AlfalfaGEDB | MS.gene21204

M. sativa cultivar XinJiangDaYe / MS.gene21204

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21204.t1	XP_003611359.2	95.2	798	38	0	4	801	32	829	0.00E+00	1574.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21204.t1	Q7FAZ3	45.2	805	398	19	25	801	24	813	5.3e-190	666.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21204.t1	G7JXG0	95.2	798	38	0	4	801	3	800	0.0e+00	1574.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049283	MS.gene21204	0.841305	5.15E-58	-1.69E-46
MS.gene049499	MS.gene21204	0.801364	9.32E-49	-1.69E-46
MS.gene050414	MS.gene21204	0.818553	1.85E-52	-1.69E-46
MS.gene050646	MS.gene21204	0.807834	4.17E-50	-1.69E-46
MS.gene050945	MS.gene21204	0.80448	2.12E-49	-1.69E-46
MS.gene051043	MS.gene21204	0.81493	1.20E-51	-1.69E-46
MS.gene051275	MS.gene21204	0.8187	1.71E-52	-1.69E-46
MS.gene054892	MS.gene21204	0.822133	2.79E-53	-1.69E-46
MS.gene054893	MS.gene21204	0.825816	3.81E-54	-1.69E-46
MS.gene055150	MS.gene21204	0.817237	3.66E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene074164	MS.gene21204	PPI
MS.gene21204	MS.gene47070	PPI
MS.gene21204	MS.gene55432	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21204.t1	MTR_5g013130	95.238	798	38	0	4	801	3	800	0.0	1572
MS.gene21204.t1	MTR_5g013070	86.318	804	102	5	4	801	2	803	0.0	1452
MS.gene21204.t1	MTR_2g067980	48.106	792	375	15	24	800	260	1030	0.0	719
MS.gene21204.t1	MTR_8g011370	48.306	797	364	21	30	798	34	810	0.0	707
MS.gene21204.t1	MTR_2g067990	46.835	790	382	16	26	799	238	1005	0.0	694
MS.gene21204.t1	MTR_8g011410	47.655	789	363	21	30	788	34	802	0.0	686
MS.gene21204.t1	MTR_2g068650	44.444	792	347	18	25	800	30	744	0.0	635
MS.gene21204.t1	MTR_8g011440	42.738	840	385	24	17	801	31	829	0.0	600
MS.gene21204.t1	MTR_8g011440	39.295	369	199	10	35	397	825	1174	9.87e-69	247
MS.gene21204.t1	MTR_4g114270	40.708	791	399	27	40	796	53	807	1.10e-173	521

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21204.t1	AT5G24080	31.818	836	492	29	6	794	10	814	4.27e-111	359
MS.gene21204.t1	AT1G34300	31.382	803	453	28	33	800	35	774	3.08e-100	329
MS.gene21204.t1	AT4G00340	33.504	782	436	26	37	784	30	761	1.43e-98	325
MS.gene21204.t1	AT4G00340	32.988	773	431	25	37	784	30	740	5.86e-97	320
MS.gene21204.t1	AT5G24080	32.062	708	420	22	127	794	1	687	4.07e-96	316
MS.gene21204.t1	AT5G24080	32.062	708	420	22	127	794	1	687	4.07e-96	316
MS.gene21204.t1	AT2G19130	30.806	831	497	29	1	800	1	784	2.47e-90	303
MS.gene21204.t1	AT4G21390	29.216	842	509	26	8	799	12	816	2.33e-80	276
MS.gene21204.t1	AT5G35370	29.184	723	409	20	127	791	135	812	5.43e-80	275
MS.gene21204.t1	AT4G32300	46.557	305	152	5	500	799	483	781	3.63e-79	272

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Find 162 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGAGTTTCTCCTCT+TGG	0.437024	5.1:+6200841	MS.gene21204:CDS
AAAAGACTGCCTATTGCGAA+TGG	0.574550	5.1:+6200784	MS.gene21204:CDS
AAAATGGTGATGGTGGGTCA+GGG	0.549802	5.1:-6201911	None:intergenic
AAAGATCTCTGACTTTGGTT+TGG	0.396229	5.1:+6201494	MS.gene21204:CDS
AAAGTTGATGTTTACAGCTT+TGG	0.318268	5.1:+6201618	MS.gene21204:CDS
AACAAGGATGGACTATTATG+AGG	0.522416	5.1:+6200389	MS.gene21204:CDS
AACCTCGTACAAGCACCGAC+AGG	0.601870	5.1:+6199803	MS.gene21204:CDS
AAGACTGAGTTGAGAGCAAT+TGG	0.370989	5.1:+6201210	MS.gene21204:CDS
AAGAGATTGATTAGGCAAAA+GGG	0.517414	5.1:-6200005	None:intergenic
AAGTCAAGGAATCGAACTGA+AGG	0.590393	5.1:-6201934	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGATTGATTAGGCAAAA+GGG	-	chr5.1:6200008-6200027	None:intergenic	30.0%
AATCAATCTCTTGAATTAGG+TGG	+	chr5.1:6200016-6200035	MS.gene21204:CDS	30.0%
AATCATGTGTAGTTGAAGAA+AGG	-	chr5.1:6200867-6200886	None:intergenic	30.0%
ACCTTTGTAAACAATTCCAA+AGG	-	chr5.1:6201109-6201128	None:intergenic	30.0%
ACTCATAGATGAGTACTTTA+CGG	+	chr5.1:6201470-6201489	MS.gene21204:CDS	30.0%
AGAGCAACACTTGATTATTA+TGG	+	chr5.1:6200325-6200344	MS.gene21204:CDS	30.0%
AGTCTTGCAAATATCTTGTT+TGG	+	chr5.1:6201324-6201343	MS.gene21204:CDS	30.0%
AGTGGATAAAGATAGCAATT+TGG	+	chr5.1:6201814-6201833	MS.gene21204:CDS	30.0%
ATATTCAATGAAATGGGTAG+TGG	+	chr5.1:6200439-6200458	MS.gene21204:CDS	30.0%
CCTAATCAATCTCTTGAATT+AGG	+	chr5.1:6200013-6200032	MS.gene21204:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	6199548	6201953	6199548	ID=MS.gene21204
chr5.1	mRNA	6199548	6201953	6199548	ID=MS.gene21204.t1;Parent=MS.gene21204
chr5.1	exon	6199548	6201953	6199548	ID=MS.gene21204.t1.exon1;Parent=MS.gene21204.t1
chr5.1	CDS	6199548	6201953	6199548	ID=cds.MS.gene21204.t1;Parent=MS.gene21204.t1

Gene Sequence

>MS.gene21204

ATGGCTTCTTCTTCTTCTTCTACCTTATTCATAATTTTCATTCTATTTCTTCAACTTGTGTTAGTCTTTGGAAACGTTACTCGAAGTTCTACACTATCCACCACAAACAACAATTCATGGCTGTCACCTTCTGGTGAATTTGCTTTCGGATTTCGACAACTTAGTATAACAACAAACCTCTTCATGCTTGCAATATGGTACAACAAAATACCTGAAAAAACCATTGTTTGGAGTGCTAAAAACACAAACAACAACAACCTCGTACAAGCACCGACAGGATCACAAGTTCAGCTAACATCAGGAGGACTCACGTTGACAACTCTACAAGGTGAATCCATTTGGACAGCACAACCAAACACTGCTGTTTCCTATGGAATCATGCATGACACTGGAAACTTTGTTCTTGTGAACAAAAATTCTACAATTGTTTGGGAAAGTTTCAAGTTTCCTACTGATACCCTTTTGCCTAATCAATCTCTTGAATTAGGTGGAAACATAACTTCTAGATTCTCTGAGACCAATTACACAAGTGGGAGGTTCCAACTTCATTTTCGTGATGATGATCACAATCTCATGTTAAGTCCACTTGCATGGCCTACTCAATTACGTTACAAATTTTACTATAGAATTGATGTTAATAACTCTGCATCTTCAAGTTTAGTTTTTGATGAATCAGGAGATATTTATGTTGAAACAAATAATAATGGTACTACTAGAATCAAACCTCCGGGTACACAATGGAAAAATTTAGATTTTGATCCTAAGTTGTATTATTATAGAGCAACACTTGATTATTATGGAGTTTTGACACAATATTCTCATCCAAGGGACACTAAAGCAAAACAAGGATGGACTATTATGAGGTATATTCCTGAAAACATTTGCATTGCAATATTCAATGAAATGGGTAGTGGAACTTGTGGCTATAATAGCTATTGTTCCATGGAAAATCAGAGACCTACTTGTAAATGTCCTTATGGTTATTCATTGATAGATCCAAGTAATCAATTTGGCGGGTGTCAACTCAATTTCACACTTGGTTGTGGAGCTGATAATGGTGACGGATTGAATGTGAAGCCAGAAGATTTATATGAGTTTACTGTTCTTAGAGATGTGGATTGGCCTTTATCAGATTATGAAAAGATGCAACCTTATTCTCAACAGGATTGTCAACAGACTTGTTTGCATGATTGCATGTGTGCGGTAGCAATTTTCAATAACAATACTTGTTGGAAGAAAAGACTGCCTATTGCGAATGGAAGAGCACAAAGTGGTGGACAATTGGTACTTGTGAAAACAAGAGTTTCTCCTCTTGGCCTTTCTTCAACTACACATGATTCGAAGAAAGACAACCGGGTTAAGCCGATTCTTCAAGGTTTACTTATTAGTTCCACTGTCTTCAATAGCATACTCTTAGCTGCGGTTGTTTTTATGACTTTGTTGAAGCCGAAAAGGGTTGTCCAAGCTGCACCTCTGGTGGAAACAAATTTATGTTCGTTTAGTTATGACGCATTAAAAGAAGCTACGTGGGGTTTTAGTGAAGAACTAGGTAGAGGGTCCTTTGGAATTGTTTACAAAGGTGAGTTAAAAGTAGGATCATCTTGCAATGTTGTTGCTGTTAAGAGATTGGATAGGTTAGCGGAGGATCGCGAGAAGGAATTTAAGACTGAGTTGAGAGCAATTGGAAAAACCTGCCACAAAAACTTGGTAAGGTTGGTTGGATTTTGTGATGAAGGAATGCATAGAATGTTGGTATATGAGTTCATGAGCAATGGTAGTCTTGCAAATATCTTGTTTGGAGAAACCAAACCCATTTGGAATCAAAGGGTTGGATTTTCTTTGGGGATTGCAAGAGGGTTGGTGTATTTACATGAAGAGTGTGACACTCCTATTATTCATTGTGACATAAAGCCTCAAAATATACTCATAGATGAGTACTTTACGGCAAAGATCTCTGACTTTGGTTTGGCCAAGTTGTTATTGGCTGATCAAAGTAGAACAAATACAATGATCCGAGGAACACGAGGATATGTGGCTCCTGAATGGTTCAAGAATGTTCCTGTGACAGCTAAAGTTGATGTTTACAGCTTTGGTTCCATGTTGTTGGAAATTGTTTGCTGCAGAAAAAGTGTGTTGCTGATGGAGTCAGGGGAGGAAGAAAAGGCAATTTTGACAGATTGGGCTTGTGATTGTTATATGGAAGGGAGAATAGATGCTTTGGTGGAAAATGATCAAGAGGCCTTGGATGACATTGACAGGTTAGAAAAGTGGATAAAGATAGCAATTTGGTGCATTCAAGAACATCCTGAAATGAGACCAACAATGAGGATGGTCATGCAAATGCTAGAAGGTGTGGTTCAAGTCCCTGACCCACCATCACCATTTTCCTTCAGTTCGATTCCTTGA

Protein sequence

>MS.gene21204.t1

MASSSSSTLFIIFILFLQLVLVFGNVTRSSTLSTTNNNSWLSPSGEFAFGFRQLSITTNLFMLAIWYNKIPEKTIVWSAKNTNNNNLVQAPTGSQVQLTSGGLTLTTLQGESIWTAQPNTAVSYGIMHDTGNFVLVNKNSTIVWESFKFPTDTLLPNQSLELGGNITSRFSETNYTSGRFQLHFRDDDHNLMLSPLAWPTQLRYKFYYRIDVNNSASSSLVFDESGDIYVETNNNGTTRIKPPGTQWKNLDFDPKLYYYRATLDYYGVLTQYSHPRDTKAKQGWTIMRYIPENICIAIFNEMGSGTCGYNSYCSMENQRPTCKCPYGYSLIDPSNQFGGCQLNFTLGCGADNGDGLNVKPEDLYEFTVLRDVDWPLSDYEKMQPYSQQDCQQTCLHDCMCAVAIFNNNTCWKKRLPIANGRAQSGGQLVLVKTRVSPLGLSSTTHDSKKDNRVKPILQGLLISSTVFNSILLAAVVFMTLLKPKRVVQAAPLVETNLCSFSYDALKEATWGFSEELGRGSFGIVYKGELKVGSSCNVVAVKRLDRLAEDREKEFKTELRAIGKTCHKNLVRLVGFCDEGMHRMLVYEFMSNGSLANILFGETKPIWNQRVGFSLGIARGLVYLHEECDTPIIHCDIKPQNILIDEYFTAKISDFGLAKLLLADQSRTNTMIRGTRGYVAPEWFKNVPVTAKVDVYSFGSMLLEIVCCRKSVLLMESGEEEKAILTDWACDCYMEGRIDALVENDQEALDDIDRLEKWIKIAIWCIQEHPEMRPTMRMVMQMLEGVVQVPDPPSPFSFSSIP