AlfalfaGEDB | MS.gene20126

M. sativa cultivar XinJiangDaYe / MS.gene20126

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20126.t1	XP_003611140.1	99	483	5	0	1	483	1	483	8.30E-283	982.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20126.t1	Q7XU38	67.6	450	143	3	25	471	65	514	4.9e-183	642.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20126.t1	G7KDG3	99.0	483	5	0	1	483	1	483	6.0e-283	982.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene053097	MS.gene20126	0.806339	8.63E-50	-1.69E-46
MS.gene054277	MS.gene20126	0.802223	6.21E-49	-1.69E-46
MS.gene055629	MS.gene20126	-0.80447	2.13E-49	-1.69E-46
MS.gene056076	MS.gene20126	0.804906	1.73E-49	-1.69E-46
MS.gene056920	MS.gene20126	0.809655	1.70E-50	-1.69E-46
MS.gene058171	MS.gene20126	0.807614	4.64E-50	-1.69E-46
MS.gene058173	MS.gene20126	0.80088	1.17E-48	-1.69E-46
MS.gene058175	MS.gene20126	0.809882	1.52E-50	-1.69E-46
MS.gene058420	MS.gene20126	-0.814008	1.92E-51	-1.69E-46
MS.gene059039	MS.gene20126	0.802082	6.64E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene027936	MS.gene20126	PPI
MS.gene057332	MS.gene20126	PPI
MS.gene20126	MS.gene027931	PPI
MS.gene20126	MS.gene051310	PPI
MS.gene20126	MS.gene047358	PPI
MS.gene20126	MS.gene69236	PPI
MS.gene20126	MS.gene80688	PPI
MS.gene20126	MS.gene23896	PPI
MS.gene20126	MS.gene051305	PPI
MS.gene20126	MS.gene02808	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20126.t1	MTR_5g010750	98.965	483	5	0	1	483	1	483	0.0	1002
MS.gene20126.t1	MTR_5g010750	98.869	442	5	0	1	442	1	442	0.0	912
MS.gene20126.t1	MTR_5g082520	35.714	448	280	4	30	474	27	469	5.16e-101	311
MS.gene20126.t1	MTR_8g077810	35.778	450	271	7	31	467	33	477	7.29e-100	309
MS.gene20126.t1	MTR_5g020020	35.232	474	288	9	6	467	11	477	1.11e-99	308
MS.gene20126.t1	MTR_3g070380	34.889	450	279	6	30	472	28	470	9.88e-96	298
MS.gene20126.t1	MTR_3g007320	33.761	468	294	11	5	468	7	462	4.91e-95	295
MS.gene20126.t1	MTR_6g015910	34.188	468	290	12	6	468	8	462	1.01e-94	295
MS.gene20126.t1	MTR_7g016040	32.196	469	307	7	1	468	3	461	8.30e-92	287
MS.gene20126.t1	MTR_8g076510	34.048	420	262	5	32	443	40	452	1.05e-87	277

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20126.t1	AT1G12740	74.468	470	120	0	1	470	1	470	0.0	754
MS.gene20126.t1	AT1G12740	73.739	476	119	1	1	470	1	476	0.0	749
MS.gene20126.t1	AT1G12740	73.529	476	120	1	1	470	1	476	0.0	748
MS.gene20126.t1	AT1G12740	73.901	364	95	0	1	364	1	364	0.0	569
MS.gene20126.t1	AT1G78490	40.717	474	277	4	3	473	7	479	1.49e-132	392
MS.gene20126.t1	AT5G48000	41.794	457	262	4	16	469	20	475	1.01e-131	390
MS.gene20126.t1	AT5G48000	41.794	457	262	4	16	469	20	475	1.01e-131	390
MS.gene20126.t1	AT5G48000	41.794	457	262	4	16	469	20	475	1.01e-131	390
MS.gene20126.t1	AT5G48000	41.794	457	262	4	16	469	20	475	1.01e-131	390
MS.gene20126.t1	AT5G48000	41.794	457	262	4	16	469	20	475	1.01e-131	390

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Find 126 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGCACCTCCCATCTGGA+TGG	0.527002	5.4:+5029249	None:intergenic
AAACTACCACCAGGTACAAT+GGG	0.497164	5.4:-5031237	MS.gene20126:CDS
AAAGTTCTCCCTTAAATTCT+CGG	0.385746	5.4:+5030392	None:intergenic
AAATCCTTCTGTTGTTTCCT+AGG	0.357079	5.4:+5030042	None:intergenic
AAATGTTTGGTAGCACCACT+CGG	0.596149	5.4:+5029036	None:intergenic
AAATTCTCGGAGGACTCGGT+TGG	0.542724	5.4:+5030405	None:intergenic
AACAATATTCCCTCCTTTGA+TGG	0.311079	5.4:+5028797	None:intergenic
AACATGATGCTCAATTTGTT+TGG	0.363635	5.4:-5030690	MS.gene20126:CDS
AACGCACCTCCCATCTGGAT+GGG	0.588199	5.4:+5029250	None:intergenic
AACTTTGTTGCATTTATACA+AGG	0.506305	5.4:-5030375	MS.gene20126:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGTTTAGACTTTAGACA+AGG	+	chr5.4:5029535-5029554	None:intergenic	30.0%
AAAGTTCTCCCTTAAATTCT+CGG	+	chr5.4:5029636-5029655	None:intergenic	30.0%
AATATCTCTGTGAATGTATC+TGG	+	chr5.4:5029263-5029282	None:intergenic	30.0%
AATTGAGCATCATGTTCTTA+AGG	+	chr5.4:5029331-5029350	None:intergenic	30.0%
ACGCATTCTGAATTAAATTC+AGG	+	chr5.4:5031173-5031192	None:intergenic	30.0%
AGCTTATAACAAATGTTTGC+AGG	-	chr5.4:5029706-5029725	MS.gene20126:CDS	30.0%
ATATTTGGGCAACAAAATGT+AGG	-	chr5.4:5029278-5029297	MS.gene20126:CDS	30.0%
ATTGTCAGAGAGTAATTTGA+TGG	+	chr5.4:5030134-5030153	None:intergenic	30.0%
GAAAAGATGGAAAGAAAATG+AGG	+	chr5.4:5030814-5030833	None:intergenic	30.0%
GAAGAAGGTTAAAATAGTAG+AGG	+	chr5.4:5029508-5029527	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	5028701	5031346	5028701	ID=MS.gene20126
chr5.4	mRNA	5028701	5031346	5028701	ID=MS.gene20126.t1;Parent=MS.gene20126
chr5.4	exon	5031150	5031346	5031150	ID=MS.gene20126.t1.exon1;Parent=MS.gene20126.t1
chr5.4	CDS	5031150	5031346	5031150	ID=cds.MS.gene20126.t1;Parent=MS.gene20126.t1
chr5.4	exon	5030581	5030902	5030581	ID=MS.gene20126.t1.exon2;Parent=MS.gene20126.t1
chr5.4	CDS	5030581	5030902	5030581	ID=cds.MS.gene20126.t1;Parent=MS.gene20126.t1
chr5.4	exon	5030320	5030469	5030320	ID=MS.gene20126.t1.exon3;Parent=MS.gene20126.t1
chr5.4	CDS	5030320	5030469	5030320	ID=cds.MS.gene20126.t1;Parent=MS.gene20126.t1
chr5.4	exon	5029870	5030121	5029870	ID=MS.gene20126.t1.exon4;Parent=MS.gene20126.t1
chr5.4	CDS	5029870	5030121	5029870	ID=cds.MS.gene20126.t1;Parent=MS.gene20126.t1
chr5.4	exon	5029678	5029767	5029678	ID=MS.gene20126.t1.exon5;Parent=MS.gene20126.t1
chr5.4	CDS	5029678	5029767	5029678	ID=cds.MS.gene20126.t1;Parent=MS.gene20126.t1
chr5.4	exon	5029509	5029587	5029509	ID=MS.gene20126.t1.exon6;Parent=MS.gene20126.t1
chr5.4	CDS	5029509	5029587	5029509	ID=cds.MS.gene20126.t1;Parent=MS.gene20126.t1
chr5.4	exon	5029257	5029363	5029257	ID=MS.gene20126.t1.exon7;Parent=MS.gene20126.t1
chr5.4	CDS	5029257	5029363	5029257	ID=cds.MS.gene20126.t1;Parent=MS.gene20126.t1
chr5.4	exon	5028940	5029067	5028940	ID=MS.gene20126.t1.exon8;Parent=MS.gene20126.t1
chr5.4	CDS	5028940	5029067	5028940	ID=cds.MS.gene20126.t1;Parent=MS.gene20126.t1
chr5.4	exon	5028701	5028827	5028701	ID=MS.gene20126.t1.exon9;Parent=MS.gene20126.t1
chr5.4	CDS	5028701	5028827	5028701	ID=cds.MS.gene20126.t1;Parent=MS.gene20126.t1

Gene Sequence

>MS.gene20126

ATGTGGGTTTTGTGTCTAGGAGCATTGGTTACTATGTGCATTATTACACGTTGGGTTTATAGATGGAGAAATCCTAGTTGCAATGGTAAACTACCACCAGGTACAATGGGATTACCCCTTTTAGGTGAGAGCCTTCAGTTTTTTTCTCCCAACACTTCTTGTGATATTCCTCCATTCATCAAGAAGAGAATGAAAAGGTATATATAAAAGTATATTACAAGTTATCAATTCAATTAAGCTTTCATTTTTTGTTAGAGAGTAATTAATAATATCACAGTTTGTTCGGGATAACTTGAGTTCAAATTATGGCTGAAGCAATCCTTGGCCAGACTTTACTTACCTTTCGGCCGAACTTTGGATTACCAGGGCCTCATTCTCCTGGAACCGGTGGGCTAAGACAAAAACAAAAGGAATAATATGGTTTTTTTTGTTGTCTCTTTTCAGATATGGACCAATCTTCAAGACAAACTTGGTTGGAAGACCAGTTGTAGTGTCCACAGACCCTGATCTTAACTACTTCATATTCCAACAGGAAGGGAAAATATTCCAGAGTTGGTATCCAGATACATTCACAGAGATATTTGGGCAACAAAATGTAGGTTCCTTACATGGTTTTATGTATAAGTACCTTAAGAACATGATGCTCAATTTGTTTGGTCCTGAAAGTCTTAAAAAGATGATCTCAGAGGTTGAACAAGCAGCCTGCAGAACATTACAACAGGCGTCGTGTCAGGACAGTGTCGAGCTGAAGGAAGCAACAGAAACGGTAAAATAATTACACTTTACACTAACTATTCTTTCATTCCTCTACTATTTTAACCTTCTTCCATTCCTTGTCTAAAGTCTAAACCTTTCTTTCCTATATATAATCATTCAGATGATATTTGATTTGACTGCAAAAAAACTCATCAGTTATGATCCAACCGAGTCCTCCGAGAATTTAAGGGAGAACTTTGTTGCATTTATACAAGGACTCATCTCATTCCCTCTCAACATTCCAGGAACAGCTTATAACAAATGTTTGCAGGTAAGCATTTTATTAATAAGGGTAATTTAGTAAACGAAACTCGTTTAATTATAAAAATTAGTACACTGGTTGGTTTTCTCAAGAAGTGTGGATAACTTTAAACGACACTTAATTTGAGACAGAGAAAGTATCAGACAAAGTGTAGTATTTTTATTTTGATTGAGAAAACAGCAAAATTAACTTGTTTTGGCTTCTCAGGGTAGAAAAAAAGCAATGAAGATGCTTAAGAGCATGCTGCAGGAAAGAAGGGAAATGCCTAGGAAACAACAGAAGGATTTCTTTGACTATGTTATTGAAGAACTTAGAAAAGAGGGAACACTCTTAACAGAAGCAATAGCTCTGGACCTCATGTTTGTGCTTCTCTTTGCAAGCTTCGAAACCACTTCTCAGGCCCTTACTTATGCCATCAAATTACTCTCTGACAATCCCTTGGTGTTCAAGCAATTACAAGTACGTTACAAATATATTATTATATGGCCTTAGAATCTTTTGAACTATTTTTTTATGGCTTTAGGATGTCAATTTTGACTTCCTCGGTACCTTGTCTTTTAGGAAGAACATGAAGCCATCCTTGAACGACGTGAGAATCCTAACTCTGGAGTCACATGGCAAGAATATAAATCAATGACATTTACATTTCAGGTTAGTTAAAAAATTTCTTCATTTTTAATGTGGGACATATTGTGTGTTAATTTATCTTATTTGAAATTCAATGAATGATGATTTGCACAGCTCATAACCGAAACTGCGAGACTTGCAAATATAGTTCCAGGAATCTTCCGGAAGGCACTAAGGGAAATTAATTTTAAGGGTATGTGATTGCTAATTTAATAATACAACATTTTCAAGTTTCAATGTTCAAGTGCATTGGTAACTTGATGTTTAAGTAATAGTGGAAAAGCACACTATATTTGACAATGTTACCTCATTTTGTCTACAATAATGAACACGTGCAGGATATACCATACCAGCAGGATGGGCAATCATGGTGTGTCCCCCAGCTGTACATTTGAACCCTGCGAAATATCAGGATCCTCTTGTCTTCAACCCATCCAGATGGGAGGTGCGTTTAGCATTTTTTTTCCTCATTTTCTTTCCATCTTTTCAAAGCTAGTTGCTTCAAAGAATCTCAAAAAGTAATGCAATTAGCTTCTTTAGCAAGTACTATAGATAATCATTCAAGTAACTTAGATTCTAGTCTATCATGTCCCTTCTTTTACAATTTTGTGATCCAAAAAGAAATGGTCTACAGGGAATGGAACCGAGTGGTGCTACCAAACATTTCCTGGCTTTTGGTGGAGGCATGAGATTTTGTGTTGGGACAGAATTTGCCAAGGTTCAGATGGCAGTTTTTCTTCATTGCTTGGTAACAAAGTATAGGTAATAAGCAATGTAATGCATGGAAAGTGACTTTAAACTGAAACAATGTACCTTCTTTAACGCCTGAATTTAATTCAGAATGCGTAGTCTCTTTAACGTTTGAATATTTCAGGTGGCGACCCATCAAAGGAGGGAATATTGTTCGAACTCCTGGTTTACAATTTCCAAATGGCTTTCATGTCCAGATCACAGAGAAAGATCAAAAGAAGCACGAATCAGAATGTACAACTACATATTAG

Protein sequence

>MS.gene20126.t1

MWVLCLGALVTMCIITRWVYRWRNPSCNGKLPPGTMGLPLLGESLQFFSPNTSCDIPPFIKKRMKRYGPIFKTNLVGRPVVVSTDPDLNYFIFQQEGKIFQSWYPDTFTEIFGQQNVGSLHGFMYKYLKNMMLNLFGPESLKKMISEVEQAACRTLQQASCQDSVELKEATETMIFDLTAKKLISYDPTESSENLRENFVAFIQGLISFPLNIPGTAYNKCLQGRKKAMKMLKSMLQERREMPRKQQKDFFDYVIEELRKEGTLLTEAIALDLMFVLLFASFETTSQALTYAIKLLSDNPLVFKQLQEEHEAILERRENPNSGVTWQEYKSMTFTFQLITETARLANIVPGIFRKALREINFKGYTIPAGWAIMVCPPAVHLNPAKYQDPLVFNPSRWEGMEPSGATKHFLAFGGGMRFCVGTEFAKVQMAVFLHCLVTKYRWRPIKGGNIVRTPGLQFPNGFHVQITEKDQKKHESECTTTY