AlfalfaGEDB | MS.gene057416

M. sativa cultivar XinJiangDaYe / MS.gene057416

KEGG: K08908
GO: -
PFAM: PF00504.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057416.t1	XP_003595341.2	99.6	267	1	0	1	267	1	267	2.50E-156	561.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057416.t1	Q8LCQ4	71.5	267	73	2	1	266	5	269	3.9e-113	409.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057416.t1	G7IIP1	99.6	267	1	0	1	267	1	267	1.8e-156	561.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene057416	0.889332	2.66E-73	-1.69E-46
MS.gene049171	MS.gene057416	0.908072	2.55E-81	-1.69E-46
MS.gene049173	MS.gene057416	0.856252	3.65E-62	-1.69E-46
MS.gene049217	MS.gene057416	0.890849	6.79E-74	-1.69E-46
MS.gene049222	MS.gene057416	0.913686	4.61E-84	-1.69E-46
MS.gene049232	MS.gene057416	0.853727	1.97E-61	-1.69E-46
MS.gene049285	MS.gene057416	0.924184	9.88E-90	-1.69E-46
MS.gene049320	MS.gene057416	0.910247	2.32E-82	-1.69E-46
MS.gene049369	MS.gene057416	0.823756	1.17E-53	-1.69E-46
MS.gene04939	MS.gene057416	0.816082	6.64E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene03545	MS.gene057416	PPI
MS.gene93362	MS.gene057416	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057416.t1	MTR_2g042720	99.625	267	1	0	1	267	1	267	0.0	542
MS.gene057416.t1	MTR_8g023790	67.281	217	71	0	49	265	50	266	6.29e-106	308
MS.gene057416.t1	MTR_3g435460	51.741	201	91	2	65	265	56	250	1.26e-67	210
MS.gene057416.t1	MTR_3g435460	52.128	188	84	2	78	265	8	189	1.27e-62	195
MS.gene057416.t1	MTR_3g101670	41.912	272	143	5	1	266	2	264	4.98e-58	186
MS.gene057416.t1	MTR_5g098785	39.502	281	136	10	5	264	7	274	3.18e-51	169
MS.gene057416.t1	MTR_5g098780	39.789	284	129	11	5	264	7	272	3.65e-51	169
MS.gene057416.t1	MTR_2g008610	39.024	246	100	7	31	237	15	249	1.53e-40	141
MS.gene057416.t1	MTR_6g033320	40.488	205	94	7	65	260	49	234	4.66e-39	136
MS.gene057416.t1	MTR_4g015570	35.000	260	91	7	61	266	53	288	1.40e-38	136

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057416.t1	AT1G19150	74.899	247	60	1	20	266	25	269	3.21e-139	392
MS.gene057416.t1	AT3G61470	68.932	206	64	0	60	265	50	255	1.05e-103	302
MS.gene057416.t1	AT3G47470	46.835	237	106	4	29	265	35	251	2.77e-67	209
MS.gene057416.t1	AT1G45474	44.206	233	121	5	39	266	26	254	2.45e-55	179
MS.gene057416.t1	AT1G45474	44.206	233	121	5	39	266	26	254	2.45e-55	179
MS.gene057416.t1	AT1G61520	43.556	225	100	7	61	264	52	270	1.94e-50	167
MS.gene057416.t1	AT1G61520	43.556	225	100	7	61	264	52	270	1.94e-50	167
MS.gene057416.t1	AT1G61520	42.788	208	92	7	78	264	14	215	5.62e-43	146
MS.gene057416.t1	AT3G54890	42.439	205	90	7	65	260	48	233	6.94e-42	144
MS.gene057416.t1	AT1G15820	37.692	260	125	9	1	237	1	246	9.47e-41	141

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Find 75 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGATAATGAAGTGG+AGG	0.608373	2.1:+51150658	None:intergenic
AAACCAGATGTTGGTTACCC+TGG	0.575868	2.1:-51149431	MS.gene057416:CDS
AACCACAATGGCCTATCTGG+AGG	0.659675	2.1:+51150400	None:intergenic
AACTTCTCATGGTACAATGC+AGG	0.549392	2.1:-51149599	MS.gene057416:CDS
AAGACATACCTAATCCAAGA+GGG	0.664832	2.1:+51149972	None:intergenic
AATGGCCTATCTGGAGGAAG+TGG	0.535116	2.1:+51150406	None:intergenic
ACCTTCAACCCAACCCATTA+AGG	0.308036	2.1:+51149526	None:intergenic
AGAACTAATGCATGCAAGAT+GGG	0.516375	2.1:-51149684	MS.gene057416:CDS
AGGACTAAGGAGATTAAGAA+TGG	0.401890	2.1:-51149347	MS.gene057416:CDS
AGGTTCACCTGAGCCTGTAA+TGG	0.492772	2.1:-51149375	MS.gene057416:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGTTCACTTTATGATGTGT+TGG	-	chr2.1:51149390-51149409	MS.gene057416:CDS	30.0%
CATCATTAAATGCATGTGTA+AGG	+	chr2.1:51150177-51150196	None:intergenic	30.0%
CCCTGAAAGGATTAATTTAT+AGG	+	chr2.1:51149579-51149598	None:intergenic	30.0%
GTTATGTCAAAAACTTCTCA+TGG	-	chr2.1:51149708-51149727	MS.gene057416:CDS	30.0%
TAAAAAAAGTTGGACCTGTT+TGG	+	chr2.1:51148686-51148705	None:intergenic	30.0%
TAGGTTAATTAGTTACTTGG+TGG	+	chr2.1:51149560-51149579	None:intergenic	30.0%
TGAGCCATCAAATTATCAAT+AGG	+	chr2.1:51150058-51150077	None:intergenic	30.0%
AAATCAAACCCTGAACCAAA+TGG	-	chr2.1:51149113-51149132	MS.gene057416:intron	35.0%
AAGACATACCTAATCCAAGA+GGG	+	chr2.1:51149349-51149368	None:intergenic	35.0%
AATTACTGGTGACTACTTGT+CGG	-	chr2.1:51149504-51149523	MS.gene057416:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	51148644	51150696	51148644	ID=MS.gene057416
chr2.1	mRNA	51148644	51150696	51148644	ID=MS.gene057416.t1;Parent=MS.gene057416
chr2.1	exon	51150650	51150696	51150650	ID=MS.gene057416.t1.exon1;Parent=MS.gene057416.t1
chr2.1	CDS	51150650	51150696	51150650	ID=cds.MS.gene057416.t1;Parent=MS.gene057416.t1
chr2.1	exon	51150364	51150549	51150364	ID=MS.gene057416.t1.exon2;Parent=MS.gene057416.t1
chr2.1	CDS	51150364	51150549	51150364	ID=cds.MS.gene057416.t1;Parent=MS.gene057416.t1
chr2.1	exon	51149981	51150018	51149981	ID=MS.gene057416.t1.exon3;Parent=MS.gene057416.t1
chr2.1	CDS	51149981	51150018	51149981	ID=cds.MS.gene057416.t1;Parent=MS.gene057416.t1
chr2.1	exon	51149229	51149743	51149229	ID=MS.gene057416.t1.exon4;Parent=MS.gene057416.t1
chr2.1	CDS	51149229	51149743	51149229	ID=cds.MS.gene057416.t1;Parent=MS.gene057416.t1
chr2.1	exon	51148644	51148661	51148644	ID=MS.gene057416.t1.exon5;Parent=MS.gene057416.t1
chr2.1	CDS	51148644	51148661	51148644	ID=cds.MS.gene057416.t1;Parent=MS.gene057416.t1

Gene Sequence

>MS.gene057416

ATGGCTTTAGCCATTTCCTCCACTTCATTATCAAGTTTTCCAAACAGGTCCAACTTTTTTTATTTCAACCATTTAAATTAACTTCTTAATATTATTATGCTCATTGATTAATTCTTAAACTATATAGCTTTTTGCATTTTGATGCAGAGAAATATGTCAAAAAGTTTTACACCAAGGAACAACATCAACAACCTCATGGTTAAGCAGCAGCAGAAGAAGAACACTTACAATTAGAAATGCAAAAAAAGGAGTGTCAGATGTTTGTGAACCACTTCCTCCAGATAGGCCATTGTGGTTCCCTGGTAGTTCACCTCCTGAATGGCTTGATGGCAGGTAAATTTTTGTTAATTTTCTTAATGGAAAATTTGGAGCAGTTAGATATAATTTTTGTTTTTTAAAAAAAAAAAAATTTATTTTTACTTTCGTTTTATTTGGTAAACCAAAAGTATCCTCGGCACGCACTAACTAGAAATCAAACCCTGAACCAAATGGTAAAGAGTAAATATGGACCACTTGTGTCCCACTATGATGTTCTTTTTTTTTACTTTAATTTAAAAAAATATTTTTTTATTTATTTCCATTTTATTTTATATTTTGGAAGAAAAAAAAAATGCCAAATCCTTATCATCATTAAACAACTTCAGCAGCATAATCTTTTGATCTTCTTCCCAATTGCAGCCTTCCTGGTGATTTTGGTTTTGACCCTCTTGGATTAGGTATGTCTTACTTTCAATATGAATAACAAAATGTTCACTTTATGATGTGTTGGTCTATTTAGCTTGATACTTCATATTGAAGACGTGTCTGGTGTCTGATACATATCGATGTCGTACACGACACTGTAACATTTGATCACATCTAATTACTGGTGACTACTTGTCGGTACCACGGTCGTGCCGTGTCTATTGATTCACCACCAAGTAACTAATTAACCTATAAATTAATCCTTTCAGGGTCAGATCCAGAGTTGCTAAAATGGTTAGCACAAGCAGAACTAATGCATGCAAGATGGGCAATGTTAGGAGTATCAGGAATTTTAATTCCAGAAATACTTGAAAAAATTGGTTATGTCAAAAACTTCTCATGGTACAATGCAGGTTCAGTAGAATATTTTGCAGACCCAACAACACTTTTCATTGTTCAACTAGCCTTAATGGGTTGGGTTGAAGGTCGAAGATGGGCTGATATCGTTAACCCGGGTAGTGTTGATATTGAGCCTAAGTTACCAAATAGGCCAAACCCAAAACCAGATGTTGGTTACCCTGGTGGGCTATGGTTTGATCCTATGCAGTGGGGAAGAGGTTCACCTGAGCCTGTAATGGTTTTGAGGACTAAGGAGATTAAGAATGGGAGACTTGCTATGCTTGCTTTTCTAGGGTTTTGTTTTCAAGCTGTTTATGTTGGGGGTAGTCCTATTGATAATTTGATGGCTCATCTTGCTGATCCGGGTCATGTCAACATTTTCTCGGTAATTAATAATCTTTTGTTACTTACTTCATTTCTACTATATACGTCGTTAGTGTAAAATAGCCTTACACATGCATTTAATGATGTTTTTAACTCATTATATGACGTGGTAACACATCATTGGATGCATGTGTAATTTTTTACACCAACTAAACTCCAATATATAACAGAGGTGATCCATGTACTCATGCGTCATGCCTTACTGTTTTGAGCGGAGAGATGCGCTGAATTGAGATTGTGTATGTCTCTCTAGTATATTTTTCTAAGTTTTTTGAGCAAAATAATCTAGGTTTTAAAGTGTGTGAAAAATAGATATGTAAATGTTGATATTGTTGTGACTGCAACTAATCCATTTCCAATAGAAGCTACATGAATTTTTAAGCGTTAGGTTAGGGTGAGTGTTACATGTACAAGTCTAACTATTATATATTGATTGCTACAAAATAAAACAATATGCACACTAAATAGGAGATAGTCTCACACAACGCGATAAATCAATGTTTTGATCCCGGCTGAGAGGTGTTAGAAGTAATGAGAATGATTGTGACAGAAGTTTTTGCTTGTGCAGGCTTTCACTTCAGGGTAG

Protein sequence

>MS.gene057416.t1

MALAISSTSLSSFPNREICQKVLHQGTTSTTSWLSSSRRRTLTIRNAKKGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILIPEILEKIGYVKNFSWYNAGSVEYFADPTTLFIVQLALMGWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADPGHVNIFSAFTSG