AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene22993

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22993.t1 MTR_7g108490 98.750 320 4 0 1 320 1 320 0.0 656
MS.gene22993.t1 MTR_7g108490 98.750 320 3 1 1 320 1 319 0.0 652
MS.gene22993.t1 MTR_1g080950 24.545 330 222 8 9 320 22 342 4.63e-22 95.9
MS.gene22993.t1 MTR_1g080950 24.545 330 222 8 9 320 58 378 5.77e-22 95.9
MS.gene22993.t1 MTR_7g115080 24.691 324 214 9 16 320 30 342 2.70e-20 90.5
MS.gene22993.t1 MTR_7g115080 24.691 324 214 9 16 320 43 355 3.10e-20 90.5
MS.gene22993.t1 MTR_7g115080 24.691 324 214 9 16 320 64 376 3.23e-20 90.9
MS.gene22993.t1 MTR_1g009600 28.649 185 116 6 137 317 148 320 1.02e-12 68.9
MS.gene22993.t1 MTR_4g063600 24.051 316 208 9 10 307 27 328 1.85e-12 67.4
MS.gene22993.t1 MTR_5g009160 24.633 341 209 11 17 317 6 338 1.13e-11 65.1
MS.gene22993.t1 MTR_4g063600 24.051 316 205 10 10 307 27 325 1.25e-11 65.1
MS.gene22993.t1 MTR_8g096880 24.058 345 214 12 14 317 5 342 4.43e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22993.t1 AT1G17890 83.492 315 52 0 6 320 11 325 0.0 563
MS.gene22993.t1 AT1G17890 83.492 315 52 0 6 320 3 317 0.0 563
MS.gene22993.t1 AT1G17890 83.492 315 52 0 6 320 3 317 0.0 563
MS.gene22993.t1 AT1G73250 83.819 309 50 0 10 318 12 320 0.0 558
MS.gene22993.t1 AT5G28840 24.242 330 223 8 9 320 22 342 7.02e-21 92.4
MS.gene22993.t1 AT5G28840 24.242 330 223 8 9 320 22 342 7.02e-21 92.4
MS.gene22993.t1 AT3G14790 29.282 181 114 7 140 317 153 322 1.88e-14 74.3
MS.gene22993.t1 AT3G14790 29.282 181 114 7 140 317 156 325 1.96e-14 74.3
MS.gene22993.t1 AT2G28760 24.367 316 207 9 10 307 26 327 3.57e-13 69.7
MS.gene22993.t1 AT2G28760 24.367 316 207 9 10 307 26 327 3.57e-13 69.7
MS.gene22993.t1 AT2G28760 24.367 316 207 9 10 307 26 327 3.57e-13 69.7
MS.gene22993.t1 AT2G28760 24.367 316 207 9 10 307 57 358 4.58e-13 69.7
MS.gene22993.t1 AT3G46440 24.214 318 205 10 10 307 24 325 5.74e-13 68.9
MS.gene22993.t1 AT3G46440 24.214 318 205 10 10 307 24 325 5.74e-13 68.9
MS.gene22993.t1 AT1G53500 27.778 180 118 5 140 317 155 324 2.12e-12 68.2
MS.gene22993.t1 AT3G53520 26.603 312 198 12 13 307 118 415 4.49e-12 67.0
MS.gene22993.t1 AT1G64440 22.384 344 217 11 15 317 3 337 8.04e-12 65.9

Find 92 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGAAGATGCTTTGCTTAC+TGG 0.149882 7.2:-6522069 MS.gene22993:CDS
ATTGGTTGAGGTGCAAATTT+AGG 0.159427 7.2:+6522093 None:intergenic
GAGCTATCCATCAGCTTTCT+TGG 0.194906 7.2:+6521613 None:intergenic
CACAAGTGGGATGCAATTTC+AGG 0.203663 7.2:-6521967 MS.gene22993:CDS
AACAATAACCCTTACTGTTT+TGG 0.240454 7.2:+6523155 None:intergenic
CCATTCATTTGTGGGCTCTA+AGG 0.251483 7.2:+6522044 None:intergenic
ATTCTCTAAGTACCACTTAT+AGG 0.298342 7.2:+6521531 None:intergenic
GAGGTAGTGGTGTGGGGTAC+GGG 0.306076 7.2:-6521835 MS.gene22993:CDS
CCAGTAAGCAAAGCATCTTC+AGG 0.327068 7.2:+6522069 None:intergenic
TGGAAAGGAGGTTACAATTA+AGG 0.329079 7.2:-6521713 MS.gene22993:CDS
GGAGGTTACAATTAAGGAAT+TGG 0.338695 7.2:-6521707 MS.gene22993:CDS
GGGATGCCGACCAACTTATA+CGG 0.369504 7.2:-6521946 MS.gene22993:CDS
TTGGTTGAGGTGCAAATTTA+GGG 0.370655 7.2:+6522094 None:intergenic
CATTCATTTGTGGGCTCTAA+GGG 0.394688 7.2:+6522045 None:intergenic
CAATGACATTGGTCTGGATC+TGG 0.398176 7.2:+6522175 None:intergenic
AGCTTTCTTGGTGTCCCATC+GGG 0.401801 7.2:+6521625 None:intergenic
AGGTAGTGGTGTGGGGTACG+GGG 0.403323 7.2:-6521834 MS.gene22993:CDS
GGAGGTAGTGGTGTGGGGTA+CGG 0.416144 7.2:-6521836 MS.gene22993:CDS
TCGGGATGGAAATTATCATT+TGG 0.418888 7.2:+6521922 None:intergenic
TCCGGTCATCGAGGTCTTGT+TGG 0.420739 7.2:-6522402 MS.gene22993:CDS
GCAGCTACAATGACAAAATC+AGG 0.430975 7.2:+6522261 None:intergenic
AGCTCAAAACTTGCAGCCCT+TGG 0.432660 7.2:-6521595 MS.gene22993:CDS
TATGCCATTGCCAAGATTGC+CGG 0.438517 7.2:-6522021 MS.gene22993:CDS
CAGCTTTCTTGGTGTCCCAT+CGG 0.440823 7.2:+6521624 None:intergenic
GGAGTTGAGCATTTGAATGT+AGG 0.457314 7.2:-6521739 MS.gene22993:CDS
GGGTACGGGGAGTCCACTTA+GGG 0.460892 7.2:-6521821 MS.gene22993:CDS
TGCAAAGGAGGTAGTGGTGT+GGG 0.465275 7.2:-6521842 MS.gene22993:CDS
TCATCGAGGTCTTGTTGGTT+CGG 0.467475 7.2:-6522397 MS.gene22993:CDS
ACCAACAAGACCTCGATGAC+CGG 0.471640 7.2:+6522401 None:intergenic
GGCATGGATACCACCAACTT+TGG 0.472668 7.2:+6522236 None:intergenic
AGCAAAGCATCTTCAGGGAT+TGG 0.474197 7.2:+6522075 None:intergenic
GGGGTACGGGGAGTCCACTT+AGG 0.476642 7.2:-6521822 MS.gene22993:CDS
CAGAATCAATGACATTGGTC+TGG 0.477646 7.2:+6522169 None:intergenic
GAGTTGAGCATTTGAATGTA+GGG 0.483402 7.2:-6521738 MS.gene22993:CDS
ATCATTTGGTCCGTATAAGT+TGG 0.484602 7.2:+6521936 None:intergenic
AATGACAAAATCAGGCTTCG+TGG 0.485553 7.2:+6522269 None:intergenic
ATGGCATACCATTCATTTGT+GGG 0.486092 7.2:+6522036 None:intergenic
CAAAACTTGCAGCCCTTGGT+TGG 0.488475 7.2:-6521591 MS.gene22993:CDS
ATCAGCAGGATAGGTGTTGT+TGG 0.496759 7.2:+6522215 None:intergenic
GCATCTTCAGGGATTGGTTG+AGG 0.503925 7.2:+6522081 None:intergenic
AGGCTTCGTGGATGCAAAGA+AGG 0.505005 7.2:+6522281 None:intergenic
ATGCCATTGCCAAGATTGCC+GGG 0.506721 7.2:-6522020 MS.gene22993:CDS
GAATGTAGGGAGTGGAAAGG+AGG 0.511105 7.2:-6521725 MS.gene22993:CDS
CCATCCTTAAGTGAGACTTT+CGG 0.511365 7.2:+6521565 None:intergenic
GTTCGCAAGCTGACTCAACT+CGG 0.514389 7.2:-6522369 MS.gene22993:CDS
CAGGATAGGTGTTGTTGGCA+TGG 0.526132 7.2:+6522220 None:intergenic
ACAAGTGGGATGCAATTTCA+GGG 0.528356 7.2:-6521966 MS.gene22993:CDS
CCTTAGAGCCCACAAATGAA+TGG 0.530586 7.2:-6522044 MS.gene22993:CDS
ATTGTAGCTGCTGCCAAAGT+TGG 0.538288 7.2:-6522249 MS.gene22993:CDS
GATCCCGGCAATCTTGGCAA+TGG 0.538775 7.2:+6522017 None:intergenic
GGTCTGGATCTGGAGGTTGA+TGG 0.540673 7.2:+6522185 None:intergenic
CCGAAAGTCTCACTTAAGGA+TGG 0.543510 7.2:-6521565 MS.gene22993:CDS
TGAAACCTCCTCATCAAAGC+AGG 0.544927 7.2:+6521883 None:intergenic
CAACGGTGCAAAGGAGGTAG+TGG 0.546785 7.2:-6521848 MS.gene22993:CDS
CAGTAAGCAAAGCATCTTCA+GGG 0.549758 7.2:+6522070 None:intergenic
GAGTCAATGAAGGAAGTTGT+GGG 0.556089 7.2:-6521682 MS.gene22993:CDS
TTGATGGCAATGAAATCAGC+AGG 0.556836 7.2:+6522201 None:intergenic
GGAATTGGCTGAGTCAATGA+AGG 0.558355 7.2:-6521692 MS.gene22993:CDS
TTCGCAAGCTGACTCAACTC+GGG 0.561081 7.2:-6522368 MS.gene22993:CDS
AATGGCATACCATTCATTTG+TGG 0.562972 7.2:+6522035 None:intergenic
AGATGCAGTTGTCTTTATGA+TGG 0.567147 7.2:-6521773 MS.gene22993:CDS
GACACCGAAAGTCTCACTTA+AGG 0.568664 7.2:-6521569 MS.gene22993:CDS
GGCAATGAAATCAGCAGGAT+AGG 0.569157 7.2:+6522206 None:intergenic
TGGGACACCAAGAAAGCTGA+TGG 0.571175 7.2:-6521620 MS.gene22993:CDS
GAGCATTTGAATGTAGGGAG+TGG 0.573638 7.2:-6521733 MS.gene22993:CDS
GTAGCTGCTGCCAAAGTTGG+TGG 0.582192 7.2:-6522246 MS.gene22993:CDS
ATTGATTCTGCTTATCGCAA+TGG 0.583179 7.2:-6522156 MS.gene22993:CDS
GAGGAGGTTTCATGAGGCAA+AGG 0.584336 7.2:-6521872 MS.gene22993:CDS
TTGAGTCAGCTTGCGAACAA+TGG 0.584587 7.2:+6522374 None:intergenic
CATACAGAATTCAGCACAAG+TGG 0.592816 7.2:-6521981 MS.gene22993:CDS
CGAAAGTCTCACTTAAGGAT+GGG 0.593671 7.2:-6521564 MS.gene22993:CDS
GCAAAGGAGGTAGTGGTGTG+GGG 0.596327 7.2:-6521841 MS.gene22993:CDS
TTTGGTCCGTATAAGTTGGT+CGG 0.596979 7.2:+6521940 None:intergenic
GACTTTCGGTGTCCAACCAA+GGG 0.600503 7.2:+6521579 None:intergenic
GGCAAAGGTCAACGGTGCAA+AGG 0.605297 7.2:-6521857 MS.gene22993:CDS
TTTCATGAGGCAAAGGTCAA+CGG 0.606919 7.2:-6521865 MS.gene22993:CDS
AGACTTTCGGTGTCCAACCA+AGG 0.607421 7.2:+6521578 None:intergenic
ATAAGCAGAATCAATGACAT+TGG 0.607720 7.2:+6522164 None:intergenic
TGGGATAGTACTAAGCCCGA+TGG 0.610894 7.2:-6521640 MS.gene22993:CDS
GTGCAAAGGAGGTAGTGGTG+TGG 0.615768 7.2:-6521843 MS.gene22993:CDS
GGCTTGTTGATACCTATAAG+TGG 0.616689 7.2:-6521543 MS.gene22993:CDS
TTTGAATGTAGGGAGTGGAA+AGG 0.619261 7.2:-6521728 MS.gene22993:CDS
AAAGGTCAACGGTGCAAAGG+AGG 0.620001 7.2:-6521854 MS.gene22993:CDS
TCTAATCTTAAGAACTCATG+CGG 0.625073 7.2:-6522337 MS.gene22993:CDS
TTTGATGAGGAGGTTTCATG+AGG 0.636802 7.2:-6521878 MS.gene22993:CDS
GGGATAGTACTAAGCCCGAT+GGG 0.640020 7.2:-6521639 MS.gene22993:CDS
AAATTTAGGGTAAATGCAAG+AGG 0.655370 7.2:+6522107 None:intergenic
TGACATTGGTCTGGATCTGG+AGG 0.655686 7.2:+6522178 None:intergenic
TGAGTCAATGAAGGAAGTTG+TGG 0.655904 7.2:-6521683 MS.gene22993:CDS
ATTCATTTGTGGGCTCTAAG+GGG 0.661471 7.2:+6522046 None:intergenic
TTTATGATGGAAAAGTACAG+TGG 0.685676 7.2:-6521760 MS.gene22993:CDS
ATACAGAATTCAGCACAAGT+GGG 0.695878 7.2:-6521980 MS.gene22993:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTCTCAAATTACTAC+CGG - chr7.2:6521743-6521762 MS.gene22993:CDS 20.0%
! AACATTTAATGTGATCACAT+TGG + chr7.2:6521725-6521744 None:intergenic 25.0%
! ATAACAATGCTAACTCATTA+TGG - chr7.2:6522109-6522128 MS.gene22993:CDS 25.0%
! TGGTTTAATATGGTATCAAT+AGG - chr7.2:6521937-6521956 MS.gene22993:CDS 25.0%
!! AATTTTACTAGATTCAAAGG+TGG - chr7.2:6522053-6522072 MS.gene22993:CDS 25.0%
!! CAGAATTTTACTAGATTCAA+AGG - chr7.2:6522050-6522069 MS.gene22993:CDS 25.0%
!!! CATTTGCTTTTGGTTTAATA+TGG - chr7.2:6521927-6521946 MS.gene22993:CDS 25.0%
!!! GGTGAGAGAATTATTTTTAT+TGG - chr7.2:6522163-6522182 MS.gene22993:CDS 25.0%
ATAAGCAGAATCAATGACAT+TGG + chr7.2:6522521-6522540 None:intergenic 30.0%
ATTCTCTAAGTACCACTTAT+AGG + chr7.2:6523154-6523173 None:intergenic 30.0%
TCTAATCTTAAGAACTCATG+CGG - chr7.2:6522345-6522364 MS.gene22993:CDS 30.0%
! AAATTTAGGGTAAATGCAAG+AGG + chr7.2:6522578-6522597 None:intergenic 30.0%
! AACAATAACCCTTACTGTTT+TGG + chr7.2:6521530-6521549 None:intergenic 30.0%
! ATGTCTTTGATCAAAAGTGT+CGG + chr7.2:6521682-6521701 None:intergenic 30.0%
! TTTATGATGGAAAAGTACAG+TGG - chr7.2:6522922-6522941 MS.gene22993:intron 30.0%
!! TTAGCATTGTTATTGACTCT+TGG + chr7.2:6522102-6522121 None:intergenic 30.0%
!! TTTTGATGATAAATCTGCCA+AGG - chr7.2:6522249-6522268 MS.gene22993:CDS 30.0%
!!! GCTAAGAAGCTTTTGTTTTT+GGG - chr7.2:6522550-6522569 MS.gene22993:intron 30.0%
!!! TGCTAAGAAGCTTTTGTTTT+TGG - chr7.2:6522549-6522568 MS.gene22993:intron 30.0%
AAAGATAGCGTAGTTCGTAT+AGG + chr7.2:6522017-6522036 None:intergenic 35.0%
AATGGCATACCATTCATTTG+TGG + chr7.2:6522650-6522669 None:intergenic 35.0%
ACAGTTGAAACACATGAATG+AGG + chr7.2:6521558-6521577 None:intergenic 35.0%
ACCAAAAGCAAATGAACTCA+AGG + chr7.2:6521921-6521940 None:intergenic 35.0%
AGATGCAGTTGTCTTTATGA+TGG - chr7.2:6522909-6522928 MS.gene22993:intron 35.0%
ATACAGAATTCAGCACAAGT+GGG - chr7.2:6522702-6522721 MS.gene22993:intron 35.0%
ATCATTTGGTCCGTATAAGT+TGG + chr7.2:6522749-6522768 None:intergenic 35.0%
ATGGCATACCATTCATTTGT+GGG + chr7.2:6522649-6522668 None:intergenic 35.0%
ATTGGTTGAGGTGCAAATTT+AGG + chr7.2:6522592-6522611 None:intergenic 35.0%
CCAAAAGCAAATGAACTCAA+GGG + chr7.2:6521920-6521939 None:intergenic 35.0%
GAGTTGAGCATTTGAATGTA+GGG - chr7.2:6522944-6522963 MS.gene22993:intron 35.0%
GGAGGTTACAATTAAGGAAT+TGG - chr7.2:6522975-6522994 MS.gene22993:intron 35.0%
GTCAACGAGAACTTATAATC+AGG + chr7.2:6521989-6522008 None:intergenic 35.0%
TATAATCAGGACCTACAAAC+TGG + chr7.2:6521976-6521995 None:intergenic 35.0%
TCGAAAAAAACGCTCAATTG+CGG + chr7.2:6521859-6521878 None:intergenic 35.0%
TCGGGATGGAAATTATCATT+TGG + chr7.2:6522763-6522782 None:intergenic 35.0%
TGCCCTAAAAAAAGAAGAGA+GGG - chr7.2:6522142-6522161 MS.gene22993:CDS 35.0%
TGGAAAGGAGGTTACAATTA+AGG - chr7.2:6522969-6522988 MS.gene22993:intron 35.0%
TTGCCCTAAAAAAAGAAGAG+AGG - chr7.2:6522141-6522160 MS.gene22993:CDS 35.0%
TTGGTTGAGGTGCAAATTTA+GGG + chr7.2:6522591-6522610 None:intergenic 35.0%
! AGGCAAAACGTGTGAATTTT+CGG + chr7.2:6522782-6522801 None:intergenic 35.0%
! ATTGATTCTGCTTATCGCAA+TGG - chr7.2:6522526-6522545 MS.gene22993:intron 35.0%
!!! CACCCTCTCTTCTTTTTTTA+GGG + chr7.2:6522147-6522166 None:intergenic 35.0%
!!! TAGCTGTTTTTCCAGTTTGT+AGG - chr7.2:6521962-6521981 MS.gene22993:CDS 35.0%
!!! TCACCCTCTCTTCTTTTTTT+AGG + chr7.2:6522148-6522167 None:intergenic 35.0%
AATGACAAAATCAGGCTTCG+TGG + chr7.2:6522416-6522435 None:intergenic 40.0%
ACAAGTGGGATGCAATTTCA+GGG - chr7.2:6522716-6522735 MS.gene22993:intron 40.0%
ATGACCGGAAACAAAAACCT+TGG + chr7.2:6522269-6522288 None:intergenic 40.0%
ATGGGAAGCCAAAACAGTAA+GGG - chr7.2:6521519-6521538 MS.gene22993:CDS 40.0%
CAGAATCAATGACATTGGTC+TGG + chr7.2:6522516-6522535 None:intergenic 40.0%
CATACAGAATTCAGCACAAG+TGG - chr7.2:6522701-6522720 MS.gene22993:intron 40.0%
CCATCCTTAAGTGAGACTTT+CGG + chr7.2:6523120-6523139 None:intergenic 40.0%
CGAAAGTCTCACTTAAGGAT+GGG - chr7.2:6523118-6523137 MS.gene22993:intron 40.0%
CTAAAGCAATCGCTTCTGAA+AGG - chr7.2:6521817-6521836 MS.gene22993:CDS 40.0%
GAGTCAATGAAGGAAGTTGT+GGG - chr7.2:6523000-6523019 MS.gene22993:intron 40.0%
GCAGCTACAATGACAAAATC+AGG + chr7.2:6522424-6522443 None:intergenic 40.0%
GGAGTTGAGCATTTGAATGT+AGG - chr7.2:6522943-6522962 MS.gene22993:intron 40.0%
TGAGTCAATGAAGGAAGTTG+TGG - chr7.2:6522999-6523018 MS.gene22993:intron 40.0%
TTTCATGAGGCAAAGGTCAA+CGG - chr7.2:6522817-6522836 MS.gene22993:intron 40.0%
TTTGAATGTAGGGAGTGGAA+AGG - chr7.2:6522954-6522973 MS.gene22993:intron 40.0%
TTTGATGAGGAGGTTTCATG+AGG - chr7.2:6522804-6522823 MS.gene22993:intron 40.0%
! CACATTGGTTGAAGTTGTGT+CGG + chr7.2:6521710-6521729 None:intergenic 40.0%
! CAGTAAGCAAAGCATCTTCA+GGG + chr7.2:6522615-6522634 None:intergenic 40.0%
! CATTCATTTGTGGGCTCTAA+GGG + chr7.2:6522640-6522659 None:intergenic 40.0%
! CCCTTGAGTTCATTTGCTTT+TGG - chr7.2:6521917-6521936 MS.gene22993:CDS 40.0%
! GGCAAAACGTGTGAATTTTC+GGG + chr7.2:6522781-6522800 None:intergenic 40.0%
! GTTTTTGCACGTTGACGATT+TGG - chr7.2:6522885-6522904 MS.gene22993:intron 40.0%
! TTGATGGCAATGAAATCAGC+AGG + chr7.2:6522484-6522503 None:intergenic 40.0%
!! AAACGTGTGAATTTTCGGGA+TGG + chr7.2:6522777-6522796 None:intergenic 40.0%
!! AAGGAAGTTGTGGGTTTTGA+AGG - chr7.2:6523009-6523028 MS.gene22993:intron 40.0%
!! ATTCATTTGTGGGCTCTAAG+GGG + chr7.2:6522639-6522658 None:intergenic 40.0%
!! GGCTTGTTGATACCTATAAG+TGG - chr7.2:6523139-6523158 MS.gene22993:intron 40.0%
!! TCTGCCAAGGTTTTTGTTTC+CGG - chr7.2:6522262-6522281 MS.gene22993:CDS 40.0%
!! TGCTTGACACATTTTGATCC+CGG + chr7.2:6522683-6522702 None:intergenic 40.0%
!! TTTGGTCCGTATAAGTTGGT+CGG + chr7.2:6522745-6522764 None:intergenic 40.0%
!! TTTTGAAGGCGATCTCGTTT+GGG - chr7.2:6523023-6523042 MS.gene22993:intron 40.0%
AATGAACTCAAGGGCTACCT+CGG + chr7.2:6521911-6521930 None:intergenic 45.0%
ACGTGCAAAAACTCCCTAAG+TGG + chr7.2:6522877-6522896 None:intergenic 45.0%
AGCGTAGTTCGTATAGGTTG+TGG + chr7.2:6522011-6522030 None:intergenic 45.0%
ATTGTAGCTGCTGCCAAAGT+TGG - chr7.2:6522433-6522452 MS.gene22993:CDS 45.0%
CACAAGTGGGATGCAATTTC+AGG - chr7.2:6522715-6522734 MS.gene22993:intron 45.0%
CCATTCATTTGTGGGCTCTA+AGG + chr7.2:6522641-6522660 None:intergenic 45.0%
CCGAAAGTCTCACTTAAGGA+TGG - chr7.2:6523117-6523136 MS.gene22993:intron 45.0%
CCTGAAGATGCTTTGCTTAC+TGG - chr7.2:6522613-6522632 MS.gene22993:intron 45.0%
CCTTAGAGCCCACAAATGAA+TGG - chr7.2:6522638-6522657 MS.gene22993:intron 45.0%
GACACCGAAAGTCTCACTTA+AGG - chr7.2:6523113-6523132 MS.gene22993:intron 45.0%
GAGCATTTGAATGTAGGGAG+TGG - chr7.2:6522949-6522968 MS.gene22993:intron 45.0%
GAGCTATCCATCAGCTTTCT+TGG + chr7.2:6523072-6523091 None:intergenic 45.0%
GGAATTGGCTGAGTCAATGA+AGG - chr7.2:6522990-6523009 MS.gene22993:intron 45.0%
GGCAATGAAATCAGCAGGAT+AGG + chr7.2:6522479-6522498 None:intergenic 45.0%
TATGCCATTGCCAAGATTGC+CGG - chr7.2:6522661-6522680 MS.gene22993:intron 45.0%
TCGTGTCTGTGTTTGGTTGA+TGG - chr7.2:6521788-6521807 MS.gene22993:CDS 45.0%
TGAAACCTCCTCATCAAAGC+AGG + chr7.2:6522802-6522821 None:intergenic 45.0%
TTGAGTCAGCTTGCGAACAA+TGG + chr7.2:6522311-6522330 None:intergenic 45.0%
! ACGTTTTGCCTGCTTTGATG+AGG - chr7.2:6522791-6522810 MS.gene22993:intron 45.0%
! AGCAAAGCATCTTCAGGGAT+TGG + chr7.2:6522610-6522629 None:intergenic 45.0%
! ATCAGCAGGATAGGTGTTGT+TGG + chr7.2:6522470-6522489 None:intergenic 45.0%
! CAATGACATTGGTCTGGATC+TGG + chr7.2:6522510-6522529 None:intergenic 45.0%
! CCAGTAAGCAAAGCATCTTC+AGG + chr7.2:6522616-6522635 None:intergenic 45.0%
! TTTTGCCTGCTTTGATGAGG+AGG - chr7.2:6522794-6522813 MS.gene22993:intron 45.0%
!! CATTTTGATCCCGGCAATCT+TGG + chr7.2:6522674-6522693 None:intergenic 45.0%
!! GATCAAAAGTGTCGGTGCTA+TGG + chr7.2:6521674-6521693 None:intergenic 45.0%
!! GTTTTTGTTTCCGGTCATCG+AGG - chr7.2:6522271-6522290 MS.gene22993:CDS 45.0%
!! TCATCGAGGTCTTGTTGGTT+CGG - chr7.2:6522285-6522304 MS.gene22993:CDS 45.0%
!!! GTTTTGAAGGCGATCTCGTT+TGG - chr7.2:6523022-6523041 MS.gene22993:intron 45.0%
AAAGGTCAACGGTGCAAAGG+AGG - chr7.2:6522828-6522847 MS.gene22993:intron 50.0%
ACACAATGTCTCACTCTCCG+AGG - chr7.2:6521891-6521910 MS.gene22993:CDS 50.0%
ACCAAACACAGACACGACAC+TGG + chr7.2:6521785-6521804 None:intergenic 50.0%
ACCAACAAGACCTCGATGAC+CGG + chr7.2:6522284-6522303 None:intergenic 50.0%
AGCTCAAAACTTGCAGCCCT+TGG - chr7.2:6523087-6523106 MS.gene22993:intron 50.0%
AGGCTTCGTGGATGCAAAGA+AGG + chr7.2:6522404-6522423 None:intergenic 50.0%
ATGCCATTGCCAAGATTGCC+GGG - chr7.2:6522662-6522681 MS.gene22993:intron 50.0%
CAAAACTTGCAGCCCTTGGT+TGG - chr7.2:6523091-6523110 MS.gene22993:intron 50.0%
GAATGTAGGGAGTGGAAAGG+AGG - chr7.2:6522957-6522976 MS.gene22993:intron 50.0%
GAGGAGGTTTCATGAGGCAA+AGG - chr7.2:6522810-6522829 MS.gene22993:intron 50.0%
GGCATGGATACCACCAACTT+TGG + chr7.2:6522449-6522468 None:intergenic 50.0%
GGGATAGTACTAAGCCCGAT+GGG - chr7.2:6523043-6523062 MS.gene22993:intron 50.0%
GGGATGCCGACCAACTTATA+CGG - chr7.2:6522736-6522755 MS.gene22993:intron 50.0%
TGGCACTAACACACTGTCAC+CGG + chr7.2:6521765-6521784 None:intergenic 50.0%
TGGGACACCAAGAAAGCTGA+TGG - chr7.2:6523062-6523081 MS.gene22993:intron 50.0%
TGGGATAGTACTAAGCCCGA+TGG - chr7.2:6523042-6523061 MS.gene22993:intron 50.0%
! GTTCGCAAGCTGACTCAACT+CGG - chr7.2:6522313-6522332 MS.gene22993:CDS 50.0%
! TGACATTGGTCTGGATCTGG+AGG + chr7.2:6522507-6522526 None:intergenic 50.0%
! TGCAAAGGAGGTAGTGGTGT+GGG - chr7.2:6522840-6522859 MS.gene22993:intron 50.0%
! TTCGCAAGCTGACTCAACTC+GGG - chr7.2:6522314-6522333 MS.gene22993:CDS 50.0%
!! AGACTTTCGGTGTCCAACCA+AGG + chr7.2:6523107-6523126 None:intergenic 50.0%
!! AGCTTTCTTGGTGTCCCATC+GGG + chr7.2:6523060-6523079 None:intergenic 50.0%
!! CAGCTTTCTTGGTGTCCCAT+CGG + chr7.2:6523061-6523080 None:intergenic 50.0%
!! CAGGATAGGTGTTGTTGGCA+TGG + chr7.2:6522465-6522484 None:intergenic 50.0%
!! GACTTTCGGTGTCCAACCAA+GGG + chr7.2:6523106-6523125 None:intergenic 50.0%
!! GCATCTTCAGGGATTGGTTG+AGG + chr7.2:6522604-6522623 None:intergenic 50.0%
CAACGGTGCAAAGGAGGTAG+TGG - chr7.2:6522834-6522853 MS.gene22993:intron 55.0%
GATCCCGGCAATCTTGGCAA+TGG + chr7.2:6522668-6522687 None:intergenic 55.0%
GCCAGTGTCGTGTCTGTGTT+TGG - chr7.2:6521781-6521800 MS.gene22993:CDS 55.0%
GGCAAAGGTCAACGGTGCAA+AGG - chr7.2:6522825-6522844 MS.gene22993:intron 55.0%
GGTCTGGATCTGGAGGTTGA+TGG + chr7.2:6522500-6522519 None:intergenic 55.0%
GTAGCTGCTGCCAAAGTTGG+TGG - chr7.2:6522436-6522455 MS.gene22993:CDS 55.0%
! GCAAAGGAGGTAGTGGTGTG+GGG - chr7.2:6522841-6522860 MS.gene22993:intron 55.0%
! GTGCAAAGGAGGTAGTGGTG+TGG - chr7.2:6522839-6522858 MS.gene22993:intron 55.0%
! TCCGGTCATCGAGGTCTTGT+TGG - chr7.2:6522280-6522299 MS.gene22993:CDS 55.0%
GGGTACGGGGAGTCCACTTA+GGG - chr7.2:6522861-6522880 MS.gene22993:intron 60.0%
! AGGTAGTGGTGTGGGGTACG+GGG - chr7.2:6522848-6522867 MS.gene22993:intron 60.0%
! GAGGTAGTGGTGTGGGGTAC+GGG - chr7.2:6522847-6522866 MS.gene22993:intron 60.0%
! GGAGGTAGTGGTGTGGGGTA+CGG - chr7.2:6522846-6522865 MS.gene22993:intron 60.0%
GGGGTACGGGGAGTCCACTT+AGG - chr7.2:6522860-6522879 MS.gene22993:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 6521519 6523185 6521519 ID=MS.gene22993
chr7.2 mRNA 6521519 6523185 6521519 ID=MS.gene22993.t1;Parent=MS.gene22993
chr7.2 exon 6523170 6523185 6523170 ID=MS.gene22993.t1.exon1;Parent=MS.gene22993.t1
chr7.2 CDS 6523170 6523185 6523170 ID=cds.MS.gene22993.t1;Parent=MS.gene22993.t1
chr7.2 exon 6521519 6522465 6521519 ID=MS.gene22993.t1.exon2;Parent=MS.gene22993.t1
chr7.2 CDS 6521519 6522465 6521519 ID=cds.MS.gene22993.t1;Parent=MS.gene22993.t1
Gene Sequence

>MS.gene22993

ATGGGAAGCCAAAACAGTAAGGGTTATTGTTCTTCTCCTCATTCATGTGTTTCAACTGTTTGATTATATTTTTTGAAAATTGTAGCTGTTTTGAAAGACTAACTTGAATTAAAAATATTAATTATTAGATTAGTAAATATCAATATTAATCTCCATAGCACCGACACTTTTGATCAAAGACATTGTGTCCGACACAACTTCAACCAATGTGATCACATTAAATGTTATTTTCTCAAATTACTACCGGTGACAGTGTGTTAGTGCCAGTGTCGTGTCTGTGTTTGGTTGATGGAATATTCTAAAGCAATCGCTTCTGAAAGGATTTGAACTAATTGTGCCGCAATTGAGCGTTTTTTTCGAATCGCTACATAGACACAATGTCTCACTCTCCGAGGTAGCCCTTGAGTTCATTTGCTTTTGGTTTAATATGGTATCAATAGGTATAGCTGTTTTTCCAGTTTGTAGGTCCTGATTATAAGTTCTCGTTGACCACAACCTATACGAACTACGCTATCTTTTGCTTTTAACATGCAGAATTTTACTAGATTCAAAGGTGGTTGTTTAGATGAATCATAGTGATCCAAGAGTCAATAACAATGCTAACTCATTATGGCAAAAATTCTTGCCCTAAAAAAAGAAGAGAGGGTGAGAGAATTATTTTTATTGGACTTCTAATGTCTGAATTTTTTATTTTTTTAATTTTTTTTTGTGTATATGCAGCAGCAGCATTTTTTGATGATAAATCTGCCAAGGTTTTTGTTTCCGGTCATCGAGGTCTTGTTGGTTCGGCCATTGTTCGCAAGCTGACTCAACTCGGGTTCACAAATCTAATCTTAAGAACTCATGCGGAGCTTGATCTCACTCGACAATCTGATGTTGAAGCCTTCTTTGCATCCACGAAGCCTGATTTTGTCATTGTAGCTGCTGCCAAAGTTGGTGGTATCCATGCCAACAACACCTATCCTGCTGATTTCATTGCCATCAACCTCCAGATCCAGACCAATGTCATTGATTCTGCTTATCGCAATGGTGCTAAGAAGCTTTTGTTTTTGGGTTCCTCTTGCATTTACCCTAAATTTGCACCTCAACCAATCCCTGAAGATGCTTTGCTTACTGGCCCCTTAGAGCCCACAAATGAATGGTATGCCATTGCCAAGATTGCCGGGATCAAAATGTGTCAAGCATACAGAATTCAGCACAAGTGGGATGCAATTTCAGGGATGCCGACCAACTTATACGGACCAAATGATAATTTCCATCCCGAAAATTCACACGTTTTGCCTGCTTTGATGAGGAGGTTTCATGAGGCAAAGGTCAACGGTGCAAAGGAGGTAGTGGTGTGGGGTACGGGGAGTCCACTTAGGGAGTTTTTGCACGTTGACGATTTGGCAGATGCAGTTGTCTTTATGATGGAAAAGTACAGTGGAGTTGAGCATTTGAATGTAGGGAGTGGAAAGGAGGTTACAATTAAGGAATTGGCTGAGTCAATGAAGGAAGTTGTGGGTTTTGAAGGCGATCTCGTTTGGGATAGTACTAAGCCCGATGGGACACCAAGAAAGCTGATGGATAGCTCAAAACTTGCAGCCCTTGGTTGGACACCGAAAGTCTCACTTAAGGATGGGCTTGTTGATACCTATAAGTGGTACTTAGAGAATGTCAAGCAATGA
Protein sequence

>MS.gene22993.t1

MGSQNTAAFFDDKSAKVFVSGHRGLVGSAIVRKLTQLGFTNLILRTHAELDLTRQSDVEAFFASTKPDFVIVAAAKVGGIHANNTYPADFIAINLQIQTNVIDSAYRNGAKKLLFLGSSCIYPKFAPQPIPEDALLTGPLEPTNEWYAIAKIAGIKMCQAYRIQHKWDAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMEKYSGVEHLNVGSGKEVTIKELAESMKEVVGFEGDLVWDSTKPDGTPRKLMDSSKLAALGWTPKVSLKDGLVDTYKWYLENVKQ