Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22839.t1 | XP_003626514.1 | 96.6 | 292 | 10 | 0 | 9 | 300 | 2 | 293 | 4.30E-152 | 547.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22839.t1 | Q8S8M5 | 59.1 | 298 | 110 | 4 | 4 | 300 | 12 | 298 | 4.5e-86 | 319.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22839.t1 | G7L308 | 96.6 | 292 | 10 | 0 | 9 | 300 | 2 | 293 | 3.1e-152 | 547.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050599 | MS.gene22839 | 0.98344 | 9.52E-158 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22839 | MS.gene021449 | PPI |
| MS.gene31641 | MS.gene22839 | PPI |
| MS.gene22839 | MS.gene013576 | PPI |
| MS.gene22839 | MS.gene06902 | PPI |
| MS.gene22839 | MS.gene059163 | PPI |
| MS.gene22839 | MS.gene057119 | PPI |
| MS.gene06693 | MS.gene22839 | PPI |
| MS.gene059164 | MS.gene22839 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22839.t1 | MTR_7g116710 | 96.575 | 292 | 10 | 0 | 9 | 300 | 2 | 293 | 0.0 | 589 |
| MS.gene22839.t1 | MTR_8g028410 | 70.034 | 297 | 88 | 1 | 4 | 300 | 15 | 310 | 3.72e-149 | 421 |
| MS.gene22839.t1 | MTR_8g028410 | 74.390 | 246 | 62 | 1 | 4 | 249 | 15 | 259 | 1.13e-130 | 373 |
| MS.gene22839.t1 | MTR_8g028410 | 77.885 | 208 | 45 | 1 | 4 | 211 | 15 | 221 | 1.60e-116 | 335 |
| MS.gene22839.t1 | MTR_8g028410 | 83.060 | 183 | 31 | 0 | 4 | 186 | 15 | 197 | 6.81e-111 | 320 |
| MS.gene22839.t1 | MTR_1g007880 | 51.515 | 132 | 64 | 0 | 3 | 134 | 12 | 143 | 4.38e-41 | 145 |
| MS.gene22839.t1 | MTR_1g007880 | 51.515 | 132 | 64 | 0 | 3 | 134 | 31 | 162 | 8.28e-41 | 145 |
| MS.gene22839.t1 | MTR_3g091760 | 49.618 | 131 | 66 | 0 | 4 | 134 | 16 | 146 | 2.17e-38 | 136 |
| MS.gene22839.t1 | MTR_3g091760 | 49.618 | 131 | 66 | 0 | 4 | 134 | 16 | 146 | 3.82e-38 | 137 |
| MS.gene22839.t1 | MTR_6g087680 | 39.516 | 124 | 74 | 1 | 9 | 132 | 16 | 138 | 4.79e-25 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22839.t1 | AT2G46225 | 59.060 | 298 | 110 | 4 | 4 | 300 | 12 | 298 | 3.37e-119 | 344 |
| MS.gene22839.t1 | AT2G46225 | 53.799 | 329 | 109 | 5 | 4 | 300 | 12 | 329 | 6.12e-114 | 332 |
| MS.gene22839.t1 | AT2G46225 | 57.047 | 298 | 104 | 5 | 4 | 300 | 12 | 286 | 1.29e-109 | 320 |
| MS.gene22839.t1 | AT3G49290 | 52.672 | 131 | 62 | 0 | 4 | 134 | 7 | 137 | 2.67e-41 | 145 |
| MS.gene22839.t1 | AT3G49290 | 52.672 | 131 | 62 | 0 | 4 | 134 | 7 | 137 | 2.67e-41 | 145 |
| MS.gene22839.t1 | AT5G24310 | 32.993 | 294 | 183 | 7 | 4 | 293 | 13 | 296 | 7.30e-40 | 141 |
| MS.gene22839.t1 | AT5G24310 | 48.872 | 133 | 68 | 0 | 4 | 136 | 7 | 139 | 3.72e-39 | 137 |
| MS.gene22839.t1 | AT5G24310 | 49.242 | 132 | 67 | 0 | 4 | 135 | 7 | 138 | 6.39e-39 | 139 |
| MS.gene22839.t1 | AT5G24310 | 49.242 | 132 | 67 | 0 | 4 | 135 | 13 | 144 | 7.02e-39 | 139 |
| MS.gene22839.t1 | AT5G42030 | 46.875 | 128 | 68 | 0 | 7 | 134 | 17 | 144 | 2.12e-35 | 127 |
| MS.gene22839.t1 | AT5G42030 | 46.875 | 128 | 68 | 0 | 7 | 134 | 17 | 144 | 3.12e-35 | 129 |
| MS.gene22839.t1 | AT5G42030 | 46.875 | 128 | 68 | 0 | 7 | 134 | 17 | 144 | 8.78e-34 | 126 |
| MS.gene22839.t1 | AT5G42030 | 44.578 | 83 | 46 | 0 | 52 | 134 | 15 | 97 | 1.44e-18 | 83.2 |
Find 51 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGGTTGAGGACGATTTC+TGG | 0.223483 | 7.4:+1536943 | None:intergenic |
| CTGTCTGCAGGTTGCATTAG+AGG | 0.260105 | 7.4:-1535526 | MS.gene22839:intron |
| TTCAGACCATTGACAACATT+TGG | 0.289027 | 7.4:-1535501 | MS.gene22839:CDS |
| GCTAGATTCGATCAATAAAA+AGG | 0.306397 | 7.4:-1537017 | MS.gene22839:intron |
| GAGCTTTGTCTTCGCCCTTC+AGG | 0.315784 | 7.4:-1538696 | MS.gene22839:intron |
| CCTCTTTGTTTGTGTATACT+TGG | 0.350722 | 7.4:+1537206 | None:intergenic |
| AAGAAGATCAGTTAACTTGC+AGG | 0.369447 | 7.4:+1537391 | None:intergenic |
| GTTAATGCTGTTGATCATCT+TGG | 0.373843 | 7.4:-1537422 | MS.gene22839:CDS |
| TCGAACAACCATGTACAAAA+TGG | 0.376203 | 7.4:-1535790 | MS.gene22839:CDS |
| CAAAATGGAGTGCCTACTTC+TGG | 0.376361 | 7.4:-1535775 | MS.gene22839:CDS |
| GTCCTGTGACACCGAGTGTT+TGG | 0.383262 | 7.4:+1535743 | None:intergenic |
| TCCTGTGACACCGAGTGTTT+GGG | 0.410823 | 7.4:+1535744 | None:intergenic |
| GTGGAAAACTCCAGTGGTCT+TGG | 0.420567 | 7.4:+1536554 | None:intergenic |
| TTAATGCTGTTGATCATCTT+GGG | 0.424125 | 7.4:-1537421 | MS.gene22839:CDS |
| TTTGCATCAGTCTGTTTGTA+TGG | 0.428398 | 7.4:+1536983 | None:intergenic |
| GAAGATCTCTACTCTAAATC+AGG | 0.431053 | 7.4:-1537333 | MS.gene22839:intron |
| TCAGACCATTGACAACATTT+GGG | 0.437041 | 7.4:-1535500 | MS.gene22839:CDS |
| GACATACGACGAGGTTTCAA+TGG | 0.439764 | 7.4:-1538729 | MS.gene22839:CDS |
| AAATTCTCTGCCAAGACCAC+TGG | 0.477014 | 7.4:-1536564 | MS.gene22839:CDS |
| ACACAAACAAAGAGGGTGTT+CGG | 0.491272 | 7.4:-1537198 | MS.gene22839:CDS |
| CAGAATAGAGTTGAGGCCTC+AGG | 0.496323 | 7.4:+1538185 | None:intergenic |
| ACCCAAACACTCGGTGTCAC+AGG | 0.507227 | 7.4:-1535745 | MS.gene22839:CDS |
| TCTTCTTGAGCAGCAAACAT+TGG | 0.515387 | 7.4:-1537375 | MS.gene22839:CDS |
| AGAAATCGTCCTCAACCTTC+AGG | 0.517750 | 7.4:-1536941 | MS.gene22839:intron |
| AAGGACCCAAATGTTGTCAA+TGG | 0.520330 | 7.4:+1535495 | None:intergenic |
| TCAACAACTACAAACCTGTA+AGG | 0.532124 | 7.4:+1536532 | None:intergenic |
| AACACTCGGTGTCACAGGAC+GGG | 0.539319 | 7.4:-1535740 | MS.gene22839:intron |
| AGTAGAGATCTTCAAGTCCA+TGG | 0.540579 | 7.4:+1537343 | None:intergenic |
| GGTGCTGCCACCCAAACACT+CGG | 0.550242 | 7.4:-1535754 | MS.gene22839:CDS |
| ATGTAGTGCTTGTGATGTCT+AGG | 0.552043 | 7.4:+1537151 | None:intergenic |
| TGTTCGGCAACAGCAGCTGT+TGG | 0.553854 | 7.4:-1537182 | MS.gene22839:CDS |
| ATGCACATTTCGATTGTCAA+AGG | 0.568129 | 7.4:+1535476 | None:intergenic |
| TTCAGGAACTTAAGAACCTG+AGG | 0.571860 | 7.4:-1538201 | MS.gene22839:intron |
| AGATCTGCAAAATTGAGAGC+CGG | 0.575017 | 7.4:-1535393 | MS.gene22839:CDS |
| CATAGAAATAGAGATGGAGT+TGG | 0.578860 | 7.4:-1538756 | None:intergenic |
| ACATTTCTTTCTGATCACTA+CGG | 0.579231 | 7.4:+1538134 | None:intergenic |
| CCAAGTATACACAAACAAAG+AGG | 0.582927 | 7.4:-1537206 | MS.gene22839:CDS |
| ACATGGTTGTTCGATGCTGA+AGG | 0.589188 | 7.4:+1535799 | None:intergenic |
| AACATTGGATGTTTCAACCA+TGG | 0.594116 | 7.4:-1537360 | MS.gene22839:CDS |
| AGCCACGCACCTGAAGGTTG+AGG | 0.594725 | 7.4:+1536932 | None:intergenic |
| TGGGTGGCAGCACCAGAAGT+AGG | 0.602739 | 7.4:+1535763 | None:intergenic |
| AAACACTCGGTGTCACAGGA+CGG | 0.607093 | 7.4:-1535741 | MS.gene22839:CDS |
| ACAACTACAAACCTGTAAGG+TGG | 0.621109 | 7.4:+1536535 | None:intergenic |
| AGGTATTTATGAGACAGAGC+CGG | 0.627499 | 7.4:+1535374 | None:intergenic |
| CAGATAATGAAGAGATTACA+CGG | 0.636309 | 7.4:-1535828 | MS.gene22839:CDS |
| CAAGTATACACAAACAAAGA+GGG | 0.643568 | 7.4:-1537205 | MS.gene22839:CDS |
| ATGAAGGTGAGGTACCTGAA+GGG | 0.664165 | 7.4:+1538682 | None:intergenic |
| TCTGCAGCAGAATAGAGTTG+AGG | 0.670021 | 7.4:+1538178 | None:intergenic |
| TGTGACACCGAGTGTTTGGG+TGG | 0.676551 | 7.4:+1535747 | None:intergenic |
| TGTAAGGTGGAAAACTCCAG+TGG | 0.700267 | 7.4:+1536548 | None:intergenic |
| GTTGGCAATGACATACGACG+AGG | 0.763516 | 7.4:-1538738 | MS.gene22839:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATTTACTCTATAAA+AGG | + | chr7.4:1537744-1537763 | None:intergenic | 10.0% |
| !! | AATATATTTACTCTATAAAA+GGG | + | chr7.4:1537743-1537762 | None:intergenic | 10.0% |
| !!! | AATTAAATTTTGAATCTTGT+TGG | - | chr7.4:1535582-1535601 | MS.gene22839:intron | 15.0% |
| !!! | ATGTATATTTTTATGCTTTT+AGG | - | chr7.4:1536219-1536238 | MS.gene22839:intron | 15.0% |
| !!! | ATTTGAGTTAGAATAAAAAT+AGG | + | chr7.4:1535494-1535513 | None:intergenic | 15.0% |
| !! | AAAAAAAAGGTTGAAAAAAG+GGG | + | chr7.4:1536071-1536090 | None:intergenic | 20.0% |
| !! | ATCAAATAATTCAGTTCAAT+TGG | - | chr7.4:1538218-1538237 | MS.gene22839:intron | 20.0% |
| !! | CAAAAAAAAGGTTGAAAAAA+GGG | + | chr7.4:1536072-1536091 | None:intergenic | 20.0% |
| !! | TCAAATAATTCAGTTCAATT+GGG | - | chr7.4:1538219-1538238 | MS.gene22839:intron | 20.0% |
| !! | TTCTTAAAATATTGTCTCAA+TGG | - | chr7.4:1536471-1536490 | MS.gene22839:intron | 20.0% |
| !! | TTGATTATTTCCCAAAAAAA+AGG | + | chr7.4:1536084-1536103 | None:intergenic | 20.0% |
| !!! | AAAAGCAAGTTTTTAATTTG+AGG | - | chr7.4:1537413-1537432 | MS.gene22839:CDS | 20.0% |
| !!! | AACTAAGCTATTCTTTTTAT+AGG | + | chr7.4:1538266-1538285 | None:intergenic | 20.0% |
| !!! | ACTAAGCTATTCTTTTTATA+GGG | + | chr7.4:1538265-1538284 | None:intergenic | 20.0% |
| !!! | AGACTTTACTTATCTTTTTA+CGG | - | chr7.4:1535646-1535665 | MS.gene22839:intron | 20.0% |
| !!! | CTTTTTTCAACCTTTTTTTT+GGG | - | chr7.4:1536071-1536090 | MS.gene22839:intron | 20.0% |
| !!! | TTGACTATTTTATTAAAGCA+TGG | + | chr7.4:1538444-1538463 | None:intergenic | 20.0% |
| !!! | TTTTAGTTTGTTGTTTTAGA+AGG | - | chr7.4:1536036-1536055 | MS.gene22839:intron | 20.0% |
| ! | AAGCACTAAAAAAGAAGAAA+TGG | + | chr7.4:1538538-1538557 | None:intergenic | 25.0% |
| ! | AAGTCAAATGCTTGATTAAT+TGG | + | chr7.4:1535519-1535538 | None:intergenic | 25.0% |
| ! | AATTTAGCCATAACATTAAC+TGG | + | chr7.4:1536165-1536184 | None:intergenic | 25.0% |
| ! | AGAAATGTAAGATGTTTGAT+TGG | - | chr7.4:1536004-1536023 | MS.gene22839:intron | 25.0% |
| ! | AGGTCAAATACACTAATTAT+CGG | + | chr7.4:1536628-1536647 | None:intergenic | 25.0% |
| ! | ATAAACAATAATGCTGATAC+CGG | + | chr7.4:1536427-1536446 | None:intergenic | 25.0% |
| ! | ATAGGGAAAAAAACAAACAT+TGG | + | chr7.4:1538248-1538267 | None:intergenic | 25.0% |
| ! | CAATTATTATGAGATGAGTT+GGG | + | chr7.4:1535802-1535821 | None:intergenic | 25.0% |
| ! | CCAAAAAAAAGGTTGAAAAA+AGG | + | chr7.4:1536073-1536092 | None:intergenic | 25.0% |
| ! | CCAAAACAAATATATACAAG+CGG | + | chr7.4:1538154-1538173 | None:intergenic | 25.0% |
| ! | TAAAAGATAGATCTGAATGA+AGG | + | chr7.4:1535460-1535479 | None:intergenic | 25.0% |
| ! | TAACAACAACAAATGTTAGT+TGG | + | chr7.4:1536371-1536390 | None:intergenic | 25.0% |
| ! | TAATAGAAATACCTAAAGAG+TGG | + | chr7.4:1536199-1536218 | None:intergenic | 25.0% |
| ! | TCAATTATTATGAGATGAGT+TGG | + | chr7.4:1535803-1535822 | None:intergenic | 25.0% |
| !! | GTATTCTAATGATCAACTTT+TGG | - | chr7.4:1537982-1538001 | MS.gene22839:intron | 25.0% |
| !! | TCATCTTTCTCAATTGTTTT+GGG | - | chr7.4:1538112-1538131 | MS.gene22839:intron | 25.0% |
| !! | TTTTTCTCTTTTACCATTGA+TGG | - | chr7.4:1537461-1537480 | MS.gene22839:CDS | 25.0% |
| !!! | AACAGAACAGTTGATTTTAT+CGG | - | chr7.4:1536130-1536149 | MS.gene22839:intron | 25.0% |
| !!! | AGGTTTGTTGTTATTTCTTT+TGG | - | chr7.4:1537914-1537933 | MS.gene22839:intron | 25.0% |
| !!! | CCTTTTTTCAACCTTTTTTT+TGG | - | chr7.4:1536070-1536089 | MS.gene22839:intron | 25.0% |
| !!! | GGTTTGTTGTTATTTCTTTT+GGG | - | chr7.4:1537915-1537934 | MS.gene22839:intron | 25.0% |
| AAAACAAAATTCACAGTCTG+TGG | + | chr7.4:1537049-1537068 | None:intergenic | 30.0% | |
| AAATTTGAACAGTCTGAAAG+TGG | - | chr7.4:1536332-1536351 | MS.gene22839:intron | 30.0% | |
| AACACAATCAACAAATACCA+AGG | + | chr7.4:1537627-1537646 | None:intergenic | 30.0% | |
| AACTAGTCACACAAATTTCA+AGG | + | chr7.4:1536556-1536575 | None:intergenic | 30.0% | |
| AACTCGAAATGATGAAAAGA+TGG | + | chr7.4:1537793-1537812 | None:intergenic | 30.0% | |
| ACATTTCTTTCTGATCACTA+CGG | + | chr7.4:1535992-1536011 | None:intergenic | 30.0% | |
| ATTAAGAGTCAAGACTTCTT+TGG | - | chr7.4:1537958-1537977 | MS.gene22839:intron | 30.0% | |
| CAAGTATACACAAACAAAGA+GGG | - | chr7.4:1536918-1536937 | MS.gene22839:intron | 30.0% | |
| CAGATAATGAAGAGATTACA+CGG | - | chr7.4:1538295-1538314 | MS.gene22839:intron | 30.0% | |
| CTAAGTCGACCTTAAAAAAA+CGG | - | chr7.4:1537374-1537393 | MS.gene22839:CDS | 30.0% | |
| GAATGTGTATTGTTGTACTT+AGG | - | chr7.4:1537307-1537326 | MS.gene22839:intron | 30.0% | |
| GAGGAAACTAAATCATATCA+AGG | + | chr7.4:1537675-1537694 | None:intergenic | 30.0% | |
| GCTAGATTCGATCAATAAAA+AGG | - | chr7.4:1537106-1537125 | MS.gene22839:intron | 30.0% | |
| GGTTTCATTTGAAAAGTTTG+TGG | - | chr7.4:1535860-1535879 | MS.gene22839:intron | 30.0% | |
| TATACAAGCGGTGAATAAAA+CGG | + | chr7.4:1538142-1538161 | None:intergenic | 30.0% | |
| TGCAAACAATTGCGAAAAAT+GGG | + | chr7.4:1538483-1538502 | None:intergenic | 30.0% | |
| TGCAACAATAATACCATCAA+TGG | + | chr7.4:1537477-1537496 | None:intergenic | 30.0% | |
| TTAATGCTGTTGATCATCTT+GGG | - | chr7.4:1536702-1536721 | MS.gene22839:intron | 30.0% | |
| TTGTTGAATAATTGTGTCCT+TGG | - | chr7.4:1537607-1537626 | MS.gene22839:intron | 30.0% | |
| ! | AAATGTTAGTTGGTGTTCTT+CGG | + | chr7.4:1536361-1536380 | None:intergenic | 30.0% |
| ! | ATCAAGCATTTGACTTTAAG+TGG | - | chr7.4:1535523-1535542 | MS.gene22839:intron | 30.0% |
| ! | ATGAAAGAGTTTTTGCAACA+GGG | + | chr7.4:1537336-1537355 | None:intergenic | 30.0% |
| ! | CCGCTTGTATATATTTGTTT+TGG | - | chr7.4:1538151-1538170 | MS.gene22839:CDS | 30.0% |
| ! | GTCATCTTTCTCAATTGTTT+TGG | - | chr7.4:1538111-1538130 | MS.gene22839:intron | 30.0% |
| ! | TTTCTTTTGTACCACTCTTT+AGG | - | chr7.4:1536185-1536204 | MS.gene22839:intron | 30.0% |
| !! | ATCTTTTCATCATTTCGAGT+TGG | - | chr7.4:1537792-1537811 | MS.gene22839:intron | 30.0% |
| !! | CATCTTTCTCAATTGTTTTG+GGG | - | chr7.4:1538113-1538132 | MS.gene22839:intron | 30.0% |
| !! | GGTTTTCACTTCTTTGATTT+CGG | - | chr7.4:1537843-1537862 | MS.gene22839:intron | 30.0% |
| !! | GTTTTCACTTCTTTGATTTC+GGG | - | chr7.4:1537844-1537863 | MS.gene22839:intron | 30.0% |
| !! | TTTTCACTTCTTTGATTTCG+GGG | - | chr7.4:1537845-1537864 | MS.gene22839:intron | 30.0% |
| !!! | ATGTGAACTCCGTTTTTTTA+AGG | + | chr7.4:1537386-1537405 | None:intergenic | 30.0% |
| !!! | TAGTTATTTTGACAGCTTGT+GGG | - | chr7.4:1536571-1536590 | MS.gene22839:CDS | 30.0% |
| AACATTGGATGTTTCAACCA+TGG | - | chr7.4:1536763-1536782 | MS.gene22839:CDS | 35.0% | |
| AAGGGAATCCAAGAATCTTA+TGG | + | chr7.4:1537725-1537744 | None:intergenic | 35.0% | |
| AGGTAGCTAAATCACATTGA+CGG | + | chr7.4:1538073-1538092 | None:intergenic | 35.0% | |
| ATCAACTGTTCTGTTTGTAC+TGG | + | chr7.4:1536125-1536144 | None:intergenic | 35.0% | |
| ATGCACATTTCGATTGTCAA+AGG | + | chr7.4:1538650-1538669 | None:intergenic | 35.0% | |
| ATTAGTGTATTTGACCTGCA+TGG | - | chr7.4:1536631-1536650 | MS.gene22839:intron | 35.0% | |
| CACTTTGCCAGTTAATGTTA+TGG | - | chr7.4:1536155-1536174 | MS.gene22839:intron | 35.0% | |
| CATGTAAACTGTAGTTTGAG+GGG | - | chr7.4:1538005-1538024 | MS.gene22839:intron | 35.0% | |
| CCAAGTATACACAAACAAAG+AGG | - | chr7.4:1536917-1536936 | MS.gene22839:intron | 35.0% | |
| CTCTCAATCCATAAGATTCT+TGG | - | chr7.4:1537714-1537733 | MS.gene22839:intron | 35.0% | |
| CTGTTGCAAAAACTCTTTCA+TGG | - | chr7.4:1537335-1537354 | MS.gene22839:CDS | 35.0% | |
| GAAATCAGTAATAAGTGCTC+AGG | + | chr7.4:1536405-1536424 | None:intergenic | 35.0% | |
| GAAGATCTCTACTCTAAATC+AGG | - | chr7.4:1536790-1536809 | MS.gene22839:CDS | 35.0% | |
| GCATGTAAACTGTAGTTTGA+GGG | - | chr7.4:1538004-1538023 | MS.gene22839:intron | 35.0% | |
| GGAGAAAAGTTATAGCAGTT+AGG | + | chr7.4:1537011-1537030 | None:intergenic | 35.0% | |
| GGCATATCGTCATACTTAAA+AGG | - | chr7.4:1536516-1536535 | MS.gene22839:intron | 35.0% | |
| GTAATCTCTTCATTATCTGC+AGG | + | chr7.4:1538294-1538313 | None:intergenic | 35.0% | |
| GTGCAAACAATTGCGAAAAA+TGG | + | chr7.4:1538484-1538503 | None:intergenic | 35.0% | |
| GTTAATGCTGTTGATCATCT+TGG | - | chr7.4:1536701-1536720 | MS.gene22839:intron | 35.0% | |
| TCAACAACTACAAACCTGTA+AGG | + | chr7.4:1537594-1537613 | None:intergenic | 35.0% | |
| TCAGACCATTGACAACATTT+GGG | - | chr7.4:1538623-1538642 | MS.gene22839:intron | 35.0% | |
| TCCTGAAAAGACATAACACA+AGG | + | chr7.4:1535909-1535928 | None:intergenic | 35.0% | |
| TCGAACAACCATGTACAAAA+TGG | - | chr7.4:1538333-1538352 | MS.gene22839:intron | 35.0% | |
| TGTTAACCTCATGTTCTTGA+GGG | - | chr7.4:1535681-1535700 | MS.gene22839:intron | 35.0% | |
| TTCAGACCATTGACAACATT+TGG | - | chr7.4:1538622-1538641 | MS.gene22839:intron | 35.0% | |
| TTGTTAACCTCATGTTCTTG+AGG | - | chr7.4:1535680-1535699 | MS.gene22839:intron | 35.0% | |
| TTTGCATCAGTCTGTTTGTA+TGG | + | chr7.4:1537143-1537162 | None:intergenic | 35.0% | |
| ! | ATTTAGTTTCCTCAGACAGT+GGG | - | chr7.4:1537682-1537701 | MS.gene22839:intron | 35.0% |
| ! | CAAGAATCTTATGGATTGAG+AGG | + | chr7.4:1537716-1537735 | None:intergenic | 35.0% |
| ! | CATGAAAGAGTTTTTGCAAC+AGG | + | chr7.4:1537337-1537356 | None:intergenic | 35.0% |
| ! | CCTCTTTGTTTGTGTATACT+TGG | + | chr7.4:1536920-1536939 | None:intergenic | 35.0% |
| ! | CTGTGGTGTCAATATACTTA+TGG | + | chr7.4:1537032-1537051 | None:intergenic | 35.0% |
| ! | TCCTTGTGTTATGTCTTTTC+AGG | - | chr7.4:1535905-1535924 | MS.gene22839:intron | 35.0% |
| ! | TGAAAGAGTTTTTGCAACAG+GGG | + | chr7.4:1537335-1537354 | None:intergenic | 35.0% |
| ! | TTATTGATGATTCTGTCTGC+AGG | - | chr7.4:1538585-1538604 | MS.gene22839:intron | 35.0% |
| ! | TTGACGGATGAAAGAAAACA+AGG | + | chr7.4:1538057-1538076 | None:intergenic | 35.0% |
| !! | AAGAAGATCAGTTAACTTGC+AGG | + | chr7.4:1536735-1536754 | None:intergenic | 35.0% |
| !! | AGAGTGGACTAAACATATTG+AGG | - | chr7.4:1537894-1537913 | MS.gene22839:intron | 35.0% |
| !! | GAGCACTTATTACTGATTTC+CGG | - | chr7.4:1536405-1536424 | MS.gene22839:intron | 35.0% |
| !!! | CTAGTTATTTTGACAGCTTG+TGG | - | chr7.4:1536570-1536589 | MS.gene22839:CDS | 35.0% |
| !!! | CTTTGTTAGTTTTGCAAGAG+TGG | - | chr7.4:1537878-1537897 | MS.gene22839:intron | 35.0% |
| !!! | TTTTAATTTGAGGCTGCACA+TGG | - | chr7.4:1537423-1537442 | MS.gene22839:CDS | 35.0% |
| AAAACTAACCTTGCTGCAGT+TGG | - | chr7.4:1537822-1537841 | MS.gene22839:intron | 40.0% | |
| AAGAACACTGAAATCCATGC+AGG | + | chr7.4:1536648-1536667 | None:intergenic | 40.0% | |
| AAGGACCCAAATGTTGTCAA+TGG | + | chr7.4:1538631-1538650 | None:intergenic | 40.0% | |
| ACAACTACAAACCTGTAAGG+TGG | + | chr7.4:1537591-1537610 | None:intergenic | 40.0% | |
| ACATCTGCGAATCTAGTCTA+AGG | + | chr7.4:1538093-1538112 | None:intergenic | 40.0% | |
| AGATCTGCAAAATTGAGAGC+CGG | - | chr7.4:1538730-1538749 | MS.gene22839:CDS | 40.0% | |
| AGTAGAGATCTTCAAGTCCA+TGG | + | chr7.4:1536783-1536802 | None:intergenic | 40.0% | |
| ATGTAGTGCTTGTGATGTCT+AGG | + | chr7.4:1536975-1536994 | None:intergenic | 40.0% | |
| CTCAATGGTGAAGCGTAAAA+TGG | - | chr7.4:1536486-1536505 | MS.gene22839:intron | 40.0% | |
| GAAGCGTAAAATGGATGTTG+TGG | - | chr7.4:1536495-1536514 | MS.gene22839:intron | 40.0% | |
| GATAGATCTGAATGAAGGTG+AGG | + | chr7.4:1535455-1535474 | None:intergenic | 40.0% | |
| GGCATGTAAACTGTAGTTTG+AGG | - | chr7.4:1538003-1538022 | MS.gene22839:intron | 40.0% | |
| GTCTGCATATACTCAGAGAA+TGG | + | chr7.4:1535838-1535857 | None:intergenic | 40.0% | |
| TCTCTGAGTATATGCAGACT+GGG | - | chr7.4:1535839-1535858 | MS.gene22839:intron | 40.0% | |
| TCTTCTTGAGCAGCAAACAT+TGG | - | chr7.4:1536748-1536767 | MS.gene22839:CDS | 40.0% | |
| TTATAGCAGTTAGGCCTACT+TGG | + | chr7.4:1537002-1537021 | None:intergenic | 40.0% | |
| TTCAGGAACTTAAGAACCTG+AGG | - | chr7.4:1535922-1535941 | MS.gene22839:intron | 40.0% | |
| TTCCTAGGTGGAACAATTCT+TGG | + | chr7.4:1535764-1535783 | None:intergenic | 40.0% | |
| TTCTCTGAGTATATGCAGAC+TGG | - | chr7.4:1535838-1535857 | MS.gene22839:intron | 40.0% | |
| ! | AGCACTACATTTTGCCAAGT+AGG | - | chr7.4:1536985-1537004 | MS.gene22839:CDS | 40.0% |
| ! | GATTTAGTTTCCTCAGACAG+TGG | - | chr7.4:1537681-1537700 | MS.gene22839:intron | 40.0% |
| ! | TAGGCACTCCATTTTGTACA+TGG | + | chr7.4:1538344-1538363 | None:intergenic | 40.0% |
| ! | TTTAGTTTCCTCAGACAGTG+GGG | - | chr7.4:1537683-1537702 | MS.gene22839:intron | 40.0% |
| !! | ACACAAACAAAGAGGGTGTT+CGG | - | chr7.4:1536925-1536944 | MS.gene22839:intron | 40.0% |
| AAATTCTCTGCCAAGACCAC+TGG | - | chr7.4:1537559-1537578 | MS.gene22839:intron | 45.0% | |
| ACATGGTTGTTCGATGCTGA+AGG | + | chr7.4:1538327-1538346 | None:intergenic | 45.0% | |
| ACCACTTACCAACAAACCTG+AGG | + | chr7.4:1537267-1537286 | None:intergenic | 45.0% | |
| ACCTCATGTTCTTGAGGGAA+AGG | - | chr7.4:1535686-1535705 | MS.gene22839:intron | 45.0% | |
| AGAAATCGTCCTCAACCTTC+AGG | - | chr7.4:1537182-1537201 | MS.gene22839:CDS | 45.0% | |
| AGTGAAAACCAACTGCAGCA+AGG | + | chr7.4:1537833-1537852 | None:intergenic | 45.0% | |
| CACTTACCAACAAACCTGAG+GGG | + | chr7.4:1537265-1537284 | None:intergenic | 45.0% | |
| CCACTTACCAACAAACCTGA+GGG | + | chr7.4:1537266-1537285 | None:intergenic | 45.0% | |
| GACATACGACGAGGTTTCAA+TGG | - | chr7.4:1535394-1535413 | MS.gene22839:CDS | 45.0% | |
| GACCGAACTCTGGATTACTA+GGG | + | chr7.4:1535715-1535734 | None:intergenic | 45.0% | |
| GGTAGGGGAGAACATACATT+AGG | + | chr7.4:1537237-1537256 | None:intergenic | 45.0% | |
| GTCGTGAGGTAAGTATAGTC+TGG | - | chr7.4:1535732-1535751 | MS.gene22839:intron | 45.0% | |
| TAGAGACGTCGTGTAGAACT+AGG | - | chr7.4:1536828-1536847 | MS.gene22839:intron | 45.0% | |
| TCCTTTCCCTCAAGAACATG+AGG | + | chr7.4:1535690-1535709 | None:intergenic | 45.0% | |
| TCTGCAGCAGAATAGAGTTG+AGG | + | chr7.4:1535948-1535967 | None:intergenic | 45.0% | |
| TGAAGGTTGAGGACGATTTC+TGG | + | chr7.4:1537183-1537202 | None:intergenic | 45.0% | |
| TGCCCTAGTAATCCAGAGTT+CGG | - | chr7.4:1535710-1535729 | MS.gene22839:intron | 45.0% | |
| TGTAAGGTGGAAAACTCCAG+TGG | + | chr7.4:1537578-1537597 | None:intergenic | 45.0% | |
| TTAGTTTCCTCAGACAGTGG+GGG | - | chr7.4:1537684-1537703 | MS.gene22839:intron | 45.0% | |
| TTCCACCTAGGAATCGAACT+CGG | - | chr7.4:1535771-1535790 | MS.gene22839:CDS | 45.0% | |
| ! | AATGAAGGTGAGGTACCTGA+AGG | + | chr7.4:1535445-1535464 | None:intergenic | 45.0% |
| ! | ACTGGAGTTTTCCACCTTAC+AGG | - | chr7.4:1537577-1537596 | MS.gene22839:intron | 45.0% |
| ! | AGGTAAGTATAGTCTGGCTC+TGG | - | chr7.4:1535738-1535757 | MS.gene22839:intron | 45.0% |
| ! | ATGAAGGTGAGGTACCTGAA+GGG | + | chr7.4:1535444-1535463 | None:intergenic | 45.0% |
| ! | CAAAATGGAGTGCCTACTTC+TGG | - | chr7.4:1538348-1538367 | MS.gene22839:intron | 45.0% |
| ! | TTTTGCTGCGACTAGGAACA+TGG | + | chr7.4:1538681-1538700 | None:intergenic | 45.0% |
| !! | CATCCACTTTTGCAGAACCA+AGG | - | chr7.4:1537531-1537550 | MS.gene22839:intron | 45.0% |
| !! | TCAGGTTTGTTGGTAAGTGG+TGG | - | chr7.4:1537266-1537285 | MS.gene22839:intron | 45.0% |
| AGAACCCGAGTTCGATTCCT+AGG | + | chr7.4:1535779-1535798 | None:intergenic | 50.0% | |
| CAGAATAGAGTTGAGGCCTC+AGG | + | chr7.4:1535941-1535960 | None:intergenic | 50.0% | |
| CGACCGAACTCTGGATTACT+AGG | + | chr7.4:1535716-1535735 | None:intergenic | 50.0% | |
| CTGTCTGCAGGTTGCATTAG+AGG | - | chr7.4:1538597-1538616 | MS.gene22839:intron | 50.0% | |
| GGCCAAGAATTGTTCCACCT+AGG | - | chr7.4:1535759-1535778 | MS.gene22839:CDS | 50.0% | |
| GTGGAAAACTCCAGTGGTCT+TGG | + | chr7.4:1537572-1537591 | None:intergenic | 50.0% | |
| GTTGGCAATGACATACGACG+AGG | - | chr7.4:1535385-1535404 | MS.gene22839:CDS | 50.0% | |
| TAATCCAGAGTTCGGTCGTG+AGG | - | chr7.4:1535718-1535737 | MS.gene22839:intron | 50.0% | |
| TACCAACAAACCTGAGGGGT+GGG | + | chr7.4:1537261-1537280 | None:intergenic | 50.0% | |
| TCCACCTAGGAATCGAACTC+GGG | - | chr7.4:1535772-1535791 | MS.gene22839:CDS | 50.0% | |
| TCCTGTGACACCGAGTGTTT+GGG | + | chr7.4:1538382-1538401 | None:intergenic | 50.0% | |
| TTACCAACAAACCTGAGGGG+TGG | + | chr7.4:1537262-1537281 | None:intergenic | 50.0% | |
| ! | AGCACACTTTTGCTGCGACT+AGG | + | chr7.4:1538688-1538707 | None:intergenic | 50.0% |
| ! | GGCAGAGAATTTTGCGTCCT+TGG | + | chr7.4:1537551-1537570 | None:intergenic | 50.0% |
| !! | AAACACTCGGTGTCACAGGA+CGG | - | chr7.4:1538382-1538401 | MS.gene22839:intron | 50.0% |
| !! | CCCTCAGGTTTGTTGGTAAG+TGG | - | chr7.4:1537263-1537282 | MS.gene22839:intron | 50.0% |
| !! | CGTCCTTGGTTCTGCAAAAG+TGG | + | chr7.4:1537537-1537556 | None:intergenic | 50.0% |
| ACCAACAAACCTGAGGGGTG+GGG | + | chr7.4:1537260-1537279 | None:intergenic | 55.0% | |
| ACCCGAGTTCGATTCCTAGG+TGG | + | chr7.4:1535776-1535795 | None:intergenic | 55.0% | |
| CTTACCTCACGACCGAACTC+TGG | + | chr7.4:1535725-1535744 | None:intergenic | 55.0% | |
| GTCCTGTGACACCGAGTGTT+TGG | + | chr7.4:1538383-1538402 | None:intergenic | 55.0% | |
| TGTGACACCGAGTGTTTGGG+TGG | + | chr7.4:1538379-1538398 | None:intergenic | 55.0% | |
| TGTTCGGCAACAGCAGCTGT+TGG | - | chr7.4:1536941-1536960 | MS.gene22839:intron | 55.0% | |
| ! | GAGCTTTGTCTTCGCCCTTC+AGG | - | chr7.4:1535427-1535446 | MS.gene22839:CDS | 55.0% |
| !! | AACACTCGGTGTCACAGGAC+GGG | - | chr7.4:1538383-1538402 | MS.gene22839:intron | 55.0% |
| !! | ACCCAAACACTCGGTGTCAC+AGG | - | chr7.4:1538378-1538397 | MS.gene22839:intron | 55.0% |
| AGCCACGCACCTGAAGGTTG+AGG | + | chr7.4:1537194-1537213 | None:intergenic | 60.0% | |
| CAACAAACCTGAGGGGTGGG+GGG | + | chr7.4:1537258-1537277 | None:intergenic | 60.0% | |
| CAACCTTCAGGTGCGTGGCT+GGG | - | chr7.4:1537194-1537213 | MS.gene22839:CDS | 60.0% | |
| CCAACAAACCTGAGGGGTGG+GGG | + | chr7.4:1537259-1537278 | None:intergenic | 60.0% | |
| GTCCTCAACCTTCAGGTGCG+TGG | - | chr7.4:1537189-1537208 | MS.gene22839:CDS | 60.0% | |
| TCAACCTTCAGGTGCGTGGC+TGG | - | chr7.4:1537193-1537212 | MS.gene22839:CDS | 60.0% | |
| TGGGTGGCAGCACCAGAAGT+AGG | + | chr7.4:1538363-1538382 | None:intergenic | 60.0% | |
| TTTCCCAGCCACGCACCTGA+AGG | + | chr7.4:1537200-1537219 | None:intergenic | 60.0% | |
| ! | GGTGCTGCCACCCAAACACT+CGG | - | chr7.4:1538369-1538388 | MS.gene22839:intron | 60.0% |
| AAACCTGAGGGGTGGGGGGT+AGG | + | chr7.4:1537254-1537273 | None:intergenic | 65.0% | |
| AACCTGAGGGGTGGGGGGTA+GGG | + | chr7.4:1537253-1537272 | None:intergenic | 65.0% | |
| CCCCCACCCCTCAGGTTTGT+TGG | - | chr7.4:1537256-1537275 | MS.gene22839:intron | 65.0% | |
| GTCACAGCCCCCACTGTCTG+AGG | + | chr7.4:1537694-1537713 | None:intergenic | 65.0% | |
| ACCTGAGGGGTGGGGGGTAG+GGG | + | chr7.4:1537252-1537271 | None:intergenic | 70.0% | |
| TCCCCTACCCCCCACCCCTC+AGG | - | chr7.4:1537248-1537267 | MS.gene22839:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 1535380 | 1538765 | 1535380 | ID=MS.gene22839 |
| chr7.4 | mRNA | 1535380 | 1538765 | 1535380 | ID=MS.gene22839.t1;Parent=MS.gene22839 |
| chr7.4 | exon | 1538697 | 1538765 | 1538697 | ID=MS.gene22839.t1.exon1;Parent=MS.gene22839.t1 |
| chr7.4 | CDS | 1538697 | 1538765 | 1538697 | ID=cds.MS.gene22839.t1;Parent=MS.gene22839.t1 |
| chr7.4 | exon | 1538136 | 1538218 | 1538136 | ID=MS.gene22839.t1.exon2;Parent=MS.gene22839.t1 |
| chr7.4 | CDS | 1538136 | 1538218 | 1538136 | ID=cds.MS.gene22839.t1;Parent=MS.gene22839.t1 |
| chr7.4 | exon | 1537334 | 1537484 | 1537334 | ID=MS.gene22839.t1.exon3;Parent=MS.gene22839.t1 |
| chr7.4 | CDS | 1537334 | 1537484 | 1537334 | ID=cds.MS.gene22839.t1;Parent=MS.gene22839.t1 |
| chr7.4 | exon | 1537143 | 1537242 | 1537143 | ID=MS.gene22839.t1.exon4;Parent=MS.gene22839.t1 |
| chr7.4 | CDS | 1537143 | 1537242 | 1537143 | ID=cds.MS.gene22839.t1;Parent=MS.gene22839.t1 |
| chr7.4 | exon | 1536942 | 1537034 | 1536942 | ID=MS.gene22839.t1.exon5;Parent=MS.gene22839.t1 |
| chr7.4 | CDS | 1536942 | 1537034 | 1536942 | ID=cds.MS.gene22839.t1;Parent=MS.gene22839.t1 |
| chr7.4 | exon | 1536729 | 1536816 | 1536729 | ID=MS.gene22839.t1.exon6;Parent=MS.gene22839.t1 |
| chr7.4 | CDS | 1536729 | 1536816 | 1536729 | ID=cds.MS.gene22839.t1;Parent=MS.gene22839.t1 |
| chr7.4 | exon | 1536547 | 1536599 | 1536547 | ID=MS.gene22839.t1.exon7;Parent=MS.gene22839.t1 |
| chr7.4 | CDS | 1536547 | 1536599 | 1536547 | ID=cds.MS.gene22839.t1;Parent=MS.gene22839.t1 |
| chr7.4 | exon | 1535741 | 1535847 | 1535741 | ID=MS.gene22839.t1.exon8;Parent=MS.gene22839.t1 |
| chr7.4 | CDS | 1535741 | 1535847 | 1535741 | ID=cds.MS.gene22839.t1;Parent=MS.gene22839.t1 |
| chr7.4 | exon | 1535380 | 1535538 | 1535380 | ID=MS.gene22839.t1.exon9;Parent=MS.gene22839.t1 |
| chr7.4 | CDS | 1535380 | 1535538 | 1535380 | ID=cds.MS.gene22839.t1;Parent=MS.gene22839.t1 |
| Gene Sequence |
| Protein sequence |
