AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051438


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051438.t1 MTR_1g063100 93.697 238 11 4 1 236 1 236 5.15e-161 445
MS.gene051438.t1 MTR_1g063100 92.473 186 10 4 1 184 1 184 2.25e-119 338
MS.gene051438.t1 MTR_1g063100 92.896 183 9 4 1 181 1 181 9.29e-118 334
MS.gene051438.t1 MTR_1g063100 92.896 183 9 4 1 181 1 181 1.48e-117 336
MS.gene051438.t1 MTR_1g063100 96.774 155 5 0 82 236 39 193 7.64e-111 316
MS.gene051438.t1 MTR_1g063100 97.000 100 3 0 82 181 39 138 6.75e-68 208
MS.gene051438.t1 MTR_6g035275 94.643 56 3 0 128 183 1 56 2.43e-34 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051438.t1 AT2G36895 62.656 241 75 4 1 236 1 231 4.12e-105 303
MS.gene051438.t1 AT2G36895 62.397 242 75 5 1 236 1 232 2.05e-103 299
MS.gene051438.t1 AT2G36895 56.134 269 75 6 1 236 1 259 2.98e-97 285

Find 67 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTCCAGGGACTTGATA+TGG 0.196375 1.1:-47703777 MS.gene051438:intron
CTGTTGCAGTACCGTTACTA+TGG 0.277856 1.1:-47701933 MS.gene051438:CDS
GGAGGAGGAATGAGTTGCTT+TGG 0.291316 1.1:+47705301 None:intergenic
GAGGAGGAATGAGTTGCTTT+GGG 0.321300 1.1:+47705302 None:intergenic
AAGAGAATCTGAATCTGAAT+AGG 0.338244 1.1:+47705435 None:intergenic
GAACCATGTTGCCTCCGATT+TGG 0.352718 1.1:+47704619 None:intergenic
TGAGAGGTAGAAGGAGCAAC+AGG 0.364803 1.1:+47705347 None:intergenic
GACTTCTCACAGAAATTCAA+TGG 0.398474 1.1:-47704686 MS.gene051438:intron
ACCTAGACAAAGGCCTTGAT+TGG 0.415493 1.1:+47703897 None:intergenic
GTTGTTGAATGAGAAAGATT+TGG 0.415537 1.1:+47705379 None:intergenic
AGAAATTCAATGGGTTTCTC+AGG 0.422443 1.1:-47704676 MS.gene051438:CDS
TCTTTCCAGGGACTTGATAT+GGG 0.428716 1.1:-47703776 MS.gene051438:intron
CTCGAAGGAATCGTTGTTGT+TGG 0.431175 1.1:+47705280 None:intergenic
CCTTGGTCCGACGATGATAA+CGG 0.451977 1.1:-47705251 MS.gene051438:intron
AGAGAATCTGAATCTGAATA+GGG 0.461673 1.1:+47705436 None:intergenic
AGACGAGGATGAGAGGTAGA+AGG 0.468888 1.1:+47705338 None:intergenic
TGGAGGAGGAATTGTAGAGA+AGG 0.473722 1.1:-47701866 MS.gene051438:CDS
AGGCGAAGTGTCTCAGAAGC+TGG 0.476255 1.1:+47701901 None:intergenic
GAATTGTAGAGAAGGTCTAT+TGG 0.491347 1.1:-47701858 MS.gene051438:CDS
TTTGGAAGAACGATGAATGA+TGG 0.491956 1.1:+47705397 None:intergenic
CAGTCCGTCAGTGGTGAAGA+AGG 0.505748 1.1:+47704644 None:intergenic
ATTCCTTCGAGTTCTTCCCT+TGG 0.517845 1.1:-47705268 MS.gene051438:CDS
TTTACCTTCTTCACCACTGA+CGG 0.518009 1.1:-47704648 MS.gene051438:CDS
ACTTCTCACAGAAATTCAAT+GGG 0.519019 1.1:-47704685 MS.gene051438:intron
TGTTGCAGTACCGTTACTAT+GGG 0.522829 1.1:-47701932 MS.gene051438:CDS
CCTAGACAAAGGCCTTGATT+GGG 0.524442 1.1:+47703898 None:intergenic
GGAATCGTTGTTGTTGGAGG+AGG 0.526523 1.1:+47705286 None:intergenic
AACTACATGGATCCCAATCA+AGG 0.527063 1.1:-47703910 MS.gene051438:CDS
ACAGGTGATTGCTGCAGAGA+AGG 0.530154 1.1:-47701992 MS.gene051438:intron
ATACTGTCTTGGAGCATGGT+GGG 0.536785 1.1:-47703691 MS.gene051438:CDS
CGTTATCATCGTCGGACCAA+GGG 0.543998 1.1:+47705252 None:intergenic
GAAGGAATCGTTGTTGTTGG+AGG 0.547888 1.1:+47705283 None:intergenic
ACTGACGGACTGATCCAAAT+CGG 0.552411 1.1:-47704633 MS.gene051438:CDS
GGAGGAATGAGTTGCTTTGG+GGG 0.553111 1.1:+47705304 None:intergenic
CCGTTATCATCGTCGGACCA+AGG 0.555351 1.1:+47705251 None:intergenic
CGCCTAGCTGTTAAAAGTGG+AGG 0.555989 1.1:-47701883 MS.gene051438:CDS
CCCAATCAAGGCCTTTGTCT+AGG 0.561143 1.1:-47703898 MS.gene051438:CDS
CGATGAATGATGGAATTGAA+TGG 0.567336 1.1:+47705407 None:intergenic
CTCATGTTTCACAGAAGCAA+GGG 0.567711 1.1:-47703975 MS.gene051438:intron
GTATCAAGAGAGCAACTACA+TGG 0.569947 1.1:-47703923 MS.gene051438:CDS
CTAGCTGTTAAAAGTGGAGG+AGG 0.572051 1.1:-47701880 MS.gene051438:CDS
CTTCGCCTAGCTGTTAAAAG+TGG 0.572780 1.1:-47701886 MS.gene051438:CDS
TACTGTCTTGGAGCATGGTG+GGG 0.575565 1.1:-47703690 MS.gene051438:CDS
ACGAAGAAGACGAGGATGAG+AGG 0.584511 1.1:+47705331 None:intergenic
TCTCATGTTTCACAGAAGCA+AGG 0.584656 1.1:-47703976 MS.gene051438:intron
AGGAGGAATGAGTTGCTTTG+GGG 0.585072 1.1:+47705303 None:intergenic
CAAGATACTGTCTTGGAGCA+TGG 0.591033 1.1:-47703695 MS.gene051438:CDS
TCAGAAGACTTGACGCGACG+AGG 0.594267 1.1:+47704597 None:intergenic
TGTCTTGGAGCATGGTGGGG+AGG 0.619288 1.1:-47703687 MS.gene051438:intron
TAACGGTACTGCAACAGTCA+TGG 0.619563 1.1:+47701939 None:intergenic
GATACTGTCTTGGAGCATGG+TGG 0.619582 1.1:-47703692 MS.gene051438:CDS
GATCCAAATCGGAGGCAACA+TGG 0.621305 1.1:-47704622 MS.gene051438:CDS
GAGCGAACCGTTATCATCGT+CGG 0.621641 1.1:+47705244 None:intergenic
GCTGCAGAGAAGGCAAGCAG+AGG 0.622884 1.1:-47701982 MS.gene051438:CDS
CAAAGAGTGCACCTAGACAA+AGG 0.629542 1.1:+47703887 None:intergenic
TGAATGATGGAATTGAATGG+TGG 0.640438 1.1:+47705410 None:intergenic
GATTGAGATGCTTAGTGATG+TGG 0.643100 1.1:-47703720 MS.gene051438:CDS
GATTTGGATCAGTCCGTCAG+TGG 0.643323 1.1:+47704635 None:intergenic
CACTAAGCATCTCAATCGAG+CGG 0.647776 1.1:+47703726 None:intergenic
GGAGGAACGCCCCATAGTAA+CGG 0.657618 1.1:+47701922 None:intergenic
GGACCAAGGGAAGAACTCGA+AGG 0.665595 1.1:+47705265 None:intergenic
TGTGGTGCAAGATACTGTCT+TGG 0.665794 1.1:-47703702 MS.gene051438:CDS
GAGAGGTAGAAGGAGCAACA+GGG 0.668927 1.1:+47705348 None:intergenic
GGGGAGAAACGAAGAAGACG+AGG 0.670848 1.1:+47705323 None:intergenic
CGAAGTGTCTCAGAAGCTGG+AGG 0.672033 1.1:+47701904 None:intergenic
GACGGACTGATCCAAATCGG+AGG 0.686153 1.1:-47704630 MS.gene051438:CDS
GTTGCAGTACCGTTACTATG+GGG 0.737622 1.1:-47701931 MS.gene051438:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCTTTACTTAAAATAAAA+TGG - chr1.1:47702838-47702857 MS.gene051438:intron 10.0%
!!! TTATTTTAAGTAAAGATTTT+GGG + chr1.1:47702836-47702855 None:intergenic 10.0%
!!! TTTATTTTAAGTAAAGATTT+TGG + chr1.1:47702837-47702856 None:intergenic 10.0%
!! ATGAAACAAAATCTAAATAT+TGG + chr1.1:47705214-47705233 None:intergenic 15.0%
!!! AAATGTAAATTTTTGTTTTC+TGG - chr1.1:47704294-47704313 MS.gene051438:intron 15.0%
!!! AATGTAAATTTTTGTTTTCT+GGG - chr1.1:47704295-47704314 MS.gene051438:intron 15.0%
!!! ATGTTGAAATTTAACTTTAT+TGG - chr1.1:47702974-47702993 MS.gene051438:intron 15.0%
!!! GCTTTTTATAATTTAAAGAA+TGG - chr1.1:47702424-47702443 MS.gene051438:intron 15.0%
!!! TAAATTTCAACATATGTTTT+GGG + chr1.1:47702967-47702986 None:intergenic 15.0%
!!! TTAAATTTCAACATATGTTT+TGG + chr1.1:47702968-47702987 None:intergenic 15.0%
!! AAACATAATGAAATTGTGAA+AGG + chr1.1:47704061-47704080 None:intergenic 20.0%
!! AATATTAAGATACTTAGCTA+GGG + chr1.1:47705045-47705064 None:intergenic 20.0%
!! ACATAAAAAAAACTATCAGT+AGG + chr1.1:47702747-47702766 None:intergenic 20.0%
!! ATAGAGTATAACATAAAATC+TGG - chr1.1:47704475-47704494 MS.gene051438:intron 20.0%
!! TAATATTAAGATACTTAGCT+AGG + chr1.1:47705046-47705065 None:intergenic 20.0%
!! TCTTAATATTAATAAGTAGC+TGG - chr1.1:47705055-47705074 MS.gene051438:intron 20.0%
!! TTAAAAACTAAAGCTGTTAT+TGG - chr1.1:47703050-47703069 MS.gene051438:intron 20.0%
!! TTTCTTCAATTGAATACAAA+AGG + chr1.1:47702933-47702952 None:intergenic 20.0%
!!! AAAATGTTTTCAACATAGTA+AGG + chr1.1:47704629-47704648 None:intergenic 20.0%
!!! AAATTTAACTTTATTGGAAG+AGG - chr1.1:47702980-47702999 MS.gene051438:intron 20.0%
!!! AATGGATTTAAACAATAAGA+TGG + chr1.1:47703259-47703278 None:intergenic 20.0%
!!! AATTTAACTTTATTGGAAGA+GGG - chr1.1:47702981-47703000 MS.gene051438:intron 20.0%
!!! ATATTATTTTAGGCTAATTC+TGG + chr1.1:47704598-47704617 None:intergenic 20.0%
!!! GAATTAGCGTAATTTTTTTT+TGG - chr1.1:47704567-47704586 MS.gene051438:intron 20.0%
!!! TACGAAATCACTAAAATTTT+AGG - chr1.1:47704184-47704203 MS.gene051438:intron 20.0%
!!! TCAGATAAAATCATTTTAAC+TGG + chr1.1:47702468-47702487 None:intergenic 20.0%
!!! TTCTTTTAGCTATAAAACAA+TGG - chr1.1:47703651-47703670 MS.gene051438:intron 20.0%
!!! TTTAATGAAACCTGTATTTT+GGG - chr1.1:47703793-47703812 MS.gene051438:intron 20.0%
!!! TTTTAATGAAACCTGTATTT+TGG - chr1.1:47703792-47703811 MS.gene051438:intron 20.0%
! AAACTGCTAAAAAATATCAG+CGG - chr1.1:47703347-47703366 MS.gene051438:intron 25.0%
! ACACGTTAAATTCAAAGATT+AGG - chr1.1:47702132-47702151 MS.gene051438:intron 25.0%
! ACTTATTAGCAGCTATTAAA+GGG - chr1.1:47705127-47705146 MS.gene051438:intron 25.0%
! AGTATAACATAAAATCTGGT+GGG - chr1.1:47704479-47704498 MS.gene051438:intron 25.0%
! ATAATTCAAACTCCTGTAAT+GGG + chr1.1:47704965-47704984 None:intergenic 25.0%
! CACGTTAAATTCAAAGATTA+GGG - chr1.1:47702133-47702152 MS.gene051438:intron 25.0%
! CAGATAAATAGTTCTTCTAA+TGG + chr1.1:47703935-47703954 None:intergenic 25.0%
! GTCTAAAGGTTATGATAAAT+TGG + chr1.1:47704101-47704120 None:intergenic 25.0%
! TAATCTTTGAATTTAACGTG+TGG + chr1.1:47702133-47702152 None:intergenic 25.0%
! TACTTATTAGCAGCTATTAA+AGG - chr1.1:47705126-47705145 MS.gene051438:intron 25.0%
! TATCTAGTGATAGAAAAATG+TGG - chr1.1:47704508-47704527 MS.gene051438:intron 25.0%
! TTTACATTTCAGCACAAATT+CGG + chr1.1:47704283-47704302 None:intergenic 25.0%
! TTTATGGGTAATAACATGTT+TGG - chr1.1:47705082-47705101 MS.gene051438:intron 25.0%
!! AATTATGTACTCGTTCTTTT+TGG - chr1.1:47703088-47703107 MS.gene051438:intron 25.0%
!! AGATTTATTTGCGTTTTTCA+TGG - chr1.1:47702531-47702550 MS.gene051438:intron 25.0%
!! CCATTAGAGCTAATTTTATA+TGG - chr1.1:47705274-47705293 MS.gene051438:CDS 25.0%
!! TATCTGAAAGTCTGAATTTT+GGG - chr1.1:47702481-47702500 MS.gene051438:intron 25.0%
!! TTATCTGAAAGTCTGAATTT+TGG - chr1.1:47702480-47702499 MS.gene051438:intron 25.0%
!! TTTTAATATACCAGTTCTTC+AGG - chr1.1:47704892-47704911 MS.gene051438:intron 25.0%
!!! ATTAATTTGCATGTATAGTG+TGG - chr1.1:47702204-47702223 MS.gene051438:intron 25.0%
!!! CCATATAAAATTAGCTCTAA+TGG + chr1.1:47705277-47705296 None:intergenic 25.0%
!!! CTGATATTTTTTAGCAGTTT+GGG + chr1.1:47703347-47703366 None:intergenic 25.0%
!!! GAATCAGCTTTTAACTTTTA+AGG - chr1.1:47703181-47703200 MS.gene051438:intron 25.0%
!!! TTCTTTTAGATTAGCTAAGT+AGG - chr1.1:47703292-47703311 MS.gene051438:intron 25.0%
!!! TTTGAGCTTGTTGTTTAATT+AGG - chr1.1:47703856-47703875 MS.gene051438:intron 25.0%
AAACACTACCTTAAGATCTT+TGG - chr1.1:47704756-47704775 MS.gene051438:intron 30.0%
AAGAATCTCTGACATTGAAA+TGG + chr1.1:47703277-47703296 None:intergenic 30.0%
AAGAGAATCTGAATCTGAAT+AGG + chr1.1:47701860-47701879 None:intergenic 30.0%
AAGTGGGATTGTTTATTTAG+TGG + chr1.1:47703733-47703752 None:intergenic 30.0%
AATTGAATACAAAAGGAGCT+TGG + chr1.1:47702926-47702945 None:intergenic 30.0%
AATTTGAATTTCCTCTTTCC+AGG - chr1.1:47703503-47703522 MS.gene051438:intron 30.0%
ACTTCTCACAGAAATTCAAT+GGG - chr1.1:47702607-47702626 MS.gene051438:intron 30.0%
AGAACATCAATTAGCATATG+TGG + chr1.1:47703882-47703901 None:intergenic 30.0%
AGAGAATCTGAATCTGAATA+GGG + chr1.1:47701859-47701878 None:intergenic 30.0%
AGATGTAAGTTTAACATGCT+AGG + chr1.1:47704873-47704892 None:intergenic 30.0%
AGGTCAATTTCCAATTGTTT+AGG - chr1.1:47704912-47704931 MS.gene051438:intron 30.0%
ATAACATGTTTGGAAAATCC+TGG - chr1.1:47705092-47705111 MS.gene051438:intron 30.0%
ATGAAATTGTGAAAGGAAGT+AGG + chr1.1:47704054-47704073 None:intergenic 30.0%
ATTAAACAAACTCTGATCCT+TGG - chr1.1:47704025-47704044 MS.gene051438:intron 30.0%
ATTTGAATTTCCTCTTTCCA+GGG - chr1.1:47703504-47703523 MS.gene051438:intron 30.0%
CATAATTCAAACTCCTGTAA+TGG + chr1.1:47704966-47704985 None:intergenic 30.0%
GAGTATAACATAAAATCTGG+TGG - chr1.1:47704478-47704497 MS.gene051438:intron 30.0%
GATGCTACACAAAAAAACTA+GGG - chr1.1:47704727-47704746 MS.gene051438:intron 30.0%
GTTGGGTTTATATCATCAAT+TGG - chr1.1:47704380-47704399 MS.gene051438:intron 30.0%
GTTGTTGAATGAGAAAGATT+TGG + chr1.1:47701916-47701935 None:intergenic 30.0%
TAATTCAAACTCCTGTAATG+GGG + chr1.1:47704964-47704983 None:intergenic 30.0%
TATATCATCAATTGGAGATG+TGG - chr1.1:47704388-47704407 MS.gene051438:intron 30.0%
TATGAAGATTGTTCAATTGC+AGG + chr1.1:47705003-47705022 None:intergenic 30.0%
TGATGCTACACAAAAAAACT+AGG - chr1.1:47704726-47704745 MS.gene051438:intron 30.0%
TTAAACAAACTCTGATCCTT+GGG - chr1.1:47704026-47704045 MS.gene051438:intron 30.0%
TTAGTATTATGAGGGTCTAA+AGG + chr1.1:47704115-47704134 None:intergenic 30.0%
TTCACAAGATCCTAAACAAT+TGG + chr1.1:47704925-47704944 None:intergenic 30.0%
! AAGATCTTAAGGTAGTGTTT+TGG + chr1.1:47704756-47704775 None:intergenic 30.0%
! AGCTGTTATTGGTGATTATA+AGG - chr1.1:47703061-47703080 MS.gene051438:intron 30.0%
! ATAAGTAGCTGGAACTTTTA+TGG - chr1.1:47705066-47705085 MS.gene051438:intron 30.0%
! ATCTGAAAGTCTGAATTTTG+GGG - chr1.1:47702482-47702501 MS.gene051438:intron 30.0%
! GGCTTAGGACATATTATTTT+AGG + chr1.1:47704608-47704627 None:intergenic 30.0%
! TAAGTAGCTGGAACTTTTAT+GGG - chr1.1:47705067-47705086 MS.gene051438:intron 30.0%
! TTTTCAACATAGTAAGGCTT+AGG + chr1.1:47704623-47704642 None:intergenic 30.0%
!! TCTCATTTGAAGCACTTTTT+AGG - chr1.1:47702343-47702362 MS.gene051438:intron 30.0%
!!! AAACCTGTATTTTGGGTTAA+CGG - chr1.1:47703800-47703819 MS.gene051438:intron 30.0%
!!! GCTGATATTTTTTAGCAGTT+TGG + chr1.1:47703348-47703367 None:intergenic 30.0%
!!! TCTGCTTTTAGAACATTCAA+AGG - chr1.1:47704688-47704707 MS.gene051438:intron 30.0%
ACAATAAAAATCTCAGCAGC+TGG + chr1.1:47702871-47702890 None:intergenic 35.0%
ACTGTTGCAATGTAGCAAAA+AGG + chr1.1:47702789-47702808 None:intergenic 35.0%
AGGTTATGATAAATTGGACG+AGG + chr1.1:47704095-47704114 None:intergenic 35.0%
AGTCTTCCATGTAGAACAAT+TGG - chr1.1:47703146-47703165 MS.gene051438:intron 35.0%
ATGATGCCAATTGTTCTACA+TGG + chr1.1:47703155-47703174 None:intergenic 35.0%
CAGCAAACGATAACTCATAA+AGG + chr1.1:47703476-47703495 None:intergenic 35.0%
CTCTAATGGTCACAGAATTT+AGG + chr1.1:47705263-47705282 None:intergenic 35.0%
GAATTGTAGAGAAGGTCTAT+TGG - chr1.1:47705434-47705453 MS.gene051438:CDS 35.0%
GACTTCTCACAGAAATTCAA+TGG - chr1.1:47702606-47702625 MS.gene051438:intron 35.0%
GATACTTAGCTAGGGAAAAT+AGG + chr1.1:47705037-47705056 None:intergenic 35.0%
GTAATTAGTTACCCCATTAC+AGG - chr1.1:47704950-47704969 MS.gene051438:intron 35.0%
GTGTAGCATCAAATCAAAGT+GGG + chr1.1:47703749-47703768 None:intergenic 35.0%
TATGTAACTGGAGAGACTAA+AGG - chr1.1:47704412-47704431 MS.gene051438:intron 35.0%
TGATAGAAAAATGTGGTGCA+TGG - chr1.1:47704515-47704534 MS.gene051438:intron 35.0%
TGGGATTGTTTATTTAGTGG+TGG + chr1.1:47703730-47703749 None:intergenic 35.0%
TTCAATTGCAGGTGAATGAA+TGG + chr1.1:47704992-47705011 None:intergenic 35.0%
TTGTTCTACATGGAAGACTA+AGG + chr1.1:47703145-47703164 None:intergenic 35.0%
TTGTTGCAAAAAACTGCTTG+AGG - chr1.1:47702375-47702394 MS.gene051438:intron 35.0%
TTTGCTGGAACAGCAAATAA+AGG + chr1.1:47704850-47704869 None:intergenic 35.0%
TTTGGAAGAACGATGAATGA+TGG + chr1.1:47701898-47701917 None:intergenic 35.0%
! AGAAATTCAATGGGTTTCTC+AGG - chr1.1:47702616-47702635 MS.gene051438:intron 35.0%
! CGATGAATGATGGAATTGAA+TGG + chr1.1:47701888-47701907 None:intergenic 35.0%
! GATTTCGTAGAAAAGTGCAT+GGG + chr1.1:47704173-47704192 None:intergenic 35.0%
! GCTAATTTTATATGGCACAC+AGG - chr1.1:47705282-47705301 MS.gene051438:CDS 35.0%
! GGTCTAGCTTAGTATTATGA+GGG + chr1.1:47704123-47704142 None:intergenic 35.0%
! TACCTTAAGATCTTTGGAGA+GGG - chr1.1:47704762-47704781 MS.gene051438:intron 35.0%
! TGAATGATGGAATTGAATGG+TGG + chr1.1:47701885-47701904 None:intergenic 35.0%
! TGATTTCGTAGAAAAGTGCA+TGG + chr1.1:47704174-47704193 None:intergenic 35.0%
! TGCAACAGTTATCTTTTGTC+AGG - chr1.1:47702800-47702819 MS.gene051438:intron 35.0%
! TGGTCTAGCTTAGTATTATG+AGG + chr1.1:47704124-47704143 None:intergenic 35.0%
!! GAATTTTGGGGAAATTGTGT+TGG - chr1.1:47702494-47702513 MS.gene051438:intron 35.0%
!!! AACCTGTATTTTGGGTTAAC+GGG - chr1.1:47703801-47703820 MS.gene051438:intron 35.0%
!!! ATTGTGCATTTTTGGTTCAG+TGG - chr1.1:47704318-47704337 MS.gene051438:intron 35.0%
!!! TTTCTGGGATTGTGCATTTT+TGG - chr1.1:47704310-47704329 MS.gene051438:intron 35.0%
AACTACATGGATCCCAATCA+AGG - chr1.1:47703382-47703401 MS.gene051438:intron 40.0%
ACTTTCTGACTCACACAATG+AGG - chr1.1:47704144-47704163 MS.gene051438:intron 40.0%
AGAGGAATTGAAACCAGATG+AGG + chr1.1:47704236-47704255 None:intergenic 40.0%
AGAGTGGTTGAGAAGAAGAT+GGG - chr1.1:47704438-47704457 MS.gene051438:intron 40.0%
AGTGAGCTATCTGTGAAGTT+GGG - chr1.1:47704363-47704382 MS.gene051438:intron 40.0%
ATAAGTACCAACCAACTTCC+AGG + chr1.1:47705113-47705132 None:intergenic 40.0%
ATCACGTATCATTCCTCATC+TGG - chr1.1:47704220-47704239 MS.gene051438:intron 40.0%
ATGCTGGTAAAACACATGCT+AGG - chr1.1:47705152-47705171 MS.gene051438:intron 40.0%
CAGCTATTAAAGGGTAATGC+TGG - chr1.1:47705136-47705155 MS.gene051438:intron 40.0%
CATTGTGTGAGTCAGAAAGT+TGG + chr1.1:47704144-47704163 None:intergenic 40.0%
CGTGTAGCATCAAATCAAAG+TGG + chr1.1:47703750-47703769 None:intergenic 40.0%
CTCATGTTTCACAGAAGCAA+GGG - chr1.1:47703317-47703336 MS.gene051438:intron 40.0%
GAAGAAGATGGGGAATGATT+TGG - chr1.1:47704449-47704468 MS.gene051438:intron 40.0%
GATTGAGATGCTTAGTGATG+TGG - chr1.1:47703572-47703591 MS.gene051438:intron 40.0%
GTATCAAGAGAGCAACTACA+TGG - chr1.1:47703369-47703388 MS.gene051438:intron 40.0%
GTTTAACATGCTAGGTTTGC+TGG + chr1.1:47704865-47704884 None:intergenic 40.0%
GTTTGGAAAATCCTGGAAGT+TGG - chr1.1:47705099-47705118 MS.gene051438:intron 40.0%
TACCCTCTCCAAAGATCTTA+AGG + chr1.1:47704767-47704786 None:intergenic 40.0%
TCTCATGTTTCACAGAAGCA+AGG - chr1.1:47703316-47703335 MS.gene051438:intron 40.0%
TCTTTCCAGGGACTTGATAT+GGG - chr1.1:47703516-47703535 MS.gene051438:intron 40.0%
TGCTGGTAAAACACATGCTA+GGG - chr1.1:47705153-47705172 MS.gene051438:intron 40.0%
TGGAAATTGACCTGAAGAAC+TGG + chr1.1:47704905-47704924 None:intergenic 40.0%
TGGAGATGTGGTTATGTAAC+TGG - chr1.1:47704400-47704419 MS.gene051438:intron 40.0%
TGGTGGTAAAATGTTGTGCA+TGG + chr1.1:47703713-47703732 None:intergenic 40.0%
TGTTGCAGTACCGTTACTAT+GGG - chr1.1:47705360-47705379 MS.gene051438:CDS 40.0%
TTCCTCTTCTGCTGAATCAT+CGG - chr1.1:47704249-47704268 MS.gene051438:intron 40.0%
TTTACCTTCTTCACCACTGA+CGG - chr1.1:47702644-47702663 MS.gene051438:intron 40.0%
! ACAATATCAAAGCATCCGAG+TGG + chr1.1:47703012-47703031 None:intergenic 40.0%
! ATTTTCTCCACACATCCACA+AGG - chr1.1:47704796-47704815 MS.gene051438:intron 40.0%
! CTACCTTAAGATCTTTGGAG+AGG - chr1.1:47704761-47704780 MS.gene051438:intron 40.0%
!! GCAAGAGTTCGATTTGTTAG+TGG - chr1.1:47703833-47703852 MS.gene051438:intron 40.0%
!! TTGATGCAGAAGCTGTTTTG+TGG - chr1.1:47702263-47702282 MS.gene051438:intron 40.0%
ACCTAGACAAAGGCCTTGAT+TGG + chr1.1:47703398-47703417 None:intergenic 45.0%
ATACTGTCTTGGAGCATGGT+GGG - chr1.1:47703601-47703620 MS.gene051438:intron 45.0%
ATCAGTTCGCAAAGAAGCTG+TGG + chr1.1:47704825-47704844 None:intergenic 45.0%
CAAGATACTGTCTTGGAGCA+TGG - chr1.1:47703597-47703616 MS.gene051438:intron 45.0%
CACTAAGCATCTCAATCGAG+CGG + chr1.1:47703569-47703588 None:intergenic 45.0%
CATATCAAGTCCCTGGAAAG+AGG + chr1.1:47703517-47703536 None:intergenic 45.0%
CCTAGACAAAGGCCTTGATT+GGG + chr1.1:47703397-47703416 None:intergenic 45.0%
CTAGCTGTTAAAAGTGGAGG+AGG - chr1.1:47705412-47705431 MS.gene051438:CDS 45.0%
CTCCCGTTAACCCAAAATAC+AGG + chr1.1:47703806-47703825 None:intergenic 45.0%
CTCGAAGGAATCGTTGTTGT+TGG + chr1.1:47702015-47702034 None:intergenic 45.0%
CTCTTTCCAGGGACTTGATA+TGG - chr1.1:47703515-47703534 MS.gene051438:intron 45.0%
CTGTTGCAGTACCGTTACTA+TGG - chr1.1:47705359-47705378 MS.gene051438:CDS 45.0%
CTTCGCCTAGCTGTTAAAAG+TGG - chr1.1:47705406-47705425 MS.gene051438:CDS 45.0%
GAGAGACTAAAGGATGAGAG+TGG - chr1.1:47704422-47704441 MS.gene051438:intron 45.0%
GAGAGTGGTTGAGAAGAAGA+TGG - chr1.1:47704437-47704456 MS.gene051438:intron 45.0%
GAGTGAGCTATCTGTGAAGT+TGG - chr1.1:47704362-47704381 MS.gene051438:intron 45.0%
GAGTGGTTGAGAAGAAGATG+GGG - chr1.1:47704439-47704458 MS.gene051438:intron 45.0%
GCTGGTAAAACACATGCTAG+GGG - chr1.1:47705154-47705173 MS.gene051438:intron 45.0%
GTTGCAGTACCGTTACTATG+GGG - chr1.1:47705361-47705380 MS.gene051438:CDS 45.0%
TAACGGTACTGCAACAGTCA+TGG + chr1.1:47705356-47705375 None:intergenic 45.0%
TCCTCTTCTGCTGAATCATC+GGG - chr1.1:47704250-47704269 MS.gene051438:intron 45.0%
TGAAAGGAAGTAGGAACCCA+AGG + chr1.1:47704045-47704064 None:intergenic 45.0%
TGGAGGAGGAATTGTAGAGA+AGG - chr1.1:47705426-47705445 MS.gene051438:CDS 45.0%
TGTGGTGCAAGATACTGTCT+TGG - chr1.1:47703590-47703609 MS.gene051438:intron 45.0%
TTCTCGAGTCTTCTGCAAAC+TGG + chr1.1:47704004-47704023 None:intergenic 45.0%
! AGGAGGAATGAGTTGCTTTG+GGG + chr1.1:47701992-47702011 None:intergenic 45.0%
! ATTCCTTCGAGTTCTTCCCT+TGG - chr1.1:47702024-47702043 MS.gene051438:intron 45.0%
! CAAAGAGTGCACCTAGACAA+AGG + chr1.1:47703408-47703427 None:intergenic 45.0%
! GAAGATGGGGAATGATTTGG+TGG - chr1.1:47704452-47704471 MS.gene051438:intron 45.0%
! GAAGGAATCGTTGTTGTTGG+AGG + chr1.1:47702012-47702031 None:intergenic 45.0%
! GAGGAGGAATGAGTTGCTTT+GGG + chr1.1:47701993-47702012 None:intergenic 45.0%
! GGAAAATCCTGGAAGTTGGT+TGG - chr1.1:47705103-47705122 MS.gene051438:intron 45.0%
!! ACTGACGGACTGATCCAAAT+CGG - chr1.1:47702659-47702678 MS.gene051438:intron 45.0%
!! CTCCTCCACTTTTAACAGCT+AGG + chr1.1:47705414-47705433 None:intergenic 45.0%
AAGAAGCTGTGGCTTCCTTG+TGG + chr1.1:47704814-47704833 None:intergenic 50.0%
ACAGGTGATTGCTGCAGAGA+AGG - chr1.1:47705300-47705319 MS.gene051438:CDS 50.0%
ACCCGATGATTCAGCAGAAG+AGG + chr1.1:47704254-47704273 None:intergenic 50.0%
ACGAAGAAGACGAGGATGAG+AGG + chr1.1:47701964-47701983 None:intergenic 50.0%
AGACGAGGATGAGAGGTAGA+AGG + chr1.1:47701957-47701976 None:intergenic 50.0%
CCCAATCAAGGCCTTTGTCT+AGG - chr1.1:47703394-47703413 MS.gene051438:intron 50.0%
CCTTGGTCCGACGATGATAA+CGG - chr1.1:47702041-47702060 MS.gene051438:intron 50.0%
CGCCTAGCTGTTAAAAGTGG+AGG - chr1.1:47705409-47705428 MS.gene051438:CDS 50.0%
CGTTATCATCGTCGGACCAA+GGG + chr1.1:47702043-47702062 None:intergenic 50.0%
CTAGTGTGCACAAGTGACAC+AGG + chr1.1:47704548-47704567 None:intergenic 50.0%
CTAGTGTGCAGAAGTGACGT+AGG - chr1.1:47703680-47703699 MS.gene051438:intron 50.0%
GAACCATGTTGCCTCCGATT+TGG + chr1.1:47702676-47702695 None:intergenic 50.0%
GAGAGGTAGAAGGAGCAACA+GGG + chr1.1:47701947-47701966 None:intergenic 50.0%
GAGCGAACCGTTATCATCGT+CGG + chr1.1:47702051-47702070 None:intergenic 50.0%
GATACTGTCTTGGAGCATGG+TGG - chr1.1:47703600-47703619 MS.gene051438:intron 50.0%
GATCCAAATCGGAGGCAACA+TGG - chr1.1:47702670-47702689 MS.gene051438:intron 50.0%
GATTTGGATCAGTCCGTCAG+TGG + chr1.1:47702660-47702679 None:intergenic 50.0%
GGAGGAGGAATGAGTTGCTT+TGG + chr1.1:47701994-47702013 None:intergenic 50.0%
TACTGTCTTGGAGCATGGTG+GGG - chr1.1:47703602-47703621 MS.gene051438:intron 50.0%
TGAGAGGTAGAAGGAGCAAC+AGG + chr1.1:47701948-47701967 None:intergenic 50.0%
TTGGGTTAACGGGAGCAAGA+GGG - chr1.1:47703811-47703830 MS.gene051438:intron 50.0%
! GGAATCGTTGTTGTTGGAGG+AGG + chr1.1:47702009-47702028 None:intergenic 50.0%
! GGAGGAATGAGTTGCTTTGG+GGG + chr1.1:47701991-47702010 None:intergenic 50.0%
! GGCAGACGACTCTGCATTTT+TGG - chr1.1:47703537-47703556 MS.gene051438:intron 50.0%
! TTTGGGTTAACGGGAGCAAG+AGG - chr1.1:47703810-47703829 MS.gene051438:intron 50.0%
ACTCAACGACTCCGAAGGGT+AGG + chr1.1:47704346-47704365 None:intergenic 55.0%
AGCTCACTCAACGACTCCGA+AGG + chr1.1:47704351-47704370 None:intergenic 55.0%
CAGTCCGTCAGTGGTGAAGA+AGG + chr1.1:47702651-47702670 None:intergenic 55.0%
CCGTTATCATCGTCGGACCA+AGG + chr1.1:47702044-47702063 None:intergenic 55.0%
GCTCACTCAACGACTCCGAA+GGG + chr1.1:47704350-47704369 None:intergenic 55.0%
GGACCAAGGGAAGAACTCGA+AGG + chr1.1:47702030-47702049 None:intergenic 55.0%
GGAGGAACGCCCCATAGTAA+CGG + chr1.1:47705373-47705392 None:intergenic 55.0%
GGGGAGAAACGAAGAAGACG+AGG + chr1.1:47701972-47701991 None:intergenic 55.0%
GTCTGCCCATATCAAGTCCC+TGG + chr1.1:47703524-47703543 None:intergenic 55.0%
GTGGCTTCCTTGTGGATGTG+TGG + chr1.1:47704806-47704825 None:intergenic 55.0%
GTTCAGTGGAGCCTACCCTT+CGG - chr1.1:47704332-47704351 MS.gene051438:intron 55.0%
TCAGAAGACTTGACGCGACG+AGG + chr1.1:47702698-47702717 None:intergenic 55.0%
TGGAAGAGGGCGAAACCACT+CGG - chr1.1:47702994-47703013 MS.gene051438:intron 55.0%
! AGGCGAAGTGTCTCAGAAGC+TGG + chr1.1:47705394-47705413 None:intergenic 55.0%
! CGAAGTGTCTCAGAAGCTGG+AGG + chr1.1:47705391-47705410 None:intergenic 55.0%
!! GACGGACTGATCCAAATCGG+AGG - chr1.1:47702662-47702681 MS.gene051438:intron 55.0%
GCTGCAGAGAAGGCAAGCAG+AGG - chr1.1:47705310-47705329 MS.gene051438:CDS 60.0%
! TGTCTTGGAGCATGGTGGGG+AGG - chr1.1:47703605-47703624 MS.gene051438:intron 60.0%
! TTGGAGCATGGTGGGGAGGT+AGG - chr1.1:47703609-47703628 MS.gene051438:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 47701840 47705474 47701840 ID=MS.gene051438
chr1.1 mRNA 47701840 47705474 47701840 ID=MS.gene051438.t1;Parent=MS.gene051438
chr1.1 exon 47705252 47705474 47705252 ID=MS.gene051438.t1.exon1;Parent=MS.gene051438.t1
chr1.1 CDS 47705252 47705474 47705252 ID=cds.MS.gene051438.t1;Parent=MS.gene051438.t1
chr1.1 exon 47704596 47704696 47704596 ID=MS.gene051438.t1.exon2;Parent=MS.gene051438.t1
chr1.1 CDS 47704596 47704696 47704596 ID=cds.MS.gene051438.t1;Parent=MS.gene051438.t1
chr1.1 exon 47703870 47703983 47703870 ID=MS.gene051438.t1.exon3;Parent=MS.gene051438.t1
chr1.1 CDS 47703870 47703983 47703870 ID=cds.MS.gene051438.t1;Parent=MS.gene051438.t1
chr1.1 exon 47703688 47703789 47703688 ID=MS.gene051438.t1.exon4;Parent=MS.gene051438.t1
chr1.1 CDS 47703688 47703789 47703688 ID=cds.MS.gene051438.t1;Parent=MS.gene051438.t1
chr1.1 exon 47701840 47702010 47701840 ID=MS.gene051438.t1.exon5;Parent=MS.gene051438.t1
chr1.1 CDS 47701840 47702010 47701840 ID=cds.MS.gene051438.t1;Parent=MS.gene051438.t1
Gene Sequence

>MS.gene051438

ATGGCAGAAACTTCAACCCTATTCAGATTCAGATTCTCTTCTCCACCATTCAATTCCATCATTCATCGTTCTTCCAAATCTTTCTCATTCAACAACAACTCTTTCCCTGTTGCTCCTTCTACCTCTCATCCTCGTCTTCTTCGTTTCTCCCCCAAAGCAACTCATTCCTCCTCCAACAACAACGATTCCTTCGAGTTCTTCCCTTGGTCCGACGATGATAACGGTTCGCTCTTCAATTTCATATTCAAGCTGATTTCTTTTTGTGTTTTTGTCTTTCTTGATTTTGTGTGCCACACGTTAAATTCAAAGATTAGGGTTCTTTGATCAATCTAAATTTGAGCTCAGTATACGTTTATCGTCTTTAATTAATTTGCATGTATAGTGTGGCTTGTATTGATTATGATGATTATTAAAAAAGTGATTTTGATGCAGAAGCTGTTTTGTGGAAATCACTTTTTGTAAAAATGACTTTTATGAGAAGCTAATCAAAACTGCTTCTTGCTTCTCATTTGAAGCACTTTTTAGGAAAGAGAATTTGTTGCAAAAAACTGCTTGAGGAATATATTTTGTGTATACATTTTGATGCTTTTTATAATTTAAAGAATGGTGTATCTTACTTTATCATCCAGTTAAAATGATTTTATCTGAAAGTCTGAATTTTGGGGAAATTGTGTTGGCTTTCATGTGTACGAGATTTATTTGCGTTTTTCATGGATTGAGAATTATGTCATATAAATTATTCTGAGTTTGTTTCATTTGTGTTTGTGACTTCTCACAGAAATTCAATGGGTTTCTCAGGACAAATTTACCTTCTTCACCACTGACGGACTGATCCAAATCGGAGGCAACATGGTTCCTCGTCGCGTCAAGTCTTCTGATGTATGATTTTATCATTCAATTCTTTCCTACTGATAGTTTTTTTTATGTATAGATTGCATTGCATGTACCTTTTTGCTACATTGCAACAGTTATCTTTTGTCAGGAATCTACGATCCCAAAATCTTTACTTAAAATAAAATGGAGAAGAACCAGCTGCTGAGATTTTTATTGTTATCTTTAATTAATCTTTTCAAATTTCATACACCAAGCTCCTTTTGTATTCAATTGAAGAAAATACATGTGCACCCAAAACATATGTTGAAATTTAACTTTATTGGAAGAGGGCGAAACCACTCGGATGCTTTGATATTGTGTTGAGAATTTAGCTAGCTTAAAAACTAAAGCTGTTATTGGTGATTATAAGGTTTTAATTATGTACTCGTTCTTTTTGGTATATTGCGTGCTGTAACAGAGATTTAGACTCCTTAGTCTTCCATGTAGAACAATTGGCATCATATCATAGAATCAGCTTTTAACTTTTAAGGTCAAGATACAGTATGCATTTCTTTTGAATCTTTCTCATGTTTGAAGTCTGAACCATCTTATTGTTTAAATCCATTTCAATGTCAGAGATTCTTTTAGATTAGCTAAGTAGGTTCTCATGTTTCACAGAAGCAAGGGAAATCCCAAACTGCTAAAAAATATCAGCGGTATCAAGAGAGCAACTACATGGATCCCAATCAAGGCCTTTGTCTAGGTGCACTCTTTGATATTGCAGCTACAAATGTAAGTACTTATTCTGTTGATTAAACATCCTTTATGAGTTATCGTTTGCTGTCTTATAAATTTGAATTTCCTCTTTCCAGGGACTTGATATGGGCAGACGACTCTGCATTTTTGGTTTCTGCCGCTCGATTGAGATGCTTAGTGATGTGGTGCAAGATACTGTCTTGGAGCATGGTGGGGAGGTAGGCGCTACATACTAATCATTTTTCTTTTAGCTATAAAACAATGGCTAATTCTAGTGTGCAGAAGTGACGTAGGTTGTGTACCATGCACAACATTTTACCACCACTAAATAAACAATCCCACTTTGATTTGATGCTACACGTGCTCGATTGAGATGCACAGCGTTTTAATGAAACCTGTATTTTGGGTTAACGGGAGCAAGAGGGCAAGAGTTCGATTTGTTAGTGGTTTGAGCTTGTTGTTTAATTAGGCCACATATGCTAATTGATGTTCTACAACTTATTCTATCATTTTTATTCTGTTTCCATTAGAAGAACTATTTATCTGTTCTCTTTTCTCTTCGTATCATCACGTAACACAACTACTACATCTTCCAGTTTGCAGAAGACTCGAGAAAATTAAACAAACTCTGATCCTTGGGTTCCTACTTCCTTTCACAATTTCATTATGTTTTGCATCTTCTACCTCGTCCAATTTATCATAACCTTTAGACCCTCATAATACTAAGCTAGACCAACTTTCTGACTCACACAATGAGGTTTCCCATGCACTTTTCTACGAAATCACTAAAATTTTAGGTTCTGAAATCATAATCACGTATCATTCCTCATCTGGTTTCAATTCCTCTTCTGCTGAATCATCGGGTTGTGATCCGAATTTGTGCTGAAATGTAAATTTTTGTTTTCTGGGATTGTGCATTTTTGGTTCAGTGGAGCCTACCCTTCGGAGTCGTTGAGTGAGCTATCTGTGAAGTTGGGTTTATATCATCAATTGGAGATGTGGTTATGTAACTGGAGAGACTAAAGGATGAGAGTGGTTGAGAAGAAGATGGGGAATGATTTGGTGGATAGAGTATAACATAAAATCTGGTGGGATTGTTTATCTAGTGATAGAAAAATGTGGTGCATGGTACTAAACCTGTGTCACTTGTGCACACTAGAATTAGCGTAATTTTTTTTTGGCAAAGCCAGAATTAGCCTAAAATAATATGTCCTAAGCCTTACTATGTTGAAAACATTTTAGTCACAGCTGCAAACATTGTTAGAATTTCTTTAGATGTTCTGCTTTTAGAACATTCAAAGGACAATCTTAAAAGAATGATGCTACACAAAAAAACTAGGGATACCAAAACACTACCTTAAGATCTTTGGAGAGGGTAACATCAAAAATTTTCTCCACACATCCACAAGGAAGCCACAGCTTCTTTGCGAACTGATTGCCTTTATTTGCTGTTCCAGCAAACCTAGCATGTTAAACTTACATCTTTTAATATACCAGTTCTTCAGGTCAATTTCCAATTGTTTAGGATCTTGTGAAATTAAGTAATTAGTTACCCCATTACAGGAGTTTGAATTATGAAACCATTCATTCACCTGCAATTGAACAATCTTCATAACTGTATTTTGCCTATTTTCCCTAGCTAAGTATCTTAATATTAATAAGTAGCTGGAACTTTTATGGGTAATAACATGTTTGGAAAATCCTGGAAGTTGGTTGGTACTTATTAGCAGCTATTAAAGGGTAATGCTGGTAAAACACATGCTAGGGGAAGCTTTTACTTAGCAACTTTTATGTTGCTGTGTCCAATATTTAGATTTTGTTTCATTCACTTTTTCTGTTATCATGTGTCAACCTAAATTCTGTGACCATTAGAGCTAATTTTATATGGCACACAGGTGATTGCTGCAGAGAAGGCAAGCAGAGGTGATTTGCATGAAAAGCTAACCATGACTGTTGCAGTACCGTTACTATGGGGCGTTCCTCCAGCTTCTGAGACACTTCGCCTAGCTGTTAAAAGTGGAGGAGGAATTGTAGAGAAGGTCTATTGGCAATTCGACTTTCTGTAG

Protein sequence

>MS.gene051438.t1

MAETSTLFRFRFSSPPFNSIIHRSSKSFSFNNNSFPVAPSTSHPRLLRFSPKATHSSSNNNDSFEFFPWSDDDNEIQWVSQDKFTFFTTDGLIQIGGNMVPRRVKSSDKQGKSQTAKKYQRYQESNYMDPNQGLCLGALFDIAATNGLDMGRRLCIFGFCRSIEMLSDVVQDTVLEHGGEVIAAEKASRGDLHEKLTMTVAVPLLWGVPPASETLRLAVKSGGGIVEKVYWQFDFL