Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21133.t1 | XP_003591301.1 | 98.4 | 505 | 8 | 0 | 1 | 505 | 1 | 505 | 4.40E-258 | 900.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21133.t1 | Q9M115 | 62.8 | 514 | 172 | 9 | 2 | 505 | 4 | 508 | 2.2e-149 | 530.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21133.t1 | G7IBQ1 | 98.4 | 505 | 8 | 0 | 1 | 505 | 1 | 505 | 3.1e-258 | 900.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049328 | MS.gene21133 | 0.811344 | 7.34E-51 | -1.69E-46 |
| MS.gene050297 | MS.gene21133 | 0.802883 | 4.54E-49 | -1.69E-46 |
| MS.gene050310 | MS.gene21133 | 0.803984 | 2.68E-49 | -1.69E-46 |
| MS.gene051021 | MS.gene21133 | 0.802171 | 6.37E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene21133 | 0.820004 | 8.62E-53 | -1.69E-46 |
| MS.gene051671 | MS.gene21133 | 0.806118 | 9.61E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene21133 | 0.811541 | 6.65E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene21133 | 0.809035 | 2.31E-50 | -1.69E-46 |
| MS.gene052731 | MS.gene21133 | 0.805043 | 1.61E-49 | -1.69E-46 |
| MS.gene052732 | MS.gene21133 | 0.829386 | 5.30E-55 | -1.69E-46 |
| MS.gene053144 | MS.gene21133 | 0.833803 | 4.32E-56 | -1.69E-46 |
| MS.gene054584 | MS.gene21133 | 0.839834 | 1.25E-57 | -1.69E-46 |
| MS.gene055465 | MS.gene21133 | 0.810866 | 9.31E-51 | -1.69E-46 |
| MS.gene055468 | MS.gene21133 | 0.800462 | 1.42E-48 | -1.69E-46 |
| MS.gene055537 | MS.gene21133 | 0.828858 | 7.12E-55 | -1.69E-46 |
| MS.gene055580 | MS.gene21133 | -0.806102 | 9.68E-50 | -1.69E-46 |
| MS.gene055764 | MS.gene21133 | 0.801764 | 7.72E-49 | -1.69E-46 |
| MS.gene057004 | MS.gene21133 | 0.819928 | 8.98E-53 | -1.69E-46 |
| MS.gene058197 | MS.gene21133 | 0.832561 | 8.81E-56 | -1.69E-46 |
| MS.gene058198 | MS.gene21133 | 0.832526 | 8.99E-56 | -1.69E-46 |
| MS.gene059300 | MS.gene21133 | 0.826692 | 2.36E-54 | -1.69E-46 |
| MS.gene060519 | MS.gene21133 | 0.807892 | 4.05E-50 | -1.69E-46 |
| MS.gene06057 | MS.gene21133 | 0.818239 | 2.18E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21133.t1 | MTR_1g085980 | 98.416 | 505 | 8 | 0 | 1 | 505 | 1 | 505 | 0.0 | 1017 |
| MS.gene21133.t1 | MTR_3g115950 | 34.937 | 395 | 235 | 7 | 2 | 393 | 3 | 378 | 1.05e-68 | 232 |
| MS.gene21133.t1 | MTR_4g076120 | 37.346 | 324 | 175 | 5 | 1 | 298 | 2 | 323 | 2.60e-67 | 230 |
| MS.gene21133.t1 | MTR_4g082560 | 27.883 | 581 | 311 | 12 | 1 | 488 | 1 | 566 | 2.74e-62 | 214 |
| MS.gene21133.t1 | MTR_5g042870 | 31.368 | 475 | 246 | 13 | 1 | 421 | 1 | 449 | 5.87e-57 | 200 |
| MS.gene21133.t1 | MTR_3g115950 | 37.597 | 258 | 144 | 4 | 141 | 393 | 59 | 304 | 1.83e-50 | 181 |
| MS.gene21133.t1 | MTR_4g076120 | 52.055 | 146 | 70 | 0 | 153 | 298 | 104 | 249 | 8.21e-50 | 181 |
| MS.gene21133.t1 | MTR_6g033315 | 27.228 | 202 | 121 | 5 | 155 | 344 | 149 | 336 | 2.51e-14 | 75.5 |
| MS.gene21133.t1 | MTR_5g042870 | 28.395 | 243 | 117 | 9 | 210 | 421 | 82 | 298 | 2.63e-14 | 75.5 |
| MS.gene21133.t1 | MTR_4g116160 | 40.909 | 88 | 46 | 2 | 139 | 220 | 353 | 440 | 3.89e-14 | 75.1 |
| MS.gene21133.t1 | MTR_4g116160 | 40.909 | 88 | 46 | 2 | 139 | 220 | 353 | 440 | 5.50e-14 | 75.1 |
| MS.gene21133.t1 | MTR_4g116160 | 40.909 | 88 | 46 | 2 | 139 | 220 | 180 | 267 | 5.51e-14 | 74.7 |
| MS.gene21133.t1 | MTR_7g114080 | 26.667 | 225 | 137 | 7 | 114 | 328 | 127 | 333 | 1.85e-13 | 72.4 |
| MS.gene21133.t1 | MTR_7g114080 | 28.070 | 228 | 139 | 7 | 114 | 328 | 127 | 342 | 3.37e-13 | 71.6 |
| MS.gene21133.t1 | MTR_7g114080 | 36.842 | 114 | 55 | 5 | 102 | 211 | 117 | 217 | 3.26e-12 | 68.2 |
| MS.gene21133.t1 | MTR_6g038020 | 30.075 | 133 | 83 | 3 | 155 | 287 | 136 | 258 | 4.42e-12 | 68.2 |
| MS.gene21133.t1 | MTR_1g098390 | 30.075 | 133 | 84 | 3 | 155 | 287 | 135 | 258 | 4.84e-12 | 68.2 |
| MS.gene21133.t1 | MTR_6g038020 | 30.075 | 133 | 83 | 3 | 155 | 287 | 139 | 261 | 5.10e-12 | 68.2 |
| MS.gene21133.t1 | MTR_4g021795 | 26.816 | 179 | 100 | 5 | 141 | 305 | 87 | 248 | 7.29e-12 | 66.6 |
| MS.gene21133.t1 | MTR_3g098840 | 28.571 | 133 | 85 | 3 | 155 | 287 | 150 | 272 | 7.39e-12 | 67.8 |
| MS.gene21133.t1 | MTR_7g088360 | 30.075 | 133 | 79 | 3 | 155 | 287 | 161 | 279 | 8.06e-12 | 67.4 |
| MS.gene21133.t1 | MTR_4g092760 | 39.796 | 98 | 51 | 4 | 157 | 251 | 364 | 456 | 8.39e-12 | 67.8 |
| MS.gene21133.t1 | MTR_4g092760 | 38.776 | 98 | 52 | 4 | 157 | 251 | 275 | 367 | 1.03e-11 | 67.4 |
| MS.gene21133.t1 | MTR_7g114080 | 36.842 | 114 | 55 | 5 | 102 | 211 | 117 | 217 | 1.22e-11 | 66.2 |
| MS.gene21133.t1 | MTR_5g023230 | 42.373 | 59 | 34 | 0 | 158 | 216 | 170 | 228 | 2.49e-11 | 64.3 |
| MS.gene21133.t1 | MTR_7g088350 | 27.068 | 133 | 81 | 2 | 155 | 287 | 162 | 278 | 2.63e-11 | 66.2 |
| MS.gene21133.t1 | MTR_7g083480 | 29.545 | 132 | 81 | 3 | 157 | 287 | 151 | 271 | 3.44e-11 | 65.5 |
| MS.gene21133.t1 | MTR_1g094610 | 33.824 | 136 | 70 | 5 | 169 | 303 | 108 | 224 | 5.85e-11 | 63.5 |
| MS.gene21133.t1 | MTR_5g023230 | 42.373 | 59 | 34 | 0 | 158 | 216 | 150 | 208 | 7.01e-11 | 63.9 |
| MS.gene21133.t1 | MTR_5g023230 | 42.373 | 59 | 34 | 0 | 158 | 216 | 170 | 228 | 7.42e-11 | 63.9 |
| MS.gene21133.t1 | MTR_1g112830 | 45.000 | 60 | 33 | 0 | 157 | 216 | 462 | 521 | 9.05e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21133.t1 | AT4G01730 | 63.230 | 514 | 170 | 9 | 2 | 505 | 4 | 508 | 0.0 | 543 |
| MS.gene21133.t1 | AT2G33640 | 34.750 | 400 | 209 | 9 | 2 | 370 | 3 | 381 | 3.73e-71 | 237 |
| MS.gene21133.t1 | AT3G22180 | 36.170 | 329 | 179 | 5 | 1 | 306 | 2 | 322 | 4.49e-65 | 224 |
| MS.gene21133.t1 | AT4G15080 | 31.743 | 482 | 253 | 11 | 1 | 425 | 2 | 464 | 1.74e-64 | 222 |
| MS.gene21133.t1 | AT4G15080 | 31.743 | 482 | 253 | 11 | 1 | 425 | 2 | 464 | 1.74e-64 | 222 |
| MS.gene21133.t1 | AT1G69420 | 32.075 | 424 | 232 | 11 | 1 | 385 | 1 | 407 | 1.14e-61 | 212 |
| MS.gene21133.t1 | AT1G69420 | 32.075 | 424 | 232 | 11 | 1 | 385 | 1 | 407 | 1.14e-61 | 212 |
| MS.gene21133.t1 | AT3G26935 | 32.090 | 134 | 79 | 3 | 155 | 287 | 148 | 270 | 1.53e-15 | 79.3 |
| MS.gene21133.t1 | AT3G48760 | 27.228 | 202 | 128 | 5 | 155 | 348 | 157 | 347 | 6.17e-15 | 77.4 |
| MS.gene21133.t1 | AT5G20350 | 36.154 | 130 | 74 | 4 | 92 | 221 | 316 | 436 | 1.04e-13 | 74.3 |
| MS.gene21133.t1 | AT5G41060 | 29.851 | 134 | 82 | 3 | 155 | 287 | 79 | 201 | 2.56e-13 | 71.6 |
| MS.gene21133.t1 | AT5G41060 | 29.851 | 134 | 82 | 3 | 155 | 287 | 79 | 201 | 2.56e-13 | 71.6 |
| MS.gene21133.t1 | AT3G04970 | 42.105 | 76 | 39 | 2 | 153 | 224 | 66 | 140 | 2.72e-13 | 71.2 |
| MS.gene21133.t1 | AT2G14255 | 43.836 | 73 | 41 | 0 | 148 | 220 | 355 | 427 | 2.81e-13 | 72.8 |
| MS.gene21133.t1 | AT5G41060 | 29.851 | 134 | 82 | 3 | 155 | 287 | 146 | 268 | 4.50e-13 | 71.6 |
| MS.gene21133.t1 | AT3G56930 | 28.148 | 135 | 83 | 3 | 155 | 287 | 145 | 267 | 4.74e-13 | 71.6 |
| MS.gene21133.t1 | AT4G24630 | 30.075 | 133 | 83 | 3 | 155 | 287 | 135 | 257 | 5.56e-13 | 71.2 |
| MS.gene21133.t1 | AT5G41060 | 29.851 | 134 | 82 | 3 | 155 | 287 | 131 | 253 | 5.74e-13 | 70.9 |
| MS.gene21133.t1 | AT3G04970 | 43.836 | 73 | 36 | 2 | 153 | 221 | 153 | 224 | 6.16e-13 | 70.1 |
| MS.gene21133.t1 | AT3G04970 | 42.105 | 76 | 39 | 2 | 153 | 224 | 153 | 227 | 7.65e-13 | 70.5 |
| MS.gene21133.t1 | AT5G50020 | 30.075 | 133 | 83 | 4 | 155 | 287 | 135 | 257 | 1.84e-12 | 69.7 |
| MS.gene21133.t1 | AT5G50020 | 30.075 | 133 | 83 | 4 | 155 | 287 | 165 | 287 | 2.23e-12 | 69.3 |
| MS.gene21133.t1 | AT5G04270 | 29.921 | 127 | 75 | 3 | 169 | 295 | 105 | 217 | 2.57e-12 | 67.8 |
| MS.gene21133.t1 | AT3G09320 | 29.677 | 155 | 95 | 4 | 141 | 293 | 80 | 222 | 6.73e-12 | 66.6 |
| MS.gene21133.t1 | AT4G22750 | 26.291 | 213 | 135 | 5 | 85 | 285 | 33 | 235 | 1.97e-11 | 65.5 |
| MS.gene21133.t1 | AT5G05070 | 27.820 | 133 | 82 | 3 | 155 | 287 | 170 | 288 | 6.45e-11 | 64.7 |
Find 106 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGACTTGAAAGCCTTAA+TGG | 0.179701 | 1.4:-67938606 | None:intergenic |
| CCCCTTTGATCAACACAAAA+AGG | 0.201505 | 1.4:+67938346 | MS.gene21133:CDS |
| CTTAACTATGGATTCATTAT+TGG | 0.227661 | 1.4:+67936857 | MS.gene21133:CDS |
| AGAGAACTACCTTTCGTATT+AGG | 0.235966 | 1.4:-67937851 | None:intergenic |
| CCTGCAGAAAATCTTCTTCT+TGG | 0.247950 | 1.4:-67938624 | None:intergenic |
| GCAATTCCTAAGCTTAACTA+TGG | 0.264138 | 1.4:+67936845 | MS.gene21133:CDS |
| TTTCTTCTTCTTCTTGAAAC+TGG | 0.265760 | 1.4:-67936807 | None:intergenic |
| AATATTGGCAATGAGGGATT+TGG | 0.269143 | 1.4:+67938543 | MS.gene21133:CDS |
| CATGGGGATTTATAGTTTCC+TGG | 0.270284 | 1.4:+67935612 | MS.gene21133:CDS |
| ACGTCCTCTTCATCCTTTAC+AGG | 0.290395 | 1.4:+67935480 | MS.gene21133:CDS |
| AACTTCATGTATCACCATTA+AGG | 0.298327 | 1.4:+67938592 | MS.gene21133:CDS |
| CTTAGGAATTGCATTCCTTT+TGG | 0.301238 | 1.4:-67936834 | None:intergenic |
| AGTGGTTGAATAACTGTATT+GGG | 0.305251 | 1.4:+67937356 | MS.gene21133:intron |
| AATTACCATGAAGGAAAATA+TGG | 0.329971 | 1.4:-67935701 | None:intergenic |
| CTGCAATTGCGATATTTATC+AGG | 0.330793 | 1.4:+67937564 | MS.gene21133:CDS |
| CAGTGGTTGAATAACTGTAT+TGG | 0.338312 | 1.4:+67937355 | MS.gene21133:intron |
| AAATACAATGCCTACGATCT+TGG | 0.340037 | 1.4:-67938807 | None:intergenic |
| AATACAATGCCTACGATCTT+GGG | 0.349348 | 1.4:-67938806 | None:intergenic |
| AATGAGAACTAACCATTAAC+AGG | 0.352539 | 1.4:-67937420 | None:intergenic |
| AGAGAATGAAGCCATGGAAT+TGG | 0.360067 | 1.4:+67938099 | MS.gene21133:CDS |
| GCTTATAGTTCAGCTGCATT+GGG | 0.362020 | 1.4:+67937804 | MS.gene21133:CDS |
| AGCTTATAGTTCAGCTGCAT+TGG | 0.379994 | 1.4:+67937803 | MS.gene21133:CDS |
| AAGGGTTTGATCACCATTGC+AGG | 0.380383 | 1.4:+67937242 | MS.gene21133:CDS |
| TTGAAAATGTGACAGTTTGT+AGG | 0.405221 | 1.4:+67935589 | MS.gene21133:intron |
| GAATAGAAAAGGAGCTTCAT+AGG | 0.409924 | 1.4:+67937606 | MS.gene21133:CDS |
| TCTTTCATAACAAATGGAAA+TGG | 0.412686 | 1.4:-67936992 | None:intergenic |
| ATATTGGCAATGAGGGATTT+GGG | 0.413742 | 1.4:+67938544 | MS.gene21133:CDS |
| AGCTTGAAACACATATTTCC+AGG | 0.415244 | 1.4:+67938739 | MS.gene21133:CDS |
| TCATCATCTTTCATAACAAA+TGG | 0.417582 | 1.4:-67936998 | None:intergenic |
| TCAGGTGCTTTGTGGATAAG+AGG | 0.417899 | 1.4:+67937582 | MS.gene21133:CDS |
| AATGAACTGTGCTCCCTCAT+TGG | 0.434720 | 1.4:-67938468 | None:intergenic |
| ATGTCGTCCTCTTTAAGATC+AGG | 0.449853 | 1.4:-67937034 | None:intergenic |
| GTGTGTTTCTATACTTTCCT+CGG | 0.453785 | 1.4:+67935637 | MS.gene21133:CDS |
| GAGGACCTATGACTATATTC+TGG | 0.454122 | 1.4:+67938066 | MS.gene21133:CDS |
| CTTTCATAACAAATGGAAAT+GGG | 0.456489 | 1.4:-67936991 | None:intergenic |
| TCAGATGACTATTACACATA+TGG | 0.457257 | 1.4:-67937666 | None:intergenic |
| ATGAATCCATAGTTAAGCTT+AGG | 0.465933 | 1.4:-67936851 | None:intergenic |
| TTGAAACTGGTTCTGTCTGT+AGG | 0.467295 | 1.4:-67936794 | None:intergenic |
| TGTTCAGTTATCAGCAAAGA+TGG | 0.472599 | 1.4:+67938771 | MS.gene21133:CDS |
| GATATTTATCAGGTGCTTTG+TGG | 0.473980 | 1.4:+67937574 | MS.gene21133:CDS |
| TTCATTAAGACCTCTTCCAT+TGG | 0.478810 | 1.4:+67938485 | MS.gene21133:CDS |
| TGAAGTTAGCAGGTGTGTCT+AGG | 0.480378 | 1.4:+67938715 | MS.gene21133:CDS |
| AAAATCCTTGACATTAGTGT+TGG | 0.485995 | 1.4:-67938184 | None:intergenic |
| AACTGAACATAGAACCTGCC+TGG | 0.487655 | 1.4:-67938757 | None:intergenic |
| CACTCGTCTTCAACGGATCA+AGG | 0.488073 | 1.4:-67936949 | None:intergenic |
| TTCACGTAAGCATTAACCCT+TGG | 0.489341 | 1.4:+67938370 | MS.gene21133:CDS |
| ACTTGTAATCGTTGCGTTGA+AGG | 0.491089 | 1.4:+67937223 | MS.gene21133:CDS |
| ATGTGACAGTTTGTAGGCAT+GGG | 0.494330 | 1.4:+67935595 | MS.gene21133:intron |
| TGTGAACAGCTCATCATTGA+AGG | 0.494729 | 1.4:+67937536 | MS.gene21133:intron |
| GGGTGGAAAAGAAGTTGCTT+AGG | 0.494730 | 1.4:+67936906 | MS.gene21133:CDS |
| CATTGCCAGAATATAGTCAT+AGG | 0.496409 | 1.4:-67938071 | None:intergenic |
| GGATAAGAGGGGAATAGAAA+AGG | 0.502714 | 1.4:+67937595 | MS.gene21133:CDS |
| GTCAACTTTACGAGTTTCCA+AGG | 0.513589 | 1.4:-67938387 | None:intergenic |
| TTTGTTTCATAAAGGGGATG+AGG | 0.518890 | 1.4:+67938047 | MS.gene21133:intron |
| CTTGTAATCGTTGCGTTGAA+GGG | 0.519111 | 1.4:+67937224 | MS.gene21133:CDS |
| ATGGTGGCAAGAAGTCCTCT+TGG | 0.521474 | 1.4:-67937647 | None:intergenic |
| CAGGTGCTTTGTGGATAAGA+GGG | 0.525174 | 1.4:+67937583 | MS.gene21133:CDS |
| ACTTTCCTCGGACTCTTCCT+CGG | 0.525401 | 1.4:+67935649 | MS.gene21133:CDS |
| TGAAACACATATTTCCAGGC+AGG | 0.526662 | 1.4:+67938743 | MS.gene21133:CDS |
| ACGCGGACCATTGACGAATG+TGG | 0.527722 | 1.4:+67938515 | MS.gene21133:CDS |
| TACTTGCAGCTGAGAAAGCA+AGG | 0.530537 | 1.4:+67938424 | MS.gene21133:CDS |
| GAAGTTAGCAGGTGTGTCTA+GGG | 0.530558 | 1.4:+67938716 | MS.gene21133:CDS |
| ACTTGTGCACTCGTCTTCAA+CGG | 0.546561 | 1.4:-67936956 | None:intergenic |
| ACAAATGGAAATGGGAGAAG+AGG | 0.548200 | 1.4:-67936983 | None:intergenic |
| CAATGCTGTCATCTGATGAA+AGG | 0.552272 | 1.4:-67938141 | None:intergenic |
| GTTGAAGACGAGTGCACAAG+TGG | 0.554243 | 1.4:+67936958 | MS.gene21133:CDS |
| ACACTATGAGACGCCATGGT+TGG | 0.555301 | 1.4:+67935455 | None:intergenic |
| AATGTGACAGTTTGTAGGCA+TGG | 0.560320 | 1.4:+67935594 | MS.gene21133:intron |
| ATCAAATGACTCCAATTCCA+TGG | 0.560589 | 1.4:-67938110 | None:intergenic |
| CAGCTGAGAAAGCAAGGGAA+AGG | 0.566987 | 1.4:+67938430 | MS.gene21133:CDS |
| GAATAGATAAATTACCATGA+AGG | 0.567650 | 1.4:-67935710 | None:intergenic |
| TTAGTGTTATCTCAGCAGTT+CGG | 0.574132 | 1.4:-67935675 | None:intergenic |
| TTTACCTGTAAAGGATGAAG+AGG | 0.576281 | 1.4:-67935484 | None:intergenic |
| GAGAGAAGAGAATGAAGCCA+TGG | 0.580808 | 1.4:+67938093 | MS.gene21133:CDS |
| TGTCGTCCCTGATCTTAAAG+AGG | 0.582192 | 1.4:+67937027 | MS.gene21133:CDS |
| TTTGTGTTGATCAAAGGGGA+AGG | 0.592051 | 1.4:-67938342 | None:intergenic |
| CGTGCGAGAAAGACCAATGA+GGG | 0.592418 | 1.4:+67938455 | MS.gene21133:CDS |
| AAAAGCCAACACTAATGTCA+AGG | 0.594065 | 1.4:+67938179 | MS.gene21133:CDS |
| TCACGTTCTCCTAATACGAA+AGG | 0.596273 | 1.4:+67937842 | MS.gene21133:CDS |
| AAGTATAGAAACACACCACC+AGG | 0.598487 | 1.4:-67935630 | None:intergenic |
| AACAGATACTGACCCTGCAA+TGG | 0.599614 | 1.4:-67937255 | None:intergenic |
| AGGGTTTGATCACCATTGCA+GGG | 0.600426 | 1.4:+67937243 | MS.gene21133:CDS |
| ATACAATGCCTACGATCTTG+GGG | 0.601194 | 1.4:-67938805 | None:intergenic |
| TGTCGTCCTCTTTAAGATCA+GGG | 0.605943 | 1.4:-67937033 | None:intergenic |
| AATGCCTACGATCTTGGGGA+TGG | 0.606261 | 1.4:-67938801 | None:intergenic |
| ATTCATTATTGGTCAGATTG+TGG | 0.609221 | 1.4:+67936868 | MS.gene21133:CDS |
| TTATTGGTCAGATTGTGGTG+AGG | 0.621959 | 1.4:+67936873 | MS.gene21133:CDS |
| GAACAGCTCATCATTGAAGG+AGG | 0.626679 | 1.4:+67937539 | MS.gene21133:intron |
| AACAGCTCATCATTGAAGGA+GGG | 0.627474 | 1.4:+67937540 | MS.gene21133:intron |
| GAAGAGGACGTTGCCAACCA+TGG | 0.631280 | 1.4:-67935468 | None:intergenic |
| GATGACTATTACACATATGG+TGG | 0.631412 | 1.4:-67937663 | None:intergenic |
| AGAGACACTATGAGACGCCA+TGG | 0.633131 | 1.4:+67935451 | None:intergenic |
| TGAACCATCCCCAAGATCGT+AGG | 0.633327 | 1.4:+67938797 | MS.gene21133:CDS |
| TGTGACAGTTTGTAGGCATG+GGG | 0.633700 | 1.4:+67935596 | MS.gene21133:intron |
| TCTCAGCAGTTCGGTTTCCG+AGG | 0.633761 | 1.4:-67935666 | None:intergenic |
| CTTATAGTTCAGCTGCATTG+GGG | 0.635397 | 1.4:+67937805 | MS.gene21133:CDS |
| ACTTGCAGCTGAGAAAGCAA+GGG | 0.638549 | 1.4:+67938425 | MS.gene21133:CDS |
| TCAACTTTACGAGTTTCCAA+GGG | 0.643170 | 1.4:-67938386 | None:intergenic |
| GGGGATTTATAGTTTCCTGG+TGG | 0.645721 | 1.4:+67935615 | MS.gene21133:CDS |
| TACCATGAAGGAAAATATGG+AGG | 0.650461 | 1.4:-67935698 | None:intergenic |
| GGTTTCCGAGGAAGAGTCCG+AGG | 0.657144 | 1.4:-67935654 | None:intergenic |
| TCGTGCGAGAAAGACCAATG+AGG | 0.674025 | 1.4:+67938454 | MS.gene21133:CDS |
| TCAATCTTGATAGACAACCT+AGG | 0.679060 | 1.4:-67938306 | None:intergenic |
| AGGTGCTTTGTGGATAAGAG+GGG | 0.684044 | 1.4:+67937584 | MS.gene21133:CDS |
| CTTCCATTGGAGACAAAACG+CGG | 0.706884 | 1.4:+67938498 | MS.gene21133:CDS |
| ATGCTGCTAGAGAATACCGA+TGG | 0.739752 | 1.4:-67938651 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTGATATTTTTTAATTTA+AGG | + | chr1.4:67936573-67936592 | MS.gene21133:intron | 10.0% |
| !! | AACTAAAATGAAAAATAGAA+AGG | - | chr1.4:67935518-67935537 | None:intergenic | 15.0% |
| !! | AAGATAATTTAAGCAAAAAA+GGG | - | chr1.4:67936354-67936373 | None:intergenic | 15.0% |
| !! | CCTTTATAAAGTTTAAAAAA+TGG | + | chr1.4:67936543-67936562 | MS.gene21133:intron | 15.0% |
| !!! | CCATTTTTTAAACTTTATAA+AGG | - | chr1.4:67936546-67936565 | None:intergenic | 15.0% |
| !!! | TTACTAAAGAAATATTTTGA+TGG | - | chr1.4:67936452-67936471 | None:intergenic | 15.0% |
| !!! | TTTTTTGCTTAAATTATCTT+CGG | + | chr1.4:67936354-67936373 | MS.gene21133:intron | 15.0% |
| !! | AAAATGCTTATTTACTAGTT+TGG | - | chr1.4:67936405-67936424 | None:intergenic | 20.0% |
| !! | AATGAATTCAATTTAGGTAA+CGG | + | chr1.4:67935984-67936003 | MS.gene21133:intron | 20.0% |
| !! | AGATAATTTAAGCAAAAAAG+GGG | - | chr1.4:67936353-67936372 | None:intergenic | 20.0% |
| !! | CAGAATTAATGTTAAATAGA+AGG | - | chr1.4:67937733-67937752 | None:intergenic | 20.0% |
| !! | GAAGATAATTTAAGCAAAAA+AGG | - | chr1.4:67936355-67936374 | None:intergenic | 20.0% |
| !! | GTCAATATTATATCGTTTAT+CGG | - | chr1.4:67936486-67936505 | None:intergenic | 20.0% |
| !!! | TATTGACTTAAATAGTCTTT+CGG | + | chr1.4:67936499-67936518 | MS.gene21133:intron | 20.0% |
| !!! | TGTTTGATTTGTTTCATAAA+GGG | + | chr1.4:67938040-67938059 | MS.gene21133:intron | 20.0% |
| !!! | TTGTTTGATTTGTTTCATAA+AGG | + | chr1.4:67938039-67938058 | MS.gene21133:intron | 20.0% |
| !!! | TTTTTTTTTAATCTTAAGCG+TGG | + | chr1.4:67937126-67937145 | MS.gene21133:intron | 20.0% |
| ! | AAGTAACATTAATGCTTCAT+TGG | + | chr1.4:67936122-67936141 | MS.gene21133:intron | 25.0% |
| ! | AATTACCATGAAGGAAAATA+TGG | - | chr1.4:67935704-67935723 | None:intergenic | 25.0% |
| ! | ACGAATGTGGAAAAAAATAT+TGG | + | chr1.4:67938528-67938547 | MS.gene21133:CDS | 25.0% |
| ! | CTTAACTATGGATTCATTAT+TGG | + | chr1.4:67936857-67936876 | MS.gene21133:CDS | 25.0% |
| ! | CTTTCATAACAAATGGAAAT+GGG | - | chr1.4:67936994-67937013 | None:intergenic | 25.0% |
| ! | GAAAAAAATATTGGCAATGA+GGG | + | chr1.4:67938537-67938556 | MS.gene21133:CDS | 25.0% |
| ! | GAATAGATAAATTACCATGA+AGG | - | chr1.4:67935713-67935732 | None:intergenic | 25.0% |
| ! | GCAATGAATGAATTCAATTT+AGG | + | chr1.4:67935978-67935997 | MS.gene21133:intron | 25.0% |
| ! | TCATCATCTTTCATAACAAA+TGG | - | chr1.4:67937001-67937020 | None:intergenic | 25.0% |
| ! | TCTTTCATAACAAATGGAAA+TGG | - | chr1.4:67936995-67937014 | None:intergenic | 25.0% |
| !!! | ATAATTTTGTTGTTTTGCAC+AGG | + | chr1.4:67936727-67936746 | MS.gene21133:intron | 25.0% |
| !!! | CTAAAGAAATATTTTGATGG+AGG | - | chr1.4:67936449-67936468 | None:intergenic | 25.0% |
| !!! | GTTTGATTTGTTTCATAAAG+GGG | + | chr1.4:67938041-67938060 | MS.gene21133:intron | 25.0% |
| AAAATCCTTGACATTAGTGT+TGG | - | chr1.4:67938187-67938206 | None:intergenic | 30.0% | |
| AACTTCATGTATCACCATTA+AGG | + | chr1.4:67938592-67938611 | MS.gene21133:CDS | 30.0% | |
| AATAGAAGGTTCAAAAGTCA+AGG | - | chr1.4:67937719-67937738 | None:intergenic | 30.0% | |
| AATGAGAACTAACCATTAAC+AGG | - | chr1.4:67937423-67937442 | None:intergenic | 30.0% | |
| AATTGTTATCAATGTGTGTC+TGG | + | chr1.4:67936669-67936688 | MS.gene21133:intron | 30.0% | |
| ACTCTGTTTATATGTGAATC+AGG | + | chr1.4:67937174-67937193 | MS.gene21133:intron | 30.0% | |
| AGAAGAAGAAAAAAGCCAAA+AGG | + | chr1.4:67936819-67936838 | MS.gene21133:CDS | 30.0% | |
| AGTGGTTGAATAACTGTATT+GGG | + | chr1.4:67937356-67937375 | MS.gene21133:intron | 30.0% | |
| ATAGAAGGTTCAAAAGTCAA+GGG | - | chr1.4:67937718-67937737 | None:intergenic | 30.0% | |
| ATAGTCATCTGAATTGTTTC+TGG | + | chr1.4:67937677-67937696 | MS.gene21133:intron | 30.0% | |
| ATGAATCCATAGTTAAGCTT+AGG | - | chr1.4:67936854-67936873 | None:intergenic | 30.0% | |
| ATTCATTATTGGTCAGATTG+TGG | + | chr1.4:67936868-67936887 | MS.gene21133:CDS | 30.0% | |
| ATTGAATTCATTCATTGCAC+TGG | - | chr1.4:67935976-67935995 | None:intergenic | 30.0% | |
| GACTGAATTGATATTTCTCA+AGG | + | chr1.4:67936596-67936615 | MS.gene21133:intron | 30.0% | |
| GGAAAAAAATATTGGCAATG+AGG | + | chr1.4:67938536-67938555 | MS.gene21133:CDS | 30.0% | |
| TAAACATGAGATTAAGCACA+AGG | + | chr1.4:67935816-67935835 | MS.gene21133:intron | 30.0% | |
| TCAGATGACTATTACACATA+TGG | - | chr1.4:67937669-67937688 | None:intergenic | 30.0% | |
| TGAAACGCGACATATAATTT+GGG | + | chr1.4:67936148-67936167 | MS.gene21133:intron | 30.0% | |
| TTGAAAATGTGACAGTTTGT+AGG | + | chr1.4:67935589-67935608 | MS.gene21133:intron | 30.0% | |
| TTGAAACGCGACATATAATT+TGG | + | chr1.4:67936147-67936166 | MS.gene21133:intron | 30.0% | |
| TTGCTTAAATTATCTTCGGT+CGG | + | chr1.4:67936358-67936377 | MS.gene21133:intron | 30.0% | |
| TTTCTTCTTCTTCTTGAAAC+TGG | - | chr1.4:67936810-67936829 | None:intergenic | 30.0% | |
| ! | AACACCTTTTATAGCAAAAG+GGG | + | chr1.4:67938569-67938588 | MS.gene21133:CDS | 30.0% |
| ! | ATCAACTGTTTTCAGTTTCA+AGG | + | chr1.4:67936303-67936322 | MS.gene21133:intron | 30.0% |
| ! | ATGCTTATTTACTAGTTTGG+AGG | - | chr1.4:67936402-67936421 | None:intergenic | 30.0% |
| ! | ATGTCAAGGATTTTATGCAA+AGG | + | chr1.4:67938193-67938212 | MS.gene21133:CDS | 30.0% |
| ! | CAACACCTTTTATAGCAAAA+GGG | + | chr1.4:67938568-67938587 | MS.gene21133:CDS | 30.0% |
| ! | TAGTCATCTGAATTGTTTCT+GGG | + | chr1.4:67937678-67937697 | MS.gene21133:intron | 30.0% |
| ! | TCAACACCTTTTATAGCAAA+AGG | + | chr1.4:67938567-67938586 | MS.gene21133:CDS | 30.0% |
| ! | TCCAAAGCGACATATATTTT+GGG | + | chr1.4:67936184-67936203 | MS.gene21133:intron | 30.0% |
| ! | TGGTTTGAGTCAATTTTCAT+AGG | - | chr1.4:67935939-67935958 | None:intergenic | 30.0% |
| ! | TTCCAAAGCGACATATATTT+TGG | + | chr1.4:67936183-67936202 | MS.gene21133:intron | 30.0% |
| !! | AACCTTTTTGTGTTGATCAA+AGG | - | chr1.4:67938351-67938370 | None:intergenic | 30.0% |
| !! | AATTTAGGTAACGGAAATGA+GGG | + | chr1.4:67935993-67936012 | MS.gene21133:intron | 30.0% |
| !! | ACCTTTTTGTGTTGATCAAA+GGG | - | chr1.4:67938350-67938369 | None:intergenic | 30.0% |
| !! | CAGTTATGTTTTTGTTTGTG+AGG | + | chr1.4:67936756-67936775 | MS.gene21133:CDS | 30.0% |
| !! | GATGATGTTTTTACCTGTAA+AGG | - | chr1.4:67935496-67935515 | None:intergenic | 30.0% |
| !!! | CTGCTTCTATATTTGTTTTG+TGG | - | chr1.4:67938687-67938706 | None:intergenic | 30.0% |
| !!! | TTTGGAGGCTTTTTCAAAAT+AGG | - | chr1.4:67936387-67936406 | None:intergenic | 30.0% |
| !!! | TTTTCTTCTCTTGTTTTCAG+TGG | + | chr1.4:67937338-67937357 | MS.gene21133:intron | 30.0% |
| !!! | TTTTTTTCCACATTCGTCAA+TGG | - | chr1.4:67938525-67938544 | None:intergenic | 30.0% |
| AAAAGCCAACACTAATGTCA+AGG | + | chr1.4:67938179-67938198 | MS.gene21133:CDS | 35.0% | |
| AAACACAGTGTACCTTTGAT+CGG | - | chr1.4:67935903-67935922 | None:intergenic | 35.0% | |
| AATATTGGCAATGAGGGATT+TGG | + | chr1.4:67938543-67938562 | MS.gene21133:CDS | 35.0% | |
| AGAACTGCACAGAAAATCAA+AGG | - | chr1.4:67938002-67938021 | None:intergenic | 35.0% | |
| AGAGAACTACCTTTCGTATT+AGG | - | chr1.4:67937854-67937873 | None:intergenic | 35.0% | |
| AGCTTGAAACACATATTTCC+AGG | + | chr1.4:67938739-67938758 | MS.gene21133:CDS | 35.0% | |
| ATATTGGCAATGAGGGATTT+GGG | + | chr1.4:67938544-67938563 | MS.gene21133:CDS | 35.0% | |
| ATCAAATGACTCCAATTCCA+TGG | - | chr1.4:67938113-67938132 | None:intergenic | 35.0% | |
| CACTGGATTGTACTTTGAAT+TGG | - | chr1.4:67935959-67935978 | None:intergenic | 35.0% | |
| CAGTGGTTGAATAACTGTAT+TGG | + | chr1.4:67937355-67937374 | MS.gene21133:intron | 35.0% | |
| CATTGCCAGAATATAGTCAT+AGG | - | chr1.4:67938074-67938093 | None:intergenic | 35.0% | |
| CTGCAATTGCGATATTTATC+AGG | + | chr1.4:67937564-67937583 | MS.gene21133:CDS | 35.0% | |
| GAATAGAAAAGGAGCTTCAT+AGG | + | chr1.4:67937606-67937625 | MS.gene21133:CDS | 35.0% | |
| GATATTTATCAGGTGCTTTG+TGG | + | chr1.4:67937574-67937593 | MS.gene21133:CDS | 35.0% | |
| GATGACTATTACACATATGG+TGG | - | chr1.4:67937666-67937685 | None:intergenic | 35.0% | |
| GCAATTCCTAAGCTTAACTA+TGG | + | chr1.4:67936845-67936864 | MS.gene21133:CDS | 35.0% | |
| GGAGGAACTAAATTGATTAC+AGG | - | chr1.4:67936431-67936450 | None:intergenic | 35.0% | |
| GTAAATTCGAACTCTTCTTC+TGG | - | chr1.4:67936331-67936350 | None:intergenic | 35.0% | |
| TACCATGAAGGAAAATATGG+AGG | - | chr1.4:67935701-67935720 | None:intergenic | 35.0% | |
| TATACTATCAAGCACACACT+CGG | - | chr1.4:67936698-67936717 | None:intergenic | 35.0% | |
| TCAAAACAAGCTTCTCTGTA+AGG | - | chr1.4:67938272-67938291 | None:intergenic | 35.0% | |
| TCAACTTTACGAGTTTCCAA+GGG | - | chr1.4:67938389-67938408 | None:intergenic | 35.0% | |
| TCAATCTTGATAGACAACCT+AGG | - | chr1.4:67938309-67938328 | None:intergenic | 35.0% | |
| TGTTCAGTTATCAGCAAAGA+TGG | + | chr1.4:67938771-67938790 | MS.gene21133:CDS | 35.0% | |
| TTAGTGTTATCTCAGCAGTT+CGG | - | chr1.4:67935678-67935697 | None:intergenic | 35.0% | |
| TTCATTAAGACCTCTTCCAT+TGG | + | chr1.4:67938485-67938504 | MS.gene21133:CDS | 35.0% | |
| TTTACCTGTAAAGGATGAAG+AGG | - | chr1.4:67935487-67935506 | None:intergenic | 35.0% | |
| TTTGTTTCATAAAGGGGATG+AGG | + | chr1.4:67938047-67938066 | MS.gene21133:intron | 35.0% | |
| ! | AACCTCCATATTTTCCTTCA+TGG | + | chr1.4:67935696-67935715 | MS.gene21133:CDS | 35.0% |
| ! | AAGGATTTTATGCAAAGGAC+AGG | + | chr1.4:67938198-67938217 | MS.gene21133:CDS | 35.0% |
| ! | AGCATCTTAAGTTGTTATGC+TGG | - | chr1.4:67936266-67936285 | None:intergenic | 35.0% |
| ! | ATCTGTTACTGTTAGGCTTT+TGG | + | chr1.4:67937271-67937290 | MS.gene21133:intron | 35.0% |
| ! | CTTAGGAATTGCATTCCTTT+TGG | - | chr1.4:67936837-67936856 | None:intergenic | 35.0% |
| ! | CTTTTTGTAGAGTTTCCAAG+AGG | + | chr1.4:67937632-67937651 | MS.gene21133:CDS | 35.0% |
| ! | GAAACTGAAAACAGTTGATG+CGG | - | chr1.4:67936302-67936321 | None:intergenic | 35.0% |
| ! | GATGATTTTCGTCCTGTTAA+TGG | + | chr1.4:67937408-67937427 | MS.gene21133:CDS | 35.0% |
| ! | GTGTGTTTCTATACTTTCCT+CGG | + | chr1.4:67935637-67935656 | MS.gene21133:CDS | 35.0% |
| ! | TAAGGTTTGAGACAGAATGA+AGG | - | chr1.4:67938254-67938273 | None:intergenic | 35.0% |
| ! | TCCCAAAATATATGTCGCTT+TGG | - | chr1.4:67936188-67936207 | None:intergenic | 35.0% |
| ! | TTGCACACTTTGTGATTTTG+AGG | + | chr1.4:67937063-67937082 | MS.gene21133:CDS | 35.0% |
| !! | AAGCGACATATATTTTGGGA+CGG | + | chr1.4:67936188-67936207 | MS.gene21133:intron | 35.0% |
| !! | AAGTTGTTATGCTGGTTTAG+AGG | - | chr1.4:67936258-67936277 | None:intergenic | 35.0% |
| !! | AGTTCCCCTTTTGCTATAAA+AGG | - | chr1.4:67938576-67938595 | None:intergenic | 35.0% |
| !! | AGTTGTTATGCTGGTTTAGA+GGG | - | chr1.4:67936257-67936276 | None:intergenic | 35.0% |
| !! | ATTTAGGTAACGGAAATGAG+GGG | + | chr1.4:67935994-67936013 | MS.gene21133:intron | 35.0% |
| !! | CAATTTAGGTAACGGAAATG+AGG | + | chr1.4:67935992-67936011 | MS.gene21133:intron | 35.0% |
| !! | CCTTTTTGTGTTGATCAAAG+GGG | - | chr1.4:67938349-67938368 | None:intergenic | 35.0% |
| !! | GTTTTTGTTTGTGAGGTGTA+CGG | + | chr1.4:67936763-67936782 | MS.gene21133:CDS | 35.0% |
| !!! | AGTTTTGACTTGAAGTTAGC+AGG | + | chr1.4:67938705-67938724 | MS.gene21133:CDS | 35.0% |
| AACAGCTCATCATTGAAGGA+GGG | + | chr1.4:67937540-67937559 | MS.gene21133:intron | 40.0% | |
| AAGTATAGAAACACACCACC+AGG | - | chr1.4:67935633-67935652 | None:intergenic | 40.0% | |
| AATGTGACAGTTTGTAGGCA+TGG | + | chr1.4:67935594-67935613 | MS.gene21133:intron | 40.0% | |
| AATGTTACAGCACCAATAGC+AGG | - | chr1.4:67936086-67936105 | None:intergenic | 40.0% | |
| ACAAATGGAAATGGGAGAAG+AGG | - | chr1.4:67936986-67937005 | None:intergenic | 40.0% | |
| ACTTGTAATCGTTGCGTTGA+AGG | + | chr1.4:67937223-67937242 | MS.gene21133:CDS | 40.0% | |
| AGAGAATGAAGCCATGGAAT+TGG | + | chr1.4:67938099-67938118 | MS.gene21133:CDS | 40.0% | |
| AGCTTATAGTTCAGCTGCAT+TGG | + | chr1.4:67937803-67937822 | MS.gene21133:CDS | 40.0% | |
| ATCTGTGCTAAACCGATCAA+AGG | + | chr1.4:67935888-67935907 | MS.gene21133:intron | 40.0% | |
| ATGTGACAGTTTGTAGGCAT+GGG | + | chr1.4:67935595-67935614 | MS.gene21133:intron | 40.0% | |
| ATGTTACAGCACCAATAGCA+GGG | - | chr1.4:67936085-67936104 | None:intergenic | 40.0% | |
| CAATGCTGTCATCTGATGAA+AGG | - | chr1.4:67938144-67938163 | None:intergenic | 40.0% | |
| CATGGGGATTTATAGTTTCC+TGG | + | chr1.4:67935612-67935631 | MS.gene21133:CDS | 40.0% | |
| CCCCTTTGATCAACACAAAA+AGG | + | chr1.4:67938346-67938365 | MS.gene21133:CDS | 40.0% | |
| CCTGCAGAAAATCTTCTTCT+TGG | - | chr1.4:67938627-67938646 | None:intergenic | 40.0% | |
| CTTATAGTTCAGCTGCATTG+GGG | + | chr1.4:67937805-67937824 | MS.gene21133:CDS | 40.0% | |
| CTTGGACTTGAAAGCCTTAA+TGG | - | chr1.4:67938609-67938628 | None:intergenic | 40.0% | |
| CTTGTAATCGTTGCGTTGAA+GGG | + | chr1.4:67937224-67937243 | MS.gene21133:CDS | 40.0% | |
| GAGGACCTATGACTATATTC+TGG | + | chr1.4:67938066-67938085 | MS.gene21133:CDS | 40.0% | |
| GCTTATAGTTCAGCTGCATT+GGG | + | chr1.4:67937804-67937823 | MS.gene21133:CDS | 40.0% | |
| GGATAAGAGGGGAATAGAAA+AGG | + | chr1.4:67937595-67937614 | MS.gene21133:CDS | 40.0% | |
| GGTAGTTCTCTTTCTTGCTT+TGG | + | chr1.4:67937863-67937882 | MS.gene21133:intron | 40.0% | |
| GGTCAGTATCTGTTACTGTT+AGG | + | chr1.4:67937264-67937283 | MS.gene21133:intron | 40.0% | |
| GTCAACTTTACGAGTTTCCA+AGG | - | chr1.4:67938390-67938409 | None:intergenic | 40.0% | |
| GTTCACATAACACATGGTGT+TGG | - | chr1.4:67937523-67937542 | None:intergenic | 40.0% | |
| TCACGTTCTCCTAATACGAA+AGG | + | chr1.4:67937842-67937861 | MS.gene21133:CDS | 40.0% | |
| TGAAACACATATTTCCAGGC+AGG | + | chr1.4:67938743-67938762 | MS.gene21133:CDS | 40.0% | |
| TGAACTTCATGAAATGCTGC+AGG | + | chr1.4:67937761-67937780 | MS.gene21133:intron | 40.0% | |
| TGAGCTGTTCACATAACACA+TGG | - | chr1.4:67937529-67937548 | None:intergenic | 40.0% | |
| TGTGAACAGCTCATCATTGA+AGG | + | chr1.4:67937536-67937555 | MS.gene21133:intron | 40.0% | |
| TTATTGGTCAGATTGTGGTG+AGG | + | chr1.4:67936873-67936892 | MS.gene21133:CDS | 40.0% | |
| TTCACGTAAGCATTAACCCT+TGG | + | chr1.4:67938370-67938389 | MS.gene21133:CDS | 40.0% | |
| ! | AGATTGTGGTGAGGTTTTTC+AGG | + | chr1.4:67936882-67936901 | MS.gene21133:CDS | 40.0% |
| ! | CCAAGAAGAAGATTTTCTGC+AGG | + | chr1.4:67938624-67938643 | MS.gene21133:CDS | 40.0% |
| ! | GACAGAATGAAGGCATAAAG+CGG | - | chr1.4:67938244-67938263 | None:intergenic | 40.0% |
| ! | GATCAAAGGTACACTGTGTT+TGG | + | chr1.4:67935902-67935921 | MS.gene21133:intron | 40.0% |
| ! | TTTGTGTTGATCAAAGGGGA+AGG | - | chr1.4:67938345-67938364 | None:intergenic | 40.0% |
| !! | AAAGGAGCATTTCTGAGATG+GGG | - | chr1.4:67936062-67936081 | None:intergenic | 40.0% |
| !! | ACATGGTGTTGGAAACGTTT+TGG | - | chr1.4:67937512-67937531 | None:intergenic | 40.0% |
| !! | ATGTCGTCCTCTTTAAGATC+AGG | - | chr1.4:67937037-67937056 | None:intergenic | 40.0% |
| !! | GAAAGGAGCATTTCTGAGAT+GGG | - | chr1.4:67936063-67936082 | None:intergenic | 40.0% |
| !! | GTTGTTATGCTGGTTTAGAG+GGG | - | chr1.4:67936256-67936275 | None:intergenic | 40.0% |
| !! | TGCAAGTAGAGCTTTTTCTC+TGG | - | chr1.4:67938412-67938431 | None:intergenic | 40.0% |
| !! | TGTCGTCCTCTTTAAGATCA+GGG | - | chr1.4:67937036-67937055 | None:intergenic | 40.0% |
| !! | TTGAAACTGGTTCTGTCTGT+AGG | - | chr1.4:67936797-67936816 | None:intergenic | 40.0% |
| !! | TTTAGGTAACGGAAATGAGG+GGG | + | chr1.4:67935995-67936014 | MS.gene21133:intron | 40.0% |
| !!! | GACATATATTTTGGGACGGA+GGG | + | chr1.4:67936192-67936211 | MS.gene21133:intron | 40.0% |
| !!! | GACATTAGTGTTGGCTTTTC+AGG | - | chr1.4:67938178-67938197 | None:intergenic | 40.0% |
| AACAGATACTGACCCTGCAA+TGG | - | chr1.4:67937258-67937277 | None:intergenic | 45.0% | |
| AACTGAACATAGAACCTGCC+TGG | - | chr1.4:67938760-67938779 | None:intergenic | 45.0% | |
| AAGGGTTTGATCACCATTGC+AGG | + | chr1.4:67937242-67937261 | MS.gene21133:CDS | 45.0% | |
| AATGAACTGTGCTCCCTCAT+TGG | - | chr1.4:67938471-67938490 | None:intergenic | 45.0% | |
| AATGCTCCTTTCCCTGCTAT+TGG | + | chr1.4:67936071-67936090 | MS.gene21133:intron | 45.0% | |
| ACGTCCTCTTCATCCTTTAC+AGG | + | chr1.4:67935480-67935499 | MS.gene21133:CDS | 45.0% | |
| ACTTGCAGCTGAGAAAGCAA+GGG | + | chr1.4:67938425-67938444 | MS.gene21133:CDS | 45.0% | |
| ACTTGTGCACTCGTCTTCAA+CGG | - | chr1.4:67936959-67936978 | None:intergenic | 45.0% | |
| AGGGTTTGATCACCATTGCA+GGG | + | chr1.4:67937243-67937262 | MS.gene21133:CDS | 45.0% | |
| AGGTGCTTTGTGGATAAGAG+GGG | + | chr1.4:67937584-67937603 | MS.gene21133:CDS | 45.0% | |
| ATGCTGCTAGAGAATACCGA+TGG | - | chr1.4:67938654-67938673 | None:intergenic | 45.0% | |
| CAGGTGCTTTGTGGATAAGA+GGG | + | chr1.4:67937583-67937602 | MS.gene21133:CDS | 45.0% | |
| CTGCACAGAAAATCAAAGGC+TGG | - | chr1.4:67937998-67938017 | None:intergenic | 45.0% | |
| CTTCCATTGGAGACAAAACG+CGG | + | chr1.4:67938498-67938517 | MS.gene21133:CDS | 45.0% | |
| GAACAGCTCATCATTGAAGG+AGG | + | chr1.4:67937539-67937558 | MS.gene21133:intron | 45.0% | |
| GAAGTTAGCAGGTGTGTCTA+GGG | + | chr1.4:67938716-67938735 | MS.gene21133:CDS | 45.0% | |
| GAGAGAAGAGAATGAAGCCA+TGG | + | chr1.4:67938093-67938112 | MS.gene21133:CDS | 45.0% | |
| GGGGATTTATAGTTTCCTGG+TGG | + | chr1.4:67935615-67935634 | MS.gene21133:CDS | 45.0% | |
| GGGTGGAAAAGAAGTTGCTT+AGG | + | chr1.4:67936906-67936925 | MS.gene21133:CDS | 45.0% | |
| TACTTGCAGCTGAGAAAGCA+AGG | + | chr1.4:67938424-67938443 | MS.gene21133:CDS | 45.0% | |
| TCAGGTGCTTTGTGGATAAG+AGG | + | chr1.4:67937582-67937601 | MS.gene21133:CDS | 45.0% | |
| TGAAGTTAGCAGGTGTGTCT+AGG | + | chr1.4:67938715-67938734 | MS.gene21133:CDS | 45.0% | |
| TGTCGTCCCTGATCTTAAAG+AGG | + | chr1.4:67937027-67937046 | MS.gene21133:CDS | 45.0% | |
| TGTGACAGTTTGTAGGCATG+GGG | + | chr1.4:67935596-67935615 | MS.gene21133:intron | 45.0% | |
| ! | AATCAAAGGCTGGAGCACTT+TGG | - | chr1.4:67937988-67938007 | None:intergenic | 45.0% |
| ! | ACTGAAAACAGTTGATGCGG+TGG | - | chr1.4:67936299-67936318 | None:intergenic | 45.0% |
| ! | ATTTTCTGCAGGCACACCAT+CGG | + | chr1.4:67938635-67938654 | MS.gene21133:CDS | 45.0% |
| ! | CGTTTTGTCTCCAATGGAAG+AGG | - | chr1.4:67938498-67938517 | None:intergenic | 45.0% |
| ! | TGAGTTTTCAGAGCTCACCT+AGG | + | chr1.4:67938289-67938308 | MS.gene21133:intron | 45.0% |
| !! | AAGGAGCATTTCTGAGATGG+GGG | - | chr1.4:67936061-67936080 | None:intergenic | 45.0% |
| !! | GGAAAGGAGCATTTCTGAGA+TGG | - | chr1.4:67936064-67936083 | None:intergenic | 45.0% |
| !!! | CGACATATATTTTGGGACGG+AGG | + | chr1.4:67936191-67936210 | MS.gene21133:intron | 45.0% |
| !!! | TGTGGTGAGGTTTTTCAGGA+GGG | + | chr1.4:67936886-67936905 | MS.gene21133:CDS | 45.0% |
| !!! | TTGTGGTGAGGTTTTTCAGG+AGG | + | chr1.4:67936885-67936904 | MS.gene21133:CDS | 45.0% |
| !! | TTGAAAAAAAAAAAAAAATA+TGG | - | chr1.4:67935778-67935797 | None:intergenic | 5.0% |
| !!! | ATTATTATTTATTTTTGAAT+TGG | + | chr1.4:67935840-67935859 | MS.gene21133:intron | 5.0% |
| !!! | ATTGATATTTTTTAATTTAA+GGG | + | chr1.4:67936574-67936593 | MS.gene21133:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTCAAAAA+TGG | + | chr1.4:67935781-67935800 | MS.gene21133:intron | 5.0% |
| ACAGCACCAATAGCAGGGAA+AGG | - | chr1.4:67936080-67936099 | None:intergenic | 50.0% | |
| ACTTTCCTCGGACTCTTCCT+CGG | + | chr1.4:67935649-67935668 | MS.gene21133:CDS | 50.0% | |
| ATGGTGGCAAGAAGTCCTCT+TGG | - | chr1.4:67937650-67937669 | None:intergenic | 50.0% | |
| CACTCGTCTTCAACGGATCA+AGG | - | chr1.4:67936952-67936971 | None:intergenic | 50.0% | |
| CAGCTGAGAAAGCAAGGGAA+AGG | + | chr1.4:67938430-67938449 | MS.gene21133:CDS | 50.0% | |
| CGTGCGAGAAAGACCAATGA+GGG | + | chr1.4:67938455-67938474 | MS.gene21133:CDS | 50.0% | |
| GTTGAAGACGAGTGCACAAG+TGG | + | chr1.4:67936958-67936977 | MS.gene21133:CDS | 50.0% | |
| TCGTGCGAGAAAGACCAATG+AGG | + | chr1.4:67938454-67938473 | MS.gene21133:CDS | 50.0% | |
| ! | AACAGTTGATGCGGTGGCAT+TGG | - | chr1.4:67936293-67936312 | None:intergenic | 50.0% |
| ! | GCTGGTTTAGAGGGGTTATC+TGG | - | chr1.4:67936248-67936267 | None:intergenic | 50.0% |
| ACGCGGACCATTGACGAATG+TGG | + | chr1.4:67938515-67938534 | MS.gene21133:CDS | 55.0% | |
| GAAGAGGACGTTGCCAACCA+TGG | - | chr1.4:67935471-67935490 | None:intergenic | 55.0% | |
| TCTCAGCAGTTCGGTTTCCG+AGG | - | chr1.4:67935669-67935688 | None:intergenic | 55.0% | |
| ! | GGTCCGCGTTTTGTCTCCAA+TGG | - | chr1.4:67938504-67938523 | None:intergenic | 55.0% |
| !! | AGCATTTCTGAGATGGGGGC+TGG | - | chr1.4:67936057-67936076 | None:intergenic | 55.0% |
| !!! | GGTGAGGTTTTTCAGGAGGG+TGG | + | chr1.4:67936889-67936908 | MS.gene21133:CDS | 55.0% |
| GGTTTCCGAGGAAGAGTCCG+AGG | - | chr1.4:67935657-67935676 | None:intergenic | 60.0% | |
| ! | GGGGCTGGTGCAATGTAGCT+CGG | + | chr1.4:67936014-67936033 | MS.gene21133:intron | 60.0% |
| !! | GGTAACGGAAATGAGGGGGC+TGG | + | chr1.4:67935999-67936018 | MS.gene21133:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 67935460 | 67938818 | 67935460 | ID=MS.gene21133 |
| chr1.4 | mRNA | 67935460 | 67938818 | 67935460 | ID=MS.gene21133.t1;Parent=MS.gene21133 |
| chr1.4 | exon | 67935460 | 67935501 | 67935460 | ID=MS.gene21133.t1.exon1;Parent=MS.gene21133.t1 |
| chr1.4 | CDS | 67935460 | 67935501 | 67935460 | ID=cds.MS.gene21133.t1;Parent=MS.gene21133.t1 |
| chr1.4 | exon | 67935604 | 67935717 | 67935604 | ID=MS.gene21133.t1.exon2;Parent=MS.gene21133.t1 |
| chr1.4 | CDS | 67935604 | 67935717 | 67935604 | ID=cds.MS.gene21133.t1;Parent=MS.gene21133.t1 |
| chr1.4 | exon | 67936749 | 67937084 | 67936749 | ID=MS.gene21133.t1.exon3;Parent=MS.gene21133.t1 |
| chr1.4 | CDS | 67936749 | 67937084 | 67936749 | ID=cds.MS.gene21133.t1;Parent=MS.gene21133.t1 |
| chr1.4 | exon | 67937196 | 67937264 | 67937196 | ID=MS.gene21133.t1.exon4;Parent=MS.gene21133.t1 |
| chr1.4 | CDS | 67937196 | 67937264 | 67937196 | ID=cds.MS.gene21133.t1;Parent=MS.gene21133.t1 |
| chr1.4 | exon | 67937358 | 67937429 | 67937358 | ID=MS.gene21133.t1.exon5;Parent=MS.gene21133.t1 |
| chr1.4 | CDS | 67937358 | 67937429 | 67937358 | ID=cds.MS.gene21133.t1;Parent=MS.gene21133.t1 |
| chr1.4 | exon | 67937545 | 67937673 | 67937545 | ID=MS.gene21133.t1.exon6;Parent=MS.gene21133.t1 |
| chr1.4 | CDS | 67937545 | 67937673 | 67937545 | ID=cds.MS.gene21133.t1;Parent=MS.gene21133.t1 |
| chr1.4 | exon | 67937783 | 67937863 | 67937783 | ID=MS.gene21133.t1.exon7;Parent=MS.gene21133.t1 |
| chr1.4 | CDS | 67937783 | 67937863 | 67937783 | ID=cds.MS.gene21133.t1;Parent=MS.gene21133.t1 |
| chr1.4 | exon | 67938061 | 67938219 | 67938061 | ID=MS.gene21133.t1.exon8;Parent=MS.gene21133.t1 |
| chr1.4 | CDS | 67938061 | 67938219 | 67938061 | ID=cds.MS.gene21133.t1;Parent=MS.gene21133.t1 |
| chr1.4 | exon | 67938300 | 67938818 | 67938300 | ID=MS.gene21133.t1.exon9;Parent=MS.gene21133.t1 |
| chr1.4 | CDS | 67938300 | 67938818 | 67938300 | ID=cds.MS.gene21133.t1;Parent=MS.gene21133.t1 |
| Gene Sequence |
| Protein sequence |
