AlfalfaGEDB | MS.gene22074

M. sativa cultivar XinJiangDaYe / MS.gene22074

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF08263.15 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22074.t1	XP_003599915.2	75.2	766	185	2	11	773	33	796	5.50E-212	747.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22074.t1	Q6JN46	33.6	625	230	12	11	455	35	654	3.7e-23	111.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22074.t1	G7IZY4	75.2	766	185	2	11	773	26	789	4.0e-212	747.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050772	MS.gene22074	0.812108	5.00E-51	-1.69E-46
MS.gene051438	MS.gene22074	0.811076	8.39E-51	-1.69E-46
MS.gene051858	MS.gene22074	0.800256	1.57E-48	-1.69E-46
MS.gene051874	MS.gene22074	0.827842	1.25E-54	-1.69E-46
MS.gene052870	MS.gene22074	0.802315	5.95E-49	-1.69E-46
MS.gene052872	MS.gene22074	0.803127	4.04E-49	-1.69E-46
MS.gene053009	MS.gene22074	0.821302	4.34E-53	-1.69E-46
MS.gene053824	MS.gene22074	0.804143	2.49E-49	-1.69E-46
MS.gene053912	MS.gene22074	0.81082	9.53E-51	-1.69E-46
MS.gene053916	MS.gene22074	0.826944	2.05E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene22074.t1	MTR_3g048785	77.706	776	161	5	2	771	26	795	1182
MS.gene22074.t1	MTR_3g048910	77.676	766	166	2	11	773	26	789	1171
MS.gene22074.t1	MTR_3g452730	78.507	777	159	2	5	773	4	780	1163
MS.gene22074.t1	MTR_3g452770	78.312	770	165	2	5	773	21	789	1110
MS.gene22074.t1	MTR_3g041560	75.259	772	180	3	5	773	28	791	1101
MS.gene22074.t1	MTR_3g041560	75.259	772	180	3	5	773	4	767	1099
MS.gene22074.t1	MTR_3g449240	73.446	772	194	5	1	765	22	789	1088
MS.gene22074.t1	MTR_0640s0020	73.616	777	192	5	1	772	24	792	1081
MS.gene22074.t1	MTR_3g048860	74.189	771	185	3	5	772	4	763	1080
MS.gene22074.t1	MTR_3g048740	72.432	769	162	6	5	773	28	746	1070

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22074.t1	AT2G34930	31.169	693	350	18	84	690	245	896	7.85e-75	261
MS.gene22074.t1	AT2G34930	29.827	751	377	22	11	666	33	728	2.15e-55	206
MS.gene22074.t1	AT5G25910	30.567	759	403	23	13	690	24	739	3.37e-70	246
MS.gene22074.t1	AT4G13920	29.455	825	413	21	11	690	26	826	3.42e-68	242
MS.gene22074.t1	AT5G46330	30.429	792	417	27	17	699	32	798	1.67e-66	240
MS.gene22074.t1	AT5G46330	30.429	792	417	27	17	699	32	798	1.67e-66	240
MS.gene22074.t1	AT1G71400	28.388	856	463	26	11	764	34	841	4.95e-66	235
MS.gene22074.t1	AT3G05660	29.282	864	457	32	11	753	30	860	2.31e-65	234
MS.gene22074.t1	AT3G11010	28.326	872	455	26	11	730	38	891	1.02e-64	233
MS.gene22074.t1	AT3G11010	28.009	864	465	25	32	758	9	852	1.70e-64	231

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Find 152 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCATCAGGTATATGAG+AGG	0.657703	3.3:-39715849	None:intergenic
AAATCAACATAACCTGCTAT+TGG	0.431944	3.3:-39716523	None:intergenic
AAATGTAATTCTAATAGTGA+AGG	0.595489	3.3:-39715737	None:intergenic
AAATTCAAATACTCAACAGA+TGG	0.536142	3.3:-39715785	None:intergenic
AAATTGTTCTGACATAAGGT+TGG	0.517946	3.3:+39716462	MS.gene22074:CDS
AACTGGTAGTCCTAAACTTG+TGG	0.527987	3.3:+39716599	MS.gene22074:CDS
AAGGAATTGATCCTTGTAGT+TGG	0.494853	3.3:-39716060	None:intergenic
AAGGCCCACACTTTCCATTT+TGG	0.184879	3.3:+39716284	MS.gene22074:CDS
AAGGTCTAAGTGAAACAAAT+TGG	0.487987	3.3:-39716806	None:intergenic
AAGTATTGTGACATCATGAT+TGG	0.444964	3.3:-39716718	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCAACATAACCTGCTAT+TGG	-	chr3.3:39716526-39716545	None:intergenic	30.0%
AAATTGTTCTGACATAAGGT+TGG	+	chr3.3:39716462-39716481	MS.gene22074:CDS	30.0%
AAGGTCTAAGTGAAACAAAT+TGG	-	chr3.3:39716809-39716828	None:intergenic	30.0%
ACATTGTTAACCTTCAAACA+AGG	+	chr3.3:39715290-39715309	MS.gene22074:CDS	30.0%
AGTTGTATTGCTCAATGAAA+GGG	-	chr3.3:39716263-39716282	None:intergenic	30.0%
ATAAGGAATTTAAGGAAGAG+AGG	-	chr3.3:39716099-39716118	None:intergenic	30.0%
ATACACATAATCTTGACCTT+TGG	-	chr3.3:39716938-39716957	None:intergenic	30.0%
ATCTTCATAAGGAAACCAAT+TGG	+	chr3.3:39715693-39715712	MS.gene22074:CDS	30.0%
ATGATCTAAACTAGAGAGTT+TGG	-	chr3.3:39716170-39716189	None:intergenic	30.0%
ATTATTAGAGCCAATCCATA+AGG	-	chr3.3:39716116-39716135	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	39715239	39717560	39715239	ID=MS.gene22074
chr3.3	mRNA	39715239	39717560	39715239	ID=MS.gene22074.t1;Parent=MS.gene22074
chr3.3	exon	39715239	39717560	39715239	ID=MS.gene22074.t1.exon1;Parent=MS.gene22074.t1
chr3.3	CDS	39715239	39717560	39715239	ID=cds.MS.gene22074.t1;Parent=MS.gene22074.t1

Gene Sequence

>MS.gene22074

ATGTCTAGCAATAATCACAGGGTGCTTGGATGCAATCACAAAGATCGAGAGACATTGTTAACCTTCAAACAAGGCATCAATGACACTCTTGGTCGGATATCAACGTGGTCAACCGAAAATGATTGTTGTGCTTGGCAAGGAGTCCACTGTGACAACATTACCCGAAGAGTTACAAAAATTGATCTCACACCTAATTTTGAAGATGAGCCAGTCAGATATTTGAAAGGTGAGATGAATCTTTGTATTCTAGAACTTGAGTTTCTTAGTTATTTGGATTTGAGTGATAATGAATTTGATGTAATAAGAATTCCATCCATTCAACACAACATCACACATTCCTCTAAACTTGTCTACCTTGACTTATCCACTTCCTACAGTTATAATCTGCACATGGATAATCTTGATTGGCTTTCTCCACTTTCTTCCTTAAAATATCTCTACCTCATTGGAATTGATCTTCATAAGGAAACCAATTGGCTTCAAATAGTGAATACACTTCCTTCACTATTAGAATTACATTTGAATGAATGTAACCTGAACAACTTCCCATCTGTTGAGTATTTGAATTTGTTTTCAATTGTAACTCTTGCTCTTTCTGACAACAACTTCACCTCTCATATACCTGATGGGTTTTTTAATCTCACCAAATATCTCACTTATCTTTACCTTTCAGAGAGTCATATACATGGTGAGATACCTTCAAGCTTGCTAAACCTTCAAAATTTGACAGACCTTTATCTCTCTTATAACCAACTACAAGGATCAGTTCCAGAAGAAATAGGCCAACTTGCCCATATTCAACACCTTGATCTCTCTGAAAACCAACTACAAGGATCAATTCCTTCAACTCTAGGAAACCTCTCTTCCTTAAATTCCTTATGGATTGGCTCTAATAATTTCTCTGGTGAAATTTCAAATTTACATTTTTCCAAACTCTCTAGTTTAGATCATCTAGACATGAGTAATTCAAATTTTGTATTCCAATTTGATTTGGATTGGGTTCCTCCTTTTCAACTCCATTCCCTTTCATTGAGCAATACAACTCAAGGCCCACACTTTCCATTTTGGATATATACACAAAAGTCATTGCAATATCTCGACTTATCGAGCTCGGGAATTTCATTGGTAGATAGAAATAAGTTTTCGAGCCTTATAGAAAGAATAACTGGACAACTTATTTTGTCAAACAATTCGATTGCTGAAGACATATCTATCCTAACACTAAATTGTTCTGACATAAGGTTGGATCACAACAATTTCATAGGAGGACTCCCAAACATATCACCAATAGCAGGTTATGTTGATTTGTCTTACAACTCCTTCTCAGGATCAATTCCACAAAGTTGGAAGAACTTGGAAGAACTGGTAGTCCTAAACTTGTGGAGTAATAGGCTATCTGGTGAAGTTCCAGAGCACCTCTCTGCTTCGAAACCACTGAGATTCTTGAATTTGGGAGAAAATGAATTTTCTGGAACCATACCAATCATGATGTCACAATACTTAGAAGTGGTCATATTGAGAGCTAACCAATTTGAAGGTACCATTCCACAACAACTATTCAATCTCTCCAATTTGTTTCACTTAGACCTTGCACATAACAAATTTTCAGGATCTTTGCCACACTGTGTCTACAACTTGACTCATATGGTTACTTATCATTTGGATGTCTATGATGATACAACTGTTGATTTATTTACCAAAGGTCAAGATTATGTGTATCATGTTAAGCCATATAGGCGAACTATTGACCTTTCAGCCAATCACTTGACTGGAGAAGTGCCATTGGAATTGTTTCGGCTTGTTCAAGTTCAATCATTAAACTTATCTCACAATAGTTTCATTGGAACAATTCCTAAGAAGATTGGAGGCATGAAAAATATGGAATCTCTCGATCTCTCTAATAATAAGTTTTGTGGTGAAATTCCTCAGAGCATGTCTGTCTTAACCTTTTTGGGTTATTTGAATTTATCTTACAACAGTTTTGAAGGAAAAATCCCAGTTGGAACTCAACTTCAAAGTTTTAATGCATCAAGTTATATTGGGAATCCTAAACTATGCGGAGCTCCTCTTAATAATTGTACCATGAAAGAAGAAAATCCTAAAACTGCAACGTCATCAACAGATAATGAAGATGATGACTCTTTAAGAGAATCATTGTATCTAGGCATGGGAGTTGGATTTGCAGTTGGTTTCTGGGGGATTTGTGGTTCTTTGTTTCTTATTAGGAAATGGAGGCATGCATACTTTCGGTTTATATATGGAGTGGGTGACAAGCTCTATGTTGCTTTGACGGTAAAGTTGAATAGCTTTCGCAGAAATTGA

Protein sequence

>MS.gene22074.t1

MSSNNHRVLGCNHKDRETLLTFKQGINDTLGRISTWSTENDCCAWQGVHCDNITRRVTKIDLTPNFEDEPVRYLKGEMNLCILELEFLSYLDLSDNEFDVIRIPSIQHNITHSSKLVYLDLSTSYSYNLHMDNLDWLSPLSSLKYLYLIGIDLHKETNWLQIVNTLPSLLELHLNECNLNNFPSVEYLNLFSIVTLALSDNNFTSHIPDGFFNLTKYLTYLYLSESHIHGEIPSSLLNLQNLTDLYLSYNQLQGSVPEEIGQLAHIQHLDLSENQLQGSIPSTLGNLSSLNSLWIGSNNFSGEISNLHFSKLSSLDHLDMSNSNFVFQFDLDWVPPFQLHSLSLSNTTQGPHFPFWIYTQKSLQYLDLSSSGISLVDRNKFSSLIERITGQLILSNNSIAEDISILTLNCSDIRLDHNNFIGGLPNISPIAGYVDLSYNSFSGSIPQSWKNLEELVVLNLWSNRLSGEVPEHLSASKPLRFLNLGENEFSGTIPIMMSQYLEVVILRANQFEGTIPQQLFNLSNLFHLDLAHNKFSGSLPHCVYNLTHMVTYHLDVYDDTTVDLFTKGQDYVYHVKPYRRTIDLSANHLTGEVPLELFRLVQVQSLNLSHNSFIGTIPKKIGGMKNMESLDLSNNKFCGEIPQSMSVLTFLGYLNLSYNSFEGKIPVGTQLQSFNASSYIGNPKLCGAPLNNCTMKEENPKTATSSTDNEDDDSLRESLYLGMGVGFAVGFWGICGSLFLIRKWRHAYFRFIYGVGDKLYVALTVKLNSFRRN