Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20731.t1 | XP_003591541.1 | 96.5 | 170 | 3 | 1 | 1 | 170 | 1 | 167 | 3.40E-82 | 314.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20731.t1 | Q8L4N1 | 31.5 | 162 | 93 | 4 | 19 | 166 | 49 | 206 | 2.7e-11 | 70.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20731.t1 | G7IF74 | 96.5 | 170 | 3 | 1 | 1 | 170 | 1 | 167 | 2.5e-82 | 314.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene048106 | MS.gene20731 | PPI |
MS.gene20731 | MS.gene005525 | PPI |
MS.gene20848 | MS.gene20731 | PPI |
MS.gene20731 | MS.gene037687 | PPI |
MS.gene20731 | MS.gene92557 | PPI |
MS.gene20731 | MS.gene20798 | PPI |
MS.gene07276 | MS.gene20731 | PPI |
MS.gene73234 | MS.gene20731 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20731.t1 | MTR_1g088640 | 96.471 | 170 | 3 | 1 | 1 | 170 | 1 | 167 | 2.96e-117 | 328 |
MS.gene20731.t1 | MTR_1g088640 | 94.706 | 170 | 3 | 2 | 1 | 170 | 1 | 164 | 6.83e-113 | 318 |
MS.gene20731.t1 | MTR_7g108830 | 67.683 | 164 | 48 | 3 | 8 | 170 | 3 | 162 | 1.89e-67 | 202 |
MS.gene20731.t1 | MTR_8g058620 | 67.683 | 164 | 48 | 3 | 8 | 170 | 3 | 162 | 1.89e-67 | 202 |
MS.gene20731.t1 | MTR_1g088620 | 100.000 | 69 | 0 | 0 | 102 | 170 | 218 | 286 | 5.66e-42 | 142 |
MS.gene20731.t1 | MTR_1g087200 | 40.252 | 159 | 90 | 3 | 11 | 166 | 2 | 158 | 1.07e-33 | 117 |
MS.gene20731.t1 | MTR_1g054765 | 40.462 | 173 | 79 | 5 | 18 | 170 | 6 | 174 | 1.60e-32 | 114 |
MS.gene20731.t1 | MTR_1g083950 | 39.474 | 152 | 89 | 2 | 17 | 168 | 11 | 159 | 1.10e-31 | 112 |
MS.gene20731.t1 | MTR_1g054750 | 39.394 | 165 | 86 | 4 | 18 | 170 | 25 | 187 | 4.12e-30 | 108 |
MS.gene20731.t1 | MTR_5g065980 | 32.716 | 162 | 96 | 3 | 16 | 164 | 9 | 170 | 8.36e-22 | 87.0 |
MS.gene20731.t1 | MTR_5g065980 | 32.298 | 161 | 96 | 3 | 16 | 164 | 9 | 168 | 2.35e-21 | 85.9 |
MS.gene20731.t1 | MTR_2g089350 | 29.545 | 176 | 106 | 5 | 7 | 167 | 12 | 184 | 1.59e-16 | 74.3 |
MS.gene20731.t1 | MTR_4g064933 | 32.258 | 155 | 92 | 4 | 19 | 165 | 9 | 158 | 2.18e-15 | 70.1 |
MS.gene20731.t1 | MTR_6g006190 | 24.051 | 158 | 109 | 3 | 17 | 165 | 8 | 163 | 1.32e-12 | 62.8 |
MS.gene20731.t1 | MTR_5g077130 | 29.032 | 155 | 95 | 5 | 19 | 164 | 9 | 157 | 3.58e-12 | 61.6 |
MS.gene20731.t1 | MTR_5g077130 | 28.846 | 156 | 95 | 5 | 19 | 164 | 9 | 158 | 4.97e-12 | 61.2 |
MS.gene20731.t1 | MTR_2g034200 | 28.931 | 159 | 102 | 5 | 19 | 170 | 9 | 163 | 7.47e-12 | 60.5 |
MS.gene20731.t1 | MTR_7g065770 | 29.299 | 157 | 92 | 5 | 19 | 164 | 9 | 157 | 1.58e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20731.t1 | AT2G47710 | 63.522 | 159 | 53 | 2 | 13 | 169 | 6 | 161 | 2.27e-69 | 207 |
MS.gene20731.t1 | AT3G11930 | 41.566 | 166 | 77 | 6 | 17 | 167 | 35 | 195 | 2.36e-33 | 117 |
MS.gene20731.t1 | AT3G11930 | 41.317 | 167 | 77 | 6 | 17 | 167 | 35 | 196 | 3.04e-33 | 117 |
MS.gene20731.t1 | AT3G11930 | 41.071 | 168 | 77 | 6 | 17 | 167 | 35 | 197 | 4.86e-33 | 116 |
MS.gene20731.t1 | AT1G09740 | 38.365 | 159 | 88 | 5 | 17 | 167 | 10 | 166 | 5.89e-28 | 102 |
MS.gene20731.t1 | AT1G09740 | 38.365 | 159 | 88 | 5 | 17 | 167 | 10 | 166 | 5.89e-28 | 102 |
MS.gene20731.t1 | AT3G11930 | 35.751 | 193 | 77 | 7 | 17 | 167 | 35 | 222 | 4.45e-27 | 102 |
MS.gene20731.t1 | AT5G49050 | 43.590 | 117 | 61 | 2 | 13 | 127 | 37 | 150 | 8.75e-26 | 96.7 |
MS.gene20731.t1 | AT3G58450 | 37.349 | 166 | 83 | 5 | 17 | 167 | 32 | 191 | 1.45e-25 | 97.4 |
MS.gene20731.t1 | AT3G62550 | 36.970 | 165 | 86 | 7 | 10 | 165 | 2 | 157 | 1.64e-25 | 96.3 |
MS.gene20731.t1 | AT3G58450 | 36.145 | 166 | 78 | 6 | 17 | 167 | 32 | 184 | 1.01e-24 | 95.1 |
MS.gene20731.t1 | AT1G11360 | 32.386 | 176 | 95 | 6 | 9 | 169 | 32 | 198 | 2.72e-19 | 82.0 |
MS.gene20731.t1 | AT1G11360 | 32.386 | 176 | 95 | 6 | 9 | 169 | 32 | 198 | 2.72e-19 | 82.0 |
MS.gene20731.t1 | AT1G11360 | 32.386 | 176 | 95 | 6 | 9 | 169 | 32 | 198 | 2.72e-19 | 82.0 |
MS.gene20731.t1 | AT1G11360 | 32.386 | 176 | 95 | 6 | 9 | 169 | 32 | 198 | 2.72e-19 | 82.0 |
MS.gene20731.t1 | AT1G68300 | 32.075 | 159 | 101 | 4 | 10 | 164 | 2 | 157 | 2.41e-18 | 77.8 |
MS.gene20731.t1 | AT5G14680 | 27.647 | 170 | 99 | 5 | 12 | 165 | 2 | 163 | 4.29e-16 | 72.0 |
MS.gene20731.t1 | AT3G01520 | 28.676 | 136 | 95 | 2 | 30 | 165 | 30 | 163 | 6.46e-15 | 68.9 |
MS.gene20731.t1 | AT3G53990 | 25.325 | 154 | 102 | 4 | 19 | 164 | 9 | 157 | 3.97e-12 | 61.2 |
MS.gene20731.t1 | AT2G21620 | 30.612 | 147 | 85 | 4 | 17 | 163 | 42 | 171 | 1.61e-11 | 60.5 |
MS.gene20731.t1 | AT2G21620 | 29.932 | 147 | 80 | 4 | 17 | 163 | 42 | 165 | 1.78e-11 | 60.1 |
MS.gene20731.t1 | AT3G17020 | 27.815 | 151 | 103 | 2 | 19 | 164 | 11 | 160 | 5.17e-11 | 58.5 |
Find 29 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGTAGGTAGTCACGGTTAT+GGG | 0.301582 | 1.2:-66288490 | MS.gene20731:CDS |
GTTGTAGGTAGTCACGGTTA+TGG | 0.361010 | 1.2:-66288491 | MS.gene20731:CDS |
CGTGCTTCAATCTTGGTTGT+AGG | 0.387207 | 1.2:-66288506 | MS.gene20731:CDS |
AAAGTATCGTGCTTCAATCT+TGG | 0.402940 | 1.2:-66288513 | MS.gene20731:CDS |
ACTTCTTCTGTTGGCCTCGC+TGG | 0.403590 | 1.2:-66289471 | MS.gene20731:CDS |
ACAGTGCATACGCTCTGAAA+TGG | 0.408844 | 1.2:-66289566 | MS.gene20731:CDS |
AACAAGAACAAGTTTGAAAA+CGG | 0.409228 | 1.2:+66289512 | None:intergenic |
TCTGTTGGCCTCGCTGGTCC+TGG | 0.423133 | 1.2:-66289465 | MS.gene20731:intron |
ACTGGTTGTGATTTCTCTGA+TGG | 0.432899 | 1.2:+66289618 | None:intergenic |
ACGGTTATGGGGCTATAAAA+AGG | 0.451906 | 1.2:-66288478 | MS.gene20731:intron |
CTCAAATCAGAGTCCACAAT+TGG | 0.452134 | 1.2:+66289327 | None:intergenic |
AAGTTTGAAAACGGGATTGT+TGG | 0.453772 | 1.2:+66289521 | None:intergenic |
CCTGCTGCTACTTCTTCTGT+TGG | 0.458113 | 1.2:-66289480 | MS.gene20731:CDS |
ACAAGAACAAGTTTGAAAAC+GGG | 0.472424 | 1.2:+66289513 | None:intergenic |
GAAATCACAACCAGTGATGC+TGG | 0.492989 | 1.2:-66289610 | MS.gene20731:CDS |
TCGATTGCAACCAGCATCAC+TGG | 0.493963 | 1.2:+66289600 | None:intergenic |
CAATTGTGGACTCTGATTTG+AGG | 0.500278 | 1.2:-66289326 | MS.gene20731:CDS |
TCAGGTAAATGATGTAATAG+TGG | 0.511125 | 1.2:-66288582 | MS.gene20731:intron |
ATCTTGGTTGTAGGTAGTCA+CGG | 0.516671 | 1.2:-66288497 | MS.gene20731:CDS |
TGCCAGTATAGATCAGTGCT+TGG | 0.553700 | 1.2:+66287924 | None:intergenic |
TGATGTAATAGTGGAGGTGG+TGG | 0.556420 | 1.2:-66288573 | MS.gene20731:CDS |
AAATGATGTAATAGTGGAGG+TGG | 0.562868 | 1.2:-66288576 | MS.gene20731:CDS |
CCAACAGAAGAAGTAGCAGC+AGG | 0.584368 | 1.2:+66289480 | None:intergenic |
AGTGTACGCAGGAGCTGCTG+AGG | 0.594737 | 1.2:-66289355 | MS.gene20731:CDS |
TGTAGGTAGTCACGGTTATG+GGG | 0.599167 | 1.2:-66288489 | MS.gene20731:CDS |
TTGTGCTAATTAGTGTACGC+AGG | 0.608881 | 1.2:-66289366 | MS.gene20731:intron |
GTAATAGTGGAGGTGGTGGA+AGG | 0.626493 | 1.2:-66288569 | MS.gene20731:CDS |
GGTAAATGATGTAATAGTGG+AGG | 0.637317 | 1.2:-66288579 | MS.gene20731:CDS |
GAATTATACCAGGACCAGCG+AGG | 0.726201 | 1.2:+66289457 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATAAAATTAAAAAGCAAA+AGG | + | chr1.2:66289440-66289459 | None:intergenic | 10.0% |
!! | ATAAAATTATGAAAAGAATT+AGG | + | chr1.2:66288429-66288448 | None:intergenic | 10.0% |
!! | TAAAATTATGAAAAGAATTA+GGG | + | chr1.2:66288428-66288447 | None:intergenic | 10.0% |
!!! | ATGATATTATTTTAGATAAT+AGG | - | chr1.2:66288561-66288580 | MS.gene20731:CDS | 10.0% |
!!! | TTTCATAATTTTATTTGATA+AGG | - | chr1.2:66288435-66288454 | MS.gene20731:intron | 10.0% |
!! | AAAAATGTTAGAATTAAATG+CGG | + | chr1.2:66289223-66289242 | None:intergenic | 15.0% |
!!! | ACTTTTCATTTTATTTATAC+TGG | - | chr1.2:66289461-66289480 | MS.gene20731:intron | 15.0% |
!!! | ATTACATTTATTCATGTTTT+TGG | + | chr1.2:66289290-66289309 | None:intergenic | 15.0% |
!!! | ATTTTATTTGATAAGGAAAA+TGG | - | chr1.2:66288442-66288461 | MS.gene20731:intron | 15.0% |
!!! | CTTTTCATTTTATTTATACT+GGG | - | chr1.2:66289462-66289481 | MS.gene20731:intron | 15.0% |
!!! | TTTTCATTTTATTTATACTG+GGG | - | chr1.2:66289463-66289482 | MS.gene20731:intron | 15.0% |
!! | AAAATTAAAAAGCAAAAGGA+AGG | + | chr1.2:66289436-66289455 | None:intergenic | 20.0% |
!! | AACAAAAATAGAAACACATA+CGG | + | chr1.2:66288330-66288349 | None:intergenic | 20.0% |
!! | TTAAGTATTTATGTCATATG+TGG | - | chr1.2:66288947-66288966 | MS.gene20731:intron | 20.0% |
!!! | TTTCATTTTATTTATACTGG+GGG | - | chr1.2:66289464-66289483 | MS.gene20731:intron | 20.0% |
!!! | TTTGTTGATGTTTTGATAAT+TGG | - | chr1.2:66288180-66288199 | MS.gene20731:intron | 20.0% |
! | AACAAGAACAAGTTTGAAAA+CGG | + | chr1.2:66288069-66288088 | None:intergenic | 25.0% |
! | ATGAAATTGAGAATTATACC+AGG | + | chr1.2:66288134-66288153 | None:intergenic | 25.0% |
!!! | TGAATTTTCTCTGGTTTATA+CGG | - | chr1.2:66288477-66288496 | MS.gene20731:intron | 25.0% |
!!! | TTAATACACACAAGTTTTGT+TGG | + | chr1.2:66288866-66288885 | None:intergenic | 25.0% |
!!! | TTTTTTGCTAGTTTGATGAA+AGG | - | chr1.2:66288673-66288692 | MS.gene20731:intron | 25.0% |
AATTAAATGCGGCATATTCA+TGG | + | chr1.2:66289212-66289231 | None:intergenic | 30.0% | |
ACAAGAACAAGTTTGAAAAC+GGG | + | chr1.2:66288068-66288087 | None:intergenic | 30.0% | |
CCTGTATTTATATGTTGTGT+GGG | - | chr1.2:66288501-66288520 | MS.gene20731:CDS | 30.0% | |
TACAATTATCATCCTTCGTT+TGG | - | chr1.2:66289140-66289159 | MS.gene20731:intron | 30.0% | |
TCAGGTAAATGATGTAATAG+TGG | - | chr1.2:66288996-66289015 | MS.gene20731:intron | 30.0% | |
TCCTGTATTTATATGTTGTG+TGG | - | chr1.2:66288500-66288519 | MS.gene20731:CDS | 30.0% | |
TTACCATCATCTTTGTATGT+CGG | - | chr1.2:66288787-66288806 | MS.gene20731:intron | 30.0% | |
! | TAAGGAAAATGGCTTTTGAA+TGG | - | chr1.2:66288453-66288472 | MS.gene20731:intron | 30.0% |
! | TAATTTTGTGTTTGTGATCG+TGG | + | chr1.2:66289262-66289281 | None:intergenic | 30.0% |
! | TCTGATAACTGAATTTTCTC+AGG | - | chr1.2:66288978-66288997 | MS.gene20731:intron | 30.0% |
! | TTGAATGGATGAATTTTCTC+TGG | - | chr1.2:66288468-66288487 | MS.gene20731:intron | 30.0% |
!! | TTTTTCTACTTTCGAGTCTA+AGG | - | chr1.2:66288902-66288921 | MS.gene20731:intron | 30.0% |
!!! | CTTTTCTGAAACTTGTGAAT+AGG | - | chr1.2:66289181-66289200 | MS.gene20731:intron | 30.0% |
AAGTTTGAAAACGGGATTGT+TGG | + | chr1.2:66288060-66288079 | None:intergenic | 35.0% | |
ACCAGTTGAAGCAATTTAAG+TGG | + | chr1.2:66288757-66288776 | None:intergenic | 35.0% | |
AGGTTAAAGATTTCAGTGGA+TGG | + | chr1.2:66289316-66289335 | None:intergenic | 35.0% | |
ATCTTTAACCTGCAGAAGAT+AGG | - | chr1.2:66289325-66289344 | MS.gene20731:CDS | 35.0% | |
CAAAAGGAAGGTTTGATTGT+TGG | + | chr1.2:66289424-66289443 | None:intergenic | 35.0% | |
CCCACACAACATATAAATAC+AGG | + | chr1.2:66288504-66288523 | None:intergenic | 35.0% | |
GGTAAATGATGTAATAGTGG+AGG | - | chr1.2:66288999-66289018 | MS.gene20731:intron | 35.0% | |
TAACCGACATACAAAGATGA+TGG | + | chr1.2:66288793-66288812 | None:intergenic | 35.0% | |
TATGGGGCTATAAAAAGGTA+TGG | - | chr1.2:66289105-66289124 | MS.gene20731:intron | 35.0% | |
TCCACTTAAATTGCTTCAAC+TGG | - | chr1.2:66288753-66288772 | MS.gene20731:intron | 35.0% | |
TTACATATCACTCCAAACGA+AGG | + | chr1.2:66289155-66289174 | None:intergenic | 35.0% | |
TTTATATGTTGTGTGGGACT+TGG | - | chr1.2:66288507-66288526 | MS.gene20731:CDS | 35.0% | |
! | AAAAAGGTATGGCTTCATTG+TGG | - | chr1.2:66289116-66289135 | MS.gene20731:intron | 35.0% |
! | AAATGATGTAATAGTGGAGG+TGG | - | chr1.2:66289002-66289021 | MS.gene20731:intron | 35.0% |
! | TCGGTTAATTGTCATGCTTT+TGG | - | chr1.2:66288806-66288825 | MS.gene20731:intron | 35.0% |
!! | AAAGTATCGTGCTTCAATCT+TGG | - | chr1.2:66289065-66289084 | MS.gene20731:intron | 35.0% |
ACGGTTATGGGGCTATAAAA+AGG | - | chr1.2:66289100-66289119 | MS.gene20731:intron | 40.0% | |
ACTGGTTGTGATTTCTCTGA+TGG | + | chr1.2:66287963-66287982 | None:intergenic | 40.0% | |
ATCTTGGTTGTAGGTAGTCA+CGG | - | chr1.2:66289081-66289100 | MS.gene20731:intron | 40.0% | |
CTCAAATCAGAGTCCACAAT+TGG | + | chr1.2:66288254-66288273 | None:intergenic | 40.0% | |
CTGCAGGTTAAAGATTTCAG+TGG | + | chr1.2:66289320-66289339 | None:intergenic | 40.0% | |
TCGAGTGTAGTGAGTGAATT+AGG | + | chr1.2:66289541-66289560 | None:intergenic | 40.0% | |
TTGTAGGTAGTCACGGTTAT+GGG | - | chr1.2:66289088-66289107 | MS.gene20731:intron | 40.0% | |
TTGTGCTAATTAGTGTACGC+AGG | - | chr1.2:66288212-66288231 | MS.gene20731:intron | 40.0% | |
! | ACTCGACTCTTTTAATCTGC+AGG | - | chr1.2:66289555-66289574 | MS.gene20731:CDS | 40.0% |
! | CAATTGTGGACTCTGATTTG+AGG | - | chr1.2:66288252-66288271 | MS.gene20731:intron | 40.0% |
! | CTCGACTCTTTTAATCTGCA+GGG | - | chr1.2:66289556-66289575 | MS.gene20731:CDS | 40.0% |
! | TTTTGTGTTTGTGATCGTGG+TGG | + | chr1.2:66289259-66289278 | None:intergenic | 40.0% |
AGTTCCATACCCACATCCTT+AGG | - | chr1.2:66288839-66288858 | MS.gene20731:intron | 45.0% | |
CGTGCTTCAATCTTGGTTGT+AGG | - | chr1.2:66289072-66289091 | MS.gene20731:intron | 45.0% | |
GAAATCACAACCAGTGATGC+TGG | - | chr1.2:66287968-66287987 | MS.gene20731:CDS | 45.0% | |
GGGACTTGGAGCATACTATA+TGG | - | chr1.2:66288521-66288540 | MS.gene20731:CDS | 45.0% | |
GTTCCATACCCACATCCTTA+GGG | - | chr1.2:66288840-66288859 | MS.gene20731:intron | 45.0% | |
GTTGTAGGTAGTCACGGTTA+TGG | - | chr1.2:66289087-66289106 | MS.gene20731:intron | 45.0% | |
TAGCTGAATGCATCATGCTC+AGG | - | chr1.2:66288598-66288617 | MS.gene20731:intron | 45.0% | |
TGTAGGTAGTCACGGTTATG+GGG | - | chr1.2:66289089-66289108 | MS.gene20731:intron | 45.0% | |
TTTGTTGGCCCTAAGGATGT+GGG | + | chr1.2:66288851-66288870 | None:intergenic | 45.0% | |
! | GACTCTTTTAATCTGCAGGG+CGG | - | chr1.2:66289559-66289578 | MS.gene20731:CDS | 45.0% |
! | TGATGTAATAGTGGAGGTGG+TGG | - | chr1.2:66289005-66289024 | MS.gene20731:intron | 45.0% |
! | TGCTGAGGTTTTGCCAATTG+TGG | - | chr1.2:66288238-66288257 | MS.gene20731:intron | 45.0% |
! | TTAATCTGCAGGGCGGTTTT+AGG | - | chr1.2:66289566-66289585 | MS.gene20731:CDS | 45.0% |
! | TTTTGTTGGCCCTAAGGATG+TGG | + | chr1.2:66288852-66288871 | None:intergenic | 45.0% |
!! | ACAGTGCATACGCTCTGAAA+TGG | - | chr1.2:66288012-66288031 | MS.gene20731:intron | 45.0% |
!!! | CACAAGTTTTGTTGGCCCTA+AGG | + | chr1.2:66288858-66288877 | None:intergenic | 45.0% |
CCAACAGAAGAAGTAGCAGC+AGG | + | chr1.2:66288101-66288120 | None:intergenic | 50.0% | |
GAATTATACCAGGACCAGCG+AGG | + | chr1.2:66288124-66288143 | None:intergenic | 50.0% | |
TACTGCTGCCTATCTTCTGC+AGG | + | chr1.2:66289336-66289355 | None:intergenic | 50.0% | |
TCGATTGCAACCAGCATCAC+TGG | + | chr1.2:66287981-66288000 | None:intergenic | 50.0% | |
! | CCTGCTGCTACTTCTTCTGT+TGG | - | chr1.2:66288098-66288117 | MS.gene20731:intron | 50.0% |
!! | GTAATAGTGGAGGTGGTGGA+AGG | - | chr1.2:66289009-66289028 | MS.gene20731:intron | 50.0% |
TGGCCCTAAGGATGTGGGTA+TGG | + | chr1.2:66288846-66288865 | None:intergenic | 55.0% | |
! | ACTTCTTCTGTTGGCCTCGC+TGG | - | chr1.2:66288107-66288126 | MS.gene20731:intron | 55.0% |
AGTGTACGCAGGAGCTGCTG+AGG | - | chr1.2:66288223-66288242 | MS.gene20731:intron | 60.0% | |
! | TCTGTTGGCCTCGCTGGTCC+TGG | - | chr1.2:66288113-66288132 | MS.gene20731:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 66287936 | 66289664 | 66287936 | ID=MS.gene20731 |
chr1.2 | mRNA | 66287936 | 66289664 | 66287936 | ID=MS.gene20731.t1;Parent=MS.gene20731 |
chr1.2 | exon | 66289466 | 66289664 | 66289466 | ID=MS.gene20731.t1.exon1;Parent=MS.gene20731.t1 |
chr1.2 | CDS | 66289466 | 66289664 | 66289466 | ID=cds.MS.gene20731.t1;Parent=MS.gene20731.t1 |
chr1.2 | exon | 66289272 | 66289375 | 66289272 | ID=MS.gene20731.t1.exon2;Parent=MS.gene20731.t1 |
chr1.2 | CDS | 66289272 | 66289375 | 66289272 | ID=cds.MS.gene20731.t1;Parent=MS.gene20731.t1 |
chr1.2 | exon | 66288479 | 66288600 | 66288479 | ID=MS.gene20731.t1.exon3;Parent=MS.gene20731.t1 |
chr1.2 | CDS | 66288479 | 66288600 | 66288479 | ID=cds.MS.gene20731.t1;Parent=MS.gene20731.t1 |
chr1.2 | exon | 66287936 | 66288023 | 66287936 | ID=MS.gene20731.t1.exon4;Parent=MS.gene20731.t1 |
chr1.2 | CDS | 66287936 | 66288023 | 66287936 | ID=cds.MS.gene20731.t1;Parent=MS.gene20731.t1 |
Gene Sequence |
Protein sequence |