGTCACACGGCAACCT+AGG | 0.600519 | 6.4:+23052979 | MS.gene09437:CDS |
| TAGAGTTCTTGATTAGACGA+TGG | 0.605110 | 6.4:+23053283 | MS.gene09437:CDS |
| TCCATCATGCATCAAGTGAG+CGG | 0.608659 | 6.4:-23053178 | None:intergenic |
| TGATGGATGAATTCATCGGA+AGG | 0.608704 | 6.4:-23051955 | None:intergenic |
| CTGGTTCAAGTCTCACACCA+TGG | 0.612232 | 6.4:+23052115 | MS.gene09437:CDS |
| GCAGGCCCTGAGAGATCGAA+CGG | 0.616767 | 6.4:+23051981 | MS.gene09437:CDS |
| CGAGCCACATTTGTGTCACA+CGG | 0.618843 | 6.4:+23052970 | MS.gene09437:CDS |
| ATGGCCACCATAGCCTCGGT+GGG | 0.619166 | 6.4:-23053123 | None:intergenic |
| GAGCGTGACCATATAGCCCA+TGG | 0.625365 | 6.4:-23052132 | None:intergenic |
| ACCGAAAACAACCCATACAT+GGG | 0.628237 | 6.4:+23052922 | MS.gene09437:CDS |
| GTTGCCATTGGTCAAACCTG+TGG | 0.631709 | 6.4:+23051888 | MS.gene09437:CDS |
| TGCAACTATAAAACTTCACA+CGG | 0.631985 | 6.4:-23053463 | None:intergenic |
| ACACGGCAACCTAGGTAGGT+TGG | 0.632318 | 6.4:+23052987 | MS.gene09437:CDS |
| GGTAGGTTGGCTAAAGAGAG+AGG | 0.635441 | 6.4:+23053000 | MS.gene09437:CDS |
| TGTACACAAAACCCATGTAT+GGG | 0.636404 | 6.4:-23052933 | None:intergenic |
| GAATGCATATGTGAGGATTG+TGG | 0.642224 | 6.4:+23053080 | MS.gene09437:CDS |
| GAGTCTGGCAACAAATTATG+TGG | 0.650290 | 6.4:-23051925 | None:intergenic |
| CACTTGATGGATGAATTCAT+CGG | 0.650620 | 6.4:-23051959 | None:intergenic |
| GCCATTGGTCAAACCTGTGG+AGG | 0.654988 | 6.4:+23051891 | MS.gene09437:CDS |
| GTCACGAGAATGCATATGTG+AGG | 0.664895 | 6.4:+23053073 | MS.gene09437:CDS |
| ACCGCTGAAGAAAATAGACA+TGG | 0.664992 | 6.4:+23052159 | MS.gene09437:CDS |
| CTCGTGACGCTTCTCATCAG+CGG | 0.665409 | 6.4:-23053058 | None:intergenic |
| CATGCACAAGAGTTTGTGTG+TGG | 0.720139 | 6.4:+23053345 | MS.gene09437:CDS |
| GTTGCCGTGTGACACAAATG+TGG | 0.723814 | 6.4:-23052974 | None:intergenic |
| GGTCGGTGGCATGATCACCG+AGG | 0.744020 | 6.4:+23052035 | MS.gene09437:CDS |
| TCTAGAAGTTGATCCCACCG+AGG | 0.786898 | 6.4:+23053110 | MS.gene09437:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATGAAAAATGTTATT+TGG | - | chr6.4:23052872-23052891 | None:intergenic | 10.0% |
| !! | ATAAATTAATTGATTGTTCA+TGG | + | chr6.4:23052885-23052904 | MS.gene09437:intron | 15.0% |
| !! | TAATAAATCGTATTTGTGTA+TGG | - | chr6.4:23052550-23052569 | None:intergenic | 20.0% |
| ! | AAAACTTATCTATATCTCTC+CGG | + | chr6.4:23052192-23052211 | MS.gene09437:CDS | 25.0% |
| ! | AAGACTATCCAATATTTGAT+TGG | + | chr6.4:23052240-23052259 | MS.gene09437:CDS | 25.0% |
| ! | ACAATGCATAATATATGCAA+AGG | + | chr6.4:23052679-23052698 | MS.gene09437:intron | 25.0% |
| ! | ATGTGATAGATAGAATATGT+TGG | - | chr6.4:23052808-23052827 | None:intergenic | 25.0% |
| ! | GAACGACTATTAAAAAATAG+TGG | - | chr6.4:23052744-23052763 | None:intergenic | 25.0% |
| !!! | ATTTGTTATTCTCGTTAGTT+TGG | - | chr6.4:23052452-23052471 | None:intergenic | 25.0% |
| !!! | TTCTATTTCTTTTTCTTTCG+AGG | + | chr6.4:23052833-23052852 | MS.gene09437:intron | 25.0% |
| AAAACCACAAGATAATCATC+TGG | - | chr6.4:23052015-23052034 | None:intergenic | 30.0% | |
| ACATATACATGCACACAATA+TGG | + | chr6.4:23052305-23052324 | MS.gene09437:intron | 30.0% | |
| AGATCAATCACAAATTCTCT+TGG | + | chr6.4:23053421-23053440 | MS.gene09437:CDS | 30.0% | |
| ATATGTATAGATGACAGTGA+CGG | - | chr6.4:23052291-23052310 | None:intergenic | 30.0% | |
| GTTCAAATCACTAGAGAAAT+GGG | + | chr6.4:23051852-23051871 | MS.gene09437:CDS | 30.0% | |
| TAATTGATTGTTCATGGTGT+AGG | + | chr6.4:23052891-23052910 | MS.gene09437:intron | 30.0% | |
| TGTTCAAATCACTAGAGAAA+TGG | + | chr6.4:23051851-23051870 | MS.gene09437:CDS | 30.0% | |
| ! | AGATGATTATCTTGTGGTTT+TGG | + | chr6.4:23052014-23052033 | MS.gene09437:CDS | 30.0% |
| ! | TCTTCCAGTTTTCTTAATCT+AGG | - | chr6.4:23053378-23053397 | None:intergenic | 30.0% |
| ! | TTGAACACTTCTTTCTTTTC+AGG | - | chr6.4:23051838-23051857 | None:intergenic | 30.0% |
| !!! | TAGTGGTGTCTTTTTTTTTG+CGG | - | chr6.4:23052727-23052746 | None:intergenic | 30.0% |
| AGCTCACAAAGACAAAATAG+AGG | - | chr6.4:23052642-23052661 | None:intergenic | 35.0% | |
| ATCCAATATTTGATTGGAGC+TGG | + | chr6.4:23052246-23052265 | MS.gene09437:CDS | 35.0% | |
| CATAATATATGCAAAGGTCC+GGG | + | chr6.4:23052685-23052704 | MS.gene09437:intron | 35.0% | |
| CCAAACATGGATAAACAAGT+TGG | + | chr6.4:23052074-23052093 | MS.gene09437:CDS | 35.0% | |
| GCATAATATATGCAAAGGTC+CGG | + | chr6.4:23052684-23052703 | MS.gene09437:intron | 35.0% | |
| TAGAGTTCTTGATTAGACGA+TGG | + | chr6.4:23053283-23053302 | MS.gene09437:CDS | 35.0% | |
| TGCACCTAGATTAAGAAAAC+TGG | + | chr6.4:23053371-23053390 | MS.gene09437:CDS | 35.0% | |
| TGTACACAAAACCCATGTAT+GGG | - | chr6.4:23052936-23052955 | None:intergenic | 35.0% | |
| TTTATCCATGTTTGGTACGT+AGG | - | chr6.4:23052069-23052088 | None:intergenic | 35.0% | |
| ! | AATCTTGCGATGCATCATTT+TGG | - | chr6.4:23053151-23053170 | None:intergenic | 35.0% |
| ! | ACATGGATAAACAAGTTGGA+TGG | + | chr6.4:23052078-23052097 | MS.gene09437:CDS | 35.0% |
| ! | ATAAACAAGTTGGATGGAGT+TGG | + | chr6.4:23052084-23052103 | MS.gene09437:CDS | 35.0% |
| ! | CACTTGATGGATGAATTCAT+CGG | - | chr6.4:23051962-23051981 | None:intergenic | 35.0% |
| ! | CCAACTTGTTTATCCATGTT+TGG | - | chr6.4:23052077-23052096 | None:intergenic | 35.0% |
| ! | CGTTAGTTTGGCAAATGTAT+GGG | - | chr6.4:23052440-23052459 | None:intergenic | 35.0% |
| ! | TCCATGTCTATTTTCTTCAG+CGG | - | chr6.4:23052163-23052182 | None:intergenic | 35.0% |
| ! | TCGTTAGTTTGGCAAATGTA+TGG | - | chr6.4:23052441-23052460 | None:intergenic | 35.0% |
| !!! | GATTATCTTGTGGTTTTGGT+CGG | + | chr6.4:23052018-23052037 | MS.gene09437:CDS | 35.0% |
| ACCGAAAACAACCCATACAT+GGG | + | chr6.4:23052922-23052941 | MS.gene09437:CDS | 40.0% | |
| ACCGCTGAAGAAAATAGACA+TGG | + | chr6.4:23052159-23052178 | MS.gene09437:CDS | 40.0% | |
| ATATTTGATTGGAGCTGGCA+TGG | + | chr6.4:23052251-23052270 | MS.gene09437:CDS | 40.0% | |
| ATGGAGATTGGAGAAGATTG+AGG | + | chr6.4:23053302-23053321 | MS.gene09437:CDS | 40.0% | |
| ATTGTTCATGGTGTAGGATG+TGG | + | chr6.4:23052897-23052916 | MS.gene09437:intron | 40.0% | |
| CTGCAGAAAAATGATCGAAG+AGG | - | chr6.4:23053215-23053234 | None:intergenic | 40.0% | |
| CTTGATTAGACGATGGAGAT+TGG | + | chr6.4:23053290-23053309 | MS.gene09437:CDS | 40.0% | |
| CTTTGTGAGCTTAACTCAGT+TGG | + | chr6.4:23052651-23052670 | MS.gene09437:intron | 40.0% | |
| GAATGCATATGTGAGGATTG+TGG | + | chr6.4:23053080-23053099 | MS.gene09437:CDS | 40.0% | |
| GAGTCTGGCAACAAATTATG+TGG | - | chr6.4:23051928-23051947 | None:intergenic | 40.0% | |
| GCTTCCAGATGATTATCTTG+TGG | + | chr6.4:23052008-23052027 | MS.gene09437:CDS | 40.0% | |
| GTGTACACAAAACCCATGTA+TGG | - | chr6.4:23052937-23052956 | None:intergenic | 40.0% | |
| TACCGAAAACAACCCATACA+TGG | + | chr6.4:23052921-23052940 | MS.gene09437:CDS | 40.0% | |
| TGAATTCATCCATCAAGTGC+AGG | + | chr6.4:23051963-23051982 | MS.gene09437:CDS | 40.0% | |
| TGCCAGCTCCAATCAAATAT+TGG | - | chr6.4:23052251-23052270 | None:intergenic | 40.0% | |
| TGGAGATTGGAGAAGATTGA+GGG | + | chr6.4:23053303-23053322 | MS.gene09437:CDS | 40.0% | |
| TTCACAAAGTGTGTTGCCAT+TGG | + | chr6.4:23051876-23051895 | MS.gene09437:CDS | 40.0% | |
| TTGTTCATGGTGTAGGATGT+GGG | + | chr6.4:23052898-23052917 | MS.gene09437:intron | 40.0% | |
| ! | AAAAATGATCGAAGAGGCGT+GGG | - | chr6.4:23053209-23053228 | None:intergenic | 40.0% |
| ! | TGATGGATGAATTCATCGGA+AGG | - | chr6.4:23051958-23051977 | None:intergenic | 40.0% |
| !! | ACCCATGTATGGGTTGTTTT+CGG | - | chr6.4:23052926-23052945 | None:intergenic | 40.0% |
| !! | CTTCGATCATTTTTCTGCAG+TGG | + | chr6.4:23053215-23053234 | MS.gene09437:CDS | 40.0% |
| !!! | GTCTTTTTTTTTGCGGTGGT+CGG | - | chr6.4:23052720-23052739 | None:intergenic | 40.0% |
| !!! | TCTTTTTTTTTGCGGTGGTC+GGG | - | chr6.4:23052719-23052738 | None:intergenic | 40.0% |
| !!! | TGGTGTCTTTTTTTTTGCGG+TGG | - | chr6.4:23052724-23052743 | None:intergenic | 40.0% |
| AAATGTGGCTCGCTCTTGAA+AGG | - | chr6.4:23052962-23052981 | None:intergenic | 45.0% | |
| ATTGAGGGTTTGACAAGCGA+AGG | + | chr6.4:23053318-23053337 | MS.gene09437:CDS | 45.0% | |
| CATGCACAAGAGTTTGTGTG+TGG | + | chr6.4:23053345-23053364 | MS.gene09437:CDS | 45.0% | |
| CATGCACATATCAACTCGAC+CGG | - | chr6.4:23052214-23052233 | None:intergenic | 45.0% | |
| CATTGCCTACGTACCAAACA+TGG | + | chr6.4:23052061-23052080 | MS.gene09437:CDS | 45.0% | |
| GAAAAATGATCGAAGAGGCG+TGG | - | chr6.4:23053210-23053229 | None:intergenic | 45.0% | |
| GTCACGAGAATGCATATGTG+AGG | + | chr6.4:23053073-23053092 | MS.gene09437:CDS | 45.0% | |
| TCCATCATGCATCAAGTGAG+CGG | - | chr6.4:23053181-23053200 | None:intergenic | 45.0% | |
| TCTCTTTAGCCAACCTACCT+AGG | - | chr6.4:23052999-23053018 | None:intergenic | 45.0% | |
| TGCACTCGTAACACGTATGT+GGG | - | chr6.4:23052518-23052537 | None:intergenic | 45.0% | |
| TGGTTCAAGTCTCACACCAT+GGG | + | chr6.4:23052116-23052135 | MS.gene09437:CDS | 45.0% | |
| !! | AAACTGGAAGAGCGTCTTGA+TGG | + | chr6.4:23053387-23053406 | MS.gene09437:CDS | 45.0% |
| !! | AACTGGAAGAGCGTCTTGAT+GGG | + | chr6.4:23053388-23053407 | MS.gene09437:CDS | 45.0% |
| !!! | GCGATGCATCATTTTGGCTA+TGG | - | chr6.4:23053145-23053164 | None:intergenic | 45.0% |
| !!! | TATCTTGTGGTTTTGGTCGG+TGG | + | chr6.4:23052021-23052040 | MS.gene09437:CDS | 45.0% |
| CACATACGTGTTACGAGTGC+AGG | + | chr6.4:23052517-23052536 | MS.gene09437:intron | 50.0% | |
| CCATCATGCATCAAGTGAGC+GGG | - | chr6.4:23053180-23053199 | None:intergenic | 50.0% | |
| CGAGCCACATTTGTGTCACA+CGG | + | chr6.4:23052970-23052989 | MS.gene09437:CDS | 50.0% | |
| CTCTCACTTGCACGCATATG+CGG | + | chr6.4:23053027-23053046 | MS.gene09437:CDS | 50.0% | |
| CTGCACTCGTAACACGTATG+TGG | - | chr6.4:23052519-23052538 | None:intergenic | 50.0% | |
| CTGGTTCAAGTCTCACACCA+TGG | + | chr6.4:23052115-23052134 | MS.gene09437:CDS | 50.0% | |
| GTACGTAGGCAATGCTTCCT+CGG | - | chr6.4:23052055-23052074 | None:intergenic | 50.0% | |
| GTTGCCATTGGTCAAACCTG+TGG | + | chr6.4:23051888-23051907 | MS.gene09437:CDS | 50.0% | |
| GTTGCCGTGTGACACAAATG+TGG | - | chr6.4:23052977-23052996 | None:intergenic | 50.0% | |
| TCAAACCTGTGGAGGAATGC+TGG | + | chr6.4:23051899-23051918 | MS.gene09437:CDS | 50.0% | |
| TCCTCCACAGGTTTGACCAA+TGG | - | chr6.4:23051895-23051914 | None:intergenic | 50.0% | |
| TCGGAAGGTAGTGATGAGTC+TGG | - | chr6.4:23051943-23051962 | None:intergenic | 50.0% | |
| TCTCACTTGCACGCATATGC+GGG | + | chr6.4:23053028-23053047 | MS.gene09437:CDS | 50.0% | |
| TCTGCAGTGGCACAACGTAT+TGG | + | chr6.4:23053228-23053247 | MS.gene09437:CDS | 50.0% | |
| TTTGTGTCACACGGCAACCT+AGG | + | chr6.4:23052979-23052998 | MS.gene09437:CDS | 50.0% | |
| ! | GGTAGGTTGGCTAAAGAGAG+AGG | + | chr6.4:23053000-23053019 | MS.gene09437:CDS | 50.0% |
| ! | GTCTCACACCATGGGCTATA+TGG | + | chr6.4:23052124-23052143 | MS.gene09437:CDS | 50.0% |
| ! | TCTAGAAGTTGATCCCACCG+AGG | + | chr6.4:23053110-23053129 | MS.gene09437:CDS | 50.0% |
| ACACGGCAACCTAGGTAGGT+TGG | + | chr6.4:23052987-23053006 | MS.gene09437:CDS | 55.0% | |
| AGTTGATCCCACCGAGGCTA+TGG | + | chr6.4:23053116-23053135 | MS.gene09437:CDS | 55.0% | |
| CCCGCTCACTTGATGCATGA+TGG | + | chr6.4:23053177-23053196 | MS.gene09437:CDS | 55.0% | |
| CGCATATGCGTGCAAGTGAG+AGG | - | chr6.4:23053029-23053048 | None:intergenic | 55.0% | |
| CTCAGCCGTTCGATCTCTCA+GGG | - | chr6.4:23051989-23052008 | None:intergenic | 55.0% | |
| CTCGTGACGCTTCTCATCAG+CGG | - | chr6.4:23053061-23053080 | None:intergenic | 55.0% | |
| GAGCGTGACCATATAGCCCA+TGG | - | chr6.4:23052135-23052154 | None:intergenic | 55.0% | |
| GCCATTGGTCAAACCTGTGG+AGG | + | chr6.4:23051891-23051910 | MS.gene09437:CDS | 55.0% | |
| GGGCTATATGGTCACGCTCT+TGG | + | chr6.4:23052136-23052155 | MS.gene09437:CDS | 55.0% | |
| GGTGGTCGGGATTTGAATCC+CGG | - | chr6.4:23052706-23052725 | None:intergenic | 55.0% | |
| TGTCACACGGCAACCTAGGT+AGG | + | chr6.4:23052983-23053002 | MS.gene09437:CDS | 55.0% | |
| ATGGCCACCATAGCCTCGGT+GGG | - | chr6.4:23053126-23053145 | None:intergenic | 60.0% | |
| CTCTCAGGGCCTGCACTTGA+TGG | - | chr6.4:23051975-23051994 | None:intergenic | 60.0% | |
| GATGGAGTTGGCGACGAGAC+TGG | + | chr6.4:23052096-23052115 | MS.gene09437:CDS | 60.0% | |
| GCAGGCCCTGAGAGATCGAA+CGG | + | chr6.4:23051981-23052000 | MS.gene09437:CDS | 60.0% | |
| GCTCAGCCGTTCGATCTCTC+AGG | - | chr6.4:23051990-23052009 | None:intergenic | 60.0% | |
| GGCTATGGCCACCATAGCCT+CGG | - | chr6.4:23053130-23053149 | None:intergenic | 60.0% | |
| TATGGCCACCATAGCCTCGG+TGG | - | chr6.4:23053127-23053146 | None:intergenic | 60.0% | |
| TGATCCCACCGAGGCTATGG+TGG | + | chr6.4:23053119-23053138 | MS.gene09437:CDS | 60.0% | |
| GGCTGCCAGCATTCCTCCAC+AGG | - | chr6.4:23051907-23051926 | None:intergenic | 65.0% | |
| GGTCGGTGGCATGATCACCG+AGG | + | chr6.4:23052035-23052054 | MS.gene09437:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 23051829 | 23053470 | 23051829 | ID=MS.gene09437 |
| chr6.4 | mRNA | 23051829 | 23053470 | 23051829 | ID=MS.gene09437.t1;Parent=MS.gene09437 |
| chr6.4 | exon | 23051829 | 23052272 | 23051829 | ID=MS.gene09437.t1.exon1;Parent=MS.gene09437.t1 |
| chr6.4 | CDS | 23051829 | 23052272 | 23051829 | ID=cds.MS.gene09437.t1;Parent=MS.gene09437.t1 |
| chr6.4 | exon | 23052913 | 23053470 | 23052913 | ID=MS.gene09437.t1.exon2;Parent=MS.gene09437.t1 |
| chr6.4 | CDS | 23052913 | 23053470 | 23052913 | ID=cds.MS.gene09437.t1;Parent=MS.gene09437.t1 |
| Gene Sequence |
| Protein sequence |
