Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21517.t1 | XP_024630189.1 | 46.1 | 419 | 123 | 9 | 46 | 394 | 42 | 427 | 6.10E-61 | 245 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21517.t1 | A0A396J752 | 42.8 | 449 | 120 | 9 | 50 | 394 | 43 | 458 | 8.6e-57 | 230.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene21517 | 0.810479 | 1.13E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene21517 | 0.801478 | 8.84E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene21517 | 0.813459 | 2.53E-51 | -1.69E-46 |
| MS.gene051198 | MS.gene21517 | 0.80508 | 1.59E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene21517 | 0.813789 | 2.14E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene21517 | 0.825068 | 5.74E-54 | -1.69E-46 |
| MS.gene052037 | MS.gene21517 | 0.802493 | 5.46E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene21517 | 0.82812 | 1.07E-54 | -1.69E-46 |
| MS.gene052584 | MS.gene21517 | 0.80611 | 9.64E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene21517 | 0.802737 | 4.87E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene21517 | 0.810614 | 1.06E-50 | -1.69E-46 |
| MS.gene054775 | MS.gene21517 | 0.821571 | 3.76E-53 | -1.69E-46 |
| MS.gene056050 | MS.gene21517 | 0.832679 | 8.24E-56 | -1.69E-46 |
| MS.gene056366 | MS.gene21517 | 0.81046 | 1.14E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene21517 | 0.802468 | 5.53E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene21517 | 0.81062 | 1.05E-50 | -1.69E-46 |
| MS.gene059602 | MS.gene21517 | 0.801449 | 8.96E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene21517 | 0.808692 | 2.73E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21517.t1 | MTR_5g048720 | 79.433 | 141 | 27 | 1 | 263 | 403 | 20 | 158 | 1.38e-72 | 226 |
| MS.gene21517.t1 | MTR_8g040975 | 87.879 | 132 | 16 | 0 | 263 | 394 | 20 | 151 | 6.97e-71 | 224 |
| MS.gene21517.t1 | MTR_8g057120 | 80.000 | 100 | 20 | 0 | 300 | 399 | 156 | 255 | 2.88e-48 | 165 |
| MS.gene21517.t1 | MTR_4g088560 | 77.451 | 102 | 14 | 1 | 295 | 396 | 11 | 103 | 3.05e-34 | 125 |
| MS.gene21517.t1 | MTR_0232s0030 | 43.243 | 185 | 80 | 4 | 50 | 234 | 43 | 202 | 5.65e-33 | 123 |
| MS.gene21517.t1 | MTR_4g014530 | 84.058 | 69 | 9 | 1 | 328 | 394 | 1 | 69 | 9.48e-30 | 110 |
| MS.gene21517.t1 | MTR_4g013040 | 65.957 | 47 | 15 | 1 | 297 | 343 | 155 | 200 | 4.26e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 84 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATTATTAGCAAATTATT+TGG | 0.134917 | 5.1:+6290651 | MS.gene21517:CDS |
| TGCTTGCATTTGCATTAATA+AGG | 0.210712 | 5.1:-6291958 | None:intergenic |
| TGTTGGATATGTCCTTTCTA+TGG | 0.254791 | 5.1:+6291782 | MS.gene21517:CDS |
| CCCATCTTTCAACCATTATC+TGG | 0.261314 | 5.1:-6290702 | None:intergenic |
| ATTTAAAGATTTCCAGATAA+TGG | 0.292750 | 5.1:+6290690 | MS.gene21517:CDS |
| ACAAAATTCTAGAGACAAAA+AGG | 0.300243 | 5.1:+6291980 | MS.gene21517:CDS |
| TGAACGGAGGCGCTTCTTAT+TGG | 0.336558 | 5.1:-6290124 | None:intergenic |
| AGCAAATTATTTGGGCCAAT+TGG | 0.338084 | 5.1:+6290660 | MS.gene21517:CDS |
| GAAGCATTTGCCAATGTGTT+TGG | 0.345306 | 5.1:+6291750 | MS.gene21517:CDS |
| GTCATTATCCTGGTTCCATT+TGG | 0.356509 | 5.1:-6290589 | None:intergenic |
| CTTTAAATTGCCTTGCCAAT+TGG | 0.357012 | 5.1:-6290675 | None:intergenic |
| CGCTTCTTATTGGCAGCATA+TGG | 0.362911 | 5.1:-6290114 | None:intergenic |
| AAATTATTAGCAAATTATTT+GGG | 0.372951 | 5.1:+6290652 | MS.gene21517:CDS |
| TATGTCCTTTCTATGGGGCT+TGG | 0.401594 | 5.1:+6291789 | MS.gene21517:CDS |
| GTTGGATATGTCCTTTCTAT+GGG | 0.403615 | 5.1:+6291783 | MS.gene21517:CDS |
| TACTTGTAGGAATTGAGATA+TGG | 0.409851 | 5.1:+6291374 | MS.gene21517:intron |
| ACATCAACCTCCCAGTATCT+TGG | 0.412857 | 5.1:-6290402 | None:intergenic |
| ATAAGATGAGTGAGGGGAAA+AGG | 0.420824 | 5.1:-6289866 | None:intergenic |
| ATGGAATGATGTTCCTCAAC+AGG | 0.428050 | 5.1:+6290615 | MS.gene21517:CDS |
| TCCAGATAATGGTTGAAAGA+TGG | 0.435025 | 5.1:+6290701 | MS.gene21517:CDS |
| TTCATTGATAAATCTTCCCT+TGG | 0.440878 | 5.1:-6291444 | None:intergenic |
| GATTGATTCTCTTAAGAAGA+AGG | 0.441963 | 5.1:+6291902 | MS.gene21517:CDS |
| CCAGATAATGGTTGAAAGAT+GGG | 0.448547 | 5.1:+6290702 | MS.gene21517:CDS |
| GGGACCTACTTGTGGTGATC+TGG | 0.455099 | 5.1:-6289845 | None:intergenic |
| ATGCGGCGGGTCATATTTCA+AGG | 0.456814 | 5.1:+6290530 | MS.gene21517:CDS |
| GGTGTCTCATGTGTGGGTGG+TGG | 0.459191 | 5.1:-6290216 | None:intergenic |
| ATTGGCTGCCTCAAGAGCTC+CGG | 0.469208 | 5.1:-6290064 | None:intergenic |
| CGCCTCTGTTAGGTTGTGAA+TGG | 0.470205 | 5.1:+6290021 | MS.gene21517:intron |
| TTCAGAAGTTGATGTCTTGA+AGG | 0.473713 | 5.1:+6291926 | MS.gene21517:CDS |
| GATAGTCCGTACCTTGGCTC+TGG | 0.496615 | 5.1:+6290291 | MS.gene21517:CDS |
| TTGGCTGCCTCAAGAGCTCC+GGG | 0.520703 | 5.1:-6290063 | None:intergenic |
| TTGTTATTTGTTAGATGCGG+CGG | 0.522994 | 5.1:+6290516 | MS.gene21517:intron |
| GCAGATTGCCCCACCTGTTG+AGG | 0.525658 | 5.1:-6290628 | None:intergenic |
| TAAGATGAGTGAGGGGAAAA+GGG | 0.526912 | 5.1:-6289865 | None:intergenic |
| AGTGAAGGTGTCACATGTAT+AGG | 0.529342 | 5.1:-6290174 | None:intergenic |
| GTGCTTGAAGAATCTCCAAA+TGG | 0.542925 | 5.1:+6290574 | MS.gene21517:CDS |
| ATTTGCCAATGTGTTTGGAA+AGG | 0.548585 | 5.1:+6291755 | MS.gene21517:CDS |
| ATTATTTGGGCCAATTGGCA+AGG | 0.549492 | 5.1:+6290665 | MS.gene21517:CDS |
| TGTACAACCCGGAGCTCTTG+AGG | 0.549980 | 5.1:+6290056 | MS.gene21517:CDS |
| GATATGGTCGAGAATATAGC+AGG | 0.553453 | 5.1:+6291390 | MS.gene21517:CDS |
| TTATGCCAAGCCCCATAGAA+AGG | 0.559439 | 5.1:-6291794 | None:intergenic |
| TGTTATTTGTTAGATGCGGC+GGG | 0.560860 | 5.1:+6290517 | MS.gene21517:intron |
| ATTCCATCGAGTCATTATCC+TGG | 0.568967 | 5.1:-6290599 | None:intergenic |
| CGATGGAGGTGTCTCATGTG+TGG | 0.575152 | 5.1:-6290223 | None:intergenic |
| GATGGAGGTGTCTCATGTGT+GGG | 0.575465 | 5.1:-6290222 | None:intergenic |
| AAGAAGCGCCTCCGTTCACA+AGG | 0.583256 | 5.1:+6290129 | MS.gene21517:CDS |
| GATTTATCAATGAATATGCA+AGG | 0.585878 | 5.1:+6291453 | MS.gene21517:CDS |
| AAGAATCTCCAAATGGAACC+AGG | 0.590266 | 5.1:+6290581 | MS.gene21517:CDS |
| GAATGATGTTCCTCAACAGG+TGG | 0.591780 | 5.1:+6290618 | MS.gene21517:CDS |
| TTGGATATGTCCTTTCTATG+GGG | 0.593539 | 5.1:+6291784 | MS.gene21517:CDS |
| TCATCTCCAGAGCCAAGGTA+CGG | 0.595150 | 5.1:-6290297 | None:intergenic |
| CCTACTTGTGGTGATCTGGT+TGG | 0.606590 | 5.1:-6289841 | None:intergenic |
| TGGTGATCTGGTTGGCAGAG+TGG | 0.612507 | 5.1:-6289833 | None:intergenic |
| GAACCAGGATAATGACTCGA+TGG | 0.613463 | 5.1:+6290596 | MS.gene21517:CDS |
| AATGATGTTCCTCAACAGGT+GGG | 0.616020 | 5.1:+6290619 | MS.gene21517:CDS |
| ATGGTAAACCTTGTGAATTG+AGG | 0.617556 | 5.1:-6290095 | None:intergenic |
| GTCACATGTGTAGGCGATGG+AGG | 0.618381 | 5.1:-6290237 | None:intergenic |
| ATATGGTCGAGAATATAGCA+GGG | 0.620430 | 5.1:+6291391 | MS.gene21517:CDS |
| GCAGAGTGGTGTGAAAATGA+TGG | 0.620839 | 5.1:-6289819 | None:intergenic |
| TGTGAAGGTGTCACATGTGT+AGG | 0.626985 | 5.1:-6290246 | None:intergenic |
| TGTTTCGCATAAAGATGCCA+AGG | 0.628468 | 5.1:+6291427 | MS.gene21517:CDS |
| GGAGGTGTCTCATGTGTGGG+TGG | 0.634185 | 5.1:-6290219 | None:intergenic |
| CCAACCAGATCACCACAAGT+AGG | 0.636967 | 5.1:+6289841 | MS.gene21517:CDS |
| GGTGTCACATGTGTAGGCGA+TGG | 0.637531 | 5.1:-6290240 | None:intergenic |
| ACACATGATAGTCCGTACCT+TGG | 0.638575 | 5.1:+6290285 | MS.gene21517:CDS |
| ATGTTCCTTTCCAAACACAT+TGG | 0.639744 | 5.1:-6291760 | None:intergenic |
| GAGCGACTAGAGATTCGAGA+TGG | 0.640237 | 5.1:-6291819 | None:intergenic |
| CATCATCATCTCCAGAGCCA+AGG | 0.642384 | 5.1:-6290302 | None:intergenic |
| AAATCAAAGTTTGTACAACC+CGG | 0.645592 | 5.1:+6290045 | MS.gene21517:CDS |
| ATTAGCCTCGATGGAAGACG+AGG | 0.645771 | 5.1:-6291853 | None:intergenic |
| GGGGAAAAGGGACCTACTTG+TGG | 0.646461 | 5.1:-6289853 | None:intergenic |
| GTGTTTGGAAAGGAACATGT+TGG | 0.648051 | 5.1:+6291765 | MS.gene21517:CDS |
| ATTTATCAATGAATATGCAA+GGG | 0.649599 | 5.1:+6291454 | MS.gene21517:CDS |
| GTAACATGATCATGCAGTGA+AGG | 0.656002 | 5.1:-6290189 | None:intergenic |
| TATGGTCGAGAATATAGCAG+GGG | 0.665151 | 5.1:+6291392 | MS.gene21517:CDS |
| ATGATGTTCCTCAACAGGTG+GGG | 0.666694 | 5.1:+6290620 | MS.gene21517:CDS |
| GTTTCGCATAAAGATGCCAA+GGG | 0.678887 | 5.1:+6291428 | MS.gene21517:CDS |
| CTTGTCACATGTGTATGTGA+AGG | 0.684730 | 5.1:-6290261 | None:intergenic |
| GTGGTAAACCTTGTGAACGG+AGG | 0.698715 | 5.1:-6290137 | None:intergenic |
| TTCAAGGAGACATTTAACAG+TGG | 0.703478 | 5.1:+6290546 | MS.gene21517:CDS |
| ATTAGCCTCGTCTTCCATCG+AGG | 0.707505 | 5.1:+6291848 | MS.gene21517:CDS |
| AAAGAAACCAAGATACTGGG+AGG | 0.708954 | 5.1:+6290395 | MS.gene21517:CDS |
| CATGTGGTAAACCTTGTGAA+CGG | 0.710378 | 5.1:-6290140 | None:intergenic |
| ATAGGCTGTGAAGCTGCATG+TGG | 0.760597 | 5.1:-6290156 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATTAGCAAATTATTT+GGG | + | chr5.1:6290652-6290671 | MS.gene21517:CDS | 10.0% |
| !! | TAAATTATTAGCAAATTATT+TGG | + | chr5.1:6290651-6290670 | MS.gene21517:CDS | 10.0% |
| !! | GTAAAAACAAAAAAAAAAGT+TGG | - | chr5.1:6289960-6289979 | None:intergenic | 15.0% |
| !! | ATTTAAAGATTTCCAGATAA+TGG | + | chr5.1:6290690-6290709 | MS.gene21517:CDS | 20.0% |
| !! | ATTTATCAATGAATATGCAA+GGG | + | chr5.1:6291454-6291473 | MS.gene21517:CDS | 20.0% |
| !! | GTTTAAGAAACATTACAAAT+GGG | + | chr5.1:6290959-6290978 | MS.gene21517:intron | 20.0% |
| !! | TGTTTAAGAAACATTACAAA+TGG | + | chr5.1:6290958-6290977 | MS.gene21517:intron | 20.0% |
| !!! | AATGTCAAACATTTCATTTT+AGG | - | chr5.1:6291547-6291566 | None:intergenic | 20.0% |
| !!! | CTAGAGATAACATATTTTTA+TGG | - | chr5.1:6290903-6290922 | None:intergenic | 20.0% |
| !!! | CTGTTATTGATTGTTTTAAA+TGG | + | chr5.1:6290483-6290502 | MS.gene21517:intron | 20.0% |
| ! | ATAAAAAGAAACCAAGATAC+TGG | + | chr5.1:6290391-6290410 | MS.gene21517:CDS | 25.0% |
| ! | ATTATTGTCTCAATTAATGC+AGG | + | chr5.1:6291140-6291159 | MS.gene21517:intron | 25.0% |
| ! | GATTTATCAATGAATATGCA+AGG | + | chr5.1:6291453-6291472 | MS.gene21517:CDS | 25.0% |
| ! | TAAAAAGAAACCAAGATACT+GGG | + | chr5.1:6290392-6290411 | MS.gene21517:CDS | 25.0% |
| !! | ACAAAATTCTAGAGACAAAA+AGG | + | chr5.1:6291980-6291999 | MS.gene21517:CDS | 25.0% |
| !! | GTTTTATGATAGCAAAGTAA+AGG | + | chr5.1:6290756-6290775 | MS.gene21517:CDS | 25.0% |
| !!! | AAGATGTTTTTGCAATAGTT+TGG | - | chr5.1:6292015-6292034 | None:intergenic | 25.0% |
| !!! | ATGTTGTTATTTGTTAGATG+CGG | + | chr5.1:6290513-6290532 | MS.gene21517:intron | 25.0% |
| !!! | TTGTTTTTGTCAATTTTAGG+AGG | + | chr5.1:6291045-6291064 | MS.gene21517:intron | 25.0% |
| AAAAACATAAGATGAGTGAG+GGG | - | chr5.1:6289875-6289894 | None:intergenic | 30.0% | |
| AAATATGTTATCTCTAGCCT+TGG | + | chr5.1:6290906-6290925 | MS.gene21517:intron | 30.0% | |
| AAATCAAAGTTTGTACAACC+CGG | + | chr5.1:6290045-6290064 | MS.gene21517:CDS | 30.0% | |
| AATACAGATGCAGAATATTC+TGG | + | chr5.1:6292162-6292181 | MS.gene21517:intron | 30.0% | |
| AATCTAGTGTTCCTATTTGT+GGG | + | chr5.1:6290436-6290455 | MS.gene21517:intron | 30.0% | |
| ACGCACATTATAAGATTGTT+TGG | + | chr5.1:6291323-6291342 | MS.gene21517:intron | 30.0% | |
| CAAAAACATAAGATGAGTGA+GGG | - | chr5.1:6289876-6289895 | None:intergenic | 30.0% | |
| CACAAAATAATGAAAGAAGC+CGG | + | chr5.1:6291169-6291188 | MS.gene21517:intron | 30.0% | |
| CATTGTATTATTGCCTAAAG+AGG | + | chr5.1:6291569-6291588 | MS.gene21517:intron | 30.0% | |
| CTGCATTTGTATTTCCTATT+AGG | - | chr5.1:6292337-6292356 | None:intergenic | 30.0% | |
| TAATCTAGTGTTCCTATTTG+TGG | + | chr5.1:6290435-6290454 | MS.gene21517:intron | 30.0% | |
| TACTTGTAGGAATTGAGATA+TGG | + | chr5.1:6291374-6291393 | MS.gene21517:intron | 30.0% | |
| TATATATAATCGATCCTGAG+TGG | + | chr5.1:6292114-6292133 | MS.gene21517:intron | 30.0% | |
| TATCATATGTGCTTACTTGT+AGG | + | chr5.1:6291361-6291380 | MS.gene21517:intron | 30.0% | |
| TGCTTGCATTTGCATTAATA+AGG | - | chr5.1:6291961-6291980 | None:intergenic | 30.0% | |
| TTCAATGTTATGACCTCTTT+AGG | - | chr5.1:6291585-6291604 | None:intergenic | 30.0% | |
| TTCATTGATAAATCTTCCCT+TGG | - | chr5.1:6291447-6291466 | None:intergenic | 30.0% | |
| ! | GATTGATTCTCTTAAGAAGA+AGG | + | chr5.1:6291902-6291921 | MS.gene21517:CDS | 30.0% |
| ! | TTTTATTCACCCAGATCATT+GGG | + | chr5.1:6291022-6291041 | MS.gene21517:intron | 30.0% |
| ! | TTTTTGCACAATTGAAAACG+AGG | + | chr5.1:6291501-6291520 | MS.gene21517:intron | 30.0% |
| !! | AAGTTTGTTGTTGATGATGA+TGG | + | chr5.1:6290874-6290893 | MS.gene21517:intron | 30.0% |
| !! | GCTACTGATTTACAATATTC+TGG | + | chr5.1:6292265-6292284 | MS.gene21517:intron | 30.0% |
| !! | TTTTGTCAATTTTAGGAGGA+AGG | + | chr5.1:6291049-6291068 | MS.gene21517:intron | 30.0% |
| !!! | GCTGCTGATTTACAATATTT+TGG | + | chr5.1:6292299-6292318 | MS.gene21517:intron | 30.0% |
| !!! | GGGTTGTTTTTGTCAATTTT+AGG | + | chr5.1:6291042-6291061 | MS.gene21517:intron | 30.0% |
| ACAAAAACAACCCAATGATC+TGG | - | chr5.1:6291035-6291054 | None:intergenic | 35.0% | |
| AGCAAATTATTTGGGCCAAT+TGG | + | chr5.1:6290660-6290679 | MS.gene21517:CDS | 35.0% | |
| ATATGGTCGAGAATATAGCA+GGG | + | chr5.1:6291391-6291410 | MS.gene21517:CDS | 35.0% | |
| ATCTAGTGTTCCTATTTGTG+GGG | + | chr5.1:6290437-6290456 | MS.gene21517:intron | 35.0% | |
| ATGGTAAACCTTGTGAATTG+AGG | - | chr5.1:6290098-6290117 | None:intergenic | 35.0% | |
| ATGTTCCTTTCCAAACACAT+TGG | - | chr5.1:6291763-6291782 | None:intergenic | 35.0% | |
| ATTTGCCAATGTGTTTGGAA+AGG | + | chr5.1:6291755-6291774 | MS.gene21517:CDS | 35.0% | |
| CAAAAAACTCCTCATACACT+AGG | + | chr5.1:6291198-6291217 | MS.gene21517:intron | 35.0% | |
| CAAAAACAACCCAATGATCT+GGG | - | chr5.1:6291034-6291053 | None:intergenic | 35.0% | |
| CCAAAAACATAAGATGAGTG+AGG | - | chr5.1:6289877-6289896 | None:intergenic | 35.0% | |
| CTTTAAATTGCCTTGCCAAT+TGG | - | chr5.1:6290678-6290697 | None:intergenic | 35.0% | |
| GTAAATCAGTAGCAAGTGTA+AGG | - | chr5.1:6292258-6292277 | None:intergenic | 35.0% | |
| GTTATACAAAGACAAGTGCA+AGG | - | chr5.1:6292076-6292095 | None:intergenic | 35.0% | |
| GTTGGATATGTCCTTTCTAT+GGG | + | chr5.1:6291783-6291802 | MS.gene21517:CDS | 35.0% | |
| TAGTCTAATGTTTGAGGAGT+AGG | + | chr5.1:6289932-6289951 | MS.gene21517:intron | 35.0% | |
| TCATGAACTGTTGTATATGC+AGG | + | chr5.1:6291686-6291705 | MS.gene21517:intron | 35.0% | |
| TGATCTGGGTGAATAAAAGT+TGG | - | chr5.1:6291020-6291039 | None:intergenic | 35.0% | |
| TGTTGGATATGTCCTTTCTA+TGG | + | chr5.1:6291782-6291801 | MS.gene21517:CDS | 35.0% | |
| TTCAAGGAGACATTTAACAG+TGG | + | chr5.1:6290546-6290565 | MS.gene21517:CDS | 35.0% | |
| TTGGATATGTCCTTTCTATG+GGG | + | chr5.1:6291784-6291803 | MS.gene21517:CDS | 35.0% | |
| ! | ATGGGATGCTGCAATTTTAA+AGG | + | chr5.1:6290720-6290739 | MS.gene21517:CDS | 35.0% |
| ! | CCAGATAATGGTTGAAAGAT+GGG | + | chr5.1:6290702-6290721 | MS.gene21517:CDS | 35.0% |
| ! | CCTCACTCATCTTATGTTTT+TGG | + | chr5.1:6289874-6289893 | MS.gene21517:CDS | 35.0% |
| ! | CTTTTATTCACCCAGATCAT+TGG | + | chr5.1:6291021-6291040 | MS.gene21517:intron | 35.0% |
| ! | TCCAGATAATGGTTGAAAGA+TGG | + | chr5.1:6290701-6290720 | MS.gene21517:CDS | 35.0% |
| !! | GCTGCTGATTTACAATATTC+TGG | + | chr5.1:6292195-6292214 | MS.gene21517:intron | 35.0% |
| !! | TGAATTGAGGCGCTTTTTAT+TGG | - | chr5.1:6290085-6290104 | None:intergenic | 35.0% |
| !! | TTCAGAAGTTGATGTCTTGA+AGG | + | chr5.1:6291926-6291945 | MS.gene21517:CDS | 35.0% |
| !! | TTCATTTTAGGTGAGCTATG+AGG | - | chr5.1:6291535-6291554 | None:intergenic | 35.0% |
| !! | TTGTTATTTGTTAGATGCGG+CGG | + | chr5.1:6290516-6290535 | MS.gene21517:intron | 35.0% |
| !!! | ACTCATCTTATGTTTTTGGC+TGG | + | chr5.1:6289878-6289897 | MS.gene21517:CDS | 35.0% |
| !!! | GAGGAGTTTTTTGCATTTTC+CGG | - | chr5.1:6291191-6291210 | None:intergenic | 35.0% |
| !!! | GTGTGATTTTGATTCAAGTG+AGG | + | chr5.1:6289909-6289928 | MS.gene21517:CDS | 35.0% |
| AAAAACACAGCCCCACAAAT+AGG | - | chr5.1:6290450-6290469 | None:intergenic | 40.0% | |
| AAAGAAACCAAGATACTGGG+AGG | + | chr5.1:6290395-6290414 | MS.gene21517:CDS | 40.0% | |
| AAGAATCTCCAAATGGAACC+AGG | + | chr5.1:6290581-6290600 | MS.gene21517:CDS | 40.0% | |
| AATGATGTTCCTCAACAGGT+GGG | + | chr5.1:6290619-6290638 | MS.gene21517:CDS | 40.0% | |
| ATAAGATGAGTGAGGGGAAA+AGG | - | chr5.1:6289869-6289888 | None:intergenic | 40.0% | |
| ATGGAATGATGTTCCTCAAC+AGG | + | chr5.1:6290615-6290634 | MS.gene21517:CDS | 40.0% | |
| ATTATTTGGGCCAATTGGCA+AGG | + | chr5.1:6290665-6290684 | MS.gene21517:CDS | 40.0% | |
| ATTCCATCGAGTCATTATCC+TGG | - | chr5.1:6290602-6290621 | None:intergenic | 40.0% | |
| CAAATGGGAACTCACATTAG+AGG | + | chr5.1:6290974-6290993 | MS.gene21517:intron | 40.0% | |
| CATCCTTCCATTTCTTTCCA+AGG | - | chr5.1:6290926-6290945 | None:intergenic | 40.0% | |
| CATGTGGTAAACCTTGTGAA+CGG | - | chr5.1:6290143-6290162 | None:intergenic | 40.0% | |
| CCCATCTTTCAACCATTATC+TGG | - | chr5.1:6290705-6290724 | None:intergenic | 40.0% | |
| CTTGGAAAGAAATGGAAGGA+TGG | + | chr5.1:6290924-6290943 | MS.gene21517:intron | 40.0% | |
| CTTGTCACATGTGTATGTGA+AGG | - | chr5.1:6290264-6290283 | None:intergenic | 40.0% | |
| GATATGGTCGAGAATATAGC+AGG | + | chr5.1:6291390-6291409 | MS.gene21517:CDS | 40.0% | |
| GCGATCAGAAAAGATGAGTT+GGG | + | chr5.1:6291234-6291253 | MS.gene21517:intron | 40.0% | |
| GGCTGTTATTACTGCCTAAT+AGG | + | chr5.1:6292320-6292339 | MS.gene21517:intron | 40.0% | |
| GTAACATGATCATGCAGTGA+AGG | - | chr5.1:6290192-6290211 | None:intergenic | 40.0% | |
| GTCATTATCCTGGTTCCATT+TGG | - | chr5.1:6290592-6290611 | None:intergenic | 40.0% | |
| GTGAGGTAGTCTAATGTTTG+AGG | + | chr5.1:6289926-6289945 | MS.gene21517:intron | 40.0% | |
| GTGCTTGAAGAATCTCCAAA+TGG | + | chr5.1:6290574-6290593 | MS.gene21517:CDS | 40.0% | |
| GTGTTTGGAAAGGAACATGT+TGG | + | chr5.1:6291765-6291784 | MS.gene21517:CDS | 40.0% | |
| GTTTCGCATAAAGATGCCAA+GGG | + | chr5.1:6291428-6291447 | MS.gene21517:CDS | 40.0% | |
| TAAGATGAGTGAGGGGAAAA+GGG | - | chr5.1:6289868-6289887 | None:intergenic | 40.0% | |
| TATGGTCGAGAATATAGCAG+GGG | + | chr5.1:6291392-6291411 | MS.gene21517:CDS | 40.0% | |
| TCTGTGTATGCAATCTCATC+TGG | + | chr5.1:6291300-6291319 | MS.gene21517:intron | 40.0% | |
| TGCATCTGTATTTCCTACTC+AGG | - | chr5.1:6292154-6292173 | None:intergenic | 40.0% | |
| TGCGATCAGAAAAGATGAGT+TGG | + | chr5.1:6291233-6291252 | MS.gene21517:intron | 40.0% | |
| TGTTTCGCATAAAGATGCCA+AGG | + | chr5.1:6291427-6291446 | MS.gene21517:CDS | 40.0% | |
| TTCCATTCACAACCTAACAG+AGG | - | chr5.1:6290026-6290045 | None:intergenic | 40.0% | |
| ! | CAGAAAAGATGAGTTGGGTA+TGG | + | chr5.1:6291239-6291258 | MS.gene21517:intron | 40.0% |
| ! | GAAGCATTTGCCAATGTGTT+TGG | + | chr5.1:6291750-6291769 | MS.gene21517:CDS | 40.0% |
| ! | TAGCCTTGGAAAGAAATGGA+AGG | + | chr5.1:6290920-6290939 | MS.gene21517:intron | 40.0% |
| ! | TGTTATTTGTTAGATGCGGC+GGG | + | chr5.1:6290517-6290536 | MS.gene21517:intron | 40.0% |
| !! | AAAAAGCGCCTCAATTCACA+AGG | + | chr5.1:6290087-6290106 | MS.gene21517:CDS | 40.0% |
| !! | AGTGAAGGTGTCACATGTAT+AGG | - | chr5.1:6290177-6290196 | None:intergenic | 40.0% |
| !! | CATTTTCTCATTAGCCTCGA+TGG | - | chr5.1:6291865-6291884 | None:intergenic | 40.0% |
| !! | TCTCTAGCCTTGGAAAGAAA+TGG | + | chr5.1:6290916-6290935 | MS.gene21517:intron | 40.0% |
| !!! | GGCTGTGTTTTTTCTCTTGT+TGG | + | chr5.1:6290458-6290477 | MS.gene21517:intron | 40.0% |
| ACACATGATAGTCCGTACCT+TGG | + | chr5.1:6290285-6290304 | MS.gene21517:CDS | 45.0% | |
| ACATCAACCTCCCAGTATCT+TGG | - | chr5.1:6290405-6290424 | None:intergenic | 45.0% | |
| ATGATGTTCCTCAACAGGTG+GGG | + | chr5.1:6290620-6290639 | MS.gene21517:CDS | 45.0% | |
| CCTAAATCAACTGCCTGAGT+AGG | + | chr5.1:6292138-6292157 | MS.gene21517:intron | 45.0% | |
| CGCTTCTTATTGGCAGCATA+TGG | - | chr5.1:6290117-6290136 | None:intergenic | 45.0% | |
| GAACCAGGATAATGACTCGA+TGG | + | chr5.1:6290596-6290615 | MS.gene21517:CDS | 45.0% | |
| GAATGATGTTCCTCAACAGG+TGG | + | chr5.1:6290618-6290637 | MS.gene21517:CDS | 45.0% | |
| GAGTCAGTTCCTAGTGTATG+AGG | - | chr5.1:6291210-6291229 | None:intergenic | 45.0% | |
| GCAGAGTGGTGTGAAAATGA+TGG | - | chr5.1:6289822-6289841 | None:intergenic | 45.0% | |
| TATGTCCTTTCTATGGGGCT+TGG | + | chr5.1:6291789-6291808 | MS.gene21517:CDS | 45.0% | |
| TTATGCCAAGCCCCATAGAA+AGG | - | chr5.1:6291797-6291816 | None:intergenic | 45.0% | |
| ! | CAGTTGATTTAGGTCCACTC+AGG | - | chr5.1:6292131-6292150 | None:intergenic | 45.0% |
| ! | CCTACTCAGGCAGTTGATTT+AGG | - | chr5.1:6292141-6292160 | None:intergenic | 45.0% |
| !! | TGTGAAGGTGTCACATGTGT+AGG | - | chr5.1:6290249-6290268 | None:intergenic | 45.0% |
| ATAGGCTGTGAAGCTGCATG+TGG | - | chr5.1:6290159-6290178 | None:intergenic | 50.0% | |
| ATGCGGCGGGTCATATTTCA+AGG | + | chr5.1:6290530-6290549 | MS.gene21517:CDS | 50.0% | |
| CATCATCATCTCCAGAGCCA+AGG | - | chr5.1:6290305-6290324 | None:intergenic | 50.0% | |
| CCAACCAGATCACCACAAGT+AGG | + | chr5.1:6289841-6289860 | MS.gene21517:CDS | 50.0% | |
| CCTACTTGTGGTGATCTGGT+TGG | - | chr5.1:6289844-6289863 | None:intergenic | 50.0% | |
| GAGCGACTAGAGATTCGAGA+TGG | - | chr5.1:6291822-6291841 | None:intergenic | 50.0% | |
| GTGGTAAACCTTGTGAACGG+AGG | - | chr5.1:6290140-6290159 | None:intergenic | 50.0% | |
| TAGGAGGAAGGCTGAACAAG+TGG | + | chr5.1:6291061-6291080 | MS.gene21517:intron | 50.0% | |
| TCATCTCCAGAGCCAAGGTA+CGG | - | chr5.1:6290300-6290319 | None:intergenic | 50.0% | |
| ! | ATTAGCCTCGATGGAAGACG+AGG | - | chr5.1:6291856-6291875 | None:intergenic | 50.0% |
| ! | ATTAGCCTCGTCTTCCATCG+AGG | + | chr5.1:6291848-6291867 | MS.gene21517:CDS | 50.0% |
| ! | CGCCTCTGTTAGGTTGTGAA+TGG | + | chr5.1:6290021-6290040 | MS.gene21517:intron | 50.0% |
| ! | TAAACCGAAGCGCCTCTGTT+AGG | + | chr5.1:6290011-6290030 | MS.gene21517:intron | 50.0% |
| !! | ACAACCTAACAGAGGCGCTT+CGG | - | chr5.1:6290018-6290037 | None:intergenic | 50.0% |
| !! | GATGGAGGTGTCTCATGTGT+GGG | - | chr5.1:6290225-6290244 | None:intergenic | 50.0% |
| !! | TGAACGGAGGCGCTTCTTAT+TGG | - | chr5.1:6290127-6290146 | None:intergenic | 50.0% |
| ATTGGCTGCCTCAAGAGCTC+CGG | - | chr5.1:6290067-6290086 | None:intergenic | 55.0% | |
| GATAGTCCGTACCTTGGCTC+TGG | + | chr5.1:6290291-6290310 | MS.gene21517:CDS | 55.0% | |
| GGGACCTACTTGTGGTGATC+TGG | - | chr5.1:6289848-6289867 | None:intergenic | 55.0% | |
| GGGGAAAAGGGACCTACTTG+TGG | - | chr5.1:6289856-6289875 | None:intergenic | 55.0% | |
| GTCACATGTGTAGGCGATGG+AGG | - | chr5.1:6290240-6290259 | None:intergenic | 55.0% | |
| TGGTGATCTGGTTGGCAGAG+TGG | - | chr5.1:6289836-6289855 | None:intergenic | 55.0% | |
| TGTACAACCCGGAGCTCTTG+AGG | + | chr5.1:6290056-6290075 | MS.gene21517:CDS | 55.0% | |
| ! | GGTGTCACATGTGTAGGCGA+TGG | - | chr5.1:6290243-6290262 | None:intergenic | 55.0% |
| !! | AAGAAGCGCCTCCGTTCACA+AGG | + | chr5.1:6290129-6290148 | MS.gene21517:CDS | 55.0% |
| !! | CGATGGAGGTGTCTCATGTG+TGG | - | chr5.1:6290226-6290245 | None:intergenic | 55.0% |
| GCAGATTGCCCCACCTGTTG+AGG | - | chr5.1:6290631-6290650 | None:intergenic | 60.0% | |
| GGTGTCTCATGTGTGGGTGG+TGG | - | chr5.1:6290219-6290238 | None:intergenic | 60.0% | |
| TTGGCTGCCTCAAGAGCTCC+GGG | - | chr5.1:6290066-6290085 | None:intergenic | 60.0% | |
| !! | GGAGGTGTCTCATGTGTGGG+TGG | - | chr5.1:6290222-6290241 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 6289790 | 6292371 | 6289790 | ID=MS.gene21517 |
| chr5.1 | mRNA | 6289790 | 6292371 | 6289790 | ID=MS.gene21517.t1;Parent=MS.gene21517 |
| chr5.1 | exon | 6289790 | 6289930 | 6289790 | ID=MS.gene21517.t1.exon1;Parent=MS.gene21517.t1 |
| chr5.1 | CDS | 6289790 | 6289930 | 6289790 | ID=cds.MS.gene21517.t1;Parent=MS.gene21517.t1 |
| chr5.1 | exon | 6290033 | 6290429 | 6290033 | ID=MS.gene21517.t1.exon2;Parent=MS.gene21517.t1 |
| chr5.1 | CDS | 6290033 | 6290429 | 6290033 | ID=cds.MS.gene21517.t1;Parent=MS.gene21517.t1 |
| chr5.1 | exon | 6290530 | 6290777 | 6290530 | ID=MS.gene21517.t1.exon3;Parent=MS.gene21517.t1 |
| chr5.1 | CDS | 6290530 | 6290777 | 6290530 | ID=cds.MS.gene21517.t1;Parent=MS.gene21517.t1 |
| chr5.1 | exon | 6291383 | 6291484 | 6291383 | ID=MS.gene21517.t1.exon4;Parent=MS.gene21517.t1 |
| chr5.1 | CDS | 6291383 | 6291484 | 6291383 | ID=cds.MS.gene21517.t1;Parent=MS.gene21517.t1 |
| chr5.1 | exon | 6291708 | 6292001 | 6291708 | ID=MS.gene21517.t1.exon5;Parent=MS.gene21517.t1 |
| chr5.1 | CDS | 6291708 | 6292001 | 6291708 | ID=cds.MS.gene21517.t1;Parent=MS.gene21517.t1 |
| chr5.1 | exon | 6292342 | 6292371 | 6292342 | ID=MS.gene21517.t1.exon6;Parent=MS.gene21517.t1 |
| chr5.1 | CDS | 6292342 | 6292371 | 6292342 | ID=cds.MS.gene21517.t1;Parent=MS.gene21517.t1 |
| Gene Sequence |
| Protein sequence |
