AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23668

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23668.t1 MTR_8g036060 99.026 308 2 1 1 307 1 308 0.0 610
MS.gene23668.t1 MTR_5g091630 54.104 268 98 4 35 300 2 246 7.90e-78 238
MS.gene23668.t1 MTR_5g011520 88.462 156 18 0 84 239 98 253 2.02e-77 239
MS.gene23668.t1 MTR_7g080980 59.615 208 74 3 95 302 66 263 2.62e-68 214
MS.gene23668.t1 MTR_3g068035 55.455 220 78 4 96 300 89 303 1.41e-67 213
MS.gene23668.t1 MTR_4g098450 52.518 278 114 3 34 307 33 296 1.57e-67 213
MS.gene23668.t1 MTR_1g079810 56.485 239 80 4 86 307 74 305 1.87e-67 213
MS.gene23668.t1 MTR_1g044155 76.623 154 35 1 83 235 122 275 4.70e-67 214
MS.gene23668.t1 MTR_1g073860 76.667 150 35 0 86 235 94 243 3.26e-66 210
MS.gene23668.t1 MTR_3g100470 40.523 306 144 9 6 306 15 287 6.31e-60 193
MS.gene23668.t1 MTR_5g080580 65.000 140 49 0 96 235 99 238 9.74e-53 176
MS.gene23668.t1 MTR_5g066020 40.000 275 132 5 38 307 6 252 3.84e-47 159
MS.gene23668.t1 MTR_5g089600 38.255 149 81 2 86 223 77 225 2.69e-30 114
MS.gene23668.t1 MTR_4g057487 32.547 212 121 5 86 275 17 228 3.07e-24 99.0
MS.gene23668.t1 MTR_5g010330 38.854 157 89 3 75 225 93 248 3.28e-24 100
MS.gene23668.t1 MTR_5g089700 33.548 155 94 1 85 230 74 228 1.31e-23 97.1
MS.gene23668.t1 MTR_4g057525 31.731 208 114 5 86 275 36 233 6.49e-23 95.5
MS.gene23668.t1 MTR_1g079780 39.496 119 71 1 108 225 104 222 4.19e-22 94.7
MS.gene23668.t1 MTR_1g032910 36.420 162 87 5 86 233 101 260 8.83e-22 93.6
MS.gene23668.t1 MTR_1g053685 32.704 159 98 2 86 235 85 243 2.11e-21 92.0
MS.gene23668.t1 MTR_1g061530 41.600 125 69 2 116 236 144 268 8.94e-21 91.7
MS.gene23668.t1 MTR_6g061670 40.517 116 66 2 113 225 130 245 4.05e-19 86.3
MS.gene23668.t1 MTR_6g061670 40.517 116 66 2 113 225 125 240 5.33e-19 85.9
MS.gene23668.t1 MTR_5g089090 35.811 148 89 1 86 227 28 175 8.35e-19 83.2
MS.gene23668.t1 MTR_8g098390 40.323 124 70 3 105 225 158 280 2.29e-18 84.7
MS.gene23668.t1 MTR_1g076710 43.966 116 61 2 113 225 134 248 4.24e-18 83.6
MS.gene23668.t1 MTR_4g098460 37.838 148 75 4 86 225 57 195 9.24e-18 82.0
MS.gene23668.t1 MTR_1g073870 42.857 154 40 5 83 235 48 154 1.47e-17 80.1
MS.gene23668.t1 MTR_7g116320 38.938 113 69 0 113 225 143 255 2.88e-17 81.6
MS.gene23668.t1 MTR_7g077120 36.301 146 87 2 86 225 127 272 4.15e-17 80.9
MS.gene23668.t1 MTR_8g036160 44.737 114 59 1 116 225 145 258 4.20e-17 81.3
MS.gene23668.t1 MTR_7g074935 46.903 113 57 1 116 225 130 242 5.50e-17 80.5
MS.gene23668.t1 MTR_7g116320 38.400 125 73 1 113 233 143 267 2.48e-16 77.8
MS.gene23668.t1 MTR_4g069110 41.053 95 56 0 86 180 34 128 2.56e-16 75.9
MS.gene23668.t1 MTR_4g098460 36.842 152 76 4 86 225 57 200 5.73e-16 77.0
MS.gene23668.t1 MTR_8g031100 32.512 203 126 3 83 274 122 324 7.45e-16 77.4
MS.gene23668.t1 MTR_8g078930 36.508 126 70 3 117 233 5 129 5.93e-15 71.6
MS.gene23668.t1 MTR_4g055813 34.091 132 85 2 112 241 18 149 1.05e-14 73.2
MS.gene23668.t1 MTR_5g011680 33.871 124 75 2 116 232 145 268 1.26e-14 73.2
MS.gene23668.t1 MTR_4g101990 50.746 67 33 0 116 182 147 213 3.98e-14 72.0
MS.gene23668.t1 MTR_5g011610 34.307 137 84 4 110 243 53 186 9.00e-14 71.2
MS.gene23668.t1 MTR_5g011620 35.780 109 68 1 117 225 119 225 1.32e-13 71.6
MS.gene23668.t1 MTR_4g055803 38.983 118 62 3 116 225 128 243 2.61e-13 70.5
MS.gene23668.t1 MTR_1g071850 34.965 143 65 3 93 235 37 151 2.98e-13 67.8
MS.gene23668.t1 MTR_4g055833 32.857 140 88 2 112 245 121 260 9.33e-13 68.2
MS.gene23668.t1 MTR_6g060670 35.455 110 69 2 116 225 180 287 7.37e-12 65.5
MS.gene23668.t1 MTR_3g116100 26.180 233 125 8 85 278 92 316 2.17e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23668.t1 AT2G45430 64.815 324 90 10 1 307 1 317 2.72e-91 274
MS.gene23668.t1 AT3G60870 54.870 308 95 10 1 307 1 265 7.66e-87 261
MS.gene23668.t1 AT4G22810 58.025 324 98 10 10 307 13 324 4.30e-80 246
MS.gene23668.t1 AT2G42940 58.036 224 73 3 82 304 49 252 6.52e-75 230
MS.gene23668.t1 AT4G12050 58.419 291 96 7 34 307 57 339 3.73e-74 231
MS.gene23668.t1 AT2G35270 72.078 154 43 0 86 239 78 231 2.66e-71 222
MS.gene23668.t1 AT1G76500 68.485 165 43 1 82 237 68 232 5.94e-67 211
MS.gene23668.t1 AT4G14465 68.590 156 49 0 84 239 65 220 4.02e-64 204
MS.gene23668.t1 AT4G17800 57.009 214 79 2 95 307 91 292 5.00e-64 204
MS.gene23668.t1 AT3G04570 71.519 158 37 1 86 235 80 237 2.18e-62 200
MS.gene23668.t1 AT5G49700 51.829 164 72 2 83 239 53 216 8.88e-56 182
MS.gene23668.t1 AT4G35390 73.333 150 38 1 86 233 63 212 4.06e-55 181
MS.gene23668.t1 AT1G20900 69.375 160 40 1 85 235 85 244 3.73e-52 174
MS.gene23668.t1 AT3G55560 54.425 226 78 6 12 235 36 238 4.49e-51 171
MS.gene23668.t1 AT1G14490 43.216 199 104 3 87 278 6 202 4.75e-42 144
MS.gene23668.t1 AT1G14490 43.216 199 104 3 87 278 25 221 8.03e-42 144
MS.gene23668.t1 AT2G33620 40.113 177 94 4 80 253 131 298 6.82e-24 100
MS.gene23668.t1 AT2G33620 40.113 177 94 4 80 253 131 298 6.82e-24 100
MS.gene23668.t1 AT2G33620 40.113 177 94 4 80 253 131 298 6.82e-24 100
MS.gene23668.t1 AT2G33620 40.113 177 94 4 80 253 131 298 6.82e-24 100
MS.gene23668.t1 AT1G63470 41.096 146 79 3 86 225 147 291 2.60e-23 99.0
MS.gene23668.t1 AT4G17950 37.696 191 104 4 86 263 196 384 2.17e-22 97.1
MS.gene23668.t1 AT5G51590 42.478 113 62 1 116 225 181 293 4.93e-22 95.9
MS.gene23668.t1 AT5G62260 39.516 124 72 1 113 233 160 283 7.84e-22 93.6
MS.gene23668.t1 AT4G12080 42.478 113 62 1 116 225 173 285 1.11e-21 94.0
MS.gene23668.t1 AT4G25320 42.478 113 62 1 116 225 169 281 1.23e-21 94.7
MS.gene23668.t1 AT5G62260 42.241 116 64 1 113 225 160 275 1.36e-21 94.4
MS.gene23668.t1 AT5G62260 42.241 116 64 1 113 225 160 275 1.36e-21 94.4
MS.gene23668.t1 AT3G04590 37.273 110 69 0 116 225 174 283 7.42e-21 92.4
MS.gene23668.t1 AT3G04590 37.273 110 69 0 116 225 174 283 1.43e-20 90.5
MS.gene23668.t1 AT2G45850 37.427 171 89 5 86 244 132 296 1.69e-20 90.5
MS.gene23668.t1 AT2G45850 37.427 171 89 5 86 244 132 296 1.69e-20 90.5
MS.gene23668.t1 AT2G45850 38.158 152 76 5 86 225 132 277 6.25e-19 85.1
MS.gene23668.t1 AT4G00200 45.133 113 59 1 116 225 126 238 2.40e-16 78.6
MS.gene23668.t1 AT4G00200 45.133 113 59 1 116 225 126 238 2.40e-16 78.6
MS.gene23668.t1 AT3G61310 31.111 225 129 5 86 304 134 338 1.26e-15 76.6
MS.gene23668.t1 AT1G63480 34.247 146 89 3 86 225 130 274 1.60e-15 76.6
MS.gene23668.t1 AT1G63480 34.247 146 89 3 86 225 130 274 1.60e-15 76.6
MS.gene23668.t1 AT1G63480 34.247 146 89 3 86 225 124 268 1.81e-15 76.3
MS.gene23668.t1 AT1G63480 34.247 146 89 3 86 225 124 268 1.81e-15 76.3
MS.gene23668.t1 AT1G63480 34.247 146 89 3 86 225 124 268 1.81e-15 76.3
MS.gene23668.t1 AT1G63480 34.247 146 89 3 86 225 124 268 1.81e-15 76.3
MS.gene23668.t1 AT1G63480 34.247 146 89 3 86 225 124 268 1.81e-15 76.3
MS.gene23668.t1 AT5G46640 44.792 96 51 1 86 181 155 248 9.52e-15 74.3
MS.gene23668.t1 AT4G22770 39.823 113 65 1 116 225 153 265 3.53e-14 72.4
MS.gene23668.t1 AT4G22770 39.823 113 65 1 116 225 153 265 3.53e-14 72.4

Find 115 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTACCAGCTGAGGGTTAT+TGG 0.236815 8.1:+67130707 MS.gene23668:CDS
CTACAAGTTGTTGCTGTTGC+TGG 0.255008 8.1:-67130624 None:intergenic
ATTACCAGCTGAGGGTTATT+GGG 0.283232 8.1:+67130708 MS.gene23668:CDS
AATAACCCTCAGCTGGTAAT+TGG 0.299906 8.1:-67130705 None:intergenic
GTGCCAGGAAATGGAGGGTT+AGG 0.321400 8.1:+67130562 MS.gene23668:CDS
GACCCTAACCCTCCATTTCC+TGG 0.349826 8.1:-67130565 None:intergenic
CCATTTCCTGGCACATTCAC+TGG 0.353925 8.1:-67130553 None:intergenic
GTGGGACCGTTGTTGGCTTC+CGG 0.360811 8.1:+67130457 MS.gene23668:CDS
GAGCGTGGTGGGACCGTTGT+TGG 0.376140 8.1:+67130450 MS.gene23668:CDS
TGTTGACTTCCCATGGTTCC+CGG 0.379448 8.1:-67130589 None:intergenic
CCAGTGAATGTGCCAGGAAA+TGG 0.383912 8.1:+67130553 MS.gene23668:CDS
TTCGAGATACTATCCTTATC+TGG 0.384098 8.1:+67130343 MS.gene23668:CDS
GTTGTTCCTCTTCGTTGGTT+TGG 0.386217 8.1:-67129925 None:intergenic
AAATGGAGGGTTAGGGTCAC+CGG 0.387872 8.1:+67130570 MS.gene23668:CDS
TTCCGGACCGGTTGTTATCA+TGG 0.389245 8.1:+67130474 MS.gene23668:CDS
CTGGTGGAGCAGGCGGCGGC+AGG 0.390554 8.1:-67130372 None:intergenic
GTTATCATGGCAGCTTCCTT+TGG 0.391274 8.1:+67130487 MS.gene23668:CDS
GAACCTGCTGGTCTTCCTCT+TGG 0.392781 8.1:-67130094 None:intergenic
GTCTGCATCCTTAGCGGAAG+TGG 0.397268 8.1:+67130253 MS.gene23668:CDS
CTATCCCTCGTGATGATGAT+AGG 0.408236 8.1:-67130136 None:intergenic
CTGCTGTTGTTGACTTCCCA+TGG 0.408503 8.1:-67130596 None:intergenic
GGTGGTTGGTGTGAAATTGA+TGG 0.411727 8.1:-67129904 None:intergenic
CCTGCTCCACCAGCGGCGTC+AGG 0.417474 8.1:+67130382 MS.gene23668:CDS
CTCTTCGTTGGTTTGGTGGT+TGG 0.418891 8.1:-67129918 None:intergenic
GGAAAAGACGACGGCGGCAG+CGG 0.422522 8.1:+67130031 MS.gene23668:CDS
GTGATGATGATAGGTGGTTT+TGG 0.425501 8.1:-67130127 None:intergenic
TGGAAAAGTGATGTAGCATT+AGG 0.427339 8.1:-67130652 None:intergenic
CCTGACGCCGCTGGTGGAGC+AGG 0.427453 8.1:-67130382 None:intergenic
TTGTCCACCAGCTAGATATA+TGG 0.434432 8.1:-67130410 None:intergenic
GGAGGAAGTGGTGGTGAGAT+GGG 0.435031 8.1:+67130064 MS.gene23668:CDS
ACCGTTGTTGGCTTCCGGAC+CGG 0.435941 8.1:+67130462 MS.gene23668:CDS
GCCGCTGGTGGAGCAGGCGG+CGG 0.437684 8.1:-67130376 None:intergenic
CTCCGTCAACCAGCATCGCC+TGG 0.453764 8.1:+67130295 MS.gene23668:CDS
TGGAGGAAGTGGTGGTGAGA+TGG 0.454468 8.1:+67130063 MS.gene23668:CDS
ACTTTGTTGTTCCTCTTCGT+TGG 0.455028 8.1:-67129930 None:intergenic
TGAAGGTCTCTAGTGAGAAA+TGG 0.456542 8.1:-67129869 None:intergenic
GGTGTTTCTTCATCTTCTAA+AGG 0.458356 8.1:-67130532 None:intergenic
GACGGCGGCAGCGGAAGTGC+TGG 0.472230 8.1:+67130040 MS.gene23668:CDS
GGAAGTGCTGGTGGAGGAAG+TGG 0.481505 8.1:+67130052 MS.gene23668:CDS
GTCGTCGGTGGGAGCGTGGT+GGG 0.489586 8.1:+67130439 MS.gene23668:CDS
GTGAGAAATGGAGGTGGAAG+AGG 0.493012 8.1:-67129857 None:intergenic
AACACTCCCACCGGAGGAGA+AGG 0.494922 8.1:+67130010 MS.gene23668:CDS
GTTCCTCTTCGTTGGTTTGG+TGG 0.510018 8.1:-67129922 None:intergenic
TGCCATGATAACAACCGGTC+CGG 0.511741 8.1:-67130476 None:intergenic
GAAGCTGCCATGATAACAAC+CGG 0.512466 8.1:-67130481 None:intergenic
GTTAGGGTCACCGGGAACCA+TGG 0.515128 8.1:+67130579 MS.gene23668:CDS
CAACTTCCATCACGTGGGAT+CGG 0.516425 8.1:-67130171 None:intergenic
CGTGGTGTCTGCATCCTTAG+CGG 0.517651 8.1:+67130247 MS.gene23668:CDS
CACCAGGCGATGCTGGTTGA+CGG 0.520951 8.1:-67130297 None:intergenic
ACTACCGCACCAGGCGATGC+TGG 0.521135 8.1:-67130304 None:intergenic
AGACCAAGAGGAAGACCAGC+AGG 0.525862 8.1:+67130091 MS.gene23668:CDS
ACAGGTCGTCGGTGGGAGCG+TGG 0.529478 8.1:+67130435 MS.gene23668:CDS
GACGGCAACAACACTCCCAC+CGG 0.530783 8.1:+67130001 MS.gene23668:CDS
TTAGGGTCACCGGGAACCAT+GGG 0.531803 8.1:+67130580 MS.gene23668:CDS
GAAACACCAGTGAATGTGCC+AGG 0.532629 8.1:+67130547 MS.gene23668:CDS
CACGTGATGGAAGTTGCAAA+TGG 0.532739 8.1:+67130178 MS.gene23668:CDS
TTCATGCCAATTACCAGCTG+AGG 0.532750 8.1:+67130699 MS.gene23668:CDS
TCTAGCTGGTGGACAAGGAC+AGG 0.533824 8.1:+67130417 MS.gene23668:CDS
TGACGGTCCCACTTCCGCTA+AGG 0.536192 8.1:-67130261 None:intergenic
GCTAATCCTGACGCCGCTGG+TGG 0.537711 8.1:-67130388 None:intergenic
GGTGCGGTAGTCACACTTCA+CGG 0.538196 8.1:+67130316 MS.gene23668:CDS
GGACAAGGACAGGTCGTCGG+TGG 0.538200 8.1:+67130427 MS.gene23668:CDS
TTGGAAATGCTGCTTATGAA+AGG 0.542501 8.1:+67130506 MS.gene23668:CDS
CCACCCCAATAACCCTCAGC+TGG 0.544497 8.1:-67130712 None:intergenic
GGCGGCAGCGGAAGTGCTGG+TGG 0.547464 8.1:+67130043 MS.gene23668:CDS
TGCCAGGAAATGGAGGGTTA+GGG 0.548211 8.1:+67130563 MS.gene23668:CDS
CGGCAGGAAAGAGCCAGATA+AGG 0.551698 8.1:-67130356 None:intergenic
ATATATCTAGCTGGTGGACA+AGG 0.552899 8.1:+67130412 MS.gene23668:CDS
TGAAGTGTGACTACCGCACC+AGG 0.554425 8.1:-67130313 None:intergenic
TGCAAATGGATGTGACATCA+TGG 0.561346 8.1:+67130192 MS.gene23668:CDS
GGATTAGCCATATATCTAGC+TGG 0.562049 8.1:+67130403 MS.gene23668:CDS
GGTCGTCGGTGGGAGCGTGG+TGG 0.562103 8.1:+67130438 MS.gene23668:CDS
GGCAGCGGAAGTGCTGGTGG+AGG 0.564080 8.1:+67130046 MS.gene23668:CDS
GTGAATGTGCCAGGAAATGG+AGG 0.571584 8.1:+67130556 MS.gene23668:CDS
CCAGCTGAGGGTTATTGGGG+TGG 0.572923 8.1:+67130712 MS.gene23668:CDS
CGAGAACGAAACAACGAAGA+CGG 0.574284 8.1:+67129983 MS.gene23668:CDS
TTACCAGCTGAGGGTTATTG+GGG 0.574478 8.1:+67130709 MS.gene23668:CDS
CATTTGCAACTTCCATCACG+TGG 0.576032 8.1:-67130177 None:intergenic
CAACCACCAAACCAACGAAG+AGG 0.578019 8.1:+67129919 MS.gene23668:CDS
GACGCCGCTGGTGGAGCAGG+CGG 0.578168 8.1:-67130379 None:intergenic
ATGGCTAATCCTGACGCCGC+TGG 0.580569 8.1:-67130391 None:intergenic
CGCACTCCGATCCCACGTGA+TGG 0.581464 8.1:+67130165 MS.gene23668:CDS
TGACGGTCTTTGCGCGAAGG+AGG 0.585381 8.1:+67130221 MS.gene23668:CDS
TCAACCAGCATCGCCTGGTG+CGG 0.586124 8.1:+67130300 MS.gene23668:CDS
AATGGAGGGTTAGGGTCACC+GGG 0.588273 8.1:+67130571 MS.gene23668:CDS
GACAAGGACAGGTCGTCGGT+GGG 0.588517 8.1:+67130428 MS.gene23668:CDS
GTGTGACGGTCTTTGCGCGA+AGG 0.589217 8.1:+67130218 MS.gene23668:CDS
GAGGAACAACAAAGTGGCAA+TGG 0.592421 8.1:+67129938 MS.gene23668:CDS
GCCGCCGCCTGCTCCACCAG+CGG 0.593837 8.1:+67130375 MS.gene23668:CDS
TCATGCCAATTACCAGCTGA+GGG 0.610376 8.1:+67130700 MS.gene23668:CDS
GGCAACAACACTCCCACCGG+AGG 0.610978 8.1:+67130004 MS.gene23668:CDS
TCTGCATCCTTAGCGGAAGT+GGG 0.612016 8.1:+67130254 MS.gene23668:CDS
TTCATAAGCAGCATTTCCAA+AGG 0.616192 8.1:-67130503 None:intergenic
ACGGAGAGTCACGTTTGTGA+CGG 0.630141 8.1:-67130278 None:intergenic
GGTGGACAAGGACAGGTCGT+CGG 0.631663 8.1:+67130424 MS.gene23668:CDS
GGCAATGGTAACTTAAGCCG+AGG 0.631690 8.1:+67129953 MS.gene23668:CDS
GAGATGGGAAGAAGACCAAG+AGG 0.634395 8.1:+67130079 MS.gene23668:CDS
TCTCTAGTGAGAAATGGAGG+TGG 0.634778 8.1:-67129863 None:intergenic
TTAGCCATATATCTAGCTGG+TGG 0.635384 8.1:+67130406 MS.gene23668:CDS
GATGGTGAGGATGAAGATGA+AGG 0.638930 8.1:-67129886 None:intergenic
AGTGCTGGTGGAGGAAGTGG+TGG 0.643608 8.1:+67130055 MS.gene23668:CDS
TTGGTGTGAAATTGATGGTG+AGG 0.647165 8.1:-67129899 None:intergenic
AACGAAGAGGAACAACAAAG+TGG 0.649911 8.1:+67129932 MS.gene23668:CDS
GGAGAAGGAAAAGACGACGG+CGG 0.657317 8.1:+67130025 MS.gene23668:CDS
GGAGGAGAAGGAAAAGACGA+CGG 0.659945 8.1:+67130022 MS.gene23668:CDS
ACCGGTCCGGAAGCCAACAA+CGG 0.661651 8.1:-67130463 None:intergenic
AGGTCTCTAGTGAGAAATGG+AGG 0.664192 8.1:-67129866 None:intergenic
TCCCTCGTGATGATGATAGG+TGG 0.665852 8.1:-67130133 None:intergenic
ATTTGCAACTTCCATCACGT+GGG 0.680861 8.1:-67130176 None:intergenic
ATCATGGATCAAGTAGCACA+AGG 0.681581 8.1:+67129830 None:intergenic
AACCACCTATCATCATCACG+AGG 0.692541 8.1:+67130131 MS.gene23668:CDS
ACCACCTATCATCATCACGA+GGG 0.702832 8.1:+67130132 MS.gene23668:CDS
TTTGCGCGAAGGAGGCAGCG+TGG 0.709250 8.1:+67130229 MS.gene23668:CDS
TGAATGTGCCAGGAAATGGA+GGG 0.719115 8.1:+67130557 MS.gene23668:CDS
TGACATCATGGAAAGTGTGA+CGG 0.725106 8.1:+67130204 MS.gene23668:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! CATGAATTGAGAAGATTTTG+AGG - chr8.1:67130685-67130704 None:intergenic 30.0%
GGTGTTTCTTCATCTTCTAA+AGG - chr8.1:67130535-67130554 None:intergenic 35.0%
TGGAAAAGTGATGTAGCATT+AGG - chr8.1:67130655-67130674 None:intergenic 35.0%
TTCATAAGCAGCATTTCCAA+AGG - chr8.1:67130506-67130525 None:intergenic 35.0%
TTCGAGATACTATCCTTATC+TGG + chr8.1:67130343-67130362 MS.gene23668:CDS 35.0%
! TTGGAAATGCTGCTTATGAA+AGG + chr8.1:67130506-67130525 MS.gene23668:CDS 35.0%
!! AATGCTACATCACTTTTCCA+TGG + chr8.1:67130655-67130674 MS.gene23668:CDS 35.0%
AACGAAGAGGAACAACAAAG+TGG + chr8.1:67129932-67129951 MS.gene23668:CDS 40.0%
AATAACCCTCAGCTGGTAAT+TGG - chr8.1:67130708-67130727 None:intergenic 40.0%
AATTACCAGCTGAGGGTTAT+TGG + chr8.1:67130707-67130726 MS.gene23668:CDS 40.0%
ATTACCAGCTGAGGGTTATT+GGG + chr8.1:67130708-67130727 MS.gene23668:CDS 40.0%
ATTTGCAACTTCCATCACGT+GGG - chr8.1:67130179-67130198 None:intergenic 40.0%
TGAAGGTCTCTAGTGAGAAA+TGG - chr8.1:67129872-67129891 None:intergenic 40.0%
TGCAAATGGATGTGACATCA+TGG + chr8.1:67130192-67130211 MS.gene23668:CDS 40.0%
TTAGCCATATATCTAGCTGG+TGG + chr8.1:67130406-67130425 MS.gene23668:CDS 40.0%
TTGTCCACCAGCTAGATATA+TGG - chr8.1:67130413-67130432 None:intergenic 40.0%
! ATATATCTAGCTGGTGGACA+AGG + chr8.1:67130412-67130431 MS.gene23668:CDS 40.0%
! TGACATCATGGAAAGTGTGA+CGG + chr8.1:67130204-67130223 MS.gene23668:CDS 40.0%
!! ACTTTGTTGTTCCTCTTCGT+TGG - chr8.1:67129933-67129952 None:intergenic 40.0%
!! CGTTGTTTCGTTCTCGTTTT+TGG - chr8.1:67129979-67129998 None:intergenic 40.0%
!! GAAGATTTTGAGGAACTCCA+TGG - chr8.1:67130675-67130694 None:intergenic 40.0%
!! GGATTAGCCATATATCTAGC+TGG + chr8.1:67130403-67130422 MS.gene23668:CDS 40.0%
!! GTGATGATGATAGGTGGTTT+TGG - chr8.1:67130130-67130149 None:intergenic 40.0%
!! TTGGTGTGAAATTGATGGTG+AGG - chr8.1:67129902-67129921 None:intergenic 40.0%
AACCACCTATCATCATCACG+AGG + chr8.1:67130131-67130150 MS.gene23668:CDS 45.0%
ACCACCTATCATCATCACGA+GGG + chr8.1:67130132-67130151 MS.gene23668:CDS 45.0%
AGGTCTCTAGTGAGAAATGG+AGG - chr8.1:67129869-67129888 None:intergenic 45.0%
CATTTGCAACTTCCATCACG+TGG - chr8.1:67130180-67130199 None:intergenic 45.0%
CGAGAACGAAACAACGAAGA+CGG + chr8.1:67129983-67130002 MS.gene23668:CDS 45.0%
GAAGCTGCCATGATAACAAC+CGG - chr8.1:67130484-67130503 None:intergenic 45.0%
GAGGAACAACAAAGTGGCAA+TGG + chr8.1:67129938-67129957 MS.gene23668:CDS 45.0%
GATGGTGAGGATGAAGATGA+AGG - chr8.1:67129889-67129908 None:intergenic 45.0%
GTTATCATGGCAGCTTCCTT+TGG + chr8.1:67130487-67130506 MS.gene23668:CDS 45.0%
TCATGCCAATTACCAGCTGA+GGG + chr8.1:67130700-67130719 MS.gene23668:CDS 45.0%
TCTCTAGTGAGAAATGGAGG+TGG - chr8.1:67129866-67129885 None:intergenic 45.0%
TGAATGTGCCAGGAAATGGA+GGG + chr8.1:67130557-67130576 MS.gene23668:CDS 45.0%
TTACCAGCTGAGGGTTATTG+GGG + chr8.1:67130709-67130728 MS.gene23668:CDS 45.0%
TTCATGCCAATTACCAGCTG+AGG + chr8.1:67130699-67130718 MS.gene23668:CDS 45.0%
! CACGTGATGGAAGTTGCAAA+TGG + chr8.1:67130178-67130197 MS.gene23668:CDS 45.0%
! CTACAAGTTGTTGCTGTTGC+TGG - chr8.1:67130627-67130646 None:intergenic 45.0%
! CTATCCCTCGTGATGATGAT+AGG - chr8.1:67130139-67130158 None:intergenic 45.0%
! GGTGGTTGGTGTGAAATTGA+TGG - chr8.1:67129907-67129926 None:intergenic 45.0%
! GTTGTTCCTCTTCGTTGGTT+TGG - chr8.1:67129928-67129947 None:intergenic 45.0%
!! GGTTTGTTTTTCGAACCTGC+TGG - chr8.1:67130109-67130128 None:intergenic 45.0%
!!! TTCGTTCTCGTTTTTGGCCT+CGG - chr8.1:67129973-67129992 None:intergenic 45.0%
AAATGGAGGGTTAGGGTCAC+CGG + chr8.1:67130570-67130589 MS.gene23668:CDS 50.0%
ACGGAGAGTCACGTTTGTGA+CGG - chr8.1:67130281-67130300 None:intergenic 50.0%
CAACCACCAAACCAACGAAG+AGG + chr8.1:67129919-67129938 MS.gene23668:CDS 50.0%
CAACTTCCATCACGTGGGAT+CGG - chr8.1:67130174-67130193 None:intergenic 50.0%
CCAGTGAATGTGCCAGGAAA+TGG + chr8.1:67130553-67130572 MS.gene23668:CDS 50.0%
CCATTTCCTGGCACATTCAC+TGG - chr8.1:67130556-67130575 None:intergenic 50.0%
GAAACACCAGTGAATGTGCC+AGG + chr8.1:67130547-67130566 MS.gene23668:CDS 50.0%
GAGATGGGAAGAAGACCAAG+AGG + chr8.1:67130079-67130098 MS.gene23668:CDS 50.0%
GGAGGAGAAGGAAAAGACGA+CGG + chr8.1:67130022-67130041 MS.gene23668:CDS 50.0%
GGCAATGGTAACTTAAGCCG+AGG + chr8.1:67129953-67129972 MS.gene23668:CDS 50.0%
GTGAATGTGCCAGGAAATGG+AGG + chr8.1:67130556-67130575 MS.gene23668:CDS 50.0%
GTGAGAAATGGAGGTGGAAG+AGG - chr8.1:67129860-67129879 None:intergenic 50.0%
TCTGCATCCTTAGCGGAAGT+GGG + chr8.1:67130254-67130273 MS.gene23668:CDS 50.0%
TGCCAGGAAATGGAGGGTTA+GGG + chr8.1:67130563-67130582 MS.gene23668:CDS 50.0%
TGCCATGATAACAACCGGTC+CGG - chr8.1:67130479-67130498 None:intergenic 50.0%
TTCCGGACCGGTTGTTATCA+TGG + chr8.1:67130474-67130493 MS.gene23668:CDS 50.0%
! GTCGTCTTTTCCTTCTCCTC+CGG - chr8.1:67130023-67130042 None:intergenic 50.0%
! TCCCTCGTGATGATGATAGG+TGG - chr8.1:67130136-67130155 None:intergenic 50.0%
! TCTTTTCCTTCTCCTCCGGT+GGG - chr8.1:67130019-67130038 None:intergenic 50.0%
!! CTCTTCGTTGGTTTGGTGGT+TGG - chr8.1:67129921-67129940 None:intergenic 50.0%
!! CTGCTGTTGTTGACTTCCCA+TGG - chr8.1:67130599-67130618 None:intergenic 50.0%
!! GTTCCTCTTCGTTGGTTTGG+TGG - chr8.1:67129925-67129944 None:intergenic 50.0%
!! TGTTGACTTCCCATGGTTCC+CGG - chr8.1:67130592-67130611 None:intergenic 50.0%
AATGGAGGGTTAGGGTCACC+GGG + chr8.1:67130571-67130590 MS.gene23668:CDS 55.0%
AGACCAAGAGGAAGACCAGC+AGG + chr8.1:67130091-67130110 MS.gene23668:CDS 55.0%
CGGCAGGAAAGAGCCAGATA+AGG - chr8.1:67130359-67130378 None:intergenic 55.0%
CGTGGTGTCTGCATCCTTAG+CGG + chr8.1:67130247-67130266 MS.gene23668:CDS 55.0%
GACCCTAACCCTCCATTTCC+TGG - chr8.1:67130568-67130587 None:intergenic 55.0%
GGAGAAGGAAAAGACGACGG+CGG + chr8.1:67130025-67130044 MS.gene23668:CDS 55.0%
GGTGCGGTAGTCACACTTCA+CGG + chr8.1:67130316-67130335 MS.gene23668:CDS 55.0%
GTCTGCATCCTTAGCGGAAG+TGG + chr8.1:67130253-67130272 MS.gene23668:CDS 55.0%
GTGCCAGGAAATGGAGGGTT+AGG + chr8.1:67130562-67130581 MS.gene23668:CDS 55.0%
TGAAGTGTGACTACCGCACC+AGG - chr8.1:67130316-67130335 None:intergenic 55.0%
TTAGGGTCACCGGGAACCAT+GGG + chr8.1:67130580-67130599 MS.gene23668:CDS 55.0%
! GGAGGAAGTGGTGGTGAGAT+GGG + chr8.1:67130064-67130083 MS.gene23668:CDS 55.0%
! GTCTTTTCCTTCTCCTCCGG+TGG - chr8.1:67130020-67130039 None:intergenic 55.0%
! TCTAGCTGGTGGACAAGGAC+AGG + chr8.1:67130417-67130436 MS.gene23668:CDS 55.0%
! TGGAGGAAGTGGTGGTGAGA+TGG + chr8.1:67130063-67130082 MS.gene23668:CDS 55.0%
!! GAACCTGCTGGTCTTCCTCT+TGG - chr8.1:67130097-67130116 None:intergenic 55.0%
AACACTCCCACCGGAGGAGA+AGG + chr8.1:67130010-67130029 MS.gene23668:CDS 60.0%
ACCGGTCCGGAAGCCAACAA+CGG - chr8.1:67130466-67130485 None:intergenic 60.0%
ATGGCTAATCCTGACGCCGC+TGG - chr8.1:67130394-67130413 None:intergenic 60.0%
CCACCCCAATAACCCTCAGC+TGG - chr8.1:67130715-67130734 None:intergenic 60.0%
CCAGCTGAGGGTTATTGGGG+TGG + chr8.1:67130712-67130731 MS.gene23668:CDS 60.0%
GACAAGGACAGGTCGTCGGT+GGG + chr8.1:67130428-67130447 MS.gene23668:CDS 60.0%
GACGGCAACAACACTCCCAC+CGG + chr8.1:67130001-67130020 MS.gene23668:CDS 60.0%
GGTGGACAAGGACAGGTCGT+CGG + chr8.1:67130424-67130443 MS.gene23668:CDS 60.0%
GTGTGACGGTCTTTGCGCGA+AGG + chr8.1:67130218-67130237 MS.gene23668:CDS 60.0%
GTTAGGGTCACCGGGAACCA+TGG + chr8.1:67130579-67130598 MS.gene23668:CDS 60.0%
TCAACCAGCATCGCCTGGTG+CGG + chr8.1:67130300-67130319 MS.gene23668:CDS 60.0%
TGACGGTCCCACTTCCGCTA+AGG - chr8.1:67130264-67130283 None:intergenic 60.0%
TGACGGTCTTTGCGCGAAGG+AGG + chr8.1:67130221-67130240 MS.gene23668:CDS 60.0%
! CACCAGGCGATGCTGGTTGA+CGG - chr8.1:67130300-67130319 None:intergenic 60.0%
!! ACCGTTGTTGGCTTCCGGAC+CGG + chr8.1:67130462-67130481 MS.gene23668:CDS 60.0%
!! AGTGCTGGTGGAGGAAGTGG+TGG + chr8.1:67130055-67130074 MS.gene23668:CDS 60.0%
!! GGAAGTGCTGGTGGAGGAAG+TGG + chr8.1:67130052-67130071 MS.gene23668:CDS 60.0%
!! GTGGGACCGTTGTTGGCTTC+CGG + chr8.1:67130457-67130476 MS.gene23668:CDS 60.0%
ACTACCGCACCAGGCGATGC+TGG - chr8.1:67130307-67130326 None:intergenic 65.0%
CGCACTCCGATCCCACGTGA+TGG + chr8.1:67130165-67130184 MS.gene23668:CDS 65.0%
CTCCGTCAACCAGCATCGCC+TGG + chr8.1:67130295-67130314 MS.gene23668:CDS 65.0%
GCTAATCCTGACGCCGCTGG+TGG - chr8.1:67130391-67130410 None:intergenic 65.0%
GGAAAAGACGACGGCGGCAG+CGG + chr8.1:67130031-67130050 MS.gene23668:CDS 65.0%
GGACAAGGACAGGTCGTCGG+TGG + chr8.1:67130427-67130446 MS.gene23668:CDS 65.0%
GGCAACAACACTCCCACCGG+AGG + chr8.1:67130004-67130023 MS.gene23668:CDS 65.0%
TTTGCGCGAAGGAGGCAGCG+TGG + chr8.1:67130229-67130248 MS.gene23668:CDS 65.0%
! GAGCGTGGTGGGACCGTTGT+TGG + chr8.1:67130450-67130469 MS.gene23668:CDS 65.0%
ACAGGTCGTCGGTGGGAGCG+TGG + chr8.1:67130435-67130454 MS.gene23668:CDS 70.0%
! GTCGTCGGTGGGAGCGTGGT+GGG + chr8.1:67130439-67130458 MS.gene23668:CDS 70.0%
!! GGCAGCGGAAGTGCTGGTGG+AGG + chr8.1:67130046-67130065 MS.gene23668:CDS 70.0%
CCTGACGCCGCTGGTGGAGC+AGG - chr8.1:67130385-67130404 None:intergenic 75.0%
CCTGCTCCACCAGCGGCGTC+AGG + chr8.1:67130382-67130401 MS.gene23668:CDS 75.0%
GACGCCGCTGGTGGAGCAGG+CGG - chr8.1:67130382-67130401 None:intergenic 75.0%
! GACGGCGGCAGCGGAAGTGC+TGG + chr8.1:67130040-67130059 MS.gene23668:CDS 75.0%
! GGTCGTCGGTGGGAGCGTGG+TGG + chr8.1:67130438-67130457 MS.gene23668:CDS 75.0%
!! GGCGGCAGCGGAAGTGCTGG+TGG + chr8.1:67130043-67130062 MS.gene23668:CDS 75.0%
! CTGGTGGAGCAGGCGGCGGC+AGG - chr8.1:67130375-67130394 None:intergenic 80.0%
! GCCGCCGCCTGCTCCACCAG+CGG + chr8.1:67130375-67130394 MS.gene23668:CDS 80.0%
! GCCGCTGGTGGAGCAGGCGG+CGG - chr8.1:67130379-67130398 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 67129833 67130756 67129833 ID=MS.gene23668
chr8.1 mRNA 67129833 67130756 67129833 ID=MS.gene23668.t1;Parent=MS.gene23668
chr8.1 exon 67129833 67130756 67129833 ID=MS.gene23668.t1.exon1;Parent=MS.gene23668.t1
chr8.1 CDS 67129833 67130756 67129833 ID=cds.MS.gene23668.t1;Parent=MS.gene23668.t1
Gene Sequence

>MS.gene23668

ATGGATCAAGTAGCACAAGGTCGTCCTCTTCCACCTCCATTTCTCACTAGAGACCTTCATCTTCATCCTCACCATCAATTTCACACCAACCACCAAACCAACGAAGAGGAACAACAAAGTGGCAATGGTAACTTAAGCCGAGGCCAAAAACGAGAACGAAACAACGAAGACGGCAACAACACTCCCACCGGAGGAGAAGGAAAAGACGACGGCGGCAGCGGAAGTGCTGGTGGAGGAAGTGGTGGTGAGATGGGAAGAAGACCAAGAGGAAGACCAGCAGGTTCGAAAAACAAACCAAAACCACCTATCATCATCACGAGGGATAGCGCGAACGCACTCCGATCCCACGTGATGGAAGTTGCAAATGGATGTGACATCATGGAAAGTGTGACGGTCTTTGCGCGAAGGAGGCAGCGTGGTGTCTGCATCCTTAGCGGAAGTGGGACCGTCACAAACGTGACTCTCCGTCAACCAGCATCGCCTGGTGCGGTAGTCACACTTCACGGAAGATTCGAGATACTATCCTTATCTGGCTCTTTCCTGCCGCCGCCTGCTCCACCAGCGGCGTCAGGATTAGCCATATATCTAGCTGGTGGACAAGGACAGGTCGTCGGTGGGAGCGTGGTGGGACCGTTGTTGGCTTCCGGACCGGTTGTTATCATGGCAGCTTCCTTTGGAAATGCTGCTTATGAAAGGCTACCTTTAGAAGATGAAGAAACACCAGTGAATGTGCCAGGAAATGGAGGGTTAGGGTCACCGGGAACCATGGGAAGTCAACAACAGCAGCAGAACCAGCAACAGCAACAACTTGTAGCAGATCCTAATGCTACATCACTTTTCCATGGAGTTCCTCAAAATCTTCTCAATTCATGCCAATTACCAGCTGAGGGTTATTGGGGTGGAAGTGCTCGTCCTCCTTTTTAA
Protein sequence

>MS.gene23668.t1

MDQVAQGRPLPPPFLTRDLHLHPHHQFHTNHQTNEEEQQSGNGNLSRGQKRERNNEDGNNTPTGGEGKDDGGSGSAGGGSGGEMGRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEVANGCDIMESVTVFARRRQRGVCILSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLEDEETPVNVPGNGGLGSPGTMGSQQQQQNQQQQQLVADPNATSLFHGVPQNLLNSCQLPAEGYWGGSARPPF