Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20092.t1 | XP_013443370.1 | 91 | 780 | 33 | 4 | 1 | 772 | 1 | 751 | 0.00E+00 | 1122.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20092.t1 | Q9LK27 | 43.7 | 753 | 331 | 17 | 22 | 760 | 33 | 706 | 4.7e-119 | 430.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20092.t1 | A0A072TV39 | 91.0 | 780 | 33 | 4 | 1 | 772 | 1 | 751 | 0.0e+00 | 1122.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene20092 | 0.823084 | 1.68E-53 | -1.69E-46 |
| MS.gene049824 | MS.gene20092 | 0.800949 | 1.13E-48 | -1.69E-46 |
| MS.gene049873 | MS.gene20092 | 0.802541 | 5.34E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene20092 | 0.809006 | 2.34E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene20092 | 0.805609 | 1.23E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene20092 | 0.802105 | 6.57E-49 | -1.69E-46 |
| MS.gene053195 | MS.gene20092 | 0.810891 | 9.20E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene20092 | 0.814341 | 1.62E-51 | -1.69E-46 |
| MS.gene053541 | MS.gene20092 | 0.806721 | 7.17E-50 | -1.69E-46 |
| MS.gene053542 | MS.gene20092 | 0.814686 | 1.36E-51 | -1.69E-46 |
| MS.gene05364 | MS.gene20092 | 0.826328 | 2.88E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene20092 | 0.81626 | 6.06E-52 | -1.69E-46 |
| MS.gene055694 | MS.gene20092 | 0.827364 | 1.63E-54 | -1.69E-46 |
| MS.gene05686 | MS.gene20092 | 0.811622 | 6.39E-51 | -1.69E-46 |
| MS.gene058009 | MS.gene20092 | 0.809896 | 1.51E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene20092 | 0.814006 | 1.92E-51 | -1.69E-46 |
| MS.gene059625 | MS.gene20092 | 0.809382 | 1.95E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene20092 | 0.803463 | 3.45E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20092.t1 | MTR_0018s0090 | 91.923 | 780 | 26 | 4 | 1 | 772 | 1 | 751 | 0.0 | 1287 |
| MS.gene20092.t1 | MTR_0018s0090 | 90.263 | 647 | 26 | 4 | 1 | 639 | 1 | 618 | 0.0 | 1063 |
| MS.gene20092.t1 | MTR_3g075040 | 45.398 | 804 | 359 | 20 | 1 | 772 | 24 | 779 | 1.02e-164 | 495 |
| MS.gene20092.t1 | MTR_3g075040 | 41.022 | 646 | 303 | 18 | 1 | 615 | 24 | 622 | 2.19e-123 | 383 |
| MS.gene20092.t1 | MTR_2g091135 | 35.985 | 264 | 145 | 6 | 191 | 432 | 305 | 566 | 2.15e-42 | 164 |
| MS.gene20092.t1 | MTR_2g091135 | 35.985 | 264 | 145 | 6 | 191 | 432 | 305 | 566 | 2.46e-42 | 164 |
| MS.gene20092.t1 | MTR_2g018270 | 61.386 | 101 | 39 | 0 | 197 | 297 | 83 | 183 | 4.77e-37 | 146 |
| MS.gene20092.t1 | MTR_2g018270 | 41.714 | 175 | 84 | 6 | 587 | 753 | 335 | 499 | 6.25e-21 | 97.8 |
| MS.gene20092.t1 | MTR_4g079650 | 37.768 | 233 | 112 | 7 | 191 | 394 | 653 | 881 | 2.94e-35 | 144 |
| MS.gene20092.t1 | MTR_4g079650 | 41.206 | 199 | 94 | 4 | 191 | 370 | 653 | 847 | 3.04e-35 | 144 |
| MS.gene20092.t1 | MTR_4g079650 | 37.768 | 233 | 112 | 7 | 191 | 394 | 653 | 881 | 4.50e-35 | 144 |
| MS.gene20092.t1 | MTR_4g092900 | 31.476 | 359 | 170 | 13 | 194 | 492 | 145 | 487 | 1.00e-33 | 136 |
| MS.gene20092.t1 | MTR_4g092880 | 32.286 | 350 | 151 | 12 | 194 | 492 | 149 | 463 | 1.41e-33 | 136 |
| MS.gene20092.t1 | MTR_2g091130 | 32.565 | 347 | 188 | 10 | 191 | 509 | 294 | 622 | 2.11e-33 | 137 |
| MS.gene20092.t1 | MTR_4g092880 | 54.286 | 105 | 48 | 0 | 194 | 298 | 149 | 253 | 3.27e-31 | 127 |
| MS.gene20092.t1 | MTR_4g092900 | 30.500 | 400 | 191 | 14 | 194 | 522 | 145 | 528 | 2.52e-29 | 123 |
| MS.gene20092.t1 | MTR_8g070660 | 36.735 | 196 | 99 | 7 | 108 | 298 | 26 | 201 | 1.45e-23 | 101 |
| MS.gene20092.t1 | MTR_8g070660 | 36.735 | 196 | 99 | 7 | 108 | 298 | 26 | 201 | 3.76e-23 | 102 |
| MS.gene20092.t1 | MTR_6g033375 | 27.189 | 217 | 153 | 3 | 200 | 412 | 75 | 290 | 2.98e-21 | 96.3 |
| MS.gene20092.t1 | MTR_2g437920 | 43.434 | 99 | 53 | 3 | 208 | 303 | 146 | 244 | 2.95e-16 | 82.0 |
| MS.gene20092.t1 | MTR_5g069490 | 29.596 | 223 | 122 | 8 | 206 | 416 | 111 | 310 | 2.18e-15 | 79.0 |
| MS.gene20092.t1 | MTR_8g062330 | 40.206 | 97 | 55 | 2 | 199 | 294 | 345 | 439 | 1.38e-12 | 70.9 |
| MS.gene20092.t1 | MTR_3g052530 | 37.391 | 115 | 69 | 2 | 200 | 314 | 158 | 269 | 1.71e-12 | 71.6 |
| MS.gene20092.t1 | MTR_3g052530 | 37.391 | 115 | 69 | 2 | 200 | 314 | 161 | 272 | 2.28e-12 | 71.2 |
| MS.gene20092.t1 | MTR_3g052530 | 37.391 | 115 | 69 | 2 | 200 | 314 | 158 | 269 | 2.30e-12 | 71.2 |
| MS.gene20092.t1 | MTR_3g052530 | 40.594 | 101 | 57 | 2 | 200 | 300 | 158 | 255 | 6.48e-12 | 69.7 |
| MS.gene20092.t1 | MTR_3g052530 | 40.594 | 101 | 57 | 2 | 200 | 300 | 161 | 258 | 6.90e-12 | 69.7 |
| MS.gene20092.t1 | MTR_3g052530 | 40.594 | 101 | 57 | 2 | 200 | 300 | 158 | 255 | 7.25e-12 | 69.7 |
| MS.gene20092.t1 | MTR_5g093070 | 39.423 | 104 | 60 | 2 | 200 | 303 | 207 | 307 | 8.89e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20092.t1 | AT3G27260 | 44.260 | 784 | 344 | 19 | 8 | 772 | 9 | 718 | 1.15e-174 | 519 |
| MS.gene20092.t1 | AT5G14270 | 44.231 | 728 | 317 | 10 | 50 | 772 | 45 | 688 | 4.96e-173 | 514 |
| MS.gene20092.t1 | AT5G14270 | 44.231 | 728 | 317 | 10 | 50 | 772 | 45 | 688 | 4.96e-173 | 514 |
| MS.gene20092.t1 | AT5G14270 | 44.170 | 729 | 317 | 11 | 50 | 772 | 45 | 689 | 5.15e-172 | 511 |
| MS.gene20092.t1 | AT3G27260 | 43.669 | 774 | 343 | 19 | 8 | 762 | 9 | 708 | 1.64e-166 | 501 |
| MS.gene20092.t1 | AT3G27260 | 59.649 | 57 | 23 | 0 | 716 | 772 | 757 | 813 | 2.36e-11 | 67.8 |
| MS.gene20092.t1 | AT3G27260 | 43.367 | 784 | 340 | 20 | 8 | 762 | 9 | 717 | 1.02e-165 | 499 |
| MS.gene20092.t1 | AT3G27260 | 59.649 | 57 | 23 | 0 | 716 | 772 | 766 | 822 | 2.43e-11 | 67.8 |
| MS.gene20092.t1 | AT3G27260 | 44.323 | 731 | 326 | 15 | 41 | 762 | 1 | 659 | 5.52e-164 | 493 |
| MS.gene20092.t1 | AT3G27260 | 59.649 | 57 | 23 | 0 | 716 | 772 | 708 | 764 | 2.28e-11 | 67.8 |
| MS.gene20092.t1 | AT5G63320 | 41.168 | 719 | 345 | 15 | 51 | 747 | 55 | 717 | 2.18e-124 | 398 |
| MS.gene20092.t1 | AT3G01770 | 37.793 | 725 | 311 | 16 | 49 | 772 | 35 | 620 | 3.80e-119 | 372 |
| MS.gene20092.t1 | AT5G63320 | 37.978 | 445 | 219 | 8 | 51 | 494 | 55 | 443 | 4.79e-83 | 273 |
| MS.gene20092.t1 | AT5G63320 | 37.978 | 445 | 219 | 8 | 51 | 494 | 55 | 443 | 4.79e-83 | 273 |
| MS.gene20092.t1 | AT3G01770 | 38.255 | 447 | 201 | 10 | 49 | 494 | 35 | 407 | 7.17e-82 | 270 |
| MS.gene20092.t1 | AT1G06230 | 35.156 | 256 | 139 | 4 | 189 | 419 | 417 | 670 | 1.38e-36 | 148 |
| MS.gene20092.t1 | AT1G06230 | 35.156 | 256 | 139 | 4 | 189 | 419 | 417 | 670 | 1.38e-36 | 148 |
| MS.gene20092.t1 | AT1G06230 | 35.156 | 256 | 139 | 4 | 189 | 419 | 417 | 670 | 1.38e-36 | 148 |
| MS.gene20092.t1 | AT1G06230 | 35.156 | 256 | 139 | 4 | 189 | 419 | 417 | 670 | 1.38e-36 | 148 |
| MS.gene20092.t1 | AT1G73150 | 34.328 | 268 | 138 | 8 | 193 | 427 | 119 | 381 | 1.21e-34 | 137 |
| MS.gene20092.t1 | AT1G73150 | 34.328 | 268 | 138 | 8 | 193 | 427 | 119 | 381 | 1.33e-34 | 138 |
| MS.gene20092.t1 | AT5G46550 | 55.446 | 101 | 45 | 0 | 197 | 297 | 73 | 173 | 1.50e-32 | 132 |
| MS.gene20092.t1 | AT5G65630 | 51.887 | 106 | 51 | 0 | 193 | 298 | 169 | 274 | 2.64e-29 | 124 |
| MS.gene20092.t1 | AT1G17790 | 50.485 | 103 | 51 | 0 | 193 | 295 | 132 | 234 | 1.33e-28 | 120 |
| MS.gene20092.t1 | AT5G10550 | 48.113 | 106 | 55 | 0 | 193 | 298 | 174 | 279 | 7.95e-27 | 116 |
| MS.gene20092.t1 | AT2G34900 | 40.952 | 105 | 62 | 0 | 194 | 298 | 1 | 105 | 1.20e-23 | 102 |
| MS.gene20092.t1 | AT2G34900 | 40.566 | 106 | 63 | 0 | 193 | 298 | 110 | 215 | 3.31e-23 | 103 |
| MS.gene20092.t1 | AT3G52280 | 35.780 | 109 | 67 | 1 | 193 | 298 | 94 | 202 | 1.00e-16 | 83.2 |
| MS.gene20092.t1 | AT3G52280 | 35.780 | 109 | 67 | 1 | 193 | 298 | 111 | 219 | 1.70e-16 | 82.8 |
| MS.gene20092.t1 | AT5G55040 | 37.615 | 109 | 66 | 1 | 192 | 300 | 186 | 292 | 6.22e-11 | 66.6 |
| MS.gene20092.t1 | AT5G55040 | 37.615 | 109 | 66 | 1 | 192 | 300 | 186 | 292 | 6.22e-11 | 66.6 |
Find 174 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGAGAATTCTCAATTTC+TGG | 0.142786 | 7.3:-60717731 | MS.gene20092:CDS |
| TTCTCAATTTCTGGAAGATT+TGG | 0.199570 | 7.3:-60717722 | MS.gene20092:CDS |
| CCCTCTTCTACATCATTTAC+AGG | 0.202461 | 7.3:+60717517 | None:intergenic |
| GCAATTCGATAAAGTTTATC+AGG | 0.210697 | 7.3:+60718327 | None:intergenic |
| TCATCGTTGCAAGCATTTAA+AGG | 0.216922 | 7.3:-60724778 | MS.gene20092:intron |
| TCTACATCATTTACAGGATT+TGG | 0.229751 | 7.3:+60717523 | None:intergenic |
| GTTCAAATTACGAAAGCTTT+TGG | 0.232454 | 7.3:-60725028 | MS.gene20092:CDS |
| TGTGTTACTTTGATCAATTC+AGG | 0.241360 | 7.3:-60726143 | MS.gene20092:CDS |
| GCACCAGTGCTTATAATTTC+TGG | 0.247066 | 7.3:+60721156 | None:intergenic |
| GATGAAGAGGTCAACATTAT+TGG | 0.261522 | 7.3:-60724665 | MS.gene20092:CDS |
| TTGAGGAGGAGGGATAATTT+TGG | 0.296813 | 7.3:+60725245 | None:intergenic |
| GCAAAATATTGGTAGAGAAT+TGG | 0.307401 | 7.3:-60725175 | MS.gene20092:CDS |
| CATAACGCATCCTATGGATT+TGG | 0.321260 | 7.3:-60725565 | MS.gene20092:CDS |
| ATCAGTGAATTTGCAGTTCC+AGG | 0.325521 | 7.3:+60725699 | None:intergenic |
| TGATTTCCTCGAGGTTTCTA+TGG | 0.328466 | 7.3:+60725824 | None:intergenic |
| TTCACTGGTGTTTGTCTTCG+TGG | 0.358694 | 7.3:+60725335 | None:intergenic |
| TAAGGGTATCAGCCATGATA+TGG | 0.360072 | 7.3:+60725427 | None:intergenic |
| AGTTATCCCACCTGCTAAAC+TGG | 0.360870 | 7.3:-60725217 | MS.gene20092:CDS |
| CTCAAGCTCCCTCTTTCGTC+TGG | 0.363863 | 7.3:+60717888 | None:intergenic |
| ATGGCTAAGAGTAGGCATTC+TGG | 0.364929 | 7.3:-60726254 | MS.gene20092:CDS |
| TGTACTGAAGAAGATATTGA+TGG | 0.370764 | 7.3:+60725867 | None:intergenic |
| CTGTTGATGAAGCACAAATT+TGG | 0.376302 | 7.3:-60725648 | MS.gene20092:CDS |
| GGGATGGGTAGTTTCAAGTT+TGG | 0.383638 | 7.3:-60717625 | MS.gene20092:CDS |
| TCGTTTCGAAATATTTACTA+AGG | 0.383833 | 7.3:+60725409 | None:intergenic |
| ATGATATGGACATCAGTCTT+AGG | 0.401384 | 7.3:+60725441 | None:intergenic |
| GACTTGAACATTTACTCGTT+TGG | 0.402940 | 7.3:+60724552 | None:intergenic |
| TTGAAAGAACATAGTTCAAA+TGG | 0.405523 | 7.3:-60725111 | MS.gene20092:CDS |
| ATAACGCATCCTATGGATTT+GGG | 0.423894 | 7.3:-60725564 | MS.gene20092:CDS |
| TGGGTAGTTTCAAGTTTGGT+GGG | 0.424393 | 7.3:-60717621 | MS.gene20092:CDS |
| AAGCTCAGACTTAAACCTAT+TGG | 0.425510 | 7.3:+60726043 | None:intergenic |
| AAAGAAAACAGCTTGCCAAT+AGG | 0.429039 | 7.3:-60726058 | MS.gene20092:CDS |
| CAGGCACGAACTTGTTTGCC+TGG | 0.434968 | 7.3:-60725717 | MS.gene20092:CDS |
| ATAACTTGAGGTTGAGGAGG+AGG | 0.435617 | 7.3:+60725234 | None:intergenic |
| AATCAAGAGAGGCAAAATAT+TGG | 0.437241 | 7.3:-60725186 | MS.gene20092:CDS |
| TTTCAAATGCAAAAGAGAAA+TGG | 0.446091 | 7.3:-60725993 | MS.gene20092:CDS |
| GACAAAGGAACAAGTTGCAT+TGG | 0.446112 | 7.3:+60726098 | None:intergenic |
| ATGGGTAGTTTCAAGTTTGG+TGG | 0.448417 | 7.3:-60717622 | MS.gene20092:CDS |
| CAGTGTCATAACGCATCCTA+TGG | 0.450024 | 7.3:-60725571 | MS.gene20092:CDS |
| TGAACGGAAGCAGATATTGA+AGG | 0.454607 | 7.3:+60725906 | None:intergenic |
| GTTTAAGTCTGAGCTTGAAC+GGG | 0.456800 | 7.3:-60726036 | MS.gene20092:CDS |
| AACGGTGGAGAATCATTTCT+AGG | 0.460214 | 7.3:+60725360 | None:intergenic |
| GGTGGTTTGTACATCTTCAC+TGG | 0.460901 | 7.3:+60725320 | None:intergenic |
| TAATGGCTTGGATAAATTTG+AGG | 0.461994 | 7.3:-60718521 | MS.gene20092:CDS |
| TCACTGGTGTTTGTCTTCGT+GGG | 0.464210 | 7.3:+60725336 | None:intergenic |
| ACAGGAGGATGGCTCGTGAC+AGG | 0.468032 | 7.3:+60724599 | None:intergenic |
| TGTTTCCGAGGAGGAGGAGG+TGG | 0.470810 | 7.3:-60726180 | MS.gene20092:CDS |
| TTTAGAAGGAGGCATTGGTC+TGG | 0.472306 | 7.3:+60725299 | None:intergenic |
| TTGAGAGTCAGTTAATGGCT+TGG | 0.473713 | 7.3:-60718533 | MS.gene20092:intron |
| AACGGTTTCAATTTATTCCC+TGG | 0.475915 | 7.3:+60725798 | None:intergenic |
| AGATCCTGAGAAAATGCATC+TGG | 0.475942 | 7.3:-60718120 | MS.gene20092:CDS |
| CATAGTTCAAATGGTAAAGA+AGG | 0.484879 | 7.3:-60725102 | MS.gene20092:CDS |
| TGCACGACAGGCACTGCTAC+AGG | 0.491106 | 7.3:-60717857 | MS.gene20092:intron |
| TACTGTTTCCGAGGAGGAGG+AGG | 0.491722 | 7.3:-60726183 | MS.gene20092:CDS |
| GGGAATAAATTGAAACCGTT+AGG | 0.493247 | 7.3:-60725795 | MS.gene20092:CDS |
| TTCGACATAACCAGTTTAGC+AGG | 0.495088 | 7.3:+60725207 | None:intergenic |
| TAACTTGAGGTTGAGGAGGA+GGG | 0.499619 | 7.3:+60725235 | None:intergenic |
| GAACATGGTAATTGCTCAGC+AGG | 0.502352 | 7.3:+60717682 | None:intergenic |
| TTCAACTTAACCACATCCAC+AGG | 0.502751 | 7.3:+60725609 | None:intergenic |
| AGGAGGAGGTGGAGGATACT+CGG | 0.506198 | 7.3:-60726169 | MS.gene20092:CDS |
| TCAGGTCGACGAGGGGCGTA+TGG | 0.506447 | 7.3:-60726125 | MS.gene20092:CDS |
| GTTATGACACTGAAATAGTC+AGG | 0.508133 | 7.3:+60725582 | None:intergenic |
| AGAAGGAGGCATTGGTCTGG+TGG | 0.508164 | 7.3:+60725302 | None:intergenic |
| TGGAATTTGCTGCTGATGTG+AGG | 0.509245 | 7.3:-60725497 | MS.gene20092:CDS |
| TGTACTGTTCCCAAATCCAT+AGG | 0.509426 | 7.3:+60725555 | None:intergenic |
| TATAAGCACTGGTGCTCAGA+TGG | 0.510021 | 7.3:-60721148 | MS.gene20092:CDS |
| GGTTGTGGTTAGGGTGTGAA+GGG | 0.510992 | 7.3:-60718143 | MS.gene20092:intron |
| GTAAATATTTCGAAACGAGA+TGG | 0.511284 | 7.3:-60725404 | MS.gene20092:CDS |
| TTCCGAGGAGGAGGAGGTGG+AGG | 0.512355 | 7.3:-60726177 | MS.gene20092:CDS |
| AGTTGAAGCATGTGAAATAG+AGG | 0.512491 | 7.3:-60724968 | MS.gene20092:intron |
| TGGTTGTGGTTAGGGTGTGA+AGG | 0.512870 | 7.3:-60718144 | MS.gene20092:intron |
| TGAACATTTACTCGTTTGGT+AGG | 0.513583 | 7.3:+60724556 | None:intergenic |
| GATGAAGCACAAATTTGGTT+GGG | 0.516359 | 7.3:-60725643 | MS.gene20092:CDS |
| GTGTTTGTCTTCGTGGGCAA+CGG | 0.519404 | 7.3:+60725342 | None:intergenic |
| GGTCAACATTATTGGAAATG+AGG | 0.520393 | 7.3:-60724657 | MS.gene20092:CDS |
| GTCCTGATGACTCTCAGAAT+GGG | 0.520588 | 7.3:-60717645 | MS.gene20092:CDS |
| ACGAGTAAATGTTCAAGTCC+AGG | 0.522410 | 7.3:-60724548 | MS.gene20092:CDS |
| ATCCCATTCTGAGAGTCATC+AGG | 0.522555 | 7.3:+60717643 | None:intergenic |
| TGAGAGACAAGCTGCACGAC+AGG | 0.522930 | 7.3:-60717869 | MS.gene20092:CDS |
| GTTGAGGATGAAGAGGAAGA+AGG | 0.523131 | 7.3:-60717562 | MS.gene20092:CDS |
| AAGAAATCAATGATGTAAGC+AGG | 0.523745 | 7.3:+60725132 | None:intergenic |
| GTTTGGTGGGAGTAATCCCT+TGG | 0.524182 | 7.3:-60717608 | MS.gene20092:CDS |
| TTGGAGATGGAACGACGAAA+AGG | 0.525311 | 7.3:-60718086 | MS.gene20092:intron |
| ACAGGATTTGGAACACAAAG+TGG | 0.526603 | 7.3:+60717535 | None:intergenic |
| AAGCCTCGTGGATGGAATAG+AGG | 0.526795 | 7.3:-60725762 | MS.gene20092:CDS |
| GTACAAAACAAGATTGCTAA+AGG | 0.529289 | 7.3:-60725537 | MS.gene20092:CDS |
| TCCTCCTGTAGTGATTGAAA+AGG | 0.529502 | 7.3:-60724585 | MS.gene20092:CDS |
| CAGGAGGATGGCTCGTGACA+GGG | 0.532677 | 7.3:+60724600 | None:intergenic |
| CCACACTTACCACTGCTCCC+TGG | 0.534511 | 7.3:+60724530 | None:intergenic |
| ACTTACTGTTTCCGAGGAGG+AGG | 0.534737 | 7.3:-60726186 | MS.gene20092:CDS |
| TTGTGGAAAGTTTGAGACTC+AGG | 0.534785 | 7.3:-60725736 | MS.gene20092:CDS |
| AGGATCATACACAGGCCCAT+TGG | 0.535323 | 7.3:-60725517 | MS.gene20092:CDS |
| TGCTGAAGAAGCTAGAAAGC+GGG | 0.537428 | 7.3:-60717935 | MS.gene20092:CDS |
| AATAAATAATGGCTAAGAGT+AGG | 0.537756 | 7.3:-60726262 | None:intergenic |
| TTTGCATGTAGGTAATGATC+CGG | 0.538992 | 7.3:-60724690 | MS.gene20092:intron |
| AGTCCTGATGACTCTCAGAA+TGG | 0.541291 | 7.3:-60717646 | MS.gene20092:CDS |
| ACATCAGCAGCAAATTCCAA+TGG | 0.541597 | 7.3:+60725501 | None:intergenic |
| TCCTGTAAATGATGTAGAAG+AGG | 0.542521 | 7.3:-60717518 | MS.gene20092:CDS |
| CGTTTCGAAATATTTACTAA+GGG | 0.543275 | 7.3:+60725410 | None:intergenic |
| AGGATTGTATATTAAAGTTG+AGG | 0.543967 | 7.3:-60717578 | MS.gene20092:CDS |
| ACCTCGAGGAAATCAGTACC+AGG | 0.544906 | 7.3:-60725816 | MS.gene20092:CDS |
| ATCCTCCACCTCCTCCTCCT+CGG | 0.544913 | 7.3:+60726175 | None:intergenic |
| TACAATCCTAGTTGTTCCAA+GGG | 0.548264 | 7.3:+60717592 | None:intergenic |
| TAAGACTGATGTCCATATCA+TGG | 0.549025 | 7.3:-60725439 | MS.gene20092:CDS |
| TGATCAATTCAGGTCGACGA+GGG | 0.549809 | 7.3:-60726133 | MS.gene20092:CDS |
| CTTGTCTCGTCCACAGAACA+TGG | 0.550433 | 7.3:+60717667 | None:intergenic |
| TATTAAAGTTGAGGATGAAG+AGG | 0.551254 | 7.3:-60717569 | MS.gene20092:CDS |
| CCTGTAAATGATGTAGAAGA+GGG | 0.552075 | 7.3:-60717517 | MS.gene20092:CDS |
| GATGAAGAGGTGGACATTTG+TGG | 0.553282 | 7.3:-60724632 | MS.gene20092:CDS |
| ATGTTGACCTCTTCATCAGC+CGG | 0.554476 | 7.3:+60724671 | None:intergenic |
| TGATGAAGCACAAATTTGGT+TGG | 0.558662 | 7.3:-60725644 | MS.gene20092:CDS |
| GTACCAGAAATTATAAGCAC+TGG | 0.559163 | 7.3:-60721159 | MS.gene20092:CDS |
| CTGCGGAATCCAGACGAAAG+AGG | 0.562866 | 7.3:-60717897 | MS.gene20092:CDS |
| TTTGTCTTCGTGGGCAACGG+TGG | 0.563282 | 7.3:+60725345 | None:intergenic |
| GGTGGGATAACTTGAGGTTG+AGG | 0.564668 | 7.3:+60725228 | None:intergenic |
| GACTATGATAGCTTTCAAGA+TGG | 0.566283 | 7.3:-60718469 | MS.gene20092:intron |
| TGATGACTCTCAGAATGGGA+TGG | 0.566701 | 7.3:-60717641 | MS.gene20092:CDS |
| GGTTTAAGTCTGAGCTTGAA+CGG | 0.568375 | 7.3:-60726037 | MS.gene20092:CDS |
| CATCAGCAGCAAATTCCAAT+GGG | 0.568510 | 7.3:+60725502 | None:intergenic |
| CGAGTAAATGTTCAAGTCCA+GGG | 0.568800 | 7.3:-60724547 | MS.gene20092:CDS |
| GGCTTATGAGTCTGACCTAA+CGG | 0.569739 | 7.3:+60725780 | None:intergenic |
| CAATTCGATAAAGTTTATCA+GGG | 0.569763 | 7.3:+60718328 | None:intergenic |
| TACTGAACTTACTGTTTCCG+AGG | 0.570048 | 7.3:-60726192 | MS.gene20092:CDS |
| TTCAGAAGTATGAGCAGCAG+TGG | 0.570546 | 7.3:+60721116 | None:intergenic |
| ATACAATCCTAGTTGTTCCA+AGG | 0.572163 | 7.3:+60717591 | None:intergenic |
| TGCGGAATCCAGACGAAAGA+GGG | 0.572514 | 7.3:-60717896 | MS.gene20092:CDS |
| GGATGGAATAGAGGCACTTG+TGG | 0.578022 | 7.3:-60725753 | MS.gene20092:CDS |
| TAATGATCCGGCTGATGAAG+AGG | 0.578523 | 7.3:-60724678 | MS.gene20092:CDS |
| TTAGCAGGTGGGATAACTTG+AGG | 0.578736 | 7.3:+60725222 | None:intergenic |
| GGCAGAAGAAGAAGCTGCTG+CGG | 0.580854 | 7.3:-60717914 | MS.gene20092:CDS |
| GCTTGCAACGATGAATTGCT+TGG | 0.582867 | 7.3:+60724787 | None:intergenic |
| GGGATAACTTGAGGTTGAGG+AGG | 0.584461 | 7.3:+60725231 | None:intergenic |
| AGTCGTTGTATCCGATGGCT+CGG | 0.586025 | 7.3:-60726216 | MS.gene20092:CDS |
| GATGACTCTCAGAATGGGAT+GGG | 0.590499 | 7.3:-60717640 | MS.gene20092:CDS |
| AGACTCATAAGCCTCGTGGA+TGG | 0.590607 | 7.3:-60725770 | MS.gene20092:CDS |
| TTTCAATCACTACAGGAGGA+TGG | 0.592776 | 7.3:+60724588 | None:intergenic |
| TGATGATGAAGCAATACCAC+AGG | 0.595206 | 7.3:-60723261 | MS.gene20092:CDS |
| TGGAAATGAGGCTGATGAAG+AGG | 0.597555 | 7.3:-60724645 | MS.gene20092:CDS |
| AAGGCTACAAGCAGAAGCGA+AGG | 0.598802 | 7.3:-60717959 | MS.gene20092:CDS |
| TCAATATCTTCTTCAGTACA+AGG | 0.599256 | 7.3:-60725864 | MS.gene20092:CDS |
| AAGTTCAGTAGCCGAGCCAT+CGG | 0.604973 | 7.3:+60726205 | None:intergenic |
| CCCTGGTACTGATTTCCTCG+AGG | 0.606341 | 7.3:+60725815 | None:intergenic |
| AATACCACAGGATTTATCAA+AGG | 0.612132 | 7.3:-60723249 | MS.gene20092:intron |
| TGTTCAAGTCCAGGGAGCAG+TGG | 0.614725 | 7.3:-60724539 | MS.gene20092:intron |
| AGGAGGATGGCTCGTGACAG+GGG | 0.616238 | 7.3:+60724601 | None:intergenic |
| GATCAATTCAGGTCGACGAG+GGG | 0.617702 | 7.3:-60726132 | MS.gene20092:CDS |
| ATTGCAGATTCGGACTCTAG+TGG | 0.618288 | 7.3:-60723302 | MS.gene20092:intron |
| TCAAGTTGTCTATTTGACCA+CGG | 0.619949 | 7.3:+60725934 | None:intergenic |
| TCGAGAAAAGACACTGACCC+AGG | 0.622144 | 7.3:-60718265 | MS.gene20092:intron |
| GACATAACCAGTTTAGCAGG+TGG | 0.626935 | 7.3:+60725210 | None:intergenic |
| TGTAAATGATGTAGAAGAGG+GGG | 0.628070 | 7.3:-60717515 | MS.gene20092:CDS |
| ATTCTTGAGCAGAAAAGGCA+AGG | 0.631468 | 7.3:-60717978 | MS.gene20092:intron |
| ATATGGACATCAGTCTTAGG+TGG | 0.634512 | 7.3:+60725444 | None:intergenic |
| ACATAACCAGTTTAGCAGGT+GGG | 0.635920 | 7.3:+60725211 | None:intergenic |
| AGTAATCCCTTGGAACAACT+AGG | 0.636386 | 7.3:-60717598 | MS.gene20092:CDS |
| TCAACTTAACCACATCCACA+GGG | 0.640140 | 7.3:+60725610 | None:intergenic |
| GAAACAGTCGTTGTATCCGA+TGG | 0.640912 | 7.3:-60726221 | MS.gene20092:CDS |
| GGTCAGACTCATAAGCCTCG+TGG | 0.657744 | 7.3:-60725774 | MS.gene20092:CDS |
| TTGATCAATTCAGGTCGACG+AGG | 0.659743 | 7.3:-60726134 | MS.gene20092:CDS |
| TGAACTTACTGTTTCCGAGG+AGG | 0.660482 | 7.3:-60726189 | MS.gene20092:CDS |
| AAATGAGGCTGATGAAGAGG+TGG | 0.664901 | 7.3:-60724642 | MS.gene20092:CDS |
| TGGTTATGTCGAATCAAGAG+AGG | 0.666624 | 7.3:-60725197 | MS.gene20092:CDS |
| CTGCTGAAGAAGCTAGAAAG+CGG | 0.666877 | 7.3:-60717936 | MS.gene20092:CDS |
| ATATTAATATCACTAGAAGA+CGG | 0.668747 | 7.3:+60725960 | None:intergenic |
| CTGTAAATGATGTAGAAGAG+GGG | 0.674177 | 7.3:-60717516 | MS.gene20092:CDS |
| AGTGATATTAATATCAACCG+TGG | 0.675985 | 7.3:-60725951 | MS.gene20092:CDS |
| ATTGCTAAAGGATCATACAC+AGG | 0.681908 | 7.3:-60725525 | MS.gene20092:CDS |
| CAGACCTTTGATAAATCCTG+TGG | 0.684227 | 7.3:+60723245 | None:intergenic |
| GCTAAGAGTAGGCATTCTGG+AGG | 0.694361 | 7.3:-60726251 | MS.gene20092:CDS |
| AATTCGATAAAGTTTATCAG+GGG | 0.701078 | 7.3:+60718329 | None:intergenic |
| CCTCGAGGAAATCAGTACCA+GGG | 0.711757 | 7.3:-60725815 | MS.gene20092:CDS |
| AAACATCCATAGAAACCTCG+AGG | 0.714436 | 7.3:-60725830 | MS.gene20092:CDS |
| TGAGCAATTACCATGTTCTG+TGG | 0.724551 | 7.3:-60717677 | MS.gene20092:CDS |
| CAACTTAACCACATCCACAG+GGG | 0.763085 | 7.3:+60725611 | None:intergenic |
| GTGCCTCTATTCCATCCACG+AGG | 0.777083 | 7.3:+60725759 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 60717504 | 60726276 | 60717504 | ID=MS.gene20092 |
| chr7.3 | mRNA | 60717504 | 60726276 | 60717504 | ID=MS.gene20092.t1;Parent=MS.gene20092 |
| chr7.3 | exon | 60724969 | 60726276 | 60724969 | ID=MS.gene20092.t1.exon1;Parent=MS.gene20092.t1 |
| chr7.3 | CDS | 60724969 | 60726276 | 60724969 | ID=cds.MS.gene20092.t1;Parent=MS.gene20092.t1 |
| chr7.3 | exon | 60724779 | 60724827 | 60724779 | ID=MS.gene20092.t1.exon2;Parent=MS.gene20092.t1 |
| chr7.3 | CDS | 60724779 | 60724827 | 60724779 | ID=cds.MS.gene20092.t1;Parent=MS.gene20092.t1 |
| chr7.3 | exon | 60724540 | 60724701 | 60724540 | ID=MS.gene20092.t1.exon3;Parent=MS.gene20092.t1 |
| chr7.3 | CDS | 60724540 | 60724701 | 60724540 | ID=cds.MS.gene20092.t1;Parent=MS.gene20092.t1 |
| chr7.3 | exon | 60723250 | 60723317 | 60723250 | ID=MS.gene20092.t1.exon4;Parent=MS.gene20092.t1 |
| chr7.3 | CDS | 60723250 | 60723317 | 60723250 | ID=cds.MS.gene20092.t1;Parent=MS.gene20092.t1 |
| chr7.3 | exon | 60721109 | 60721181 | 60721109 | ID=MS.gene20092.t1.exon5;Parent=MS.gene20092.t1 |
| chr7.3 | CDS | 60721109 | 60721181 | 60721109 | ID=cds.MS.gene20092.t1;Parent=MS.gene20092.t1 |
| chr7.3 | exon | 60718470 | 60718544 | 60718470 | ID=MS.gene20092.t1.exon6;Parent=MS.gene20092.t1 |
| chr7.3 | CDS | 60718470 | 60718544 | 60718470 | ID=cds.MS.gene20092.t1;Parent=MS.gene20092.t1 |
| chr7.3 | exon | 60718266 | 60718381 | 60718266 | ID=MS.gene20092.t1.exon7;Parent=MS.gene20092.t1 |
| chr7.3 | CDS | 60718266 | 60718381 | 60718266 | ID=cds.MS.gene20092.t1;Parent=MS.gene20092.t1 |
| chr7.3 | exon | 60718087 | 60718153 | 60718087 | ID=MS.gene20092.t1.exon8;Parent=MS.gene20092.t1 |
| chr7.3 | CDS | 60718087 | 60718153 | 60718087 | ID=cds.MS.gene20092.t1;Parent=MS.gene20092.t1 |
| chr7.3 | exon | 60717858 | 60717988 | 60717858 | ID=MS.gene20092.t1.exon9;Parent=MS.gene20092.t1 |
| chr7.3 | CDS | 60717858 | 60717988 | 60717858 | ID=cds.MS.gene20092.t1;Parent=MS.gene20092.t1 |
| chr7.3 | exon | 60717504 | 60717773 | 60717504 | ID=MS.gene20092.t1.exon10;Parent=MS.gene20092.t1 |
| chr7.3 | CDS | 60717504 | 60717773 | 60717504 | ID=cds.MS.gene20092.t1;Parent=MS.gene20092.t1 |
| Gene Sequence |
| Protein sequence |