Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058420.t1 | PNX91393.1 | 60.4 | 371 | 136 | 6 | 1 | 367 | 1 | 364 | 6.50E-94 | 354.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058420.t1 | Q9SLL2 | 31.8 | 399 | 185 | 9 | 4 | 367 | 13 | 359 | 1.3e-18 | 95.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058420.t1 | A0A2K3MKP0 | 60.4 | 371 | 136 | 6 | 1 | 367 | 1 | 364 | 4.7e-94 | 354.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051560 | MS.gene058420 | 0.835223 | 1.90E-56 | -1.69E-46 |
| MS.gene052164 | MS.gene058420 | 0.812345 | 4.44E-51 | -1.69E-46 |
| MS.gene052413 | MS.gene058420 | 0.811345 | 7.34E-51 | -1.69E-46 |
| MS.gene053626 | MS.gene058420 | 0.802169 | 6.37E-49 | -1.69E-46 |
| MS.gene055629 | MS.gene058420 | 0.821441 | 4.03E-53 | -1.69E-46 |
| MS.gene056040 | MS.gene058420 | 0.804754 | 1.86E-49 | -1.69E-46 |
| MS.gene056166 | MS.gene058420 | 0.810002 | 1.43E-50 | -1.69E-46 |
| MS.gene057086 | MS.gene058420 | 0.818565 | 1.83E-52 | -1.69E-46 |
| MS.gene057321 | MS.gene058420 | -0.814047 | 1.88E-51 | -1.69E-46 |
| MS.gene058420 | MS.gene059367 | 0.825128 | 5.55E-54 | -1.69E-46 |
| MS.gene058420 | MS.gene059368 | 0.804656 | 1.95E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene059517 | 0.836533 | 8.85E-57 | -1.69E-46 |
| MS.gene058420 | MS.gene060778 | 0.803678 | 3.11E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene061862 | 0.803788 | 2.95E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene064148 | 0.811868 | 5.64E-51 | -1.69E-46 |
| MS.gene058420 | MS.gene064283 | 0.801589 | 8.38E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene065540 | 0.834968 | 2.20E-56 | -1.69E-46 |
| MS.gene058420 | MS.gene067331 | -0.801395 | 9.19E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene067713 | 0.802069 | 6.68E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene06923 | 0.803214 | 3.88E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene071969 | -0.805814 | 1.11E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene072847 | 0.8053 | 1.43E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene073118 | 0.846296 | 2.37E-59 | -1.69E-46 |
| MS.gene058420 | MS.gene07329 | 0.843769 | 1.14E-58 | -1.69E-46 |
| MS.gene058420 | MS.gene073883 | 0.804543 | 2.05E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene08253 | 0.824624 | 7.30E-54 | -1.69E-46 |
| MS.gene058420 | MS.gene08254 | 0.85135 | 9.40E-61 | -1.69E-46 |
| MS.gene058420 | MS.gene09022 | -0.812546 | 4.02E-51 | -1.69E-46 |
| MS.gene058420 | MS.gene09053 | 0.855351 | 6.69E-62 | -1.69E-46 |
| MS.gene058420 | MS.gene09193 | 0.829889 | 4.00E-55 | -1.69E-46 |
| MS.gene058420 | MS.gene20126 | -0.814008 | 1.92E-51 | -1.69E-46 |
| MS.gene058420 | MS.gene20127 | -0.810516 | 1.11E-50 | -1.69E-46 |
| MS.gene058420 | MS.gene20594 | 0.844529 | 7.15E-59 | -1.69E-46 |
| MS.gene058420 | MS.gene20878 | 0.831077 | 2.05E-55 | -1.69E-46 |
| MS.gene058420 | MS.gene22618 | -0.804887 | 1.74E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene23217 | 0.874797 | 5.10E-68 | -1.69E-46 |
| MS.gene058420 | MS.gene23219 | 0.874127 | 8.61E-68 | -1.69E-46 |
| MS.gene058420 | MS.gene23254 | 0.872902 | 2.23E-67 | -1.69E-46 |
| MS.gene058420 | MS.gene24272 | -0.801334 | 9.45E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene26968 | -0.836435 | 9.38E-57 | -1.69E-46 |
| MS.gene058420 | MS.gene27308 | -0.830533 | 2.78E-55 | -1.69E-46 |
| MS.gene058420 | MS.gene27583 | 0.826504 | 2.62E-54 | -1.69E-46 |
| MS.gene058420 | MS.gene30150 | 0.80638 | 8.46E-50 | -1.69E-46 |
| MS.gene058420 | MS.gene30743 | 0.80233 | 5.90E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene31106 | 0.805849 | 1.09E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene32677 | 0.837069 | 6.46E-57 | -1.69E-46 |
| MS.gene058420 | MS.gene33017 | 0.801119 | 1.05E-48 | -1.69E-46 |
| MS.gene058420 | MS.gene33043 | 0.865101 | 7.54E-65 | -1.69E-46 |
| MS.gene058420 | MS.gene33048 | 0.873406 | 1.51E-67 | -1.69E-46 |
| MS.gene058420 | MS.gene33174 | -0.808357 | 3.22E-50 | -1.69E-46 |
| MS.gene058420 | MS.gene34171 | 0.824847 | 6.47E-54 | -1.69E-46 |
| MS.gene058420 | MS.gene34554 | 0.827635 | 1.40E-54 | -1.69E-46 |
| MS.gene058420 | MS.gene35338 | 0.826855 | 2.16E-54 | -1.69E-46 |
| MS.gene058420 | MS.gene38097 | -0.801112 | 1.05E-48 | -1.69E-46 |
| MS.gene058420 | MS.gene38173 | -0.810836 | 9.46E-51 | -1.69E-46 |
| MS.gene058420 | MS.gene38174 | -0.806722 | 7.17E-50 | -1.69E-46 |
| MS.gene058420 | MS.gene38309 | 0.812941 | 3.29E-51 | -1.69E-46 |
| MS.gene058420 | MS.gene38572 | 0.827713 | 1.34E-54 | -1.69E-46 |
| MS.gene058420 | MS.gene38684 | -0.809673 | 1.68E-50 | -1.69E-46 |
| MS.gene058420 | MS.gene40101 | 0.808972 | 2.38E-50 | -1.69E-46 |
| MS.gene058420 | MS.gene42301 | 0.804525 | 2.07E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene43618 | 0.809031 | 2.31E-50 | -1.69E-46 |
| MS.gene058420 | MS.gene44305 | 0.807749 | 4.34E-50 | -1.69E-46 |
| MS.gene058420 | MS.gene44722 | -0.802182 | 6.33E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene45854 | -0.805231 | 1.47E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene47377 | 0.846882 | 1.64E-59 | -1.69E-46 |
| MS.gene058420 | MS.gene48249 | -0.837059 | 6.50E-57 | -1.69E-46 |
| MS.gene058420 | MS.gene48646 | 0.809634 | 1.72E-50 | -1.69E-46 |
| MS.gene058420 | MS.gene48649 | 0.800684 | 1.28E-48 | -1.69E-46 |
| MS.gene058420 | MS.gene48921 | -0.845298 | 4.43E-59 | -1.69E-46 |
| MS.gene058420 | MS.gene50091 | 0.810728 | 9.98E-51 | -1.69E-46 |
| MS.gene058420 | MS.gene52444 | 0.852288 | 5.09E-61 | -1.69E-46 |
| MS.gene058420 | MS.gene54718 | 0.840952 | 6.38E-58 | -1.69E-46 |
| MS.gene058420 | MS.gene56083 | 0.854961 | 8.68E-62 | -1.69E-46 |
| MS.gene058420 | MS.gene57140 | 0.821071 | 4.91E-53 | -1.69E-46 |
| MS.gene058420 | MS.gene59576 | 0.810782 | 9.71E-51 | -1.69E-46 |
| MS.gene058420 | MS.gene61653 | 0.807393 | 5.17E-50 | -1.69E-46 |
| MS.gene058420 | MS.gene62619 | 0.812421 | 4.28E-51 | -1.69E-46 |
| MS.gene058420 | MS.gene63749 | -0.826056 | 3.34E-54 | -1.69E-46 |
| MS.gene058420 | MS.gene63751 | -0.83222 | 1.07E-55 | -1.69E-46 |
| MS.gene058420 | MS.gene63788 | 0.831069 | 2.06E-55 | -1.69E-46 |
| MS.gene058420 | MS.gene66210 | 0.862503 | 4.84E-64 | -1.69E-46 |
| MS.gene058420 | MS.gene66653 | 0.802166 | 6.38E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene68529 | 0.815981 | 6.99E-52 | -1.69E-46 |
| MS.gene058420 | MS.gene68625 | 0.816171 | 6.35E-52 | -1.69E-46 |
| MS.gene058420 | MS.gene68980 | 0.815352 | 9.66E-52 | -1.69E-46 |
| MS.gene058420 | MS.gene69130 | 0.804847 | 1.78E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene69132 | 0.8237 | 1.20E-53 | -1.69E-46 |
| MS.gene058420 | MS.gene70420 | -0.80743 | 5.07E-50 | -1.69E-46 |
| MS.gene058420 | MS.gene72257 | 0.834309 | 3.23E-56 | -1.69E-46 |
| MS.gene058420 | MS.gene73493 | 0.823757 | 1.17E-53 | -1.69E-46 |
| MS.gene058420 | MS.gene80210 | 0.849517 | 3.07E-60 | -1.69E-46 |
| MS.gene058420 | MS.gene82917 | 0.809048 | 2.29E-50 | -1.69E-46 |
| MS.gene058420 | MS.gene83251 | 0.804237 | 2.38E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene86018 | 0.810499 | 1.12E-50 | -1.69E-46 |
| MS.gene058420 | MS.gene86071 | 0.835687 | 1.45E-56 | -1.69E-46 |
| MS.gene058420 | MS.gene88640 | 0.802366 | 5.80E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene89058 | 0.812609 | 3.89E-51 | -1.69E-46 |
| MS.gene058420 | MS.gene90269 | 0.826898 | 2.11E-54 | -1.69E-46 |
| MS.gene058420 | MS.gene90685 | -0.837253 | 5.80E-57 | -1.69E-46 |
| MS.gene058420 | MS.gene91973 | -0.832511 | 9.07E-56 | -1.69E-46 |
| MS.gene058420 | MS.gene91976 | -0.812545 | 4.02E-51 | -1.69E-46 |
| MS.gene058420 | MS.gene91977 | -0.824034 | 1.00E-53 | -1.69E-46 |
| MS.gene058420 | MS.gene93030 | 0.801296 | 9.63E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene93165 | 0.801578 | 8.43E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene93265 | 0.806795 | 6.92E-50 | -1.69E-46 |
| MS.gene058420 | MS.gene94628 | 0.838043 | 3.63E-57 | -1.69E-46 |
| MS.gene058420 | MS.gene95289 | 0.843786 | 1.13E-58 | -1.69E-46 |
| MS.gene058420 | MS.gene96194 | -0.810183 | 1.31E-50 | -1.69E-46 |
| MS.gene058420 | MS.gene98420 | 0.817552 | 3.11E-52 | -1.69E-46 |
| MS.gene058420 | MS.gene99141 | -0.800904 | 1.16E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058420.t1 | MTR_1g015275 | 86.721 | 369 | 44 | 3 | 1 | 366 | 1 | 367 | 1.35e-168 | 475 |
| MS.gene058420.t1 | MTR_3g104880 | 44.146 | 410 | 140 | 14 | 1 | 366 | 1 | 365 | 4.32e-53 | 180 |
| MS.gene058420.t1 | MTR_8g019660 | 40.573 | 419 | 172 | 13 | 1 | 367 | 1 | 394 | 7.41e-34 | 129 |
| MS.gene058420.t1 | MTR_4g125620 | 34.160 | 363 | 181 | 15 | 17 | 366 | 15 | 332 | 6.08e-22 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058420.t1 | AT3G13980 | 36.788 | 386 | 154 | 12 | 16 | 367 | 16 | 345 | 1.54e-37 | 139 |
| MS.gene058420.t1 | AT1G54200 | 37.221 | 403 | 158 | 14 | 4 | 367 | 13 | 359 | 3.45e-34 | 130 |
| MS.gene058420.t1 | AT5G12050 | 32.500 | 400 | 169 | 14 | 16 | 364 | 7 | 356 | 1.06e-17 | 84.0 |
| MS.gene058420.t1 | AT3G42800 | 32.308 | 195 | 109 | 5 | 186 | 364 | 140 | 327 | 1.79e-13 | 71.2 |
Find 64 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCTTGTTCTAACCGGTTT+TGG | 0.272024 | 1.4:+6801433 | None:intergenic |
| ATCTGCTTCTTCGTCTTTGT+TGG | 0.273644 | 1.4:+6801151 | None:intergenic |
| CAAACAAAGCACAGAAAATC+AGG | 0.283328 | 1.4:-6801335 | MS.gene058420:CDS |
| CGTCGATGGAACGGTAAATT+TGG | 0.311193 | 1.4:+6801767 | None:intergenic |
| CAGTTCCACTTCAATTTCTT+CGG | 0.312323 | 1.4:-6801545 | MS.gene058420:CDS |
| CAAGCGTGTCGGCATCATTT+AGG | 0.345034 | 1.4:-6801417 | MS.gene058420:CDS |
| TAGGCTTGAAAAGGAGAAAC+AGG | 0.345846 | 1.4:-6801398 | MS.gene058420:CDS |
| GCTTCACTTTCTTCAAGTTA+TGG | 0.350552 | 1.4:+6801263 | None:intergenic |
| TCCGACACAGATTCATTATA+CGG | 0.352790 | 1.4:-6801496 | MS.gene058420:CDS |
| TTGGATCATTTGAGTGTGTT+TGG | 0.380923 | 1.4:-6800815 | MS.gene058420:CDS |
| GGAAGAGGGTAGGGCTAAGG+TGG | 0.392720 | 1.4:-6800993 | MS.gene058420:CDS |
| GCCGACACGCTTGTTCTAAC+CGG | 0.412919 | 1.4:+6801427 | None:intergenic |
| AGAGGGTAGGGCTAAGGTGG+AGG | 0.421619 | 1.4:-6800990 | MS.gene058420:CDS |
| GTTGGTTTGTTTAAAATCGT+TGG | 0.424352 | 1.4:+6801691 | None:intergenic |
| TTGTGGAGTGGAAGAGGGTA+GGG | 0.431294 | 1.4:-6801002 | MS.gene058420:CDS |
| AGTGGAAGAGGGTAGGGCTA+AGG | 0.442934 | 1.4:-6800996 | MS.gene058420:CDS |
| CGTTCCACCTAGGCCAAAAC+CGG | 0.444322 | 1.4:-6801446 | MS.gene058420:CDS |
| AAGGGTTTATGAACCTCTCC+TGG | 0.449214 | 1.4:+6801812 | None:intergenic |
| TGTGAGGAGCTTCCTGTGTA+TGG | 0.451538 | 1.4:-6800779 | MS.gene058420:CDS |
| ATTTCTTCGGATTCTAGCTC+CGG | 0.469115 | 1.4:-6801532 | MS.gene058420:CDS |
| AACGGTAAATTTGGTCTAAG+AGG | 0.473989 | 1.4:+6801776 | None:intergenic |
| GGCATCATTTAGGCTTGAAA+AGG | 0.486316 | 1.4:-6801407 | MS.gene058420:CDS |
| AAGAGGGTGGAAGAGAATGA+AGG | 0.489820 | 1.4:+6801793 | None:intergenic |
| TTTGTGGAGTGGAAGAGGGT+AGG | 0.496413 | 1.4:-6801003 | MS.gene058420:CDS |
| TGAGTGTGTTTGGAGATAGT+AGG | 0.500314 | 1.4:-6800805 | MS.gene058420:CDS |
| TTTCTCCTTCGTCGATGGAA+CGG | 0.507353 | 1.4:+6801758 | None:intergenic |
| AGAAAATCAGGGCGAGGAAG+CGG | 0.507438 | 1.4:-6801323 | MS.gene058420:CDS |
| TCTTCTTCTTGTTATAACAT+TGG | 0.508602 | 1.4:+6800939 | None:intergenic |
| ATCATTTCTACCACAAAATG+AGG | 0.508732 | 1.4:+6801042 | None:intergenic |
| CTTGGTCGTGATCACGGAGG+TGG | 0.530166 | 1.4:+6801581 | None:intergenic |
| GTGAAGCAACCGATTTCGCC+AGG | 0.534045 | 1.4:-6801247 | MS.gene058420:CDS |
| TGGTAGAAATGATTACAAAA+CGG | 0.535489 | 1.4:-6801032 | MS.gene058420:CDS |
| CGTCGTGCTTCGTTCCACCT+AGG | 0.539775 | 1.4:-6801456 | MS.gene058420:CDS |
| CGAAGAAGCAGATGAACACA+TGG | 0.541264 | 1.4:-6801141 | MS.gene058420:CDS |
| AACTGAAGAACAGAGCATCT+TGG | 0.545134 | 1.4:+6801563 | None:intergenic |
| TGGAGATAGTAGGTATTGTG+AGG | 0.545793 | 1.4:-6800795 | MS.gene058420:CDS |
| GAGCATCTTGGTCGTGATCA+CGG | 0.556578 | 1.4:+6801575 | None:intergenic |
| AGAGGGTGGAAGAGAATGAA+GGG | 0.557335 | 1.4:+6801794 | None:intergenic |
| TAATGAATCTGTGTCGGAGG+AGG | 0.558404 | 1.4:+6801501 | None:intergenic |
| AGAATCCGAAGAAATTGAAG+TGG | 0.585201 | 1.4:+6801540 | None:intergenic |
| AAGCACAGAAAATCAGGGCG+AGG | 0.586042 | 1.4:-6801329 | MS.gene058420:CDS |
| TCTTCGGATTCTAGCTCCGG+TGG | 0.592579 | 1.4:-6801529 | MS.gene058420:CDS |
| TCCGTATAATGAATCTGTGT+CGG | 0.592790 | 1.4:+6801495 | None:intergenic |
| ACGGTAAATTTGGTCTAAGA+GGG | 0.594369 | 1.4:+6801777 | None:intergenic |
| GAACACATGGGAGACTCATG+AGG | 0.596864 | 1.4:-6801128 | MS.gene058420:CDS |
| GTCGGAGGAGGAGAATCCAC+CGG | 0.606459 | 1.4:+6801513 | None:intergenic |
| AAACAAAGCACAGAAAATCA+GGG | 0.608992 | 1.4:-6801334 | MS.gene058420:CDS |
| AATAAAGAACAAATCAAGAG+CGG | 0.611789 | 1.4:-6801296 | MS.gene058420:CDS |
| GTAAATTTGGTCTAAGAGGG+TGG | 0.617354 | 1.4:+6801780 | None:intergenic |
| AGGCTTGAAAAGGAGAAACA+GGG | 0.627580 | 1.4:-6801397 | MS.gene058420:CDS |
| GGATGAAGATGATGATGATG+TGG | 0.631674 | 1.4:-6800867 | MS.gene058420:CDS |
| ATTTACCGTTCCATCGACGA+AGG | 0.641766 | 1.4:-6801763 | MS.gene058420:CDS |
| TGAGAAGAGATCAACAAACC+AGG | 0.646589 | 1.4:-6801830 | MS.gene058420:CDS |
| CGAAGAAGCAGATGAACACG+TGG | 0.648153 | 1.4:+6801093 | None:intergenic |
| ACCGGTTAGAACAAGCGTGT+CGG | 0.655186 | 1.4:-6801428 | MS.gene058420:CDS |
| GGCTTGAAAAGGAGAAACAG+GGG | 0.655509 | 1.4:-6801396 | MS.gene058420:CDS |
| AGAGATCAACAAACCAGGAG+AGG | 0.655509 | 1.4:-6801825 | MS.gene058420:CDS |
| ATTTCTACCACAAAATGAGG+CGG | 0.655870 | 1.4:+6801045 | None:intergenic |
| AAGCAACCGATTTCGCCAGG+TGG | 0.662604 | 1.4:-6801244 | MS.gene058420:CDS |
| GTATAATGAATCTGTGTCGG+AGG | 0.665395 | 1.4:+6801498 | None:intergenic |
| AACACATGGGAGACTCATGA+GGG | 0.677376 | 1.4:-6801127 | MS.gene058420:CDS |
| ACACGAGTAGTTCCATACAC+AGG | 0.691654 | 1.4:+6800767 | None:intergenic |
| GAAGAAGCAGATGAACACAT+GGG | 0.731435 | 1.4:-6801140 | MS.gene058420:CDS |
| CATCTTGGTCGTGATCACGG+AGG | 0.775277 | 1.4:+6801578 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATGATTTAGTTTTATTAA+AGG | - | chr1.4:6801683-6801702 | MS.gene058420:CDS | 15.0% |
| !! | TATTAATCAAAAAGAAGAAG+AGG | - | chr1.4:6801713-6801732 | MS.gene058420:CDS | 20.0% |
| ! | AATAAAGAACAAATCAAGAG+CGG | - | chr1.4:6801305-6801324 | MS.gene058420:CDS | 25.0% |
| ! | TGGTAGAAATGATTACAAAA+CGG | - | chr1.4:6801569-6801588 | MS.gene058420:CDS | 25.0% |
| !! | GTTATTGTTATGTTTTCTGT+CGG | + | chr1.4:6800938-6800957 | None:intergenic | 25.0% |
| !! | TCTTCTTCTTGTTATAACAT+TGG | + | chr1.4:6801665-6801684 | None:intergenic | 25.0% |
| !!! | GTAAAATTTTGTTGATTCAG+TGG | + | chr1.4:6800878-6800897 | None:intergenic | 25.0% |
| AAACAAAGCACAGAAAATCA+GGG | - | chr1.4:6801267-6801286 | MS.gene058420:CDS | 30.0% | |
| ATCATTTCTACCACAAAATG+AGG | + | chr1.4:6801562-6801581 | None:intergenic | 30.0% | |
| !! | GTTGGTTTGTTTAAAATCGT+TGG | + | chr1.4:6800913-6800932 | None:intergenic | 30.0% |
| !!! | AAGTTCTGATCTTTTTGAGT+TGG | - | chr1.4:6801767-6801786 | MS.gene058420:CDS | 30.0% |
| !!! | GAAACAGTTTTTTCGGTTTT+TGG | + | chr1.4:6800970-6800989 | None:intergenic | 30.0% |
| AACGGTAAATTTGGTCTAAG+AGG | + | chr1.4:6800828-6800847 | None:intergenic | 35.0% | |
| ACGGTAAATTTGGTCTAAGA+GGG | + | chr1.4:6800827-6800846 | None:intergenic | 35.0% | |
| AGAATCCGAAGAAATTGAAG+TGG | + | chr1.4:6801064-6801083 | None:intergenic | 35.0% | |
| ATTTCTACCACAAAATGAGG+CGG | + | chr1.4:6801559-6801578 | None:intergenic | 35.0% | |
| CAAACAAAGCACAGAAAATC+AGG | - | chr1.4:6801266-6801285 | MS.gene058420:CDS | 35.0% | |
| CAGTTCCACTTCAATTTCTT+CGG | - | chr1.4:6801056-6801075 | MS.gene058420:CDS | 35.0% | |
| TCCGACACAGATTCATTATA+CGG | - | chr1.4:6801105-6801124 | MS.gene058420:CDS | 35.0% | |
| TCCGTATAATGAATCTGTGT+CGG | + | chr1.4:6801109-6801128 | None:intergenic | 35.0% | |
| TTGGATCATTTGAGTGTGTT+TGG | - | chr1.4:6801786-6801805 | MS.gene058420:CDS | 35.0% | |
| ! | GCTTCACTTTCTTCAAGTTA+TGG | + | chr1.4:6801341-6801360 | None:intergenic | 35.0% |
| ! | TACAAAACGGTACGTTTTTG+TGG | - | chr1.4:6801582-6801601 | MS.gene058420:CDS | 35.0% |
| !! | TTATGTTTTCTGTCGGTTGT+TGG | + | chr1.4:6800931-6800950 | None:intergenic | 35.0% |
| AGGCTTGAAAAGGAGAAACA+GGG | - | chr1.4:6801204-6801223 | MS.gene058420:CDS | 40.0% | |
| ATCTGCTTCTTCGTCTTTGT+TGG | + | chr1.4:6801453-6801472 | None:intergenic | 40.0% | |
| GAAGAAGCAGATGAACACAT+GGG | - | chr1.4:6801461-6801480 | MS.gene058420:CDS | 40.0% | |
| GGCATCATTTAGGCTTGAAA+AGG | - | chr1.4:6801194-6801213 | MS.gene058420:CDS | 40.0% | |
| GTAAATTTGGTCTAAGAGGG+TGG | + | chr1.4:6800824-6800843 | None:intergenic | 40.0% | |
| GTATAATGAATCTGTGTCGG+AGG | + | chr1.4:6801106-6801125 | None:intergenic | 40.0% | |
| TAGGCTTGAAAAGGAGAAAC+AGG | - | chr1.4:6801203-6801222 | MS.gene058420:CDS | 40.0% | |
| TGAGAAGAGATCAACAAACC+AGG | - | chr1.4:6800771-6800790 | MS.gene058420:CDS | 40.0% | |
| TGAGTGTGTTTGGAGATAGT+AGG | - | chr1.4:6801796-6801815 | MS.gene058420:CDS | 40.0% | |
| ! | AAACTAGTGAGTTTTCCACC+TGG | + | chr1.4:6801375-6801394 | None:intergenic | 40.0% |
| ! | AACTGAAGAACAGAGCATCT+TGG | + | chr1.4:6801041-6801060 | None:intergenic | 40.0% |
| ! | GAGGTGGAATTTTCTGTTGT+CGG | + | chr1.4:6801007-6801026 | None:intergenic | 40.0% |
| ! | GGATGAAGATGATGATGATG+TGG | - | chr1.4:6801734-6801753 | MS.gene058420:CDS | 40.0% |
| ! | TGGAGATAGTAGGTATTGTG+AGG | - | chr1.4:6801806-6801825 | MS.gene058420:CDS | 40.0% |
| !! | ATTTCTTCGGATTCTAGCTC+CGG | - | chr1.4:6801069-6801088 | MS.gene058420:CDS | 40.0% |
| !! | TTTTGTTTCTCCTTCGTCGA+TGG | + | chr1.4:6800851-6800870 | None:intergenic | 40.0% |
| !!! | CGCGACAGAAACAGTTTTTT+CGG | + | chr1.4:6800977-6800996 | None:intergenic | 40.0% |
| AACACATGGGAGACTCATGA+GGG | - | chr1.4:6801474-6801493 | MS.gene058420:CDS | 45.0% | |
| AAGAGGGTGGAAGAGAATGA+AGG | + | chr1.4:6800811-6800830 | None:intergenic | 45.0% | |
| AAGGGTTTATGAACCTCTCC+TGG | + | chr1.4:6800792-6800811 | None:intergenic | 45.0% | |
| ACACGAGTAGTTCCATACAC+AGG | + | chr1.4:6801837-6801856 | None:intergenic | 45.0% | |
| AGAGATCAACAAACCAGGAG+AGG | - | chr1.4:6800776-6800795 | MS.gene058420:CDS | 45.0% | |
| AGAGGGTGGAAGAGAATGAA+GGG | + | chr1.4:6800810-6800829 | None:intergenic | 45.0% | |
| ATTTACCGTTCCATCGACGA+AGG | - | chr1.4:6800838-6800857 | MS.gene058420:CDS | 45.0% | |
| CGAAGAAGCAGATGAACACA+TGG | - | chr1.4:6801460-6801479 | MS.gene058420:CDS | 45.0% | |
| CGTCGATGGAACGGTAAATT+TGG | + | chr1.4:6800837-6800856 | None:intergenic | 45.0% | |
| GGCTTGAAAAGGAGAAACAG+GGG | - | chr1.4:6801205-6801224 | MS.gene058420:CDS | 45.0% | |
| TAATGAATCTGTGTCGGAGG+AGG | + | chr1.4:6801103-6801122 | None:intergenic | 45.0% | |
| TTTCTCCTTCGTCGATGGAA+CGG | + | chr1.4:6800846-6800865 | None:intergenic | 45.0% | |
| ! | AACGGTACGTTTTTGTGGAG+TGG | - | chr1.4:6801587-6801606 | MS.gene058420:CDS | 45.0% |
| ! | ACGTTTTTGTGGAGTGGAAG+AGG | - | chr1.4:6801593-6801612 | MS.gene058420:CDS | 45.0% |
| ! | AGCAAAACCGCCTCATTTTG+TGG | - | chr1.4:6801549-6801568 | MS.gene058420:CDS | 45.0% |
| ! | AGTTTTCCACCTGGCGAAAT+CGG | + | chr1.4:6801366-6801385 | None:intergenic | 45.0% |
| ! | CATCTGCTTCTTCGTTTTCG+CGG | - | chr1.4:6801517-6801536 | MS.gene058420:CDS | 45.0% |
| ! | CGTTTTTGTGGAGTGGAAGA+GGG | - | chr1.4:6801594-6801613 | MS.gene058420:CDS | 45.0% |
| !! | ACGCTTGTTCTAACCGGTTT+TGG | + | chr1.4:6801171-6801190 | None:intergenic | 45.0% |
| AAGCACAGAAAATCAGGGCG+AGG | - | chr1.4:6801272-6801291 | MS.gene058420:CDS | 50.0% | |
| ACCGGTTAGAACAAGCGTGT+CGG | - | chr1.4:6801173-6801192 | MS.gene058420:CDS | 50.0% | |
| AGAAAATCAGGGCGAGGAAG+CGG | - | chr1.4:6801278-6801297 | MS.gene058420:CDS | 50.0% | |
| CGAAGAAGCAGATGAACACG+TGG | + | chr1.4:6801511-6801530 | None:intergenic | 50.0% | |
| GAACACATGGGAGACTCATG+AGG | - | chr1.4:6801473-6801492 | MS.gene058420:CDS | 50.0% | |
| GAGCATCTTGGTCGTGATCA+CGG | + | chr1.4:6801029-6801048 | None:intergenic | 50.0% | |
| TGTGAGGAGCTTCCTGTGTA+TGG | - | chr1.4:6801822-6801841 | MS.gene058420:CDS | 50.0% | |
| TTGTGGAGTGGAAGAGGGTA+GGG | - | chr1.4:6801599-6801618 | MS.gene058420:CDS | 50.0% | |
| TTTGTGGAGTGGAAGAGGGT+AGG | - | chr1.4:6801598-6801617 | MS.gene058420:CDS | 50.0% | |
| ! | AGGGGAATCACGTTTTCGAC+AGG | - | chr1.4:6801223-6801242 | MS.gene058420:CDS | 50.0% |
| ! | CAAGCGTGTCGGCATCATTT+AGG | - | chr1.4:6801184-6801203 | MS.gene058420:CDS | 50.0% |
| !! | GTTCTAACCGGTTTTGGCCT+AGG | + | chr1.4:6801165-6801184 | None:intergenic | 50.0% |
| AGTGGAAGAGGGTAGGGCTA+AGG | - | chr1.4:6801605-6801624 | MS.gene058420:CDS | 55.0% | |
| CATCTTGGTCGTGATCACGG+AGG | + | chr1.4:6801026-6801045 | None:intergenic | 55.0% | |
| CGTTCCACCTAGGCCAAAAC+CGG | - | chr1.4:6801155-6801174 | MS.gene058420:CDS | 55.0% | |
| GCCGACACGCTTGTTCTAAC+CGG | + | chr1.4:6801177-6801196 | None:intergenic | 55.0% | |
| ! | AAGCAACCGATTTCGCCAGG+TGG | - | chr1.4:6801357-6801376 | MS.gene058420:CDS | 55.0% |
| ! | GTGAAGCAACCGATTTCGCC+AGG | - | chr1.4:6801354-6801373 | MS.gene058420:CDS | 55.0% |
| !! | CTAACCGGTTTTGGCCTAGG+TGG | + | chr1.4:6801162-6801181 | None:intergenic | 55.0% |
| !! | TCTTCGGATTCTAGCTCCGG+TGG | - | chr1.4:6801072-6801091 | MS.gene058420:CDS | 55.0% |
| AGAGGGTAGGGCTAAGGTGG+AGG | - | chr1.4:6801611-6801630 | MS.gene058420:CDS | 60.0% | |
| CGTCGTGCTTCGTTCCACCT+AGG | - | chr1.4:6801145-6801164 | MS.gene058420:CDS | 60.0% | |
| CTTGGTCGTGATCACGGAGG+TGG | + | chr1.4:6801023-6801042 | None:intergenic | 60.0% | |
| GGAAGAGGGTAGGGCTAAGG+TGG | - | chr1.4:6801608-6801627 | MS.gene058420:CDS | 60.0% | |
| GTCGGAGGAGGAGAATCCAC+CGG | + | chr1.4:6801091-6801110 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 6800760 | 6801863 | 6800760 | ID=MS.gene058420 |
| chr1.4 | mRNA | 6800760 | 6801863 | 6800760 | ID=MS.gene058420.t1;Parent=MS.gene058420 |
| chr1.4 | exon | 6800760 | 6801863 | 6800760 | ID=MS.gene058420.t1.exon1;Parent=MS.gene058420.t1 |
| chr1.4 | CDS | 6800760 | 6801863 | 6800760 | ID=cds.MS.gene058420.t1;Parent=MS.gene058420.t1 |
| Gene Sequence |
| Protein sequence |
