Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20017.t1 | XP_013469374.1 | 95.1 | 405 | 1 | 1 | 4 | 389 | 73 | 477 | 8.10E-220 | 772.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20017.t1 | Q9LZR3 | 77.6 | 397 | 68 | 3 | 4 | 381 | 77 | 471 | 1.1e-180 | 634.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20017.t1 | A0A072VNP9 | 95.1 | 405 | 1 | 1 | 4 | 389 | 73 | 477 | 5.8e-220 | 772.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050584 | MS.gene20017 | 0.811374 | 7.23E-51 | -1.69E-46 |
| MS.gene050585 | MS.gene20017 | 0.824936 | 6.16E-54 | -1.69E-46 |
| MS.gene050586 | MS.gene20017 | 0.811095 | 8.31E-51 | -1.69E-46 |
| MS.gene050762 | MS.gene20017 | 0.801605 | 8.32E-49 | -1.69E-46 |
| MS.gene050763 | MS.gene20017 | 0.800445 | 1.44E-48 | -1.69E-46 |
| MS.gene051789 | MS.gene20017 | 0.833201 | 6.11E-56 | -1.69E-46 |
| MS.gene053074 | MS.gene20017 | 0.832083 | 1.16E-55 | -1.69E-46 |
| MS.gene054596 | MS.gene20017 | 0.808297 | 3.32E-50 | -1.69E-46 |
| MS.gene059006 | MS.gene20017 | 0.810285 | 1.24E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20017.t1 | MTR_1g492700 | 95.062 | 405 | 1 | 1 | 4 | 389 | 73 | 477 | 0.0 | 792 |
| MS.gene20017.t1 | MTR_7g103590 | 78.519 | 405 | 67 | 2 | 4 | 389 | 76 | 479 | 0.0 | 679 |
| MS.gene20017.t1 | MTR_1g061510 | 77.778 | 405 | 70 | 2 | 4 | 389 | 67 | 470 | 0.0 | 668 |
| MS.gene20017.t1 | MTR_1g061340 | 75.062 | 405 | 81 | 2 | 4 | 389 | 67 | 470 | 0.0 | 645 |
| MS.gene20017.t1 | MTR_1g061280 | 74.321 | 405 | 84 | 2 | 4 | 389 | 67 | 470 | 0.0 | 635 |
| MS.gene20017.t1 | MTR_1g061270 | 72.099 | 405 | 92 | 3 | 4 | 389 | 67 | 469 | 0.0 | 619 |
| MS.gene20017.t1 | MTR_4g055520 | 69.512 | 410 | 100 | 3 | 4 | 389 | 76 | 484 | 0.0 | 606 |
| MS.gene20017.t1 | MTR_4g055520 | 69.512 | 410 | 100 | 3 | 4 | 389 | 76 | 484 | 0.0 | 605 |
| MS.gene20017.t1 | MTR_4g055520 | 69.947 | 376 | 89 | 2 | 38 | 389 | 29 | 404 | 0.0 | 561 |
| MS.gene20017.t1 | MTR_7g101950 | 63.235 | 408 | 127 | 4 | 3 | 389 | 72 | 477 | 0.0 | 548 |
| MS.gene20017.t1 | MTR_3g103500 | 51.613 | 372 | 159 | 3 | 16 | 367 | 227 | 597 | 8.28e-135 | 402 |
| MS.gene20017.t1 | MTR_4g006010 | 51.200 | 375 | 163 | 2 | 14 | 369 | 226 | 599 | 9.16e-134 | 399 |
| MS.gene20017.t1 | MTR_6g007807 | 49.737 | 380 | 171 | 2 | 23 | 383 | 201 | 579 | 2.07e-133 | 397 |
| MS.gene20017.t1 | MTR_3g109040 | 50.398 | 377 | 167 | 2 | 10 | 367 | 196 | 571 | 9.32e-132 | 393 |
| MS.gene20017.t1 | MTR_3g109040 | 50.398 | 377 | 167 | 2 | 10 | 367 | 207 | 582 | 1.61e-131 | 393 |
| MS.gene20017.t1 | MTR_8g012320 | 50.134 | 373 | 166 | 2 | 14 | 367 | 229 | 600 | 3.66e-118 | 359 |
| MS.gene20017.t1 | MTR_3g103500 | 58.015 | 262 | 109 | 1 | 16 | 276 | 227 | 488 | 2.75e-106 | 322 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20017.t1 | AT5G03760 | 77.582 | 397 | 68 | 3 | 4 | 381 | 77 | 471 | 0.0 | 650 |
| MS.gene20017.t1 | AT5G22740 | 73.815 | 401 | 84 | 3 | 4 | 384 | 77 | 476 | 0.0 | 623 |
| MS.gene20017.t1 | AT1G23480 | 70.277 | 397 | 99 | 1 | 4 | 381 | 99 | 495 | 0.0 | 595 |
| MS.gene20017.t1 | AT1G23480 | 70.277 | 397 | 99 | 1 | 4 | 381 | 99 | 495 | 0.0 | 595 |
| MS.gene20017.t1 | AT1G23480 | 70.277 | 397 | 99 | 1 | 4 | 381 | 27 | 423 | 0.0 | 595 |
| MS.gene20017.t1 | AT4G13410 | 67.419 | 399 | 110 | 2 | 4 | 383 | 91 | 488 | 0.0 | 584 |
| MS.gene20017.t1 | AT2G35650 | 68.380 | 389 | 103 | 2 | 4 | 373 | 99 | 486 | 0.0 | 578 |
| MS.gene20017.t1 | AT2G35650 | 68.380 | 389 | 103 | 2 | 4 | 373 | 27 | 414 | 0.0 | 577 |
| MS.gene20017.t1 | AT2G35650 | 68.380 | 389 | 103 | 2 | 4 | 373 | 27 | 414 | 0.0 | 577 |
| MS.gene20017.t1 | AT1G24070 | 68.638 | 389 | 102 | 2 | 4 | 373 | 102 | 489 | 0.0 | 572 |
| MS.gene20017.t1 | AT5G16190 | 69.424 | 399 | 101 | 3 | 4 | 383 | 54 | 450 | 0.0 | 570 |
| MS.gene20017.t1 | AT5G16190 | 69.424 | 399 | 101 | 3 | 4 | 383 | 54 | 450 | 0.0 | 570 |
| MS.gene20017.t1 | AT5G16190 | 69.409 | 389 | 99 | 2 | 14 | 383 | 2 | 389 | 0.0 | 560 |
| MS.gene20017.t1 | AT5G16190 | 64.120 | 432 | 101 | 3 | 4 | 383 | 54 | 483 | 0.0 | 558 |
| MS.gene20017.t1 | AT3G56000 | 63.496 | 389 | 119 | 4 | 4 | 369 | 70 | 458 | 0.0 | 519 |
| MS.gene20017.t1 | AT1G23480 | 69.394 | 330 | 82 | 1 | 71 | 381 | 21 | 350 | 1.70e-172 | 488 |
| MS.gene20017.t1 | AT4G16590 | 58.438 | 397 | 112 | 3 | 4 | 381 | 104 | 466 | 1.41e-170 | 487 |
| MS.gene20017.t1 | AT4G13410 | 66.972 | 327 | 89 | 1 | 76 | 383 | 1 | 327 | 2.82e-168 | 475 |
| MS.gene20017.t1 | AT2G35650 | 67.284 | 324 | 87 | 1 | 69 | 373 | 5 | 328 | 6.00e-168 | 475 |
| MS.gene20017.t1 | AT4G13410 | 68.647 | 303 | 86 | 3 | 4 | 305 | 91 | 385 | 1.47e-157 | 449 |
| MS.gene20017.t1 | AT1G24070 | 68.051 | 313 | 87 | 3 | 4 | 316 | 102 | 401 | 6.60e-157 | 448 |
| MS.gene20017.t1 | AT2G24630 | 50.928 | 377 | 165 | 2 | 10 | 367 | 212 | 587 | 3.05e-135 | 402 |
| MS.gene20017.t1 | AT2G24630 | 50.928 | 377 | 165 | 2 | 10 | 367 | 212 | 587 | 3.05e-135 | 402 |
| MS.gene20017.t1 | AT4G31590 | 49.123 | 399 | 178 | 3 | 10 | 384 | 212 | 609 | 3.26e-135 | 402 |
| MS.gene20017.t1 | AT3G28180 | 51.058 | 378 | 164 | 3 | 12 | 369 | 185 | 561 | 3.88e-134 | 399 |
| MS.gene20017.t1 | AT3G07330 | 49.862 | 363 | 162 | 2 | 24 | 367 | 220 | 581 | 3.75e-125 | 376 |
| MS.gene20017.t1 | AT3G07330 | 49.862 | 363 | 162 | 2 | 24 | 367 | 220 | 581 | 3.75e-125 | 376 |
| MS.gene20017.t1 | AT4G07960 | 51.872 | 374 | 158 | 4 | 15 | 367 | 229 | 601 | 8.33e-124 | 373 |
| MS.gene20017.t1 | AT4G07960 | 51.872 | 374 | 158 | 4 | 15 | 367 | 229 | 601 | 8.33e-124 | 373 |
Find 97 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGCTTTCCCTATGGTTT+TGG | 0.193902 | 1.4:+72677045 | MS.gene20017:CDS |
| TCCATAACTCATGCTTTCTT+TGG | 0.225275 | 1.4:+72678452 | MS.gene20017:CDS |
| AGCAAATCTCTTCAGGAAAA+TGG | 0.286938 | 1.4:+72679633 | MS.gene20017:CDS |
| CTCAACAGATCCAATCATTA+AGG | 0.296511 | 1.4:+72677804 | MS.gene20017:CDS |
| ATGGGTAGTTACTGAGAAAT+TGG | 0.313856 | 1.4:+72680178 | MS.gene20017:CDS |
| AGGACCAAGGCAACACTTAT+AGG | 0.319245 | 1.4:+72680128 | MS.gene20017:intron |
| CATGCTTTCTTTGGTTTCAA+TGG | 0.321614 | 1.4:+72678461 | MS.gene20017:CDS |
| TTGGAGTTCCAACAGCATTA+AGG | 0.324765 | 1.4:-72679968 | None:intergenic |
| CTATCATTTCCTTGTGGAAC+AGG | 0.336157 | 1.4:+72678421 | MS.gene20017:CDS |
| GATTTCAAAACCTTAATGAT+TGG | 0.350715 | 1.4:-72677814 | None:intergenic |
| TCTGGAACTAAAACAGTTGC+AGG | 0.378471 | 1.4:-72679894 | None:intergenic |
| AACCAGAGAAACATTACAAA+TGG | 0.386703 | 1.4:+72676987 | MS.gene20017:intron |
| CACTTGGGAACTTCTACTTC+TGG | 0.390733 | 1.4:-72679912 | None:intergenic |
| GTGGCCCAGCAAATCTCTTC+AGG | 0.393738 | 1.4:+72679626 | MS.gene20017:CDS |
| TTACAAATGGGAGGCACTTA+AGG | 0.395765 | 1.4:+72677000 | MS.gene20017:CDS |
| CGGTAGGCTTTGAATGTACT+TGG | 0.409136 | 1.4:-72679580 | None:intergenic |
| CCGCACAACAGTGGAAGATA+TGG | 0.414499 | 1.4:+72678650 | MS.gene20017:CDS |
| CGGTAAAGAAAGTTAGATTC+AGG | 0.418214 | 1.4:-72678106 | None:intergenic |
| CCACATGAGCTATGATCTTC+CGG | 0.423741 | 1.4:-72679842 | None:intergenic |
| CAGGTGTATCAATTATCAAT+TGG | 0.424571 | 1.4:+72677724 | MS.gene20017:intron |
| AAACATAAAGTATGAGATAA+GGG | 0.425945 | 1.4:+72677982 | MS.gene20017:CDS |
| ATTACACTCCTTAATGCTGT+TGG | 0.436203 | 1.4:+72679960 | MS.gene20017:CDS |
| TTGCAGGTACAGCTGGTGTT+TGG | 0.459649 | 1.4:+72678589 | MS.gene20017:intron |
| GATGCTCTTAAAATAAAATC+AGG | 0.465710 | 1.4:+72680203 | MS.gene20017:CDS |
| TAGGTTTGTTTGAGGCTGGT+AGG | 0.468825 | 1.4:+72680147 | MS.gene20017:CDS |
| TGGAAACTCTGCTTTCCCTA+TGG | 0.470085 | 1.4:+72677039 | MS.gene20017:CDS |
| GAGATAAGGGAAAATAGAAA+TGG | 0.471145 | 1.4:+72677995 | MS.gene20017:CDS |
| TGTGAGAGATGGAGAAGGAA+AGG | 0.472902 | 1.4:+72677956 | MS.gene20017:CDS |
| AATAGAAATGGTTACAAAGC+TGG | 0.476155 | 1.4:+72678007 | MS.gene20017:CDS |
| AGGCTGGTAGGGTAAATGAA+TGG | 0.476703 | 1.4:+72680159 | MS.gene20017:CDS |
| AACACTTATAGGTTTGTTTG+AGG | 0.478352 | 1.4:+72680139 | MS.gene20017:CDS |
| GTTCAAGCTCGATGGCAATT+CGG | 0.480229 | 1.4:+72678169 | MS.gene20017:CDS |
| CTTATAGGTTTGTTTGAGGC+TGG | 0.481615 | 1.4:+72680143 | MS.gene20017:CDS |
| ACCAAAGAAAGCATGAGTTA+TGG | 0.484858 | 1.4:-72678453 | None:intergenic |
| AATCCCAATGTATAATGAAA+AGG | 0.485916 | 1.4:+72677072 | MS.gene20017:CDS |
| AGGTTTGTTTGAGGCTGGTA+GGG | 0.485982 | 1.4:+72680148 | MS.gene20017:CDS |
| TTGAAAATCAGCATCAAAGA+TGG | 0.492249 | 1.4:-72678083 | None:intergenic |
| TAAACATAAAGTATGAGATA+AGG | 0.492901 | 1.4:+72677981 | MS.gene20017:CDS |
| TCATGCATTGCAGGTACAGC+TGG | 0.493085 | 1.4:+72678582 | MS.gene20017:intron |
| AAGGATGATGATATTGAGCT+TGG | 0.497523 | 1.4:+72677019 | MS.gene20017:CDS |
| TTCCTTGTGGAACAGGAAGT+TGG | 0.500052 | 1.4:+72678428 | MS.gene20017:CDS |
| AAAGCTGGTGCTCTTAAAGA+AGG | 0.505067 | 1.4:+72678022 | MS.gene20017:CDS |
| TATATAGACAGCACCCCACT+TGG | 0.506102 | 1.4:-72679928 | None:intergenic |
| CAAACCTATAAGTGTTGCCT+TGG | 0.506446 | 1.4:-72680132 | None:intergenic |
| GAGCTGCATGTGGGTTATCA+TGG | 0.506578 | 1.4:+72677746 | MS.gene20017:CDS |
| CTTGATCAAAATCCACAAGT+TGG | 0.507813 | 1.4:+72678142 | MS.gene20017:CDS |
| GGCTGGTAGGGTAAATGAAT+GGG | 0.511827 | 1.4:+72680160 | MS.gene20017:CDS |
| CACTAAATGAAGCTGGTGGA+TGG | 0.511876 | 1.4:+72678622 | MS.gene20017:CDS |
| GGGATTTGCACCAAAACCAT+AGG | 0.516420 | 1.4:-72677055 | None:intergenic |
| ACCAGAGAAACATTACAAAT+GGG | 0.517363 | 1.4:+72676988 | MS.gene20017:intron |
| TGGGTAGTTACTGAGAAATT+GGG | 0.526326 | 1.4:+72680179 | MS.gene20017:CDS |
| TACGAGCTAGTCTCAAAGGC+TGG | 0.530014 | 1.4:+72678682 | MS.gene20017:CDS |
| AAGAATGCAAGAGATGTCAT+TGG | 0.534193 | 1.4:+72678397 | MS.gene20017:CDS |
| AAAATACCTTGAGGTCACTA+AGG | 0.552124 | 1.4:-72678716 | None:intergenic |
| TGAATAATAATTCTATCAGA+TGG | 0.555057 | 1.4:-72677769 | None:intergenic |
| TAGAATGTGAGAGATGGAGA+AGG | 0.558986 | 1.4:+72677951 | MS.gene20017:CDS |
| CTCGTATCACGATCGATGGA+AGG | 0.562630 | 1.4:+72680246 | MS.gene20017:CDS |
| TCTCTTCAGGAAAATGGCAA+TGG | 0.562690 | 1.4:+72679639 | MS.gene20017:CDS |
| AAATGAAGCTGGTGGATGGA+AGG | 0.564281 | 1.4:+72678626 | MS.gene20017:CDS |
| GCAGTACGAGCTAGTCTCAA+AGG | 0.568633 | 1.4:+72678678 | MS.gene20017:CDS |
| TGGAGATAGAATGTGAGAGA+TGG | 0.570198 | 1.4:+72677945 | MS.gene20017:CDS |
| ACCACCTGTGTTGCTGATAA+CGG | 0.570982 | 1.4:-72679600 | None:intergenic |
| GGATTTGCACCAAAACCATA+GGG | 0.574114 | 1.4:-72677054 | None:intergenic |
| ATTTCAGCACTAAATGAAGC+TGG | 0.577109 | 1.4:+72678615 | MS.gene20017:CDS |
| TTACAAGTATACATGTTGAA+AGG | 0.577798 | 1.4:+72675956 | None:intergenic |
| TTATCAATTGGAGCTGCATG+TGG | 0.578331 | 1.4:+72677736 | MS.gene20017:CDS |
| ATTGGACTATCATTTCCTTG+TGG | 0.584551 | 1.4:+72678415 | MS.gene20017:CDS |
| TGTGTACCTTAGTGACCTCA+AGG | 0.585422 | 1.4:+72678710 | MS.gene20017:CDS |
| AAGCCTCGTATCACGATCGA+TGG | 0.591131 | 1.4:+72680242 | MS.gene20017:CDS |
| CCCAATGTATAATGAAAAGG+AGG | 0.596084 | 1.4:+72677075 | MS.gene20017:CDS |
| CAGAAGTAGAAGTTCCCAAG+TGG | 0.598985 | 1.4:+72679913 | MS.gene20017:CDS |
| TTAAGGAGTGTAATAATACA+AGG | 0.606049 | 1.4:-72679951 | None:intergenic |
| TTAAACACAATAGAATATGG+TGG | 0.610132 | 1.4:+72677925 | MS.gene20017:intron |
| TTGGACTAGTTCAAGCTCGA+TGG | 0.612953 | 1.4:+72678161 | MS.gene20017:CDS |
| CACATAAAACTTCTTCCACA+TGG | 0.616199 | 1.4:-72679799 | None:intergenic |
| GCTTGAACTAGTCCAACTTG+TGG | 0.622881 | 1.4:-72678154 | None:intergenic |
| CAGCAACACAGGTGGTCATG+TGG | 0.623641 | 1.4:+72679607 | MS.gene20017:CDS |
| AGAAGTAGAAGTTCCCAAGT+GGG | 0.627113 | 1.4:+72679914 | MS.gene20017:CDS |
| GATCAAGGAATGGGATGGTG+CGG | 0.636879 | 1.4:-72678126 | None:intergenic |
| CCATATCTTCCACTGTTGTG+CGG | 0.638192 | 1.4:-72678650 | None:intergenic |
| CCTGTGTTGCTGATAACGGT+AGG | 0.640256 | 1.4:-72679596 | None:intergenic |
| ATGGAAGGACCGCACAACAG+TGG | 0.644477 | 1.4:+72678641 | MS.gene20017:CDS |
| TATCAATTGGAGCTGCATGT+GGG | 0.644918 | 1.4:+72677737 | MS.gene20017:CDS |
| AACCAACTTCCTGTTCCACA+AGG | 0.645217 | 1.4:-72678430 | None:intergenic |
| GAAGTAGAAGTTCCCAAGTG+GGG | 0.649479 | 1.4:+72679915 | MS.gene20017:CDS |
| GCTCTTAAAATAAAATCAGG+AGG | 0.655234 | 1.4:+72680206 | MS.gene20017:CDS |
| CTTCCATCGATCGTGATACG+AGG | 0.657335 | 1.4:-72680245 | None:intergenic |
| TTAATGCTGTTGGAACTCCA+AGG | 0.658326 | 1.4:+72679970 | MS.gene20017:CDS |
| AATGGAAATCATAAGAAACA+AGG | 0.660005 | 1.4:+72679657 | MS.gene20017:CDS |
| CCTACCGTTATCAGCAACAC+AGG | 0.662586 | 1.4:+72679596 | MS.gene20017:CDS |
| TCAGCACTAAATGAAGCTGG+TGG | 0.663266 | 1.4:+72678618 | MS.gene20017:CDS |
| CCGGAAGATCATAGCTCATG+TGG | 0.670378 | 1.4:+72679842 | MS.gene20017:CDS |
| AGAGAAACATTACAAATGGG+AGG | 0.673251 | 1.4:+72676991 | MS.gene20017:intron |
| TATGTCAATGCATAGGACCA+AGG | 0.675182 | 1.4:+72680115 | MS.gene20017:intron |
| ATATAGACAGCACCCCACTT+GGG | 0.679378 | 1.4:-72679927 | None:intergenic |
| ACCGTTATCAGCAACACAGG+TGG | 0.685287 | 1.4:+72679599 | MS.gene20017:CDS |
| TGATGCAGAAAGTGACCATG+TGG | 0.707458 | 1.4:+72679784 | MS.gene20017:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATAAAATAACTAGTT+AGG | + | chr1.4:72679465-72679484 | MS.gene20017:intron | 10.0% |
| !! | AAAACAAAAACAAAAATTCA+AGG | - | chr1.4:72677376-72677395 | None:intergenic | 15.0% |
| !! | AACATTAATCTCAATTAATT+AGG | - | chr1.4:72678220-72678239 | None:intergenic | 15.0% |
| !! | AATAATTATGATGATTTGAT+TGG | - | chr1.4:72679721-72679740 | None:intergenic | 15.0% |
| !! | AATTTATCTTATAGTAATGT+AGG | - | chr1.4:72675986-72676005 | None:intergenic | 15.0% |
| !! | ATCTCTTTAAATAACTAAAA+TGG | + | chr1.4:72676255-72676274 | MS.gene20017:intron | 15.0% |
| !! | ATTAAAGCAAAAAATAGTAT+AGG | - | chr1.4:72677409-72677428 | None:intergenic | 15.0% |
| !! | ATTGATAAAAAATTAGTTCA+TGG | - | chr1.4:72677668-72677687 | None:intergenic | 15.0% |
| !! | ATTTATCTTATAGTAATGTA+GGG | - | chr1.4:72675985-72676004 | None:intergenic | 15.0% |
| !! | TATTTAAACACAATAGAATA+TGG | + | chr1.4:72677922-72677941 | MS.gene20017:intron | 15.0% |
| !! | TTTGTTTAAAGAAATAGTTT+AGG | - | chr1.4:72676293-72676312 | None:intergenic | 15.0% |
| !!! | AACATGATTAATTTTAATAG+AGG | + | chr1.4:72679132-72679151 | MS.gene20017:intron | 15.0% |
| !!! | AATTTTAATATGTGTATGTT+TGG | + | chr1.4:72679225-72679244 | MS.gene20017:intron | 15.0% |
| !!! | TCAATAGTTAAAAAGTTTTT+TGG | + | chr1.4:72677683-72677702 | MS.gene20017:intron | 15.0% |
| !! | AAACATAAAGTATGAGATAA+GGG | + | chr1.4:72677982-72678001 | MS.gene20017:CDS | 20.0% |
| !! | AAATATAGAGAAAATTGCAA+GGG | - | chr1.4:72679691-72679710 | None:intergenic | 20.0% |
| !! | ATGGTTAAAAAGAATGTTAA+AGG | - | chr1.4:72678757-72678776 | None:intergenic | 20.0% |
| !! | CATCCTTTAACTATATATAT+AGG | - | chr1.4:72679491-72679510 | None:intergenic | 20.0% |
| !! | CTATATATATAGTTAAAGGA+TGG | + | chr1.4:72679489-72679508 | MS.gene20017:intron | 20.0% |
| !! | GAATATTTATTTGATCTAGT+AGG | + | chr1.4:72677498-72677517 | MS.gene20017:intron | 20.0% |
| !! | TAAACATAAAGTATGAGATA+AGG | + | chr1.4:72677981-72678000 | MS.gene20017:CDS | 20.0% |
| !! | TAAATATAGAGAAAATTGCA+AGG | - | chr1.4:72679692-72679711 | None:intergenic | 20.0% |
| !! | TAATTTCAAAAAACAGAAGT+AGG | + | chr1.4:72677199-72677218 | MS.gene20017:intron | 20.0% |
| !! | TATCATTAAATTCCCTAATA+CGG | + | chr1.4:72678488-72678507 | MS.gene20017:intron | 20.0% |
| !! | TCTCTATTTCAAAAAGATAT+AGG | - | chr1.4:72677288-72677307 | None:intergenic | 20.0% |
| !! | TGAATAATAATTCTATCAGA+TGG | - | chr1.4:72677772-72677791 | None:intergenic | 20.0% |
| !! | TTAACCAAATGAATTTCATT+TGG | + | chr1.4:72676828-72676847 | MS.gene20017:intron | 20.0% |
| !! | TTTAATGTAAACAAACAAGA+TGG | - | chr1.4:72677178-72677197 | None:intergenic | 20.0% |
| !! | TTTGTAGAAAGAGTTTATAT+GGG | + | chr1.4:72676929-72676948 | MS.gene20017:intron | 20.0% |
| !!! | AAAGTTGATATCATAATTGA+GGG | + | chr1.4:72679077-72679096 | MS.gene20017:intron | 20.0% |
| !!! | CTGGTTTACAAATTAAATTT+TGG | - | chr1.4:72680016-72680035 | None:intergenic | 20.0% |
| !!! | TATATAGTTTTTTCTTTGTC+CGG | + | chr1.4:72679823-72679842 | MS.gene20017:CDS | 20.0% |
| !!! | TTTTGTAGAAAGAGTTTATA+TGG | + | chr1.4:72676928-72676947 | MS.gene20017:intron | 20.0% |
| ! | AAAATGTTATGTCAATGCAT+AGG | + | chr1.4:72680108-72680127 | MS.gene20017:intron | 25.0% |
| ! | AAAGTTACACTAACATTAGA+TGG | + | chr1.4:72678318-72678337 | MS.gene20017:intron | 25.0% |
| ! | AAGTACATGAACTTGATTAT+AGG | - | chr1.4:72680044-72680063 | None:intergenic | 25.0% |
| ! | AATCCCAATGTATAATGAAA+AGG | + | chr1.4:72677072-72677091 | MS.gene20017:CDS | 25.0% |
| ! | AATGGAAATCATAAGAAACA+AGG | + | chr1.4:72679657-72679676 | MS.gene20017:CDS | 25.0% |
| ! | AGAATTACTCTCTAGTTATT+AGG | - | chr1.4:72678783-72678802 | None:intergenic | 25.0% |
| ! | AGATATAGGAAAACACTTAA+TGG | - | chr1.4:72677274-72677293 | None:intergenic | 25.0% |
| ! | AGGCCTATATATATAGTTAA+AGG | + | chr1.4:72679485-72679504 | MS.gene20017:intron | 25.0% |
| ! | AGTACATGAACTTGATTATA+GGG | - | chr1.4:72680043-72680062 | None:intergenic | 25.0% |
| ! | ATCTAGTTATGAGATATTCT+TGG | - | chr1.4:72678957-72678976 | None:intergenic | 25.0% |
| ! | ATTAATTAGGAGTTTCATGA+AGG | - | chr1.4:72678207-72678226 | None:intergenic | 25.0% |
| ! | CAAGGAATAAAAAGCAAAAA+TGG | - | chr1.4:72677358-72677377 | None:intergenic | 25.0% |
| ! | CACATAAACTTAATCAGATA+TGG | + | chr1.4:72678266-72678285 | MS.gene20017:intron | 25.0% |
| ! | CATTATCAAAATTCTTACCT+TGG | - | chr1.4:72679990-72680009 | None:intergenic | 25.0% |
| ! | GAAGCTAAAAAAAAATCACA+TGG | + | chr1.4:72679166-72679185 | MS.gene20017:intron | 25.0% |
| ! | GATGCTCTTAAAATAAAATC+AGG | + | chr1.4:72680203-72680222 | MS.gene20017:CDS | 25.0% |
| ! | GATTTCAAAACCTTAATGAT+TGG | - | chr1.4:72677817-72677836 | None:intergenic | 25.0% |
| ! | GTTAGTTAACTTTATCAACA+TGG | - | chr1.4:72677843-72677862 | None:intergenic | 25.0% |
| ! | TAATTGGTTGTATCTAAATC+TGG | + | chr1.4:72676470-72676489 | MS.gene20017:intron | 25.0% |
| ! | TATCTCATAACTAGATAATG+TGG | + | chr1.4:72678961-72678980 | MS.gene20017:intron | 25.0% |
| ! | TCTAGTTATGAGATATTCTT+GGG | - | chr1.4:72678956-72678975 | None:intergenic | 25.0% |
| ! | TTAAACACAATAGAATATGG+TGG | + | chr1.4:72677925-72677944 | MS.gene20017:intron | 25.0% |
| ! | TTATCATATACTCCACAAAA+TGG | + | chr1.4:72676348-72676367 | MS.gene20017:intron | 25.0% |
| ! | TTATGATTGAAAATACCTTG+AGG | - | chr1.4:72678728-72678747 | None:intergenic | 25.0% |
| !! | ATTGTCTTTCTTAAGTTGTT+TGG | + | chr1.4:72676959-72676978 | MS.gene20017:intron | 25.0% |
| !! | ATTTTCTACATTATCTTGCA+TGG | + | chr1.4:72677864-72677883 | MS.gene20017:intron | 25.0% |
| !!! | AGTTCATGTACTTTTTTTGT+AGG | + | chr1.4:72680051-72680070 | MS.gene20017:intron | 25.0% |
| !!! | CAAAGTTGATATCATAATTG+AGG | + | chr1.4:72679076-72679095 | MS.gene20017:intron | 25.0% |
| !!! | GTGTAACTTTTTTTTACCAT+TGG | - | chr1.4:72678308-72678327 | None:intergenic | 25.0% |
| !!! | TAGCTTTTAGAAAATCATTG+TGG | + | chr1.4:72679310-72679329 | MS.gene20017:intron | 25.0% |
| AAAAAACAGAAGTAGGTTGT+TGG | + | chr1.4:72677206-72677225 | MS.gene20017:intron | 30.0% | |
| AAAACACAATAGCCTATGTT+TGG | - | chr1.4:72679366-72679385 | None:intergenic | 30.0% | |
| AACCAGAGAAACATTACAAA+TGG | + | chr1.4:72676987-72677006 | MS.gene20017:intron | 30.0% | |
| AACTAAAATGGTACCCTTTA+TGG | + | chr1.4:72676267-72676286 | MS.gene20017:intron | 30.0% | |
| AACTTGATTATAGGGAAAAC+TGG | - | chr1.4:72680035-72680054 | None:intergenic | 30.0% | |
| AATAGAAATGGTTACAAAGC+TGG | + | chr1.4:72678007-72678026 | MS.gene20017:CDS | 30.0% | |
| ACCAGAGAAACATTACAAAT+GGG | + | chr1.4:72676988-72677007 | MS.gene20017:intron | 30.0% | |
| ACTAGAGAGTAATTCTTAGT+AGG | + | chr1.4:72678787-72678806 | MS.gene20017:intron | 30.0% | |
| ACTCAATGAATTACCAAAAG+TGG | + | chr1.4:72676610-72676629 | MS.gene20017:intron | 30.0% | |
| ACTTCATCACATTTAAAGAG+AGG | + | chr1.4:72678848-72678867 | MS.gene20017:intron | 30.0% | |
| AGAAATAGTTTAGGCCATAA+AGG | - | chr1.4:72676284-72676303 | None:intergenic | 30.0% | |
| AGCAAAAATGGTATATTTGC+AGG | - | chr1.4:72677346-72677365 | None:intergenic | 30.0% | |
| ATTAACTGCAAGCATTAAGA+AGG | - | chr1.4:72678357-72678376 | None:intergenic | 30.0% | |
| CACTTTCTGCATCATATATA+TGG | - | chr1.4:72679778-72679797 | None:intergenic | 30.0% | |
| CAGGTGTATCAATTATCAAT+TGG | + | chr1.4:72677724-72677743 | MS.gene20017:intron | 30.0% | |
| CATCATCATCTAATATCACA+TGG | - | chr1.4:72678552-72678571 | None:intergenic | 30.0% | |
| CATGTGATATTAGATGATGA+TGG | + | chr1.4:72678550-72678569 | MS.gene20017:intron | 30.0% | |
| CATTCCACTTAGTAATATTG+TGG | + | chr1.4:72680075-72680094 | MS.gene20017:intron | 30.0% | |
| CGACATGACATTAATAAAGT+TGG | - | chr1.4:72676214-72676233 | None:intergenic | 30.0% | |
| CGAGAATCAAAAGCAAAAAA+TGG | + | chr1.4:72677578-72677597 | MS.gene20017:intron | 30.0% | |
| GAAATAGTTTAGGCCATAAA+GGG | - | chr1.4:72676283-72676302 | None:intergenic | 30.0% | |
| GAGATAAGGGAAAATAGAAA+TGG | + | chr1.4:72677995-72678014 | MS.gene20017:CDS | 30.0% | |
| GATACGCAACTAAATCATAT+AGG | + | chr1.4:72679001-72679020 | MS.gene20017:intron | 30.0% | |
| GCTCTTAAAATAAAATCAGG+AGG | + | chr1.4:72680206-72680225 | MS.gene20017:CDS | 30.0% | |
| GTACTTTGTACAAGTGTAAT+GGG | - | chr1.4:72676161-72676180 | None:intergenic | 30.0% | |
| GTATCCACAATATTACTAAG+TGG | - | chr1.4:72680082-72680101 | None:intergenic | 30.0% | |
| GTTGCCAAATGAAATTCATT+TGG | - | chr1.4:72676835-72676854 | None:intergenic | 30.0% | |
| TAATTCATTGAGTGTGTCTT+AGG | - | chr1.4:72676603-72676622 | None:intergenic | 30.0% | |
| TGATTACTAGAAGTAAAGCT+AGG | - | chr1.4:72676111-72676130 | None:intergenic | 30.0% | |
| TGTACTTTGTACAAGTGTAA+TGG | - | chr1.4:72676162-72676181 | None:intergenic | 30.0% | |
| TTCAAGGCAATATGGATAAA+AGG | - | chr1.4:72676574-72676593 | None:intergenic | 30.0% | |
| TTGAAAATCAGCATCAAAGA+TGG | - | chr1.4:72678086-72678105 | None:intergenic | 30.0% | |
| ! | AACACTTATAGGTTTGTTTG+AGG | + | chr1.4:72680139-72680158 | MS.gene20017:CDS | 30.0% |
| ! | ACCTCCTTTTCATTATACAT+TGG | - | chr1.4:72677079-72677098 | None:intergenic | 30.0% |
| ! | AGATTTGAAAGTGTGCATTA+TGG | + | chr1.4:72676800-72676819 | MS.gene20017:intron | 30.0% |
| ! | AGTGTACTTTGTCTTTTCAA+AGG | + | chr1.4:72676732-72676751 | MS.gene20017:intron | 30.0% |
| ! | CCTCCTTTTCATTATACATT+GGG | - | chr1.4:72677078-72677097 | None:intergenic | 30.0% |
| ! | TATTGTACATTTTCTCTGCT+TGG | + | chr1.4:72679737-72679756 | MS.gene20017:intron | 30.0% |
| ! | TTTAATAGAGGAGAGTATGT+GGG | + | chr1.4:72679144-72679163 | MS.gene20017:intron | 30.0% |
| !! | ATTAGATGATGATGGTGATA+TGG | + | chr1.4:72678558-72678577 | MS.gene20017:intron | 30.0% |
| !! | TTTTAATAGAGGAGAGTATG+TGG | + | chr1.4:72679143-72679162 | MS.gene20017:intron | 30.0% |
| !!! | GTGTAGTTTTTTTCCACTTT+TGG | - | chr1.4:72676626-72676645 | None:intergenic | 30.0% |
| AAAATACCTTGAGGTCACTA+AGG | - | chr1.4:72678719-72678738 | None:intergenic | 35.0% | |
| AAATCCAATTTCTTGGACCT+GGG | + | chr1.4:72678926-72678945 | MS.gene20017:intron | 35.0% | |
| AAGAATGCAAGAGATGTCAT+TGG | + | chr1.4:72678397-72678416 | MS.gene20017:CDS | 35.0% | |
| AAGGATGATGATATTGAGCT+TGG | + | chr1.4:72677019-72677038 | MS.gene20017:CDS | 35.0% | |
| ACATGGAACATAACTTGAAC+TGG | + | chr1.4:72676494-72676513 | MS.gene20017:intron | 35.0% | |
| ACTACCAACAATTTCAACAC+TGG | - | chr1.4:72676881-72676900 | None:intergenic | 35.0% | |
| AGAGAAACATTACAAATGGG+AGG | + | chr1.4:72676991-72677010 | MS.gene20017:intron | 35.0% | |
| AGATATTCCAAGCCGTATTA+GGG | - | chr1.4:72678503-72678522 | None:intergenic | 35.0% | |
| AGCAAATCTCTTCAGGAAAA+TGG | + | chr1.4:72679633-72679652 | MS.gene20017:CDS | 35.0% | |
| AGTGACCAAATCCAATTTCT+TGG | + | chr1.4:72678919-72678938 | MS.gene20017:intron | 35.0% | |
| AGTTATGAGATATTCTTGGG+TGG | - | chr1.4:72678953-72678972 | None:intergenic | 35.0% | |
| ATAGCCTATGTTTGGTATCA+TGG | - | chr1.4:72679358-72679377 | None:intergenic | 35.0% | |
| ATGGGTAGTTACTGAGAAAT+TGG | + | chr1.4:72680178-72680197 | MS.gene20017:CDS | 35.0% | |
| ATTGGACTATCATTTCCTTG+TGG | + | chr1.4:72678415-72678434 | MS.gene20017:CDS | 35.0% | |
| ATTTCAGCACTAAATGAAGC+TGG | + | chr1.4:72678615-72678634 | MS.gene20017:CDS | 35.0% | |
| ATTTCATTTGGCAACAAGCT+AGG | + | chr1.4:72676840-72676859 | MS.gene20017:intron | 35.0% | |
| CACATAAAACTTCTTCCACA+TGG | - | chr1.4:72679802-72679821 | None:intergenic | 35.0% | |
| CCAATTATTGTGATGCCAAA+TGG | - | chr1.4:72676457-72676476 | None:intergenic | 35.0% | |
| CCATTTGGCATCACAATAAT+TGG | + | chr1.4:72676454-72676473 | MS.gene20017:intron | 35.0% | |
| CCCAATGTATAATGAAAAGG+AGG | + | chr1.4:72677075-72677094 | MS.gene20017:CDS | 35.0% | |
| CGGTAAAGAAAGTTAGATTC+AGG | - | chr1.4:72678109-72678128 | None:intergenic | 35.0% | |
| CGTAGCAACCAATTAAGTTT+GGG | + | chr1.4:72679025-72679044 | MS.gene20017:intron | 35.0% | |
| CTCAACAGATCCAATCATTA+AGG | + | chr1.4:72677804-72677823 | MS.gene20017:CDS | 35.0% | |
| CTCTCTAGTTATTAGGTTCA+TGG | - | chr1.4:72678776-72678795 | None:intergenic | 35.0% | |
| CTTGATCAAAATCCACAAGT+TGG | + | chr1.4:72678142-72678161 | MS.gene20017:CDS | 35.0% | |
| GATAAACCAAATCTGTCTGT+TGG | - | chr1.4:72676238-72676257 | None:intergenic | 35.0% | |
| TAGATATTCCAAGCCGTATT+AGG | - | chr1.4:72678504-72678523 | None:intergenic | 35.0% | |
| TCACTTAATTGCCAACAAGA+GGG | - | chr1.4:72676136-72676155 | None:intergenic | 35.0% | |
| TCCATAACTCATGCTTTCTT+TGG | + | chr1.4:72678452-72678471 | MS.gene20017:CDS | 35.0% | |
| TCCCATTTGTAATGTTTCTC+TGG | - | chr1.4:72676992-72677011 | None:intergenic | 35.0% | |
| TCGTAGCAACCAATTAAGTT+TGG | + | chr1.4:72679024-72679043 | MS.gene20017:intron | 35.0% | |
| TCTACCATGATACCAAACAT+AGG | + | chr1.4:72679351-72679370 | MS.gene20017:intron | 35.0% | |
| TCTTTCTTCTTGTATCCTGT+TGG | - | chr1.4:72676383-72676402 | None:intergenic | 35.0% | |
| TGAGATTTGATGAGATCCAA+TGG | + | chr1.4:72678289-72678308 | MS.gene20017:intron | 35.0% | |
| TGGGTAGTTACTGAGAAATT+GGG | + | chr1.4:72680179-72680198 | MS.gene20017:CDS | 35.0% | |
| TGTATGTTTGGTATCACGAT+GGG | + | chr1.4:72679237-72679256 | MS.gene20017:intron | 35.0% | |
| TTAAATTCCCTAATACGGCT+TGG | + | chr1.4:72678493-72678512 | MS.gene20017:intron | 35.0% | |
| TTCAACACTGGAACTATAAG+TGG | - | chr1.4:72676869-72676888 | None:intergenic | 35.0% | |
| TTCACTTAATTGCCAACAAG+AGG | - | chr1.4:72676137-72676156 | None:intergenic | 35.0% | |
| TTGTATCTAAATCTGGCACA+TGG | + | chr1.4:72676477-72676496 | MS.gene20017:intron | 35.0% | |
| TTTCATTTGGCAACAAGCTA+GGG | + | chr1.4:72676841-72676860 | MS.gene20017:intron | 35.0% | |
| ! | AAATGGATTCAAGAACCAAC+AGG | + | chr1.4:72676365-72676384 | MS.gene20017:intron | 35.0% |
| ! | ACCAAAGAAAGCATGAGTTA+TGG | - | chr1.4:72678456-72678475 | None:intergenic | 35.0% |
| ! | AGTTCCAGTGTTGAAATTGT+TGG | + | chr1.4:72676874-72676893 | MS.gene20017:intron | 35.0% |
| ! | ATACGTTTGCTAGATCCATT+TGG | + | chr1.4:72676439-72676458 | MS.gene20017:intron | 35.0% |
| ! | ATGAAGTGTCAGTTATTGGT+TGG | - | chr1.4:72678835-72678854 | None:intergenic | 35.0% |
| ! | ATTTTCCTGAAGAGATTTGC+TGG | - | chr1.4:72679634-72679653 | None:intergenic | 35.0% |
| ! | CATGCTTTCTTTGGTTTCAA+TGG | + | chr1.4:72678461-72678480 | MS.gene20017:CDS | 35.0% |
| ! | TGGTTCTTGAATCCATTTTG+TGG | - | chr1.4:72676363-72676382 | None:intergenic | 35.0% |
| ! | TGTGATGAAGTGTCAGTTAT+TGG | - | chr1.4:72678839-72678858 | None:intergenic | 35.0% |
| !! | ATTTTGATCAAGGAATGGGA+TGG | - | chr1.4:72678134-72678153 | None:intergenic | 35.0% |
| !! | CAACTTGTGGATTTTGATCA+AGG | - | chr1.4:72678144-72678163 | None:intergenic | 35.0% |
| !! | GTGGATTTTGATCAAGGAAT+GGG | - | chr1.4:72678138-72678157 | None:intergenic | 35.0% |
| !! | TGTGGATTTTGATCAAGGAA+TGG | - | chr1.4:72678139-72678158 | None:intergenic | 35.0% |
| !! | TTTTCCTGAAGAGATTTGCT+GGG | - | chr1.4:72679633-72679652 | None:intergenic | 35.0% |
| AAAGCTGGTGCTCTTAAAGA+AGG | + | chr1.4:72678022-72678041 | MS.gene20017:CDS | 40.0% | |
| ACCAAGAAAGCTTACTGAGA+TGG | + | chr1.4:72676757-72676776 | MS.gene20017:intron | 40.0% | |
| AGAAGTAAAGCTAGGAGAGT+TGG | - | chr1.4:72676103-72676122 | None:intergenic | 40.0% | |
| AGAAGTAGAAGTTCCCAAGT+GGG | + | chr1.4:72679914-72679933 | MS.gene20017:CDS | 40.0% | |
| ATTGATACACCTGCAAGCAA+TGG | - | chr1.4:72677717-72677736 | None:intergenic | 40.0% | |
| CAAATCCAATTTCTTGGACC+TGG | + | chr1.4:72678925-72678944 | MS.gene20017:intron | 40.0% | |
| CAGGTCCAAGAAATTGGATT+TGG | - | chr1.4:72678927-72678946 | None:intergenic | 40.0% | |
| CTATCATTTCCTTGTGGAAC+AGG | + | chr1.4:72678421-72678440 | MS.gene20017:CDS | 40.0% | |
| GAGAATGTGTAACATGCAGT+TGG | - | chr1.4:72676699-72676718 | None:intergenic | 40.0% | |
| GGAGTTACTTCAAGGCAATA+TGG | - | chr1.4:72676582-72676601 | None:intergenic | 40.0% | |
| GGATTTGCACCAAAACCATA+GGG | - | chr1.4:72677057-72677076 | None:intergenic | 40.0% | |
| GTGTATGTTTGGTATCACGA+TGG | + | chr1.4:72679236-72679255 | MS.gene20017:intron | 40.0% | |
| GTGTCTTAGGAGTTACTTCA+AGG | - | chr1.4:72676590-72676609 | None:intergenic | 40.0% | |
| TAGAATGTGAGAGATGGAGA+AGG | + | chr1.4:72677951-72677970 | MS.gene20017:CDS | 40.0% | |
| TAGTAATCACACCCTCTTGT+TGG | + | chr1.4:72676122-72676141 | MS.gene20017:intron | 40.0% | |
| TATCAATTGGAGCTGCATGT+GGG | + | chr1.4:72677737-72677756 | MS.gene20017:CDS | 40.0% | |
| TATGTCAATGCATAGGACCA+AGG | + | chr1.4:72680115-72680134 | MS.gene20017:intron | 40.0% | |
| TCCATCTCAGTAAGCTTTCT+TGG | - | chr1.4:72676761-72676780 | None:intergenic | 40.0% | |
| TCGCTAGACCCAAACTTAAT+TGG | - | chr1.4:72679036-72679055 | None:intergenic | 40.0% | |
| TCTCTTCAGGAAAATGGCAA+TGG | + | chr1.4:72679639-72679658 | MS.gene20017:CDS | 40.0% | |
| TGATATGGTTCATGCATTGC+AGG | + | chr1.4:72678573-72678592 | MS.gene20017:intron | 40.0% | |
| TGGAGATAGAATGTGAGAGA+TGG | + | chr1.4:72677945-72677964 | MS.gene20017:CDS | 40.0% | |
| TGGATAAAAGGTAGTGTGAG+TGG | - | chr1.4:72676562-72676581 | None:intergenic | 40.0% | |
| TTAATGCTGTTGGAACTCCA+AGG | + | chr1.4:72679970-72679989 | MS.gene20017:CDS | 40.0% | |
| TTATCAATTGGAGCTGCATG+TGG | + | chr1.4:72677736-72677755 | MS.gene20017:CDS | 40.0% | |
| TTGGAGTTCCAACAGCATTA+AGG | - | chr1.4:72679971-72679990 | None:intergenic | 40.0% | |
| ! | CAAACCTATAAGTGTTGCCT+TGG | - | chr1.4:72680135-72680154 | None:intergenic | 40.0% |
| ! | CTTATAGGTTTGTTTGAGGC+TGG | + | chr1.4:72680143-72680162 | MS.gene20017:CDS | 40.0% |
| ! | TCTGGAACTAAAACAGTTGC+AGG | - | chr1.4:72679897-72679916 | None:intergenic | 40.0% |
| !! | GTGTAACATGCAGTTGGTTT+TGG | - | chr1.4:72676693-72676712 | None:intergenic | 40.0% |
| !! | TTACAAATGGGAGGCACTTA+AGG | + | chr1.4:72677000-72677019 | MS.gene20017:CDS | 40.0% |
| !!! | TAACATGCAGTTGGTTTTGG+TGG | - | chr1.4:72676690-72676709 | None:intergenic | 40.0% |
| AACCAACTTCCTGTTCCACA+AGG | - | chr1.4:72678433-72678452 | None:intergenic | 45.0% | |
| AGGACCAAGGCAACACTTAT+AGG | + | chr1.4:72680128-72680147 | MS.gene20017:intron | 45.0% | |
| AGGCTGGTAGGGTAAATGAA+TGG | + | chr1.4:72680159-72680178 | MS.gene20017:CDS | 45.0% | |
| ATATAGACAGCACCCCACTT+GGG | - | chr1.4:72679930-72679949 | None:intergenic | 45.0% | |
| CACTAAATGAAGCTGGTGGA+TGG | + | chr1.4:72678622-72678641 | MS.gene20017:CDS | 45.0% | |
| CACTTGGGAACTTCTACTTC+TGG | - | chr1.4:72679915-72679934 | None:intergenic | 45.0% | |
| CAGAAGTAGAAGTTCCCAAG+TGG | + | chr1.4:72679913-72679932 | MS.gene20017:CDS | 45.0% | |
| CCACATGAGCTATGATCTTC+CGG | - | chr1.4:72679845-72679864 | None:intergenic | 45.0% | |
| CCATATCTTCCACTGTTGTG+CGG | - | chr1.4:72678653-72678672 | None:intergenic | 45.0% | |
| GAAGTAGAAGTTCCCAAGTG+GGG | + | chr1.4:72679915-72679934 | MS.gene20017:CDS | 45.0% | |
| GCTTGAACTAGTCCAACTTG+TGG | - | chr1.4:72678157-72678176 | None:intergenic | 45.0% | |
| GGCTGGTAGGGTAAATGAAT+GGG | + | chr1.4:72680160-72680179 | MS.gene20017:CDS | 45.0% | |
| GGGATTTGCACCAAAACCAT+AGG | - | chr1.4:72677058-72677077 | None:intergenic | 45.0% | |
| GTTCAAGCTCGATGGCAATT+CGG | + | chr1.4:72678169-72678188 | MS.gene20017:CDS | 45.0% | |
| TAGTAGGTCACATGACCACA+TGG | + | chr1.4:72678803-72678822 | MS.gene20017:intron | 45.0% | |
| TATATAGACAGCACCCCACT+TGG | - | chr1.4:72679931-72679950 | None:intergenic | 45.0% | |
| TCAGCACTAAATGAAGCTGG+TGG | + | chr1.4:72678618-72678637 | MS.gene20017:CDS | 45.0% | |
| TGATGCAGAAAGTGACCATG+TGG | + | chr1.4:72679784-72679803 | MS.gene20017:intron | 45.0% | |
| TGGAAACTCTGCTTTCCCTA+TGG | + | chr1.4:72677039-72677058 | MS.gene20017:CDS | 45.0% | |
| TGTCGACCAACAGACAGATT+TGG | + | chr1.4:72676229-72676248 | MS.gene20017:intron | 45.0% | |
| TGTGAGAGATGGAGAAGGAA+AGG | + | chr1.4:72677956-72677975 | MS.gene20017:CDS | 45.0% | |
| TGTGTACCTTAGTGACCTCA+AGG | + | chr1.4:72678710-72678729 | MS.gene20017:CDS | 45.0% | |
| TGTTGGCACAATATACGTCG+TGG | + | chr1.4:72677223-72677242 | MS.gene20017:intron | 45.0% | |
| TTCCTTGTGGAACAGGAAGT+TGG | + | chr1.4:72678428-72678447 | MS.gene20017:CDS | 45.0% | |
| ! | AAATGAAGCTGGTGGATGGA+AGG | + | chr1.4:72678626-72678645 | MS.gene20017:CDS | 45.0% |
| ! | ACCACCTGTGTTGCTGATAA+CGG | - | chr1.4:72679603-72679622 | None:intergenic | 45.0% |
| ! | AGGTTTGTTTGAGGCTGGTA+GGG | + | chr1.4:72680148-72680167 | MS.gene20017:CDS | 45.0% |
| ! | ATTGGTTGGTTGTGACCATG+TGG | - | chr1.4:72678821-72678840 | None:intergenic | 45.0% |
| ! | CTCTGCTTTCCCTATGGTTT+TGG | + | chr1.4:72677045-72677064 | MS.gene20017:CDS | 45.0% |
| ! | TAGGTTTGTTTGAGGCTGGT+AGG | + | chr1.4:72680147-72680166 | MS.gene20017:CDS | 45.0% |
| !! | CGGTAGGCTTTGAATGTACT+TGG | - | chr1.4:72679583-72679602 | None:intergenic | 45.0% |
| !! | TTGGACTAGTTCAAGCTCGA+TGG | + | chr1.4:72678161-72678180 | MS.gene20017:CDS | 45.0% |
| !! | TCTATTATTTAAATAAATTT+AGG | + | chr1.4:72679543-72679562 | MS.gene20017:intron | 5.0% |
| !!! | ATTTTATTTTAATTAGTAAA+TGG | - | chr1.4:72679457-72679476 | None:intergenic | 5.0% |
| AAGCCTCGTATCACGATCGA+TGG | + | chr1.4:72680242-72680261 | MS.gene20017:CDS | 50.0% | |
| ACCGTTATCAGCAACACAGG+TGG | + | chr1.4:72679599-72679618 | MS.gene20017:CDS | 50.0% | |
| ACCTGCAAGCAATGGAACAG+TGG | - | chr1.4:72677709-72677728 | None:intergenic | 50.0% | |
| AGATATTCTTGGGTGGTCCC+AGG | - | chr1.4:72678946-72678965 | None:intergenic | 50.0% | |
| CCGCACAACAGTGGAAGATA+TGG | + | chr1.4:72678650-72678669 | MS.gene20017:CDS | 50.0% | |
| CCGGAAGATCATAGCTCATG+TGG | + | chr1.4:72679842-72679861 | MS.gene20017:CDS | 50.0% | |
| CCTACCGTTATCAGCAACAC+AGG | + | chr1.4:72679596-72679615 | MS.gene20017:CDS | 50.0% | |
| CTCGTATCACGATCGATGGA+AGG | + | chr1.4:72680246-72680265 | MS.gene20017:CDS | 50.0% | |
| CTTCCATCGATCGTGATACG+AGG | - | chr1.4:72680248-72680267 | None:intergenic | 50.0% | |
| GATCAAGGAATGGGATGGTG+CGG | - | chr1.4:72678129-72678148 | None:intergenic | 50.0% | |
| TCATGCATTGCAGGTACAGC+TGG | + | chr1.4:72678582-72678601 | MS.gene20017:intron | 50.0% | |
| TGGTCCCAGGTCCAAGAAAT+TGG | - | chr1.4:72678933-72678952 | None:intergenic | 50.0% | |
| TTGCAGGTACAGCTGGTGTT+TGG | + | chr1.4:72678589-72678608 | MS.gene20017:intron | 50.0% | |
| ! | GAGCTGCATGTGGGTTATCA+TGG | + | chr1.4:72677746-72677765 | MS.gene20017:CDS | 50.0% |
| ! | GCAGTACGAGCTAGTCTCAA+AGG | + | chr1.4:72678678-72678697 | MS.gene20017:CDS | 50.0% |
| ! | TACGAGCTAGTCTCAAAGGC+TGG | + | chr1.4:72678682-72678701 | MS.gene20017:CDS | 50.0% |
| !! | CCTGTGTTGCTGATAACGGT+AGG | - | chr1.4:72679599-72679618 | None:intergenic | 50.0% |
| ATGGAAGGACCGCACAACAG+TGG | + | chr1.4:72678641-72678660 | MS.gene20017:CDS | 55.0% | |
| CAGCAACACAGGTGGTCATG+TGG | + | chr1.4:72679607-72679626 | MS.gene20017:CDS | 55.0% | |
| GCCACTGTTCCATTGCTTGC+AGG | + | chr1.4:72677705-72677724 | MS.gene20017:intron | 55.0% | |
| GTGGCCCAGCAAATCTCTTC+AGG | + | chr1.4:72679626-72679645 | MS.gene20017:CDS | 55.0% | |
| GACACGCACGAGCAGTTACG+TGG | + | chr1.4:72677150-72677169 | MS.gene20017:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 72675968 | 72680271 | 72675968 | ID=MS.gene20017 |
| chr1.4 | mRNA | 72675968 | 72680271 | 72675968 | ID=MS.gene20017.t1;Parent=MS.gene20017 |
| chr1.4 | exon | 72675968 | 72675977 | 72675968 | ID=MS.gene20017.t1.exon1;Parent=MS.gene20017.t1 |
| chr1.4 | CDS | 72675968 | 72675977 | 72675968 | ID=cds.MS.gene20017.t1;Parent=MS.gene20017.t1 |
| chr1.4 | exon | 72676993 | 72677096 | 72676993 | ID=MS.gene20017.t1.exon2;Parent=MS.gene20017.t1 |
| chr1.4 | CDS | 72676993 | 72677096 | 72676993 | ID=cds.MS.gene20017.t1;Parent=MS.gene20017.t1 |
| chr1.4 | exon | 72677727 | 72677825 | 72677727 | ID=MS.gene20017.t1.exon3;Parent=MS.gene20017.t1 |
| chr1.4 | CDS | 72677727 | 72677825 | 72677727 | ID=cds.MS.gene20017.t1;Parent=MS.gene20017.t1 |
| chr1.4 | exon | 72677938 | 72678190 | 72677938 | ID=MS.gene20017.t1.exon4;Parent=MS.gene20017.t1 |
| chr1.4 | CDS | 72677938 | 72678190 | 72677938 | ID=cds.MS.gene20017.t1;Parent=MS.gene20017.t1 |
| chr1.4 | exon | 72678372 | 72678482 | 72678372 | ID=MS.gene20017.t1.exon5;Parent=MS.gene20017.t1 |
| chr1.4 | CDS | 72678372 | 72678482 | 72678372 | ID=cds.MS.gene20017.t1;Parent=MS.gene20017.t1 |
| chr1.4 | exon | 72678595 | 72678731 | 72678595 | ID=MS.gene20017.t1.exon6;Parent=MS.gene20017.t1 |
| chr1.4 | CDS | 72678595 | 72678731 | 72678595 | ID=cds.MS.gene20017.t1;Parent=MS.gene20017.t1 |
| chr1.4 | exon | 72679565 | 72679678 | 72679565 | ID=MS.gene20017.t1.exon7;Parent=MS.gene20017.t1 |
| chr1.4 | CDS | 72679565 | 72679678 | 72679565 | ID=cds.MS.gene20017.t1;Parent=MS.gene20017.t1 |
| chr1.4 | exon | 72679792 | 72679991 | 72679792 | ID=MS.gene20017.t1.exon8;Parent=MS.gene20017.t1 |
| chr1.4 | CDS | 72679792 | 72679991 | 72679792 | ID=cds.MS.gene20017.t1;Parent=MS.gene20017.t1 |
| chr1.4 | exon | 72680130 | 72680271 | 72680130 | ID=MS.gene20017.t1.exon9;Parent=MS.gene20017.t1 |
| chr1.4 | CDS | 72680130 | 72680271 | 72680130 | ID=cds.MS.gene20017.t1;Parent=MS.gene20017.t1 |
| Gene Sequence |
| Protein sequence |
