AlfalfaGEDB | MS.gene24682

M. sativa cultivar XinJiangDaYe / MS.gene24682

KEGG: K17479
GO: GO:0003674 GO:0003824 GO:0008150 GO:0009055 GO:0009987 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0019725 GO:0042592 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008
PFAM: PF00462.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24682.t1	XP_003625833.1	98.3	406	6	1	1	406	1	405	4.10E-206	727.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24682.t1	Q9FLE8	40.8	184	87	4	243	406	208	389	3.9e-32	140.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24682.t1	G7KQV9	98.3	406	6	1	1	406	1	405	2.9e-206	727.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049418	MS.gene24682	0.814661	1.38E-51	-1.69E-46
MS.gene04985	MS.gene24682	0.80979	1.59E-50	-1.69E-46
MS.gene049989	MS.gene24682	0.841409	4.84E-58	-1.69E-46
MS.gene050297	MS.gene24682	0.841889	3.61E-58	-1.69E-46
MS.gene050310	MS.gene24682	0.914517	1.75E-84	-1.69E-46
MS.gene050648	MS.gene24682	0.833558	4.98E-56	-1.69E-46
MS.gene051067	MS.gene24682	0.820924	5.30E-53	-1.69E-46
MS.gene051263	MS.gene24682	0.802337	5.88E-49	-1.69E-46
MS.gene051478	MS.gene24682	0.841665	4.14E-58	-1.69E-46
MS.gene053536	MS.gene24682	0.824367	8.39E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24682.t1	MTR_7g104720	98.030	406	7	1	1	406	1	405	0.0	806
MS.gene24682.t1	MTR_1g090400	44.076	211	114	3	197	405	160	368	2.30e-53	182
MS.gene24682.t1	MTR_8g106900	54.819	166	68	3	247	405	108	273	8.22e-47	162
MS.gene24682.t1	MTR_7g090230	31.920	401	210	13	22	406	72	425	9.52e-47	166
MS.gene24682.t1	MTR_7g106500	42.564	195	98	4	222	406	89	279	1.07e-44	156
MS.gene24682.t1	MTR_5g083110	49.333	150	74	2	257	405	90	238	2.14e-41	147
MS.gene24682.t1	MTR_8g099665	43.373	166	85	2	249	405	202	367	7.96e-41	149
MS.gene24682.t1	MTR_3g017490	45.270	148	79	1	260	405	113	260	1.66e-40	145
MS.gene24682.t1	MTR_8g038440	47.712	153	75	2	259	406	103	255	3.32e-40	144
MS.gene24682.t1	MTR_1g051180	44.444	162	79	2	256	406	203	364	7.97e-39	143

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24682.t1	AT5G03870	47.962	417	171	14	1	405	1	383	1.00e-96	294
MS.gene24682.t1	AT4G10630	48.634	183	79	4	237	405	152	333	7.95e-48	166
MS.gene24682.t1	AT5G06470	46.988	166	80	2	247	405	74	238	7.93e-46	158
MS.gene24682.t1	AT3G57070	32.360	411	199	14	22	406	59	416	9.72e-46	163
MS.gene24682.t1	AT2G41330	30.318	409	196	12	22	406	58	401	1.00e-42	154
MS.gene24682.t1	AT5G01420	48.718	156	77	3	252	405	246	400	1.76e-41	151
MS.gene24682.t1	AT1G32760	55.128	156	61	3	259	405	158	313	5.81e-41	147
MS.gene24682.t1	AT1G64500	45.509	167	81	4	249	405	199	365	2.86e-40	147
MS.gene24682.t1	AT5G13810	46.000	150	79	2	258	405	123	272	5.85e-39	141
MS.gene24682.t1	AT5G58530	45.570	158	75	3	258	405	109	265	1.50e-38	140

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Find 96 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCACGAAGAAAAGGTG+CGG	0.704843	7.3:+9788843	None:intergenic
AAAGGACTAGGAACAGAACT+AGG	0.541269	7.3:+9788568	None:intergenic
AAGAAGTGAGAGAAACAACA+TGG	0.688143	7.3:+9789097	None:intergenic
AAGAGGTGGTGTTAGACGTT+TGG	0.372997	7.3:-9788707	MS.gene24682:CDS
AATGCTTGGGAACTCATGGA+GGG	0.651425	7.3:-9788916	MS.gene24682:CDS
ACAGTTTCTGGGTCTTTGTG+TGG	0.577868	7.3:+9788949	None:intergenic
ACCTTATTCTCTTTCCCCAA+TGG	0.478528	7.3:+9788748	None:intergenic
ACGTTTGGATTATAGTCCTA+AGG	0.462177	7.3:-9788692	MS.gene24682:CDS
AGATAAATTAGGTGTTCTTT+TGG	0.307593	7.3:-9788134	MS.gene24682:CDS
AGGAATCAGAAAGACATTTG+AGG	0.560056	7.3:-9788347	MS.gene24682:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTGGATGAAGTTATGAAAT+TGG	-	chr7.3:9788962-9788981	MS.gene24682:CDS	30.0%
ATAATCTCTGGATCAAACAA+AGG	+	chr7.3:9788579-9788598	None:intergenic	30.0%
ATTCTTAGGAGAAGAATTTG+TGG	+	chr7.3:9788475-9788494	None:intergenic	30.0%
CAAGTTACTAATATGGTAAG+AGG	-	chr7.3:9788402-9788421	MS.gene24682:CDS	30.0%
CTTCTCCTAAGAATTTGAAA+GGG	-	chr7.3:9788481-9788500	MS.gene24682:CDS	30.0%
GAAACAACATGGTTAATGTA+AGG	+	chr7.3:9788021-9788040	None:intergenic	30.0%
GATTATTGCATCCTATGAAA+AGG	-	chr7.3:9788593-9788612	MS.gene24682:CDS	30.0%
GTAGATTTCAAAATTCCCTT+AGG	+	chr7.3:9788453-9788472	None:intergenic	30.0%
GTTCTCAAACAAGTTCAAAA+GGG	+	chr7.3:9788706-9788725	None:intergenic	30.0%
TCTTCTCCTAAGAATTTGAA+AGG	-	chr7.3:9788480-9788499	MS.gene24682:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	9787964	9789184	9787964	ID=MS.gene24682
chr7.3	mRNA	9787964	9789184	9787964	ID=MS.gene24682.t1;Parent=MS.gene24682
chr7.3	exon	9787964	9789184	9787964	ID=MS.gene24682.t1.exon1;Parent=MS.gene24682.t1
chr7.3	CDS	9787964	9789184	9787964	ID=cds.MS.gene24682.t1;Parent=MS.gene24682.t1

Gene Sequence

>MS.gene24682

ATGGGTTGCGTTTCCTCTAAACACATCAAAAAAGAAATCAACCAAGAAAAAAATCCTTACATTAACCATGTTGTTTCTCTCACTTCTTCAACCTATGGAGCACTCAAGTTAGACAACAACAACAACAACAACAATGAATCATCCAATTCCATTGTTTCAGAAACAGAGACACAAACAGAGTCAAAAACAGAACCCAAATCAAACCCATCACCACCACACAAAGACCCAGAAACTGTCTTCAACATCAATGCTTGGGAACTCATGGAGGGTCTTGAAGAAGGAGTGCCCATTTCAAATTTTCCCAAGAAAAGCCCAAAGTCCGCACCTTTTCTTCGTGGGTTTATGGCTTCTGACACAAGAAGTCCATTGAAGTTTCTTAGTCAATATGGGTCACCAAAATCTACACTCAAGAAGCCATTGGGGAAAGAGAATAAGGTTCAAGTTACTAATATGGTAAGAGGTGGTGTTAGACGTTTGGATTATAGTCCTAAGGGAATTTTGAAATCTACCACAAATTCTTCTCCTAAGAATTTGAAAGGGTCTCCATTTTCTGCAAGAAGGAACAGTTTTGGGAATGAGAGTGTGAGAAAAAGTCCTAGTTCTGTTCCTAGTCCTTTGTTTGATCCAGAGATTATTGCATCCTATGAAAAGGAACTTTCTGAAGAGGAAGAACAAATCAAGAGAATTGTTTTTGCAACACCCAAAACACGAAGAGCGAGAAAATCTCTTGATTCAATTGCCCTTTTGAACTTGTTTGAGAACAAGTGTCCTCCGGGAGGAGAAAATTCTGTTGTAATCTACACAACTACATTGAGAGGAATCAGAAAGACATTTGAGGATTGTAACAAAGTTCGATCGGTCATTGAATCGTATTGTGTGTGTTTGCGCGAGCGTGATGTGTCTATGGATTCCGGGTTTAAGGAGGAATTAAGGAAGCTTATGGGAATGAAACAAGTTCAAGTTCCTGTTGTGTTTGTGAAGGGAAGGTTTGTTGGAGGAGTGGATGAAGTTATGAAATTGGAAGATGAAGATAAATTAGGTGTTCTTTTGGAAGGGATTCCAAGGGCATTAGGAGTTTGTGAAGGGTGTGGAGGTTTGAGGTTTGTGATGTGTAAGGAATGTAATGGAAGTTGTAAGGTTTTGGATGAGAAGCAAAAGAAAACGGTTAAGTGTGGTTATTGTAATGAAAATGGAATAATTAGATGCTCTTTATGTTGTTGA

Protein sequence

>MS.gene24682.t1

MGCVSSKHIKKEINQEKNPYINHVVSLTSSTYGALKLDNNNNNNNESSNSIVSETETQTESKTEPKSNPSPPHKDPETVFNINAWELMEGLEEGVPISNFPKKSPKSAPFLRGFMASDTRSPLKFLSQYGSPKSTLKKPLGKENKVQVTNMVRGGVRRLDYSPKGILKSTTNSSPKNLKGSPFSARRNSFGNESVRKSPSSVPSPLFDPEIIASYEKELSEEEEQIKRIVFATPKTRRARKSLDSIALLNLFENKCPPGGENSVVIYTTTLRGIRKTFEDCNKVRSVIESYCVCLRERDVSMDSGFKEELRKLMGMKQVQVPVVFVKGRFVGGVDEVMKLEDEDKLGVLLEGIPRALGVCEGCGGLRFVMCKECNGSCKVLDEKQKKTVKCGYCNENGIIRCSLCC