Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24682.t1 | XP_003625833.1 | 98.3 | 406 | 6 | 1 | 1 | 406 | 1 | 405 | 4.10E-206 | 727.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24682.t1 | Q9FLE8 | 40.8 | 184 | 87 | 4 | 243 | 406 | 208 | 389 | 3.9e-32 | 140.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24682.t1 | G7KQV9 | 98.3 | 406 | 6 | 1 | 1 | 406 | 1 | 405 | 2.9e-206 | 727.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene24682 | 0.814661 | 1.38E-51 | -1.69E-46 |
| MS.gene04985 | MS.gene24682 | 0.80979 | 1.59E-50 | -1.69E-46 |
| MS.gene049989 | MS.gene24682 | 0.841409 | 4.84E-58 | -1.69E-46 |
| MS.gene050297 | MS.gene24682 | 0.841889 | 3.61E-58 | -1.69E-46 |
| MS.gene050310 | MS.gene24682 | 0.914517 | 1.75E-84 | -1.69E-46 |
| MS.gene050648 | MS.gene24682 | 0.833558 | 4.98E-56 | -1.69E-46 |
| MS.gene051067 | MS.gene24682 | 0.820924 | 5.30E-53 | -1.69E-46 |
| MS.gene051263 | MS.gene24682 | 0.802337 | 5.88E-49 | -1.69E-46 |
| MS.gene051478 | MS.gene24682 | 0.841665 | 4.14E-58 | -1.69E-46 |
| MS.gene053536 | MS.gene24682 | 0.824367 | 8.39E-54 | -1.69E-46 |
| MS.gene053538 | MS.gene24682 | 0.822207 | 2.68E-53 | -1.69E-46 |
| MS.gene055764 | MS.gene24682 | 0.822047 | 2.92E-53 | -1.69E-46 |
| MS.gene056169 | MS.gene24682 | 0.82974 | 4.35E-55 | -1.69E-46 |
| MS.gene056228 | MS.gene24682 | 0.822825 | 1.92E-53 | -1.69E-46 |
| MS.gene057004 | MS.gene24682 | 0.807439 | 5.05E-50 | -1.69E-46 |
| MS.gene057483 | MS.gene24682 | 0.807913 | 4.01E-50 | -1.69E-46 |
| MS.gene058196 | MS.gene24682 | 0.822681 | 2.08E-53 | -1.69E-46 |
| MS.gene058197 | MS.gene24682 | 0.858619 | 7.28E-63 | -1.69E-46 |
| MS.gene058198 | MS.gene24682 | 0.86217 | 6.13E-64 | -1.69E-46 |
| MS.gene059300 | MS.gene24682 | 0.877812 | 4.66E-69 | -1.69E-46 |
| MS.gene059424 | MS.gene24682 | 0.821766 | 3.39E-53 | -1.69E-46 |
| MS.gene06057 | MS.gene24682 | 0.875652 | 2.60E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24682.t1 | MTR_7g104720 | 98.030 | 406 | 7 | 1 | 1 | 406 | 1 | 405 | 0.0 | 806 |
| MS.gene24682.t1 | MTR_1g090400 | 44.076 | 211 | 114 | 3 | 197 | 405 | 160 | 368 | 2.30e-53 | 182 |
| MS.gene24682.t1 | MTR_8g106900 | 54.819 | 166 | 68 | 3 | 247 | 405 | 108 | 273 | 8.22e-47 | 162 |
| MS.gene24682.t1 | MTR_7g090230 | 31.920 | 401 | 210 | 13 | 22 | 406 | 72 | 425 | 9.52e-47 | 166 |
| MS.gene24682.t1 | MTR_7g106500 | 42.564 | 195 | 98 | 4 | 222 | 406 | 89 | 279 | 1.07e-44 | 156 |
| MS.gene24682.t1 | MTR_5g083110 | 49.333 | 150 | 74 | 2 | 257 | 405 | 90 | 238 | 2.14e-41 | 147 |
| MS.gene24682.t1 | MTR_8g099665 | 43.373 | 166 | 85 | 2 | 249 | 405 | 202 | 367 | 7.96e-41 | 149 |
| MS.gene24682.t1 | MTR_3g017490 | 45.270 | 148 | 79 | 1 | 260 | 405 | 113 | 260 | 1.66e-40 | 145 |
| MS.gene24682.t1 | MTR_8g038440 | 47.712 | 153 | 75 | 2 | 259 | 406 | 103 | 255 | 3.32e-40 | 144 |
| MS.gene24682.t1 | MTR_1g051180 | 44.444 | 162 | 79 | 2 | 256 | 406 | 203 | 364 | 7.97e-39 | 143 |
| MS.gene24682.t1 | MTR_3g465550 | 49.660 | 147 | 69 | 4 | 258 | 401 | 84 | 228 | 1.15e-36 | 134 |
| MS.gene24682.t1 | MTR_7g010090 | 29.252 | 441 | 238 | 14 | 6 | 406 | 26 | 432 | 2.02e-36 | 138 |
| MS.gene24682.t1 | MTR_5g072400 | 44.295 | 149 | 81 | 2 | 258 | 405 | 106 | 253 | 2.34e-36 | 134 |
| MS.gene24682.t1 | MTR_6g011640 | 29.438 | 445 | 191 | 17 | 23 | 406 | 15 | 397 | 9.85e-36 | 135 |
| MS.gene24682.t1 | MTR_3g071510 | 39.227 | 181 | 100 | 5 | 226 | 405 | 63 | 234 | 4.61e-35 | 130 |
| MS.gene24682.t1 | MTR_3g030520 | 38.608 | 158 | 77 | 3 | 269 | 406 | 142 | 299 | 1.07e-24 | 103 |
| MS.gene24682.t1 | MTR_5g031560 | 38.095 | 105 | 45 | 3 | 305 | 406 | 4 | 91 | 2.80e-14 | 68.6 |
| MS.gene24682.t1 | MTR_7g079015 | 39.560 | 91 | 46 | 2 | 302 | 383 | 1 | 91 | 1.86e-13 | 66.6 |
| MS.gene24682.t1 | MTR_5g048870 | 37.234 | 94 | 56 | 1 | 256 | 346 | 63 | 156 | 1.25e-11 | 62.8 |
| MS.gene24682.t1 | MTR_1g095960 | 40.230 | 87 | 43 | 2 | 306 | 383 | 32 | 118 | 2.05e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24682.t1 | AT5G03870 | 47.962 | 417 | 171 | 14 | 1 | 405 | 1 | 383 | 1.00e-96 | 294 |
| MS.gene24682.t1 | AT4G10630 | 48.634 | 183 | 79 | 4 | 237 | 405 | 152 | 333 | 7.95e-48 | 166 |
| MS.gene24682.t1 | AT5G06470 | 46.988 | 166 | 80 | 2 | 247 | 405 | 74 | 238 | 7.93e-46 | 158 |
| MS.gene24682.t1 | AT3G57070 | 32.360 | 411 | 199 | 14 | 22 | 406 | 59 | 416 | 9.72e-46 | 163 |
| MS.gene24682.t1 | AT2G41330 | 30.318 | 409 | 196 | 12 | 22 | 406 | 58 | 401 | 1.00e-42 | 154 |
| MS.gene24682.t1 | AT5G01420 | 48.718 | 156 | 77 | 3 | 252 | 405 | 246 | 400 | 1.76e-41 | 151 |
| MS.gene24682.t1 | AT1G32760 | 55.128 | 156 | 61 | 3 | 259 | 405 | 158 | 313 | 5.81e-41 | 147 |
| MS.gene24682.t1 | AT1G64500 | 45.509 | 167 | 81 | 4 | 249 | 405 | 199 | 365 | 2.86e-40 | 147 |
| MS.gene24682.t1 | AT5G13810 | 46.000 | 150 | 79 | 2 | 258 | 405 | 123 | 272 | 5.85e-39 | 141 |
| MS.gene24682.t1 | AT5G58530 | 45.570 | 158 | 75 | 3 | 258 | 405 | 109 | 265 | 1.50e-38 | 140 |
| MS.gene24682.t1 | AT5G39865 | 36.017 | 236 | 116 | 6 | 204 | 406 | 156 | 389 | 8.85e-37 | 138 |
| MS.gene24682.t1 | AT3G11773 | 46.099 | 141 | 73 | 3 | 266 | 405 | 11 | 149 | 6.13e-35 | 126 |
| MS.gene24682.t1 | AT3G28850 | 39.665 | 179 | 76 | 4 | 260 | 406 | 249 | 427 | 4.08e-31 | 123 |
| MS.gene24682.t1 | AT3G11773 | 35.484 | 186 | 92 | 5 | 221 | 405 | 41 | 199 | 8.38e-26 | 103 |
Find 96 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTATGGATTCCGGGTTTA+AGG | 0.176980 | 7.3:-9788263 | MS.gene24682:CDS |
| CTGTTCCTTCTTGCAGAAAA+TGG | 0.194971 | 7.3:+9788619 | None:intergenic |
| TTGAAGTTTCTTAGTCAATA+TGG | 0.198310 | 7.3:-9788796 | MS.gene24682:CDS |
| TTGATGTTGAAGACAGTTTC+TGG | 0.216462 | 7.3:+9788937 | None:intergenic |
| GGTGGTGATGGGTTTGATTT+GGG | 0.236282 | 7.3:+9788970 | None:intergenic |
| AGTGGATGAAGTTATGAAAT+TGG | 0.256695 | 7.3:-9788164 | MS.gene24682:CDS |
| TGGTGGTGATGGGTTTGATT+TGG | 0.267268 | 7.3:+9788969 | None:intergenic |
| GGAGGAATTAAGGAAGCTTA+TGG | 0.277561 | 7.3:-9788242 | MS.gene24682:CDS |
| GGAGACCCTTTCAAATTCTT+AGG | 0.290595 | 7.3:+9788640 | None:intergenic |
| TAATGGAAGTTGTAAGGTTT+TGG | 0.299182 | 7.3:-9788041 | MS.gene24682:CDS |
| TGTGGTTATTGTAATGAAAA+TGG | 0.304286 | 7.3:-9787992 | MS.gene24682:CDS |
| AGATAAATTAGGTGTTCTTT+TGG | 0.307593 | 7.3:-9788134 | MS.gene24682:CDS |
| CCGGGTTTAAGGAGGAATTA+AGG | 0.318478 | 7.3:-9788252 | MS.gene24682:CDS |
| TGTTTCTGAAACAATGGAAT+TGG | 0.326815 | 7.3:+9789020 | None:intergenic |
| GGCTTCTTGAGTGTAGATTT+TGG | 0.327883 | 7.3:+9788769 | None:intergenic |
| TAAGGTTCAAGTTACTAATA+TGG | 0.330515 | 7.3:-9788731 | MS.gene24682:CDS |
| TTGGAAGATGAAGATAAATT+AGG | 0.331173 | 7.3:-9788145 | MS.gene24682:CDS |
| CGTGATGTGTCTATGGATTC+CGG | 0.334847 | 7.3:-9788271 | MS.gene24682:CDS |
| GAAGGGATTCCAAGGGCATT+AGG | 0.338815 | 7.3:-9788112 | MS.gene24682:CDS |
| GCCATTGGGGAAAGAGAATA+AGG | 0.342459 | 7.3:-9788749 | MS.gene24682:CDS |
| GGGTCTTTGTGTGGTGGTGA+TGG | 0.349102 | 7.3:+9788958 | None:intergenic |
| GAAGAAAAGGTGCGGACTTT+GGG | 0.352950 | 7.3:+9788851 | None:intergenic |
| TCTGCAAGAAGGAACAGTTT+TGG | 0.354149 | 7.3:-9788613 | MS.gene24682:CDS |
| CGAAGAAAAGGTGCGGACTT+TGG | 0.372618 | 7.3:+9788850 | None:intergenic |
| AAGAGGTGGTGTTAGACGTT+TGG | 0.372997 | 7.3:-9788707 | MS.gene24682:CDS |
| TTTCTTGGGAAAATTTGAAA+TGG | 0.385876 | 7.3:+9788876 | None:intergenic |
| TGAAGTTTCTTAGTCAATAT+GGG | 0.397473 | 7.3:-9788795 | MS.gene24682:CDS |
| TCTCTCACTTCTTCAACCTA+TGG | 0.405012 | 7.3:-9789087 | MS.gene24682:CDS |
| GTGATGTGTCTATGGATTCC+GGG | 0.405890 | 7.3:-9788270 | MS.gene24682:CDS |
| GCGCGAGCGTGATGTGTCTA+TGG | 0.412447 | 7.3:-9788278 | MS.gene24682:CDS |
| GGTCTTTGTGTGGTGGTGAT+GGG | 0.415835 | 7.3:+9788959 | None:intergenic |
| TCATAGGATGCAATAATCTC+TGG | 0.418703 | 7.3:+9788538 | None:intergenic |
| GTGAAGGGTGTGGAGGTTTG+AGG | 0.418799 | 7.3:-9788084 | MS.gene24682:CDS |
| GAGGAATTAAGGAAGCTTAT+GGG | 0.421784 | 7.3:-9788241 | MS.gene24682:CDS |
| GGAATGTAATGGAAGTTGTA+AGG | 0.427272 | 7.3:-9788047 | MS.gene24682:CDS |
| TCTACACTCAAGAAGCCATT+GGG | 0.429305 | 7.3:-9788763 | MS.gene24682:CDS |
| TGATGTTGAAGACAGTTTCT+GGG | 0.432089 | 7.3:+9788938 | None:intergenic |
| TTCTTGGGAAAATTTGAAAT+GGG | 0.432791 | 7.3:+9788877 | None:intergenic |
| TGTTCTCAAACAAGTTCAAA+AGG | 0.437472 | 7.3:+9788422 | None:intergenic |
| TTTGAGGTTTGTGATGTGTA+AGG | 0.440858 | 7.3:-9788068 | MS.gene24682:CDS |
| GTAGATTTCAAAATTCCCTT+AGG | 0.443534 | 7.3:+9788676 | None:intergenic |
| TTTGTGAAGGGAAGGTTTGT+TGG | 0.445919 | 7.3:-9788190 | MS.gene24682:CDS |
| TGTCTCTGTTTCTGAAACAA+TGG | 0.450703 | 7.3:+9789014 | None:intergenic |
| GCCATAAACCCACGAAGAAA+AGG | 0.461759 | 7.3:+9788838 | None:intergenic |
| ACGTTTGGATTATAGTCCTA+AGG | 0.462177 | 7.3:-9788692 | MS.gene24682:CDS |
| CATCAATGCTTGGGAACTCA+TGG | 0.467655 | 7.3:-9788920 | MS.gene24682:CDS |
| CTGTCTTCAACATCAATGCT+TGG | 0.469093 | 7.3:-9788930 | MS.gene24682:CDS |
| TATTGACTAAGAAACTTCAA+TGG | 0.475559 | 7.3:+9788799 | None:intergenic |
| TCTTCTCCTAAGAATTTGAA+AGG | 0.476501 | 7.3:-9788646 | MS.gene24682:CDS |
| ACCTTATTCTCTTTCCCCAA+TGG | 0.478528 | 7.3:+9788748 | None:intergenic |
| GTTTGAGAACAAGTGTCCTC+CGG | 0.478877 | 7.3:-9788410 | MS.gene24682:CDS |
| GAAACAACATGGTTAATGTA+AGG | 0.487432 | 7.3:+9789108 | None:intergenic |
| GGATGAGAAGCAAAAGAAAA+CGG | 0.491051 | 7.3:-9788020 | MS.gene24682:CDS |
| CTGTTGTGTTTGTGAAGGGA+AGG | 0.492747 | 7.3:-9788198 | MS.gene24682:CDS |
| GTGAAGGGAAGGTTTGTTGG+AGG | 0.493959 | 7.3:-9788187 | MS.gene24682:CDS |
| TGTCTTCAACATCAATGCTT+GGG | 0.495814 | 7.3:-9788929 | MS.gene24682:CDS |
| CTTCCCTTCACAAACACAAC+AGG | 0.496211 | 7.3:+9788199 | None:intergenic |
| TTAGGAGTTTGTGAAGGGTG+TGG | 0.502170 | 7.3:-9788094 | MS.gene24682:CDS |
| GATTATTGCATCCTATGAAA+AGG | 0.512501 | 7.3:-9788533 | MS.gene24682:CDS |
| ATTCTTAGGAGAAGAATTTG+TGG | 0.515792 | 7.3:+9788654 | None:intergenic |
| GGGAAGGTTTGTTGGAGGAG+TGG | 0.516015 | 7.3:-9788182 | MS.gene24682:CDS |
| CAAGTTACTAATATGGTAAG+AGG | 0.516161 | 7.3:-9788724 | MS.gene24682:CDS |
| TTTGAGAACAAGTGTCCTCC+GGG | 0.517587 | 7.3:-9788409 | MS.gene24682:CDS |
| TCACAAACTCCTAATGCCCT+TGG | 0.517790 | 7.3:+9788103 | None:intergenic |
| CTTCTCCTAAGAATTTGAAA+GGG | 0.521946 | 7.3:-9788645 | MS.gene24682:CDS |
| CGTTTGGATTATAGTCCTAA+GGG | 0.522025 | 7.3:-9788691 | MS.gene24682:CDS |
| GTTCTCAAACAAGTTCAAAA+GGG | 0.522310 | 7.3:+9788423 | None:intergenic |
| GTCTAACTTGAGTGCTCCAT+AGG | 0.522415 | 7.3:+9789071 | None:intergenic |
| CTCATGGAGGGTCTTGAAGA+AGG | 0.524126 | 7.3:-9788904 | MS.gene24682:CDS |
| ATCTACACTCAAGAAGCCAT+TGG | 0.526227 | 7.3:-9788764 | MS.gene24682:CDS |
| CCTTAATTCCTCCTTAAACC+CGG | 0.526472 | 7.3:+9788252 | None:intergenic |
| AAAGGACTAGGAACAGAACT+AGG | 0.541269 | 7.3:+9788568 | None:intergenic |
| AGGAATCAGAAAGACATTTG+AGG | 0.560056 | 7.3:-9788347 | MS.gene24682:CDS |
| GGAGTTTGTGAAGGGTGTGG+AGG | 0.564654 | 7.3:-9788091 | MS.gene24682:CDS |
| GTTTCTGGGTCTTTGTGTGG+TGG | 0.566731 | 7.3:+9788952 | None:intergenic |
| TGAAAAGGAACTTTCTGAAG+AGG | 0.568581 | 7.3:-9788518 | MS.gene24682:CDS |
| ATCTACACAACTACATTGAG+AGG | 0.576685 | 7.3:-9788367 | MS.gene24682:CDS |
| ACAGTTTCTGGGTCTTTGTG+TGG | 0.577868 | 7.3:+9788949 | None:intergenic |
| AGGGCATTAGGAGTTTGTGA+AGG | 0.584030 | 7.3:-9788100 | MS.gene24682:CDS |
| AGTTCCTGTTGTGTTTGTGA+AGG | 0.590978 | 7.3:-9788203 | MS.gene24682:CDS |
| CAATGCTTGGGAACTCATGG+AGG | 0.592089 | 7.3:-9788917 | MS.gene24682:CDS |
| TTTAGAGGAAACGCAACCCA+TGG | 0.597592 | 7.3:+9789164 | None:intergenic |
| GTTCCTGTTGTGTTTGTGAA+GGG | 0.598376 | 7.3:-9788202 | MS.gene24682:CDS |
| GGGCATTAGGAGTTTGTGAA+GGG | 0.600002 | 7.3:-9788099 | MS.gene24682:CDS |
| TCTGGATCAAACAAAGGACT+AGG | 0.611554 | 7.3:+9788556 | None:intergenic |
| ATAATCTCTGGATCAAACAA+AGG | 0.612151 | 7.3:+9788550 | None:intergenic |
| TATGGATTCCGGGTTTAAGG+AGG | 0.617441 | 7.3:-9788260 | MS.gene24682:CDS |
| GGATTGTAACAAAGTTCGAT+CGG | 0.623668 | 7.3:-9788326 | MS.gene24682:CDS |
| CAAAAGAAAACGGTTAAGTG+TGG | 0.630287 | 7.3:-9788010 | MS.gene24682:CDS |
| GTGATGTGTAAGGAATGTAA+TGG | 0.630771 | 7.3:-9788058 | MS.gene24682:CDS |
| GTTACTAATATGGTAAGAGG+TGG | 0.643768 | 7.3:-9788721 | MS.gene24682:CDS |
| AATGCTTGGGAACTCATGGA+GGG | 0.651425 | 7.3:-9788916 | MS.gene24682:CDS |
| CTACACTCAAGAAGCCATTG+GGG | 0.669155 | 7.3:-9788762 | MS.gene24682:CDS |
| AAGAAGTGAGAGAAACAACA+TGG | 0.688143 | 7.3:+9789097 | None:intergenic |
| AAACCCACGAAGAAAAGGTG+CGG | 0.704843 | 7.3:+9788843 | None:intergenic |
| GAGAACAAGTGTCCTCCGGG+AGG | 0.719709 | 7.3:-9788406 | MS.gene24682:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATGTAAGGATTTTTTTCT+TGG | + | chr7.3:9788008-9788027 | None:intergenic | 20.0% |
| ! | TGAAGTTTCTTAGTCAATAT+GGG | - | chr7.3:9788331-9788350 | MS.gene24682:CDS | 25.0% |
| ! | TGTGGTTATTGTAATGAAAA+TGG | - | chr7.3:9789134-9789153 | MS.gene24682:CDS | 25.0% |
| ! | TTGAAGTTTCTTAGTCAATA+TGG | - | chr7.3:9788330-9788349 | MS.gene24682:CDS | 25.0% |
| ! | TTGGAAGATGAAGATAAATT+AGG | - | chr7.3:9788981-9789000 | MS.gene24682:CDS | 25.0% |
| ! | TTTCTTGGGAAAATTTGAAA+TGG | + | chr7.3:9788253-9788272 | None:intergenic | 25.0% |
| !! | AGATAAATTAGGTGTTCTTT+TGG | - | chr7.3:9788992-9789011 | MS.gene24682:CDS | 25.0% |
| !! | TAAGGTTCAAGTTACTAATA+TGG | - | chr7.3:9788395-9788414 | MS.gene24682:CDS | 25.0% |
| !! | TATTGACTAAGAAACTTCAA+TGG | + | chr7.3:9788330-9788349 | None:intergenic | 25.0% |
| !! | TTCTTGGGAAAATTTGAAAT+GGG | + | chr7.3:9788252-9788271 | None:intergenic | 25.0% |
| !!! | TTCTTTTTTGATGTGTTTAG+AGG | + | chr7.3:9787980-9787999 | None:intergenic | 25.0% |
| AGTGGATGAAGTTATGAAAT+TGG | - | chr7.3:9788962-9788981 | MS.gene24682:CDS | 30.0% | |
| ATAATCTCTGGATCAAACAA+AGG | + | chr7.3:9788579-9788598 | None:intergenic | 30.0% | |
| ATTCTTAGGAGAAGAATTTG+TGG | + | chr7.3:9788475-9788494 | None:intergenic | 30.0% | |
| CAAGTTACTAATATGGTAAG+AGG | - | chr7.3:9788402-9788421 | MS.gene24682:CDS | 30.0% | |
| CTTCTCCTAAGAATTTGAAA+GGG | - | chr7.3:9788481-9788500 | MS.gene24682:CDS | 30.0% | |
| GAAACAACATGGTTAATGTA+AGG | + | chr7.3:9788021-9788040 | None:intergenic | 30.0% | |
| GATTATTGCATCCTATGAAA+AGG | - | chr7.3:9788593-9788612 | MS.gene24682:CDS | 30.0% | |
| GTAGATTTCAAAATTCCCTT+AGG | + | chr7.3:9788453-9788472 | None:intergenic | 30.0% | |
| GTTCTCAAACAAGTTCAAAA+GGG | + | chr7.3:9788706-9788725 | None:intergenic | 30.0% | |
| TCTTCTCCTAAGAATTTGAA+AGG | - | chr7.3:9788480-9788499 | MS.gene24682:CDS | 30.0% | |
| TGTTCTCAAACAAGTTCAAA+AGG | + | chr7.3:9788707-9788726 | None:intergenic | 30.0% | |
| ! | AAATTAGGTGTTCTTTTGGA+AGG | - | chr7.3:9788996-9789015 | MS.gene24682:CDS | 30.0% |
| ! | TAATGGAAGTTGTAAGGTTT+TGG | - | chr7.3:9789085-9789104 | MS.gene24682:CDS | 30.0% |
| ! | TTCAGAAAGTTCCTTTTCAT+AGG | + | chr7.3:9788607-9788626 | None:intergenic | 30.0% |
| !! | AATTAGGTGTTCTTTTGGAA+GGG | - | chr7.3:9788997-9789016 | MS.gene24682:CDS | 30.0% |
| !! | TGTTTCTGAAACAATGGAAT+TGG | + | chr7.3:9788109-9788128 | None:intergenic | 30.0% |
| AAGAAGTGAGAGAAACAACA+TGG | + | chr7.3:9788032-9788051 | None:intergenic | 35.0% | |
| ACGTTTGGATTATAGTCCTA+AGG | - | chr7.3:9788434-9788453 | MS.gene24682:CDS | 35.0% | |
| AGGAATCAGAAAGACATTTG+AGG | - | chr7.3:9788779-9788798 | MS.gene24682:CDS | 35.0% | |
| ATCTACACAACTACATTGAG+AGG | - | chr7.3:9788759-9788778 | MS.gene24682:CDS | 35.0% | |
| CAAAAGAAAACGGTTAAGTG+TGG | - | chr7.3:9789116-9789135 | MS.gene24682:CDS | 35.0% | |
| CGTTTGGATTATAGTCCTAA+GGG | - | chr7.3:9788435-9788454 | MS.gene24682:CDS | 35.0% | |
| GAGGAATTAAGGAAGCTTAT+GGG | - | chr7.3:9788885-9788904 | MS.gene24682:CDS | 35.0% | |
| GGATGAGAAGCAAAAGAAAA+CGG | - | chr7.3:9789106-9789125 | MS.gene24682:CDS | 35.0% | |
| GGATTGTAACAAAGTTCGAT+CGG | - | chr7.3:9788800-9788819 | MS.gene24682:CDS | 35.0% | |
| GTGATGTGTAAGGAATGTAA+TGG | - | chr7.3:9789068-9789087 | MS.gene24682:CDS | 35.0% | |
| GTTACTAATATGGTAAGAGG+TGG | - | chr7.3:9788405-9788424 | MS.gene24682:CDS | 35.0% | |
| TCATAGGATGCAATAATCTC+TGG | + | chr7.3:9788591-9788610 | None:intergenic | 35.0% | |
| TGATGTTGAAGACAGTTTCT+GGG | + | chr7.3:9788191-9788210 | None:intergenic | 35.0% | |
| TGTCTTCAACATCAATGCTT+GGG | - | chr7.3:9788197-9788216 | MS.gene24682:CDS | 35.0% | |
| TTGATGTTGAAGACAGTTTC+TGG | + | chr7.3:9788192-9788211 | None:intergenic | 35.0% | |
| ! | GGAATGTAATGGAAGTTGTA+AGG | - | chr7.3:9789079-9789098 | MS.gene24682:CDS | 35.0% |
| ! | TGAAAAGGAACTTTCTGAAG+AGG | - | chr7.3:9788608-9788627 | MS.gene24682:CDS | 35.0% |
| ! | TTTGAGGTTTGTGATGTGTA+AGG | - | chr7.3:9789058-9789077 | MS.gene24682:CDS | 35.0% |
| !! | TGTCTCTGTTTCTGAAACAA+TGG | + | chr7.3:9788115-9788134 | None:intergenic | 35.0% |
| AAAGGACTAGGAACAGAACT+AGG | + | chr7.3:9788561-9788580 | None:intergenic | 40.0% | |
| ACCTTATTCTCTTTCCCCAA+TGG | + | chr7.3:9788381-9788400 | None:intergenic | 40.0% | |
| AGTTCCTGTTGTGTTTGTGA+AGG | - | chr7.3:9788923-9788942 | MS.gene24682:CDS | 40.0% | |
| ATCTACACTCAAGAAGCCAT+TGG | - | chr7.3:9788362-9788381 | MS.gene24682:CDS | 40.0% | |
| CCTTAATTCCTCCTTAAACC+CGG | + | chr7.3:9788877-9788896 | None:intergenic | 40.0% | |
| CTGTCTTCAACATCAATGCT+TGG | - | chr7.3:9788196-9788215 | MS.gene24682:CDS | 40.0% | |
| CTGTTCCTTCTTGCAGAAAA+TGG | + | chr7.3:9788510-9788529 | None:intergenic | 40.0% | |
| GGAGACCCTTTCAAATTCTT+AGG | + | chr7.3:9788489-9788508 | None:intergenic | 40.0% | |
| GGAGGAATTAAGGAAGCTTA+TGG | - | chr7.3:9788884-9788903 | MS.gene24682:CDS | 40.0% | |
| GTTCCTGTTGTGTTTGTGAA+GGG | - | chr7.3:9788924-9788943 | MS.gene24682:CDS | 40.0% | |
| TCTACACTCAAGAAGCCATT+GGG | - | chr7.3:9788363-9788382 | MS.gene24682:CDS | 40.0% | |
| TCTCTCACTTCTTCAACCTA+TGG | - | chr7.3:9788039-9788058 | MS.gene24682:CDS | 40.0% | |
| TCTGGATCAAACAAAGGACT+AGG | + | chr7.3:9788573-9788592 | None:intergenic | 40.0% | |
| TTTGTGAAGGGAAGGTTTGT+TGG | - | chr7.3:9788936-9788955 | MS.gene24682:CDS | 40.0% | |
| ! | ACAACAGAATTTTCTCCTCC+CGG | + | chr7.3:9788738-9788757 | None:intergenic | 40.0% |
| ! | ACCTTTTCTTCGTGGGTTTA+TGG | - | chr7.3:9788287-9788306 | MS.gene24682:CDS | 40.0% |
| ! | CTGCAAGAAGGAACAGTTTT+GGG | - | chr7.3:9788514-9788533 | MS.gene24682:CDS | 40.0% |
| ! | GGCTTCTTGAGTGTAGATTT+TGG | + | chr7.3:9788360-9788379 | None:intergenic | 40.0% |
| ! | TCTGCAAGAAGGAACAGTTT+TGG | - | chr7.3:9788513-9788532 | MS.gene24682:CDS | 40.0% |
| ! | TTTCTCGCTCTTCGTGTTTT+GGG | + | chr7.3:9788666-9788685 | None:intergenic | 40.0% |
| ! | TTTTCTCGCTCTTCGTGTTT+TGG | + | chr7.3:9788667-9788686 | None:intergenic | 40.0% |
| !! | TCTTTTGGAAGGGATTCCAA+GGG | - | chr7.3:9789007-9789026 | MS.gene24682:CDS | 40.0% |
| !! | TTCTTTTGGAAGGGATTCCA+AGG | - | chr7.3:9789006-9789025 | MS.gene24682:CDS | 40.0% |
| AAACCCACGAAGAAAAGGTG+CGG | + | chr7.3:9788286-9788305 | None:intergenic | 45.0% | |
| AATGCTTGGGAACTCATGGA+GGG | - | chr7.3:9788210-9788229 | MS.gene24682:CDS | 45.0% | |
| CATCAATGCTTGGGAACTCA+TGG | - | chr7.3:9788206-9788225 | MS.gene24682:CDS | 45.0% | |
| CCGGGTTTAAGGAGGAATTA+AGG | - | chr7.3:9788874-9788893 | MS.gene24682:CDS | 45.0% | |
| CGTGATGTGTCTATGGATTC+CGG | - | chr7.3:9788855-9788874 | MS.gene24682:CDS | 45.0% | |
| CTACACTCAAGAAGCCATTG+GGG | - | chr7.3:9788364-9788383 | MS.gene24682:CDS | 45.0% | |
| CTGTTGTGTTTGTGAAGGGA+AGG | - | chr7.3:9788928-9788947 | MS.gene24682:CDS | 45.0% | |
| CTTCCCTTCACAAACACAAC+AGG | + | chr7.3:9788930-9788949 | None:intergenic | 45.0% | |
| GCCATAAACCCACGAAGAAA+AGG | + | chr7.3:9788291-9788310 | None:intergenic | 45.0% | |
| GCCATTGGGGAAAGAGAATA+AGG | - | chr7.3:9788377-9788396 | MS.gene24682:CDS | 45.0% | |
| GGGCATTAGGAGTTTGTGAA+GGG | - | chr7.3:9789027-9789046 | MS.gene24682:CDS | 45.0% | |
| GTCTAACTTGAGTGCTCCAT+AGG | + | chr7.3:9788058-9788077 | None:intergenic | 45.0% | |
| GTCTATGGATTCCGGGTTTA+AGG | - | chr7.3:9788863-9788882 | MS.gene24682:CDS | 45.0% | |
| GTGATGTGTCTATGGATTCC+GGG | - | chr7.3:9788856-9788875 | MS.gene24682:CDS | 45.0% | |
| GTTTGAGAACAAGTGTCCTC+CGG | - | chr7.3:9788716-9788735 | MS.gene24682:CDS | 45.0% | |
| TATGGATTCCGGGTTTAAGG+AGG | - | chr7.3:9788866-9788885 | MS.gene24682:CDS | 45.0% | |
| TCACAAACTCCTAATGCCCT+TGG | + | chr7.3:9789026-9789045 | None:intergenic | 45.0% | |
| TTAGGAGTTTGTGAAGGGTG+TGG | - | chr7.3:9789032-9789051 | MS.gene24682:CDS | 45.0% | |
| TTTGAGAACAAGTGTCCTCC+GGG | - | chr7.3:9788717-9788736 | MS.gene24682:CDS | 45.0% | |
| ! | AAGAGGTGGTGTTAGACGTT+TGG | - | chr7.3:9788419-9788438 | MS.gene24682:CDS | 45.0% |
| ! | ACAGTTTCTGGGTCTTTGTG+TGG | + | chr7.3:9788180-9788199 | None:intergenic | 45.0% |
| ! | AGGGCATTAGGAGTTTGTGA+AGG | - | chr7.3:9789026-9789045 | MS.gene24682:CDS | 45.0% |
| ! | GAAGAAAAGGTGCGGACTTT+GGG | + | chr7.3:9788278-9788297 | None:intergenic | 45.0% |
| ! | GGTCTCCATTTTCTGCAAGA+AGG | - | chr7.3:9788502-9788521 | MS.gene24682:CDS | 45.0% |
| !! | GGTGGTGATGGGTTTGATTT+GGG | + | chr7.3:9788159-9788178 | None:intergenic | 45.0% |
| !! | TGGTGGTGATGGGTTTGATT+TGG | + | chr7.3:9788160-9788179 | None:intergenic | 45.0% |
| CAATGCTTGGGAACTCATGG+AGG | - | chr7.3:9788209-9788228 | MS.gene24682:CDS | 50.0% | |
| CTCATGGAGGGTCTTGAAGA+AGG | - | chr7.3:9788222-9788241 | MS.gene24682:CDS | 50.0% | |
| ! | AAGTCCGCACCTTTTCTTCG+TGG | - | chr7.3:9788279-9788298 | MS.gene24682:CDS | 50.0% |
| ! | ACAGAATTTTCTCCTCCCGG+AGG | + | chr7.3:9788735-9788754 | None:intergenic | 50.0% |
| ! | AGTCCGCACCTTTTCTTCGT+GGG | - | chr7.3:9788280-9788299 | MS.gene24682:CDS | 50.0% |
| ! | CGAAGAAAAGGTGCGGACTT+TGG | + | chr7.3:9788279-9788298 | None:intergenic | 50.0% |
| ! | GCGGACTTTGGGCTTTTCTT+GGG | + | chr7.3:9788267-9788286 | None:intergenic | 50.0% |
| ! | GGTCTTTGTGTGGTGGTGAT+GGG | + | chr7.3:9788170-9788189 | None:intergenic | 50.0% |
| ! | GTTTCTGGGTCTTTGTGTGG+TGG | + | chr7.3:9788177-9788196 | None:intergenic | 50.0% |
| ! | TGCGGACTTTGGGCTTTTCT+TGG | + | chr7.3:9788268-9788287 | None:intergenic | 50.0% |
| !! | GAAGGGATTCCAAGGGCATT+AGG | - | chr7.3:9789014-9789033 | MS.gene24682:CDS | 50.0% |
| !! | GTGAAGGGAAGGTTTGTTGG+AGG | - | chr7.3:9788939-9788958 | MS.gene24682:CDS | 50.0% |
| ! | GGAGTTTGTGAAGGGTGTGG+AGG | - | chr7.3:9789035-9789054 | MS.gene24682:CDS | 55.0% |
| ! | GGGTCTTTGTGTGGTGGTGA+TGG | + | chr7.3:9788171-9788190 | None:intergenic | 55.0% |
| ! | GTGAAGGGTGTGGAGGTTTG+AGG | - | chr7.3:9789042-9789061 | MS.gene24682:CDS | 55.0% |
| !! | GGGAAGGTTTGTTGGAGGAG+TGG | - | chr7.3:9788944-9788963 | MS.gene24682:CDS | 55.0% |
| GAGAACAAGTGTCCTCCGGG+AGG | - | chr7.3:9788720-9788739 | MS.gene24682:CDS | 60.0% | |
| GCGCGAGCGTGATGTGTCTA+TGG | - | chr7.3:9788848-9788867 | MS.gene24682:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 9787964 | 9789184 | 9787964 | ID=MS.gene24682 |
| chr7.3 | mRNA | 9787964 | 9789184 | 9787964 | ID=MS.gene24682.t1;Parent=MS.gene24682 |
| chr7.3 | exon | 9787964 | 9789184 | 9787964 | ID=MS.gene24682.t1.exon1;Parent=MS.gene24682.t1 |
| chr7.3 | CDS | 9787964 | 9789184 | 9787964 | ID=cds.MS.gene24682.t1;Parent=MS.gene24682.t1 |
| Gene Sequence |
| Protein sequence |
