AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057416


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057416.t1 MTR_2g042720 99.625 267 1 0 1 267 1 267 0.0 542
MS.gene057416.t1 MTR_8g023790 67.281 217 71 0 49 265 50 266 6.29e-106 308
MS.gene057416.t1 MTR_3g435460 51.741 201 91 2 65 265 56 250 1.26e-67 210
MS.gene057416.t1 MTR_3g435460 52.128 188 84 2 78 265 8 189 1.27e-62 195
MS.gene057416.t1 MTR_3g101670 41.912 272 143 5 1 266 2 264 4.98e-58 186
MS.gene057416.t1 MTR_5g098785 39.502 281 136 10 5 264 7 274 3.18e-51 169
MS.gene057416.t1 MTR_5g098780 39.789 284 129 11 5 264 7 272 3.65e-51 169
MS.gene057416.t1 MTR_2g008610 39.024 246 100 7 31 237 15 249 1.53e-40 141
MS.gene057416.t1 MTR_6g033320 40.488 205 94 7 65 260 49 234 4.66e-39 136
MS.gene057416.t1 MTR_4g015570 35.000 260 91 7 61 266 53 288 1.40e-38 136
MS.gene057416.t1 MTR_6g011880 36.032 247 122 9 39 266 31 260 1.52e-33 123
MS.gene057416.t1 MTR_6g011870 36.032 247 122 9 39 266 31 260 1.69e-33 122
MS.gene057416.t1 MTR_4g094605 33.099 284 144 10 2 266 5 261 2.64e-33 122
MS.gene057416.t1 MTR_6g011890 36.032 247 122 9 39 266 31 260 3.32e-33 122
MS.gene057416.t1 MTR_6g060175 35.135 222 113 7 60 265 74 280 5.62e-33 122
MS.gene057416.t1 MTR_1g026550 36.916 214 107 5 72 266 125 329 5.83e-33 123
MS.gene057416.t1 MTR_5g097280 33.210 271 141 10 3 255 1 249 2.29e-32 120
MS.gene057416.t1 MTR_6g012080 34.818 247 125 9 39 266 31 260 7.64e-32 118
MS.gene057416.t1 MTR_6g012110 36.283 226 108 9 60 266 52 260 1.63e-31 117
MS.gene057416.t1 MTR_2g081090 35.909 220 97 7 60 255 22 221 1.62e-30 114
MS.gene057416.t1 MTR_2g081090 35.909 220 97 7 60 255 49 248 2.36e-30 114
MS.gene057416.t1 MTR_6g060175 33.333 222 107 8 60 265 74 270 1.49e-27 107
MS.gene057416.t1 MTR_6g043600 35.242 227 119 8 45 266 21 224 4.74e-25 99.8
MS.gene057416.t1 MTR_3g070340 31.381 239 86 7 61 245 56 270 5.20e-24 98.2
MS.gene057416.t1 MTR_2g436960 45.679 81 38 2 187 267 27 101 3.46e-15 70.1
MS.gene057416.t1 MTR_5g098770 44.444 72 39 1 193 264 21 91 2.02e-13 65.1
MS.gene057416.t1 MTR_0003s0060 43.210 81 40 2 187 267 20 94 1.25e-12 62.8
MS.gene057416.t1 MTR_1g026550 52.632 57 27 0 72 128 125 181 6.26e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057416.t1 AT1G19150 74.899 247 60 1 20 266 25 269 3.21e-139 392
MS.gene057416.t1 AT3G61470 68.932 206 64 0 60 265 50 255 1.05e-103 302
MS.gene057416.t1 AT3G47470 46.835 237 106 4 29 265 35 251 2.77e-67 209
MS.gene057416.t1 AT1G45474 44.206 233 121 5 39 266 26 254 2.45e-55 179
MS.gene057416.t1 AT1G45474 44.206 233 121 5 39 266 26 254 2.45e-55 179
MS.gene057416.t1 AT1G61520 43.556 225 100 7 61 264 52 270 1.94e-50 167
MS.gene057416.t1 AT1G61520 43.556 225 100 7 61 264 52 270 1.94e-50 167
MS.gene057416.t1 AT1G61520 42.788 208 92 7 78 264 14 215 5.62e-43 146
MS.gene057416.t1 AT3G54890 42.439 205 90 7 65 260 48 233 6.94e-42 144
MS.gene057416.t1 AT1G15820 37.692 260 125 9 1 237 1 246 9.47e-41 141
MS.gene057416.t1 AT5G28450 63.366 101 37 0 165 265 71 171 7.63e-40 136
MS.gene057416.t1 AT5G01530 33.846 260 94 7 61 266 54 289 3.61e-36 130
MS.gene057416.t1 AT3G08940 32.095 296 119 9 28 266 16 286 1.16e-35 129
MS.gene057416.t1 AT2G05100 37.333 225 107 8 60 266 52 260 1.92e-34 125
MS.gene057416.t1 AT2G05070 37.333 225 107 8 60 266 52 260 2.25e-34 125
MS.gene057416.t1 AT3G27690 36.916 214 101 8 60 255 53 250 3.04e-33 122
MS.gene057416.t1 AT4G10340 38.356 219 104 8 60 262 65 268 3.04e-33 122
MS.gene057416.t1 AT3G27690 36.916 214 101 8 60 255 85 282 3.53e-33 122
MS.gene057416.t1 AT1G76570 33.103 290 148 11 4 266 57 327 3.62e-33 123
MS.gene057416.t1 AT2G34430 36.792 212 103 6 71 266 65 261 6.85e-33 121
MS.gene057416.t1 AT2G34420 36.792 212 103 6 71 266 64 260 7.85e-33 121
MS.gene057416.t1 AT1G29930 37.327 217 104 7 66 266 62 262 1.10e-32 120
MS.gene057416.t1 AT1G29920 37.327 217 104 7 66 266 62 262 1.23e-32 120
MS.gene057416.t1 AT1G29910 37.327 217 104 7 66 266 62 262 1.23e-32 120
MS.gene057416.t1 AT5G54270 36.816 201 95 6 72 255 64 249 5.50e-30 113
MS.gene057416.t1 AT2G40100 32.645 242 84 8 61 248 55 271 1.18e-27 107
MS.gene057416.t1 AT3G54890 36.757 185 89 7 65 240 48 213 3.48e-27 105
MS.gene057416.t1 AT2G05100 36.041 197 92 8 60 238 52 232 4.35e-26 104
MS.gene057416.t1 AT3G54890 34.804 204 73 7 65 260 48 199 1.08e-22 93.2
MS.gene057416.t1 AT3G54890 45.455 110 51 2 65 165 48 157 1.63e-20 86.3
MS.gene057416.t1 AT2G40100 34.400 125 33 2 61 142 55 173 5.55e-14 68.9
MS.gene057416.t1 AT3G08940 27.650 217 93 5 26 184 15 225 3.58e-13 67.4

Find 75 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAGCCTTCCTGGTGATTT+TGG 0.118612 2.1:-51150001 MS.gene057416:intron
CATTGTTCAACTAGCCTTAA+TGG 0.165083 2.1:-51149540 MS.gene057416:CDS
CTTCCCAATTGCAGCCTTCC+TGG 0.199772 2.1:-51150010 MS.gene057416:intron
CTTGTGCAGGCTTTCACTTC+AGG 0.220137 2.1:-51148648 MS.gene057416:intron
CAGATCCAGAGTTGCTAAAA+TGG 0.292408 2.1:-51149718 MS.gene057416:CDS
TACCTGCCATCAAGCCATTC+AGG 0.297044 2.1:+51150361 None:intergenic
ACCTTCAACCCAACCCATTA+AGG 0.308036 2.1:+51149526 None:intergenic
GGGAACCACAATGGCCTATC+TGG 0.315426 2.1:+51150397 None:intergenic
TTAGTCCTCAAAACCATTAC+AGG 0.332116 2.1:+51149362 None:intergenic
GGGTAACCAACATCTGGTTT+TGG 0.345083 2.1:+51149434 None:intergenic
GCCTTAATGGGTTGGGTTGA+AGG 0.347691 2.1:-51149527 MS.gene057416:CDS
ATTGTTCAACTAGCCTTAAT+GGG 0.360647 2.1:-51149539 MS.gene057416:CDS
GATGGCTCATCTTGCTGATC+CGG 0.383167 2.1:-51149249 MS.gene057416:CDS
TTGAGCCTAAGTTACCAAAT+AGG 0.386800 2.1:-51149463 MS.gene057416:CDS
TGGGCAATGTTAGGAGTATC+AGG 0.387629 2.1:-51149665 MS.gene057416:CDS
TCAACTAGCCTTAATGGGTT+GGG 0.388339 2.1:-51149534 MS.gene057416:CDS
AGGACTAAGGAGATTAAGAA+TGG 0.401890 2.1:-51149347 MS.gene057416:CDS
CATGCAAGATGGGCAATGTT+AGG 0.401951 2.1:-51149674 MS.gene057416:CDS
TTGTGCAGGCTTTCACTTCA+GGG 0.409776 2.1:-51148647 MS.gene057416:intron
TTTGGCCTATTTGGTAACTT+AGG 0.409786 2.1:+51149458 None:intergenic
CTGGTAGTTCACCTCCTGAA+TGG 0.410603 2.1:-51150375 MS.gene057416:CDS
TCACCTCCTGAATGGCTTGA+TGG 0.411611 2.1:-51150367 MS.gene057416:CDS
TAGTCCTATTGATAATTTGA+TGG 0.421103 2.1:-51149267 MS.gene057416:CDS
TGATAATGAAGTGGAGGAAA+TGG 0.422619 2.1:+51150664 None:intergenic
TGAGCCATCAAATTATCAAT+AGG 0.426138 2.1:+51149263 None:intergenic
TTGGTTACCCTGGTGGGCTA+TGG 0.449489 2.1:-51149421 MS.gene057416:CDS
CTCAAAACCATTACAGGCTC+AGG 0.461055 2.1:+51149368 None:intergenic
TTCAACTAGCCTTAATGGGT+TGG 0.465567 2.1:-51149535 MS.gene057416:CDS
ATGGCTCATCTTGCTGATCC+GGG 0.473722 2.1:-51149248 MS.gene057416:CDS
GTTGGGTTGAAGGTCGAAGA+TGG 0.481490 2.1:-51149517 MS.gene057416:CDS
CATTCAGGAGGTGAACTACC+AGG 0.483786 2.1:+51150376 None:intergenic
CTCCTGAATGGCTTGATGGC+AGG 0.485385 2.1:-51150363 MS.gene057416:intron
TGAACAATGAAAAGTGTTGT+TGG 0.488497 2.1:+51149554 None:intergenic
GGATCAAACCATAGCCCACC+AGG 0.490806 2.1:+51149413 None:intergenic
GATCCTATGCAGTGGGGAAG+AGG 0.491222 2.1:-51149395 MS.gene057416:CDS
AGGTTCACCTGAGCCTGTAA+TGG 0.492772 2.1:-51149375 MS.gene057416:CDS
GATAGGCCATTGTGGTTCCC+TGG 0.495533 2.1:-51150394 MS.gene057416:CDS
AGGTTGTTGATGTTGTTCCT+TGG 0.502633 2.1:+51150503 None:intergenic
GTGAACCACTTCCTCCAGAT+AGG 0.506478 2.1:-51150411 MS.gene057416:CDS
GAACAATGAAAAGTGTTGTT+GGG 0.509421 2.1:+51149555 None:intergenic
CCACCAGGGTAACCAACATC+TGG 0.511783 2.1:+51149428 None:intergenic
AGAACTAATGCATGCAAGAT+GGG 0.516375 2.1:-51149684 MS.gene057416:CDS
CAGAACTAATGCATGCAAGA+TGG 0.524297 2.1:-51149685 MS.gene057416:CDS
GGACTAAGGAGATTAAGAAT+GGG 0.534450 2.1:-51149346 MS.gene057416:CDS
AATGGCCTATCTGGAGGAAG+TGG 0.535116 2.1:+51150406 None:intergenic
TTGGGTTGAAGGTCGAAGAT+GGG 0.540851 2.1:-51149516 MS.gene057416:CDS
GGCTCAATATCAACACTACC+CGG 0.541273 2.1:+51149479 None:intergenic
AACTTCTCATGGTACAATGC+AGG 0.549392 2.1:-51149599 MS.gene057416:CDS
ATGGTTTGATCCTATGCAGT+GGG 0.554668 2.1:-51149402 MS.gene057416:CDS
TTTCAAGCTGTTTATGTTGG+GGG 0.563088 2.1:-51149290 MS.gene057416:CDS
GAACCTCTTCCCCACTGCAT+AGG 0.570209 2.1:+51149392 None:intergenic
TTCCTCCAGATAGGCCATTG+TGG 0.574027 2.1:-51150402 MS.gene057416:CDS
AAACCAGATGTTGGTTACCC+TGG 0.575868 2.1:-51149431 MS.gene057416:CDS
ATGGGCTGATATCGTTAACC+CGG 0.576122 2.1:-51149498 MS.gene057416:CDS
TATGGTTTGATCCTATGCAG+TGG 0.581606 2.1:-51149403 MS.gene057416:CDS
GAGAAAATGTTGACATGACC+CGG 0.581640 2.1:+51149230 None:intergenic
CAGATGTTGGTTACCCTGGT+GGG 0.584280 2.1:-51149427 MS.gene057416:CDS
TCTGCTGCTGCTTAACCATG+AGG 0.587348 2.1:+51150483 None:intergenic
CCAAACCCAAAACCAGATGT+TGG 0.602151 2.1:-51149440 MS.gene057416:CDS
TGGAAAACTTGATAATGAAG+TGG 0.604478 2.1:+51150655 None:intergenic
AAAACTTGATAATGAAGTGG+AGG 0.608373 2.1:+51150658 None:intergenic
CCAGATGTTGGTTACCCTGG+TGG 0.630637 2.1:-51149428 MS.gene057416:CDS
GGGTCAAAACCAAAATCACC+AGG 0.636273 2.1:+51149992 None:intergenic
GAACAACATCAACAACCTCA+TGG 0.646836 2.1:-51150498 MS.gene057416:CDS
AACCACAATGGCCTATCTGG+AGG 0.659675 2.1:+51150400 None:intergenic
AAGACATACCTAATCCAAGA+GGG 0.664832 2.1:+51149972 None:intergenic
CAAAACCAAAATCACCAGGA+AGG 0.665067 2.1:+51149996 None:intergenic
ATTCAGGAGGTGAACTACCA+GGG 0.668133 2.1:+51150377 None:intergenic
TGGGCTGATATCGTTAACCC+GGG 0.675104 2.1:-51149497 MS.gene057416:CDS
GAACTACCAGGGAACCACAA+TGG 0.679112 2.1:+51150388 None:intergenic
GCTCAATATCAACACTACCC+GGG 0.692368 2.1:+51149480 None:intergenic
CTGCCATCAAGCCATTCAGG+AGG 0.705497 2.1:+51150364 None:intergenic
GATCAAACCATAGCCCACCA+GGG 0.714446 2.1:+51149414 None:intergenic
TAAGACATACCTAATCCAAG+AGG 0.724614 2.1:+51149971 None:intergenic
TGGTTTGATCCTATGCAGTG+GGG 0.749765 2.1:-51149401 MS.gene057416:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAGAAGTTAATTTAAA+TGG + chr2.1:51148715-51148734 None:intergenic 10.0%
!! TTCCAAAATATAAAATAAAA+TGG + chr2.1:51149224-51149243 None:intergenic 10.0%
!!! ATTTTTGTTAATTTTCTTAA+TGG - chr2.1:51148981-51149000 MS.gene057416:intron 10.0%
!!! TTCCATTTTATTTTATATTT+TGG - chr2.1:51149219-51149238 MS.gene057416:intron 10.0%
!!! AATTTTCTTAATGGAAAATT+TGG - chr2.1:51148990-51149009 MS.gene057416:intron 15.0%
!!! ATTTTTACTTTCGTTTTATT+TGG - chr2.1:51149056-51149075 MS.gene057416:intron 15.0%
!! AAAAAAAAAGAACATCATAG+TGG + chr2.1:51149167-51149186 None:intergenic 20.0%
!! AAAAAAAAGAACATCATAGT+GGG + chr2.1:51149166-51149185 None:intergenic 20.0%
!! ACAATTAGAAATGCAAAAAA+AGG - chr2.1:51148870-51148889 MS.gene057416:intron 20.0%
!! ATGGTTGAAATAAAAAAAGT+TGG + chr2.1:51148696-51148715 None:intergenic 20.0%
!! TTATAGGTTAATTAGTTACT+TGG + chr2.1:51149563-51149582 None:intergenic 20.0%
!!! TTTTTTGAGCAAAATAATCT+AGG - chr2.1:51150378-51150397 MS.gene057416:CDS 20.0%
! AAAATTCATGTAGCTTCTAT+TGG + chr2.1:51150469-51150488 None:intergenic 25.0%
! AAACAATATGCACACTAAAT+AGG - chr2.1:51150557-51150576 MS.gene057416:intron 25.0%
! ACCTATAAATTAATCCTTTC+AGG - chr2.1:51149575-51149594 MS.gene057416:CDS 25.0%
! ATTTGATCACATCTAATTAC+TGG - chr2.1:51149490-51149509 MS.gene057416:CDS 25.0%
! CAAATGGTAAAGAGTAAATA+TGG - chr2.1:51149129-51149148 MS.gene057416:intron 25.0%
! CATATTTACTCTTTACCATT+TGG + chr2.1:51149131-51149150 None:intergenic 25.0%
! CCAGAAATACTTGAAAAAAT+TGG - chr2.1:51149686-51149705 MS.gene057416:CDS 25.0%
! CCTATAAATTAATCCTTTCA+GGG - chr2.1:51149576-51149595 MS.gene057416:CDS 25.0%
! GAAGTTGTTTAATGATGATA+AGG + chr2.1:51149266-51149285 None:intergenic 25.0%
! GTTATATATTGGAGTTTAGT+TGG + chr2.1:51150259-51150278 None:intergenic 25.0%
! GTTTAATGATGATAAGGATT+TGG + chr2.1:51149260-51149279 None:intergenic 25.0%
! TAAACTCCAATATATAACAG+AGG - chr2.1:51150261-51150280 MS.gene057416:intron 25.0%
!! TAGTCCTATTGATAATTTGA+TGG - chr2.1:51150051-51150070 MS.gene057416:intron 25.0%
!!! AATTTTTAAGCGTTAGGTTA+GGG - chr2.1:51150483-51150502 MS.gene057416:CDS 25.0%
!!! ATAAATCAATGTTTTGATCC+CGG - chr2.1:51150600-51150619 MS.gene057416:intron 25.0%
!!! CCAATTTTTTCAAGTATTTC+TGG + chr2.1:51149689-51149708 None:intergenic 25.0%
!!! TACATGAATTTTTAAGCGTT+AGG - chr2.1:51150477-51150496 MS.gene057416:CDS 25.0%
!!! TTTTAACTCATTATATGACG+TGG - chr2.1:51150198-51150217 MS.gene057416:intron 25.0%
ATGTTCACTTTATGATGTGT+TGG - chr2.1:51149390-51149409 MS.gene057416:CDS 30.0%
CATCATTAAATGCATGTGTA+AGG + chr2.1:51150177-51150196 None:intergenic 30.0%
CCCTGAAAGGATTAATTTAT+AGG + chr2.1:51149579-51149598 None:intergenic 30.0%
GTTATGTCAAAAACTTCTCA+TGG - chr2.1:51149708-51149727 MS.gene057416:CDS 30.0%
TAAAAAAAGTTGGACCTGTT+TGG + chr2.1:51148686-51148705 None:intergenic 30.0%
TAGGTTAATTAGTTACTTGG+TGG + chr2.1:51149560-51149579 None:intergenic 30.0%
TGAGCCATCAAATTATCAAT+AGG + chr2.1:51150058-51150077 None:intergenic 30.0%
! CATTATCAAGTTTTCCAAAC+AGG - chr2.1:51148669-51148688 MS.gene057416:intron 30.0%
! TGTCAAAAAGTTTTACACCA+AGG - chr2.1:51148798-51148817 MS.gene057416:intron 30.0%
!! AAAACTTGATAATGAAGTGG+AGG + chr2.1:51148663-51148682 None:intergenic 30.0%
!! ATTGTTCAACTAGCCTTAAT+GGG - chr2.1:51149779-51149798 MS.gene057416:intron 30.0%
!! GAACAATGAAAAGTGTTGTT+GGG + chr2.1:51149766-51149785 None:intergenic 30.0%
!! GAATTTTTAAGCGTTAGGTT+AGG - chr2.1:51150482-51150501 MS.gene057416:CDS 30.0%
!! GTTTTCAAGCTGTTTATGTT+GGG - chr2.1:51150026-51150045 MS.gene057416:intron 30.0%
!! TGAACAATGAAAAGTGTTGT+TGG + chr2.1:51149767-51149786 None:intergenic 30.0%
!! TGGAAAACTTGATAATGAAG+TGG + chr2.1:51148666-51148685 None:intergenic 30.0%
!! TGTTTTCAAGCTGTTTATGT+TGG - chr2.1:51150025-51150044 MS.gene057416:intron 30.0%
!! TTTTCAAGCTGTTTATGTTG+GGG - chr2.1:51150027-51150046 MS.gene057416:intron 30.0%
AAATCAAACCCTGAACCAAA+TGG - chr2.1:51149113-51149132 MS.gene057416:intron 35.0%
AAGACATACCTAATCCAAGA+GGG + chr2.1:51149349-51149368 None:intergenic 35.0%
AATTACTGGTGACTACTTGT+CGG - chr2.1:51149504-51149523 MS.gene057416:CDS 35.0%
AGAACTAATGCATGCAAGAT+GGG - chr2.1:51149634-51149653 MS.gene057416:CDS 35.0%
AGGACTAAGGAGATTAAGAA+TGG - chr2.1:51149971-51149990 MS.gene057416:intron 35.0%
CATGTAGCTTCTATTGGAAA+TGG + chr2.1:51150463-51150482 None:intergenic 35.0%
GGACTAAGGAGATTAAGAAT+GGG - chr2.1:51149972-51149991 MS.gene057416:intron 35.0%
GGATCACCTCTGTTATATAT+TGG + chr2.1:51150270-51150289 None:intergenic 35.0%
TAAGACATACCTAATCCAAG+AGG + chr2.1:51149350-51149369 None:intergenic 35.0%
TTAGTCCTCAAAACCATTAC+AGG + chr2.1:51149959-51149978 None:intergenic 35.0%
TTGAGCCTAAGTTACCAAAT+AGG - chr2.1:51149855-51149874 MS.gene057416:intron 35.0%
TTTCAAGCTGTTTATGTTGG+GGG - chr2.1:51150028-51150047 MS.gene057416:intron 35.0%
! ACTCTTTACCATTTGGTTCA+GGG + chr2.1:51149124-51149143 None:intergenic 35.0%
! TACTCTTTACCATTTGGTTC+AGG + chr2.1:51149125-51149144 None:intergenic 35.0%
! TGATAATGAAGTGGAGGAAA+TGG + chr2.1:51148657-51148676 None:intergenic 35.0%
! TTTGGCCTATTTGGTAACTT+AGG + chr2.1:51149863-51149882 None:intergenic 35.0%
!! CATTGTTCAACTAGCCTTAA+TGG - chr2.1:51149778-51149797 MS.gene057416:intron 35.0%
!! TGGTAAACCAAAAGTATCCT+CGG - chr2.1:51149076-51149095 MS.gene057416:intron 35.0%
!! TTGCTATGCTTGCTTTTCTA+GGG - chr2.1:51149999-51150018 MS.gene057416:CDS 35.0%
!!! TGTAATGGTTTTGAGGACTA+AGG - chr2.1:51149958-51149977 MS.gene057416:intron 35.0%
AACTTCTCATGGTACAATGC+AGG - chr2.1:51149719-51149738 MS.gene057416:CDS 40.0%
AGGTTGTTGATGTTGTTCCT+TGG + chr2.1:51148818-51148837 None:intergenic 40.0%
ATGACGTGGTAACACATCAT+TGG - chr2.1:51150212-51150231 MS.gene057416:intron 40.0%
ATGGTTTGATCCTATGCAGT+GGG - chr2.1:51149916-51149935 MS.gene057416:intron 40.0%
CAAAACCAAAATCACCAGGA+AGG + chr2.1:51149325-51149344 None:intergenic 40.0%
CAGAACTAATGCATGCAAGA+TGG - chr2.1:51149633-51149652 MS.gene057416:CDS 40.0%
CAGATCCAGAGTTGCTAAAA+TGG - chr2.1:51149600-51149619 MS.gene057416:CDS 40.0%
CTTCATATTGAAGACGTGTC+TGG - chr2.1:51149429-51149448 MS.gene057416:CDS 40.0%
GAACAACATCAACAACCTCA+TGG - chr2.1:51148820-51148839 MS.gene057416:intron 40.0%
GAGAAAATGTTGACATGACC+CGG + chr2.1:51150091-51150110 None:intergenic 40.0%
TATGGTTTGATCCTATGCAG+TGG - chr2.1:51149915-51149934 MS.gene057416:intron 40.0%
! ACAGAAGTTTTTGCTTGTGC+AGG - chr2.1:51150657-51150676 MS.gene057416:CDS 40.0%
! GGGTCATGTCAACATTTTCT+CGG - chr2.1:51150090-51150109 MS.gene057416:intron 40.0%
! TGGTGGTGAATCAATAGACA+CGG + chr2.1:51149543-51149562 None:intergenic 40.0%
!! CTTGCTATGCTTGCTTTTCT+AGG - chr2.1:51149998-51150017 MS.gene057416:CDS 40.0%
!! GCTAACCATTTTAGCAACTC+TGG + chr2.1:51149608-51149627 None:intergenic 40.0%
!! TCAACTAGCCTTAATGGGTT+GGG - chr2.1:51149784-51149803 MS.gene057416:intron 40.0%
!! TCATGCCTTACTGTTTTGAG+CGG - chr2.1:51150303-51150322 MS.gene057416:intron 40.0%
!! TTCAACTAGCCTTAATGGGT+TGG - chr2.1:51149783-51149802 MS.gene057416:intron 40.0%
!!! GATTTTGGTTTTGACCCTCT+TGG - chr2.1:51149332-51149351 MS.gene057416:CDS 40.0%
!!! GGTAACCAACATCTGGTTTT+GGG + chr2.1:51149886-51149905 None:intergenic 40.0%
ACCTTCAACCCAACCCATTA+AGG + chr2.1:51149795-51149814 None:intergenic 45.0%
ATTCAGGAGGTGAACTACCA+GGG + chr2.1:51148944-51148963 None:intergenic 45.0%
CATGCAAGATGGGCAATGTT+AGG - chr2.1:51149644-51149663 MS.gene057416:CDS 45.0%
CCAAACCCAAAACCAGATGT+TGG - chr2.1:51149878-51149897 MS.gene057416:intron 45.0%
CTCAAAACCATTACAGGCTC+AGG + chr2.1:51149953-51149972 None:intergenic 45.0%
GCTCAATATCAACACTACCC+GGG + chr2.1:51149841-51149860 None:intergenic 45.0%
GGCTCAATATCAACACTACC+CGG + chr2.1:51149842-51149861 None:intergenic 45.0%
GGGTCAAAACCAAAATCACC+AGG + chr2.1:51149329-51149348 None:intergenic 45.0%
TACTTCTAACACCTCTCAGC+CGG + chr2.1:51150622-51150641 None:intergenic 45.0%
TCTCTCCGCTCAAAACAGTA+AGG + chr2.1:51150311-51150330 None:intergenic 45.0%
TGGTTTGATCCTATGCAGTG+GGG - chr2.1:51149917-51149936 MS.gene057416:intron 45.0%
TTGTGCAGGCTTTCACTTCA+GGG - chr2.1:51150671-51150690 MS.gene057416:CDS 45.0%
! AAACCAGATGTTGGTTACCC+TGG - chr2.1:51149887-51149906 MS.gene057416:intron 45.0%
! ACATCATAGTGGGACACAAG+TGG + chr2.1:51149156-51149175 None:intergenic 45.0%
! ATGGGCTGATATCGTTAACC+CGG - chr2.1:51149820-51149839 MS.gene057416:intron 45.0%
!! CTGAGCCTGTAATGGTTTTG+AGG - chr2.1:51149951-51149970 MS.gene057416:intron 45.0%
!! GGGTAACCAACATCTGGTTT+TGG + chr2.1:51149887-51149906 None:intergenic 45.0%
!! GGTTTTGACCCTCTTGGATT+AGG - chr2.1:51149338-51149357 MS.gene057416:CDS 45.0%
!! TGGGCAATGTTAGGAGTATC+AGG - chr2.1:51149653-51149672 MS.gene057416:CDS 45.0%
!! TTGGGTTGAAGGTCGAAGAT+GGG - chr2.1:51149802-51149821 MS.gene057416:intron 45.0%
!!! CCAACATCTGGTTTTGGGTT+TGG + chr2.1:51149881-51149900 None:intergenic 45.0%
!!! GGTTTTGGGTTTGGCCTATT+TGG + chr2.1:51149872-51149891 None:intergenic 45.0%
AACCACAATGGCCTATCTGG+AGG + chr2.1:51148921-51148940 None:intergenic 50.0%
AATGGCCTATCTGGAGGAAG+TGG + chr2.1:51148915-51148934 None:intergenic 50.0%
ACTCTGGATCTGACCCTGAA+AGG + chr2.1:51149592-51149611 None:intergenic 50.0%
ACTTCTAACACCTCTCAGCC+GGG + chr2.1:51150621-51150640 None:intergenic 50.0%
AGGCATGACGCATGAGTACA+TGG + chr2.1:51150291-51150310 None:intergenic 50.0%
AGGTTCACCTGAGCCTGTAA+TGG - chr2.1:51149943-51149962 MS.gene057416:intron 50.0%
ATCACCAGGAAGGCTGCAAT+TGG + chr2.1:51149315-51149334 None:intergenic 50.0%
ATGGCTCATCTTGCTGATCC+GGG - chr2.1:51150070-51150089 MS.gene057416:intron 50.0%
CATTCAGGAGGTGAACTACC+AGG + chr2.1:51148945-51148964 None:intergenic 50.0%
CTGGTAGTTCACCTCCTGAA+TGG - chr2.1:51148943-51148962 MS.gene057416:intron 50.0%
CTTGTGCAGGCTTTCACTTC+AGG - chr2.1:51150670-51150689 MS.gene057416:CDS 50.0%
GAACTACCAGGGAACCACAA+TGG + chr2.1:51148933-51148952 None:intergenic 50.0%
GATCAAACCATAGCCCACCA+GGG + chr2.1:51149907-51149926 None:intergenic 50.0%
GATGGCTCATCTTGCTGATC+CGG - chr2.1:51150069-51150088 MS.gene057416:intron 50.0%
GTGAACCACTTCCTCCAGAT+AGG - chr2.1:51148907-51148926 MS.gene057416:intron 50.0%
GTGACTACTTGTCGGTACCA+CGG - chr2.1:51149512-51149531 MS.gene057416:CDS 50.0%
TACCTGCCATCAAGCCATTC+AGG + chr2.1:51148960-51148979 None:intergenic 50.0%
TCACCAGGAAGGCTGCAATT+GGG + chr2.1:51149314-51149333 None:intergenic 50.0%
TCACCTCCTGAATGGCTTGA+TGG - chr2.1:51148951-51148970 MS.gene057416:intron 50.0%
TGGGCTGATATCGTTAACCC+GGG - chr2.1:51149821-51149840 MS.gene057416:intron 50.0%
TTCCTCCAGATAGGCCATTG+TGG - chr2.1:51148916-51148935 MS.gene057416:intron 50.0%
! CAGATGTTGGTTACCCTGGT+GGG - chr2.1:51149891-51149910 MS.gene057416:intron 50.0%
! TCTGCTGCTGCTTAACCATG+AGG + chr2.1:51148838-51148857 None:intergenic 50.0%
! TGCAGCCTTCCTGGTGATTT+TGG - chr2.1:51149317-51149336 MS.gene057416:CDS 50.0%
!! GCCTTAATGGGTTGGGTTGA+AGG - chr2.1:51149791-51149810 MS.gene057416:intron 50.0%
!! GTTGGGTTGAAGGTCGAAGA+TGG - chr2.1:51149801-51149820 MS.gene057416:intron 50.0%
!! TTTCTAGTTAGTGCGTGCCG+AGG + chr2.1:51149096-51149115 None:intergenic 50.0%
!!! ATGTTTTGATCCCGGCTGAG+AGG - chr2.1:51150608-51150627 MS.gene057416:intron 50.0%
CCACCAGGGTAACCAACATC+TGG + chr2.1:51149893-51149912 None:intergenic 55.0%
CTGCCATCAAGCCATTCAGG+AGG + chr2.1:51148957-51148976 None:intergenic 55.0%
CTTCCCAATTGCAGCCTTCC+TGG - chr2.1:51149308-51149327 MS.gene057416:CDS 55.0%
GAACCTCTTCCCCACTGCAT+AGG + chr2.1:51149929-51149948 None:intergenic 55.0%
GATAGGCCATTGTGGTTCCC+TGG - chr2.1:51148924-51148943 MS.gene057416:intron 55.0%
GATCCTATGCAGTGGGGAAG+AGG - chr2.1:51149923-51149942 MS.gene057416:intron 55.0%
GGATCAAACCATAGCCCACC+AGG + chr2.1:51149908-51149927 None:intergenic 55.0%
GGGAACCACAATGGCCTATC+TGG + chr2.1:51148924-51148943 None:intergenic 55.0%
! CCAGATGTTGGTTACCCTGG+TGG - chr2.1:51149890-51149909 MS.gene057416:intron 55.0%
! CTCCTGAATGGCTTGATGGC+AGG - chr2.1:51148955-51148974 MS.gene057416:intron 55.0%
! GTGCGTGCCGAGGATACTTT+TGG + chr2.1:51149086-51149105 None:intergenic 55.0%
!! TTGGTTACCCTGGTGGGCTA+TGG - chr2.1:51149897-51149916 MS.gene057416:intron 55.0%
CAATAGACACGGCACGACCG+TGG + chr2.1:51149532-51149551 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 51148644 51150696 51148644 ID=MS.gene057416
chr2.1 mRNA 51148644 51150696 51148644 ID=MS.gene057416.t1;Parent=MS.gene057416
chr2.1 exon 51150650 51150696 51150650 ID=MS.gene057416.t1.exon1;Parent=MS.gene057416.t1
chr2.1 CDS 51150650 51150696 51150650 ID=cds.MS.gene057416.t1;Parent=MS.gene057416.t1
chr2.1 exon 51150364 51150549 51150364 ID=MS.gene057416.t1.exon2;Parent=MS.gene057416.t1
chr2.1 CDS 51150364 51150549 51150364 ID=cds.MS.gene057416.t1;Parent=MS.gene057416.t1
chr2.1 exon 51149981 51150018 51149981 ID=MS.gene057416.t1.exon3;Parent=MS.gene057416.t1
chr2.1 CDS 51149981 51150018 51149981 ID=cds.MS.gene057416.t1;Parent=MS.gene057416.t1
chr2.1 exon 51149229 51149743 51149229 ID=MS.gene057416.t1.exon4;Parent=MS.gene057416.t1
chr2.1 CDS 51149229 51149743 51149229 ID=cds.MS.gene057416.t1;Parent=MS.gene057416.t1
chr2.1 exon 51148644 51148661 51148644 ID=MS.gene057416.t1.exon5;Parent=MS.gene057416.t1
chr2.1 CDS 51148644 51148661 51148644 ID=cds.MS.gene057416.t1;Parent=MS.gene057416.t1
Gene Sequence

>MS.gene057416

ATGGCTTTAGCCATTTCCTCCACTTCATTATCAAGTTTTCCAAACAGGTCCAACTTTTTTTATTTCAACCATTTAAATTAACTTCTTAATATTATTATGCTCATTGATTAATTCTTAAACTATATAGCTTTTTGCATTTTGATGCAGAGAAATATGTCAAAAAGTTTTACACCAAGGAACAACATCAACAACCTCATGGTTAAGCAGCAGCAGAAGAAGAACACTTACAATTAGAAATGCAAAAAAAGGAGTGTCAGATGTTTGTGAACCACTTCCTCCAGATAGGCCATTGTGGTTCCCTGGTAGTTCACCTCCTGAATGGCTTGATGGCAGGTAAATTTTTGTTAATTTTCTTAATGGAAAATTTGGAGCAGTTAGATATAATTTTTGTTTTTTAAAAAAAAAAAAATTTATTTTTACTTTCGTTTTATTTGGTAAACCAAAAGTATCCTCGGCACGCACTAACTAGAAATCAAACCCTGAACCAAATGGTAAAGAGTAAATATGGACCACTTGTGTCCCACTATGATGTTCTTTTTTTTTACTTTAATTTAAAAAAATATTTTTTTATTTATTTCCATTTTATTTTATATTTTGGAAGAAAAAAAAAATGCCAAATCCTTATCATCATTAAACAACTTCAGCAGCATAATCTTTTGATCTTCTTCCCAATTGCAGCCTTCCTGGTGATTTTGGTTTTGACCCTCTTGGATTAGGTATGTCTTACTTTCAATATGAATAACAAAATGTTCACTTTATGATGTGTTGGTCTATTTAGCTTGATACTTCATATTGAAGACGTGTCTGGTGTCTGATACATATCGATGTCGTACACGACACTGTAACATTTGATCACATCTAATTACTGGTGACTACTTGTCGGTACCACGGTCGTGCCGTGTCTATTGATTCACCACCAAGTAACTAATTAACCTATAAATTAATCCTTTCAGGGTCAGATCCAGAGTTGCTAAAATGGTTAGCACAAGCAGAACTAATGCATGCAAGATGGGCAATGTTAGGAGTATCAGGAATTTTAATTCCAGAAATACTTGAAAAAATTGGTTATGTCAAAAACTTCTCATGGTACAATGCAGGTTCAGTAGAATATTTTGCAGACCCAACAACACTTTTCATTGTTCAACTAGCCTTAATGGGTTGGGTTGAAGGTCGAAGATGGGCTGATATCGTTAACCCGGGTAGTGTTGATATTGAGCCTAAGTTACCAAATAGGCCAAACCCAAAACCAGATGTTGGTTACCCTGGTGGGCTATGGTTTGATCCTATGCAGTGGGGAAGAGGTTCACCTGAGCCTGTAATGGTTTTGAGGACTAAGGAGATTAAGAATGGGAGACTTGCTATGCTTGCTTTTCTAGGGTTTTGTTTTCAAGCTGTTTATGTTGGGGGTAGTCCTATTGATAATTTGATGGCTCATCTTGCTGATCCGGGTCATGTCAACATTTTCTCGGTAATTAATAATCTTTTGTTACTTACTTCATTTCTACTATATACGTCGTTAGTGTAAAATAGCCTTACACATGCATTTAATGATGTTTTTAACTCATTATATGACGTGGTAACACATCATTGGATGCATGTGTAATTTTTTACACCAACTAAACTCCAATATATAACAGAGGTGATCCATGTACTCATGCGTCATGCCTTACTGTTTTGAGCGGAGAGATGCGCTGAATTGAGATTGTGTATGTCTCTCTAGTATATTTTTCTAAGTTTTTTGAGCAAAATAATCTAGGTTTTAAAGTGTGTGAAAAATAGATATGTAAATGTTGATATTGTTGTGACTGCAACTAATCCATTTCCAATAGAAGCTACATGAATTTTTAAGCGTTAGGTTAGGGTGAGTGTTACATGTACAAGTCTAACTATTATATATTGATTGCTACAAAATAAAACAATATGCACACTAAATAGGAGATAGTCTCACACAACGCGATAAATCAATGTTTTGATCCCGGCTGAGAGGTGTTAGAAGTAATGAGAATGATTGTGACAGAAGTTTTTGCTTGTGCAGGCTTTCACTTCAGGGTAG

Protein sequence

>MS.gene057416.t1

MALAISSTSLSSFPNREICQKVLHQGTTSTTSWLSSSRRRTLTIRNAKKGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILIPEILEKIGYVKNFSWYNAGSVEYFADPTTLFIVQLALMGWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADPGHVNIFSAFTSG