Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24737.t1 | XP_003625811.1 | 99.3 | 419 | 3 | 0 | 1 | 419 | 1 | 419 | 3.00E-236 | 827.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24737.t1 | Q9ZW88 | 63.0 | 419 | 155 | 0 | 1 | 419 | 1 | 419 | 2.5e-151 | 536.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24737.t1 | G7L632 | 99.3 | 419 | 3 | 0 | 1 | 419 | 1 | 419 | 2.1e-236 | 827.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049217 | MS.gene24737 | -0.807492 | 4.92E-50 | -1.69E-46 |
MS.gene050325 | MS.gene24737 | 0.988039 | 1.76E-172 | -1.69E-46 |
MS.gene050327 | MS.gene24737 | 0.991247 | 1.20E-186 | -1.69E-46 |
MS.gene050772 | MS.gene24737 | -0.802781 | 4.77E-49 | -1.69E-46 |
MS.gene051858 | MS.gene24737 | -0.815891 | 7.33E-52 | -1.69E-46 |
MS.gene054003 | MS.gene24737 | -0.812712 | 3.69E-51 | -1.69E-46 |
MS.gene055577 | MS.gene24737 | -0.805284 | 1.44E-49 | -1.69E-46 |
MS.gene057173 | MS.gene24737 | 0.816918 | 4.32E-52 | -1.69E-46 |
MS.gene057416 | MS.gene24737 | -0.800904 | 1.16E-48 | -1.69E-46 |
MS.gene059902 | MS.gene24737 | -0.816595 | 5.10E-52 | -1.69E-46 |
MS.gene060482 | MS.gene24737 | -0.800415 | 1.46E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24737.t1 | MTR_7g104490 | 99.284 | 419 | 3 | 0 | 1 | 419 | 1 | 419 | 0.0 | 845 |
MS.gene24737.t1 | MTR_1g060040 | 71.360 | 419 | 120 | 0 | 1 | 419 | 1 | 419 | 0.0 | 589 |
MS.gene24737.t1 | MTR_4g053260 | 63.723 | 419 | 152 | 0 | 1 | 419 | 2 | 420 | 0.0 | 556 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24737.t1 | AT1G67190 | 63.007 | 419 | 155 | 0 | 1 | 419 | 1 | 419 | 0.0 | 528 |
MS.gene24737.t1 | AT1G67190 | 63.007 | 419 | 155 | 0 | 1 | 419 | 1 | 419 | 0.0 | 528 |
Find 63 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAATCTGACATGGCGATTTC+TGG | 0.152383 | 7.4:+7560279 | None:intergenic |
TTCTCAATGATATTGAAATT+AGG | 0.193329 | 7.4:+7560486 | None:intergenic |
AATCATGAATTCAGTGAATT+TGG | 0.195737 | 7.4:+7559642 | None:intergenic |
TCTCAATGATATTGAAATTA+GGG | 0.201362 | 7.4:+7560487 | None:intergenic |
AGAGCAAATTTCGCGATATA+GGG | 0.320402 | 7.4:+7560677 | None:intergenic |
CATCCTTAACTTGCAAGAAA+TGG | 0.324453 | 7.4:-7560755 | MS.gene24737:CDS |
AAAGATGGAGTGCTTCATTA+TGG | 0.324477 | 7.4:-7559844 | MS.gene24737:CDS |
TAGAGCAAATTTCGCGATAT+AGG | 0.327459 | 7.4:+7560676 | None:intergenic |
AGTTTGGGTAGCTGGACTTT+TGG | 0.334910 | 7.4:-7559746 | MS.gene24737:CDS |
CTGTTACCCCTGTCATTGCT+TGG | 0.349306 | 7.4:-7560563 | MS.gene24737:CDS |
ATGTATTGAATGAAAGAGTT+TGG | 0.353897 | 7.4:+7560709 | None:intergenic |
ATAGACAAGGTTTCAAGTTT+CGG | 0.358073 | 7.4:+7560309 | None:intergenic |
TCTCCATTTCTTGCAAGTTA+AGG | 0.360964 | 7.4:+7560752 | None:intergenic |
ATCTTTCAAGTCATAACTTA+AGG | 0.368328 | 7.4:+7559861 | None:intergenic |
GCTTAGCAGCTCTTCTTTGA+AGG | 0.394764 | 7.4:-7560241 | MS.gene24737:CDS |
TTAAGTTATGACTTGAAAGA+TGG | 0.408134 | 7.4:-7559859 | MS.gene24737:CDS |
CTTGGCTAGCAATCCTATCT+CGG | 0.423380 | 7.4:-7560433 | MS.gene24737:CDS |
TGTTAGGCGCTGCAATCCTT+TGG | 0.433874 | 7.4:+7560614 | None:intergenic |
GTATCATATTATCCCATCTT+GGG | 0.437104 | 7.4:-7560800 | MS.gene24737:CDS |
GTGCTTCATTATGGCTTACA+AGG | 0.443213 | 7.4:-7559835 | MS.gene24737:CDS |
CGAAATTTGCTCTAGTCACT+TGG | 0.446849 | 7.4:-7560667 | MS.gene24737:CDS |
ATGATACCGACCACTTCAAC+AGG | 0.448381 | 7.4:+7560816 | None:intergenic |
AAGGAAAGGTGCGTTAATCT+AGG | 0.450642 | 7.4:+7559880 | None:intergenic |
TACATAAGCCAAGCAATGAC+AGG | 0.467063 | 7.4:+7560555 | None:intergenic |
TATCCCATCTTGGGTCTGCT+AGG | 0.472254 | 7.4:-7560791 | MS.gene24737:CDS |
GGTATCATATTATCCCATCT+TGG | 0.475174 | 7.4:-7560801 | MS.gene24737:CDS |
ATCCCATCTTGGGTCTGCTA+GGG | 0.476732 | 7.4:-7560790 | MS.gene24737:CDS |
CATCATCCATGAAAATTGTT+AGG | 0.477751 | 7.4:+7560598 | None:intergenic |
TCTAGGAAAACAAACAGATA+TGG | 0.480581 | 7.4:+7559897 | None:intergenic |
TTCGGCTCAACACCCGAGAT+AGG | 0.481385 | 7.4:+7560420 | None:intergenic |
CATCCCTAGCAGACCCAAGA+TGG | 0.487907 | 7.4:+7560787 | None:intergenic |
AATGTGGTTGTGTTAGAACT+TGG | 0.510674 | 7.4:-7559796 | MS.gene24737:CDS |
CAAGGAAATTTATGATACTT+CGG | 0.514673 | 7.4:+7560402 | None:intergenic |
GTTCGAGTTTGAATATGAGT+AGG | 0.522810 | 7.4:-7559590 | None:intergenic |
GATCAATTCAAAAGCATCAA+AGG | 0.535278 | 7.4:+7560137 | None:intergenic |
TTGGCTAGCAATCCTATCTC+GGG | 0.539654 | 7.4:-7560432 | MS.gene24737:CDS |
CTCAATGATATTGAAATTAG+GGG | 0.540853 | 7.4:+7560488 | None:intergenic |
TGTGTAACTTCATATTTATG+TGG | 0.543217 | 7.4:-7560020 | MS.gene24737:CDS |
TCAAGTCATAACTTAAGGAA+AGG | 0.545749 | 7.4:+7559866 | None:intergenic |
TATTATCTCCAATGTCAAGA+TGG | 0.549282 | 7.4:+7560067 | None:intergenic |
GCAAGAAATGGAGAGAAGCT+TGG | 0.560253 | 7.4:-7560743 | MS.gene24737:CDS |
AGTGTCATCCATCTTGACAT+TGG | 0.562714 | 7.4:-7560075 | MS.gene24737:CDS |
TACACACATCTACGATCTCA+AGG | 0.565105 | 7.4:+7560037 | None:intergenic |
TTTCATTCAATACATCTGAC+TGG | 0.565276 | 7.4:-7560701 | MS.gene24737:CDS |
AATCGCCATGTCAGATTCAG+AGG | 0.567446 | 7.4:-7560274 | MS.gene24737:CDS |
ACTGAATTCATGATTCAACT+AGG | 0.580130 | 7.4:-7559634 | MS.gene24737:CDS |
ATCCCTAGCAGACCCAAGAT+GGG | 0.587597 | 7.4:+7560788 | None:intergenic |
TGGTTGTGTTAGAACTTGGA+TGG | 0.588684 | 7.4:-7559792 | MS.gene24737:CDS |
GAGCAAATTTCGCGATATAG+GGG | 0.592223 | 7.4:+7560678 | None:intergenic |
GGAGGATCTTCCTGTTGAAG+TGG | 0.592625 | 7.4:-7560826 | MS.gene24737:CDS |
AACGACAGCGACTTCAAGCA+AGG | 0.592920 | 7.4:+7560384 | None:intergenic |
ATATCATTGAGAAATGCAGC+AGG | 0.597773 | 7.4:-7560476 | MS.gene24737:CDS |
TTCTGGACAAACAATAGACA+AGG | 0.600718 | 7.4:+7560296 | None:intergenic |
TGCTTCATTATGGCTTACAA+GGG | 0.605298 | 7.4:-7559834 | MS.gene24737:CDS |
TGCTTGGCTTATGTATACGA+GGG | 0.608384 | 7.4:-7560547 | MS.gene24737:CDS |
TATTGAATGAAAGAGTTTGG+AGG | 0.609653 | 7.4:+7560712 | None:intergenic |
TGATAAACTCATATTAGTGG+CGG | 0.615767 | 7.4:-7560193 | MS.gene24737:CDS |
ACATAAGCCAAGCAATGACA+GGG | 0.628082 | 7.4:+7560556 | None:intergenic |
GATCTTCCTGTTGAAGTGGT+CGG | 0.634333 | 7.4:-7560822 | MS.gene24737:CDS |
TGAAGCCTCTGAATCTGACA+TGG | 0.638655 | 7.4:+7560269 | None:intergenic |
TTGCTTGGCTTATGTATACG+AGG | 0.648455 | 7.4:-7560548 | MS.gene24737:CDS |
CGAGATAGGATTGCTAGCCA+AGG | 0.649589 | 7.4:+7560434 | None:intergenic |
CATAAGCCAAGCAATGACAG+GGG | 0.741525 | 7.4:+7560557 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCTCAATGATATTGAAATTA+GGG | + | chr7.4:7559935-7559954 | None:intergenic | 20.0% |
!! | TTCTCAATGATATTGAAATT+AGG | + | chr7.4:7559936-7559955 | None:intergenic | 20.0% |
!!! | TTTTGATAAACTCATATTAG+TGG | - | chr7.4:7560223-7560242 | MS.gene24737:CDS | 20.0% |
! | AATCATGAATTCAGTGAATT+TGG | + | chr7.4:7560780-7560799 | None:intergenic | 25.0% |
! | ATGTATTGAATGAAAGAGTT+TGG | + | chr7.4:7559713-7559732 | None:intergenic | 25.0% |
! | ATGTCCTAATCTTAAAAAGA+TGG | - | chr7.4:7560700-7560719 | MS.gene24737:CDS | 25.0% |
! | CAAGGAAATTTATGATACTT+CGG | + | chr7.4:7560020-7560039 | None:intergenic | 25.0% |
! | CTCAATGATATTGAAATTAG+GGG | + | chr7.4:7559934-7559953 | None:intergenic | 25.0% |
! | CTTAAAAAGATGGTCATTTA+TGG | - | chr7.4:7560710-7560729 | MS.gene24737:CDS | 25.0% |
! | TGTGTAACTTCATATTTATG+TGG | - | chr7.4:7560399-7560418 | MS.gene24737:CDS | 25.0% |
! | TTAAGTTATGACTTGAAAGA+TGG | - | chr7.4:7560560-7560579 | MS.gene24737:CDS | 25.0% |
!! | ATCTTTCAAGTCATAACTTA+AGG | + | chr7.4:7560561-7560580 | None:intergenic | 25.0% |
!! | CTTTTGAATTGATCAATAAG+GGG | - | chr7.4:7560291-7560310 | MS.gene24737:CDS | 25.0% |
!! | GCTTTTGAATTGATCAATAA+GGG | - | chr7.4:7560290-7560309 | MS.gene24737:CDS | 25.0% |
!! | TGCTTTTGAATTGATCAATA+AGG | - | chr7.4:7560289-7560308 | MS.gene24737:CDS | 25.0% |
!!! | ATGACCATCTTTTTAAGATT+AGG | + | chr7.4:7560707-7560726 | None:intergenic | 25.0% |
ACTGAATTCATGATTCAACT+AGG | - | chr7.4:7560785-7560804 | MS.gene24737:CDS | 30.0% | |
CATCATCCATGAAAATTGTT+AGG | + | chr7.4:7559824-7559843 | None:intergenic | 30.0% | |
CGTCAAAGTTAAAAAAGCTT+CGG | - | chr7.4:7560450-7560469 | MS.gene24737:CDS | 30.0% | |
GTATCATATTATCCCATCTT+GGG | - | chr7.4:7559619-7559638 | MS.gene24737:CDS | 30.0% | |
TATTATCTCCAATGTCAAGA+TGG | + | chr7.4:7560355-7560374 | None:intergenic | 30.0% | |
TATTGAATGAAAGAGTTTGG+AGG | + | chr7.4:7559710-7559729 | None:intergenic | 30.0% | |
TCAAGTCATAACTTAAGGAA+AGG | + | chr7.4:7560556-7560575 | None:intergenic | 30.0% | |
TCTAGGAAAACAAACAGATA+TGG | + | chr7.4:7560525-7560544 | None:intergenic | 30.0% | |
TGATAAACTCATATTAGTGG+CGG | - | chr7.4:7560226-7560245 | MS.gene24737:CDS | 30.0% | |
TTTCATTCAATACATCTGAC+TGG | - | chr7.4:7559718-7559737 | MS.gene24737:CDS | 30.0% | |
!! | ATAGACAAGGTTTCAAGTTT+CGG | + | chr7.4:7560113-7560132 | None:intergenic | 30.0% |
!! | GATCAATTCAAAAGCATCAA+AGG | + | chr7.4:7560285-7560304 | None:intergenic | 30.0% |
!!! | TGTACACTTTTTCAAACCAA+AGG | - | chr7.4:7559789-7559808 | MS.gene24737:CDS | 30.0% |
AATGTGGTTGTGTTAGAACT+TGG | - | chr7.4:7560623-7560642 | MS.gene24737:CDS | 35.0% | |
AGAGCAAATTTCGCGATATA+GGG | + | chr7.4:7559745-7559764 | None:intergenic | 35.0% | |
ATATCATTGAGAAATGCAGC+AGG | - | chr7.4:7559943-7559962 | MS.gene24737:CDS | 35.0% | |
GGTATCATATTATCCCATCT+TGG | - | chr7.4:7559618-7559637 | MS.gene24737:CDS | 35.0% | |
TAGAGCAAATTTCGCGATAT+AGG | + | chr7.4:7559746-7559765 | None:intergenic | 35.0% | |
TCTCCATTTCTTGCAAGTTA+AGG | + | chr7.4:7559670-7559689 | None:intergenic | 35.0% | |
TGCTTCATTATGGCTTACAA+GGG | - | chr7.4:7560585-7560604 | MS.gene24737:CDS | 35.0% | |
TTCTGGACAAACAATAGACA+AGG | + | chr7.4:7560126-7560145 | None:intergenic | 35.0% | |
! | AAAGATGGAGTGCTTCATTA+TGG | - | chr7.4:7560575-7560594 | MS.gene24737:CDS | 35.0% |
! | CAGTGATCTTTTCTCAGTTT+GGG | - | chr7.4:7560658-7560677 | MS.gene24737:CDS | 35.0% |
! | GTTGTCTTTTCTGATGAATG+TGG | - | chr7.4:7560607-7560626 | MS.gene24737:CDS | 35.0% |
! | TCAGTGATCTTTTCTCAGTT+TGG | - | chr7.4:7560657-7560676 | MS.gene24737:CDS | 35.0% |
!! | CATCCTTAACTTGCAAGAAA+TGG | - | chr7.4:7559664-7559683 | MS.gene24737:CDS | 35.0% |
ACATAAGCCAAGCAATGACA+GGG | + | chr7.4:7559866-7559885 | None:intergenic | 40.0% | |
AGTGTCATCCATCTTGACAT+TGG | - | chr7.4:7560344-7560363 | MS.gene24737:CDS | 40.0% | |
AGTTAAAAAAGCTTCGGCTG+TGG | - | chr7.4:7560456-7560475 | MS.gene24737:CDS | 40.0% | |
GAAATGCAGCAGGAAAAAGT+TGG | - | chr7.4:7559953-7559972 | MS.gene24737:CDS | 40.0% | |
GAGCAAATTTCGCGATATAG+GGG | + | chr7.4:7559744-7559763 | None:intergenic | 40.0% | |
GTGCTTCATTATGGCTTACA+AGG | - | chr7.4:7560584-7560603 | MS.gene24737:CDS | 40.0% | |
TACACACATCTACGATCTCA+AGG | + | chr7.4:7560385-7560404 | None:intergenic | 40.0% | |
TACATAAGCCAAGCAATGAC+AGG | + | chr7.4:7559867-7559886 | None:intergenic | 40.0% | |
TGCTTGGCTTATGTATACGA+GGG | - | chr7.4:7559872-7559891 | MS.gene24737:CDS | 40.0% | |
TGGTTGTGTTAGAACTTGGA+TGG | - | chr7.4:7560627-7560646 | MS.gene24737:CDS | 40.0% | |
TTGCTTGGCTTATGTATACG+AGG | - | chr7.4:7559871-7559890 | MS.gene24737:CDS | 40.0% | |
! | AAGGAAAGGTGCGTTAATCT+AGG | + | chr7.4:7560542-7560561 | None:intergenic | 40.0% |
! | CGAAATTTGCTCTAGTCACT+TGG | - | chr7.4:7559752-7559771 | MS.gene24737:CDS | 40.0% |
! | TTTTGTTAGCATCTCAGCGT+TGG | - | chr7.4:7560061-7560080 | MS.gene24737:CDS | 40.0% |
!! | AAAGTTGGAGGTTTTGACCT+TGG | - | chr7.4:7559968-7559987 | MS.gene24737:CDS | 40.0% |
AATCGCCATGTCAGATTCAG+AGG | - | chr7.4:7560145-7560164 | MS.gene24737:CDS | 45.0% | |
ATGATACCGACCACTTCAAC+AGG | + | chr7.4:7559606-7559625 | None:intergenic | 45.0% | |
ATGCAGCAGGAAAAAGTTGG+AGG | - | chr7.4:7559956-7559975 | MS.gene24737:CDS | 45.0% | |
CATAAGCCAAGCAATGACAG+GGG | + | chr7.4:7559865-7559884 | None:intergenic | 45.0% | |
CTTGGCTAGCAATCCTATCT+CGG | - | chr7.4:7559986-7560005 | MS.gene24737:CDS | 45.0% | |
GAATCTGACATGGCGATTTC+TGG | + | chr7.4:7560143-7560162 | None:intergenic | 45.0% | |
GATCTTCCTGTTGAAGTGGT+CGG | - | chr7.4:7559597-7559616 | MS.gene24737:CDS | 45.0% | |
GCAAGAAATGGAGAGAAGCT+TGG | - | chr7.4:7559676-7559695 | MS.gene24737:CDS | 45.0% | |
GCTTAGCAGCTCTTCTTTGA+AGG | - | chr7.4:7560178-7560197 | MS.gene24737:CDS | 45.0% | |
TGAAGCCTCTGAATCTGACA+TGG | + | chr7.4:7560153-7560172 | None:intergenic | 45.0% | |
TTGGCTAGCAATCCTATCTC+GGG | - | chr7.4:7559987-7560006 | MS.gene24737:CDS | 45.0% | |
! | AGTTTGGGTAGCTGGACTTT+TGG | - | chr7.4:7560673-7560692 | MS.gene24737:CDS | 45.0% |
! | CTTTTCTCAGTTTGGGTAGC+TGG | - | chr7.4:7560665-7560684 | MS.gene24737:CDS | 45.0% |
! | GCAGCGCCTAACAATTTTCA+TGG | - | chr7.4:7559815-7559834 | MS.gene24737:CDS | 45.0% |
!! | TGTTTTTGACGACGAGGATG+AGG | - | chr7.4:7560484-7560503 | MS.gene24737:CDS | 45.0% |
!!! | GAGTGTTGTTTTTGACGACG+AGG | - | chr7.4:7560478-7560497 | MS.gene24737:CDS | 45.0% |
AACGACAGCGACTTCAAGCA+AGG | + | chr7.4:7560038-7560057 | None:intergenic | 50.0% | |
ATCCCATCTTGGGTCTGCTA+GGG | - | chr7.4:7559629-7559648 | MS.gene24737:CDS | 50.0% | |
ATCCCTAGCAGACCCAAGAT+GGG | + | chr7.4:7559634-7559653 | None:intergenic | 50.0% | |
CGAGATAGGATTGCTAGCCA+AGG | + | chr7.4:7559988-7560007 | None:intergenic | 50.0% | |
CTGTTACCCCTGTCATTGCT+TGG | - | chr7.4:7559856-7559875 | MS.gene24737:CDS | 50.0% | |
GGAGGATCTTCCTGTTGAAG+TGG | - | chr7.4:7559593-7559612 | MS.gene24737:CDS | 50.0% | |
TATCCCATCTTGGGTCTGCT+AGG | - | chr7.4:7559628-7559647 | MS.gene24737:CDS | 50.0% | |
! | TGGGTAGCTGGACTTTTGGA+AGG | - | chr7.4:7560677-7560696 | MS.gene24737:CDS | 50.0% |
! | TGTTAGGCGCTGCAATCCTT+TGG | + | chr7.4:7559808-7559827 | None:intergenic | 50.0% |
CATCCCTAGCAGACCCAAGA+TGG | + | chr7.4:7559635-7559654 | None:intergenic | 55.0% | |
TTCGGCTCAACACCCGAGAT+AGG | + | chr7.4:7560002-7560021 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 7559591 | 7560850 | 7559591 | ID=MS.gene24737 |
chr7.4 | mRNA | 7559591 | 7560850 | 7559591 | ID=MS.gene24737.t1;Parent=MS.gene24737 |
chr7.4 | exon | 7559591 | 7560850 | 7559591 | ID=MS.gene24737.t1.exon1;Parent=MS.gene24737.t1 |
chr7.4 | CDS | 7559591 | 7560850 | 7559591 | ID=cds.MS.gene24737.t1;Parent=MS.gene24737.t1 |
Gene Sequence |
Protein sequence |