Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25138.t1 | XP_003627275.1 | 95.2 | 207 | 10 | 0 | 1 | 207 | 1 | 207 | 5.60E-103 | 383.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25138.t1 | O04012 | 53.8 | 208 | 94 | 1 | 1 | 206 | 1 | 208 | 5.2e-57 | 222.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25138.t1 | G7L6U7 | 95.2 | 207 | 10 | 0 | 1 | 207 | 1 | 207 | 4.1e-103 | 383.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051996 | MS.gene25138 | 0.832595 | 8.64E-56 | -1.69E-46 |
| MS.gene052223 | MS.gene25138 | 0.839583 | 1.45E-57 | -1.69E-46 |
| MS.gene054138 | MS.gene25138 | 0.800467 | 1.42E-48 | -1.69E-46 |
| MS.gene054277 | MS.gene25138 | 0.81374 | 2.20E-51 | -1.69E-46 |
| MS.gene054742 | MS.gene25138 | 0.844803 | 6.03E-59 | -1.69E-46 |
| MS.gene055240 | MS.gene25138 | 0.803126 | 4.04E-49 | -1.69E-46 |
| MS.gene056330 | MS.gene25138 | 0.823803 | 1.14E-53 | -1.69E-46 |
| MS.gene056680 | MS.gene25138 | 0.811213 | 7.84E-51 | -1.69E-46 |
| MS.gene056920 | MS.gene25138 | 0.839793 | 1.28E-57 | -1.69E-46 |
| MS.gene056922 | MS.gene25138 | 0.808892 | 2.48E-50 | -1.69E-46 |
| MS.gene056923 | MS.gene25138 | 0.805567 | 1.25E-49 | -1.69E-46 |
| MS.gene060087 | MS.gene25138 | 0.813281 | 2.77E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25138.t1 | MTR_8g020610 | 95.169 | 207 | 10 | 0 | 1 | 207 | 1 | 207 | 3.12e-143 | 397 |
| MS.gene25138.t1 | MTR_8g020590 | 58.373 | 209 | 84 | 2 | 1 | 207 | 1 | 208 | 1.07e-80 | 239 |
| MS.gene25138.t1 | MTR_8g020630 | 56.459 | 209 | 87 | 3 | 1 | 207 | 3 | 209 | 2.52e-76 | 228 |
| MS.gene25138.t1 | MTR_8g020670 | 56.796 | 206 | 85 | 3 | 4 | 207 | 6 | 209 | 7.85e-76 | 227 |
| MS.gene25138.t1 | MTR_2g044040 | 54.545 | 209 | 91 | 3 | 1 | 207 | 3 | 209 | 1.07e-72 | 219 |
| MS.gene25138.t1 | MTR_2g041570 | 51.196 | 209 | 98 | 2 | 1 | 207 | 4 | 210 | 1.13e-72 | 219 |
| MS.gene25138.t1 | MTR_8g020650 | 58.031 | 193 | 77 | 3 | 17 | 207 | 19 | 209 | 1.62e-72 | 219 |
| MS.gene25138.t1 | MTR_2g041580 | 51.196 | 209 | 98 | 2 | 1 | 207 | 4 | 210 | 4.58e-72 | 218 |
| MS.gene25138.t1 | MTR_2g041550 | 51.196 | 209 | 98 | 2 | 1 | 207 | 4 | 210 | 1.83e-71 | 216 |
| MS.gene25138.t1 | MTR_2g045100 | 54.369 | 206 | 90 | 3 | 4 | 207 | 6 | 209 | 6.16e-71 | 214 |
| MS.gene25138.t1 | MTR_3g019710 | 54.067 | 209 | 92 | 3 | 1 | 207 | 3 | 209 | 2.39e-69 | 211 |
| MS.gene25138.t1 | MTR_2g036120 | 52.404 | 208 | 95 | 3 | 1 | 206 | 3 | 208 | 1.72e-68 | 208 |
| MS.gene25138.t1 | MTR_8g020770 | 50.725 | 207 | 98 | 3 | 4 | 207 | 7 | 212 | 2.38e-66 | 203 |
| MS.gene25138.t1 | MTR_0284s0010 | 52.632 | 209 | 95 | 3 | 1 | 207 | 3 | 209 | 4.69e-66 | 202 |
| MS.gene25138.t1 | MTR_3g019650 | 52.913 | 206 | 92 | 4 | 4 | 207 | 6 | 208 | 9.64e-66 | 201 |
| MS.gene25138.t1 | MTR_4g010340 | 52.913 | 206 | 90 | 5 | 4 | 207 | 5 | 205 | 4.35e-65 | 199 |
| MS.gene25138.t1 | MTR_5g031460 | 50.718 | 209 | 99 | 3 | 1 | 207 | 3 | 209 | 5.45e-65 | 199 |
| MS.gene25138.t1 | MTR_3g019680 | 52.427 | 206 | 93 | 4 | 4 | 207 | 6 | 208 | 1.33e-64 | 199 |
| MS.gene25138.t1 | MTR_7g011340 | 53.093 | 194 | 87 | 3 | 16 | 207 | 18 | 209 | 3.00e-61 | 190 |
| MS.gene25138.t1 | MTR_2g019780 | 49.048 | 210 | 100 | 5 | 2 | 207 | 6 | 212 | 1.71e-59 | 186 |
| MS.gene25138.t1 | MTR_3g073170 | 51.337 | 187 | 87 | 4 | 22 | 207 | 27 | 210 | 1.80e-59 | 186 |
| MS.gene25138.t1 | MTR_8g020760 | 49.519 | 208 | 101 | 3 | 2 | 207 | 6 | 211 | 5.72e-58 | 182 |
| MS.gene25138.t1 | MTR_8g020750 | 45.894 | 207 | 108 | 3 | 4 | 207 | 7 | 212 | 1.35e-57 | 181 |
| MS.gene25138.t1 | MTR_3g019810 | 46.305 | 203 | 99 | 4 | 1 | 201 | 109 | 303 | 2.82e-52 | 170 |
| MS.gene25138.t1 | MTR_8g020763 | 46.995 | 183 | 94 | 2 | 27 | 207 | 9 | 190 | 1.43e-51 | 165 |
| MS.gene25138.t1 | MTR_1g060120 | 36.979 | 192 | 107 | 5 | 20 | 200 | 30 | 218 | 4.62e-36 | 126 |
| MS.gene25138.t1 | MTR_1g085140 | 37.838 | 185 | 109 | 4 | 22 | 201 | 30 | 213 | 3.31e-34 | 121 |
| MS.gene25138.t1 | MTR_4g027415 | 49.606 | 127 | 60 | 3 | 16 | 140 | 18 | 142 | 1.11e-32 | 115 |
| MS.gene25138.t1 | MTR_1g112200 | 35.263 | 190 | 114 | 4 | 20 | 206 | 27 | 210 | 2.36e-32 | 116 |
| MS.gene25138.t1 | MTR_2g072560 | 52.252 | 111 | 50 | 2 | 4 | 112 | 6 | 115 | 2.38e-32 | 114 |
| MS.gene25138.t1 | MTR_7g111240 | 37.975 | 158 | 96 | 1 | 22 | 177 | 26 | 183 | 1.81e-30 | 111 |
| MS.gene25138.t1 | MTR_6g005360 | 39.474 | 190 | 105 | 6 | 22 | 203 | 28 | 215 | 4.88e-30 | 110 |
| MS.gene25138.t1 | MTR_6g005330 | 39.474 | 190 | 105 | 6 | 22 | 203 | 28 | 215 | 6.65e-30 | 110 |
| MS.gene25138.t1 | MTR_6g005310 | 39.474 | 190 | 105 | 6 | 22 | 203 | 28 | 215 | 8.68e-30 | 110 |
| MS.gene25138.t1 | MTR_7g111240 | 37.975 | 158 | 93 | 2 | 22 | 177 | 26 | 180 | 2.10e-29 | 108 |
| MS.gene25138.t1 | MTR_5g036570 | 33.333 | 189 | 121 | 3 | 22 | 205 | 33 | 221 | 3.20e-29 | 108 |
| MS.gene25138.t1 | MTR_1g079490 | 37.838 | 185 | 104 | 5 | 3 | 177 | 6 | 189 | 3.35e-29 | 108 |
| MS.gene25138.t1 | MTR_6g005340 | 38.947 | 190 | 106 | 6 | 22 | 203 | 28 | 215 | 5.99e-29 | 107 |
| MS.gene25138.t1 | MTR_2g031270 | 35.638 | 188 | 112 | 4 | 22 | 203 | 29 | 213 | 1.86e-28 | 106 |
| MS.gene25138.t1 | MTR_2g030855 | 34.555 | 191 | 116 | 4 | 19 | 203 | 25 | 212 | 5.39e-28 | 105 |
| MS.gene25138.t1 | MTR_1g023770 | 35.468 | 203 | 118 | 5 | 8 | 203 | 13 | 209 | 7.28e-28 | 104 |
| MS.gene25138.t1 | MTR_3g019610 | 50.980 | 102 | 47 | 2 | 4 | 103 | 6 | 106 | 1.10e-27 | 101 |
| MS.gene25138.t1 | MTR_1g085500 | 32.240 | 183 | 120 | 2 | 22 | 200 | 29 | 211 | 1.27e-27 | 104 |
| MS.gene25138.t1 | MTR_2g019250 | 34.286 | 210 | 125 | 7 | 1 | 200 | 7 | 213 | 9.30e-27 | 102 |
| MS.gene25138.t1 | MTR_4g017040 | 35.829 | 187 | 109 | 6 | 1 | 179 | 7 | 190 | 1.29e-26 | 102 |
| MS.gene25138.t1 | MTR_4g017050 | 33.810 | 210 | 126 | 7 | 1 | 200 | 7 | 213 | 2.00e-26 | 101 |
| MS.gene25138.t1 | MTR_5g046410 | 33.810 | 210 | 126 | 7 | 1 | 200 | 7 | 213 | 2.34e-26 | 101 |
| MS.gene25138.t1 | MTR_5g046430 | 33.810 | 210 | 126 | 7 | 1 | 200 | 7 | 213 | 2.34e-26 | 101 |
| MS.gene25138.t1 | MTR_4g017030 | 33.810 | 210 | 126 | 7 | 1 | 200 | 7 | 213 | 2.34e-26 | 101 |
| MS.gene25138.t1 | MTR_8g007300 | 32.821 | 195 | 125 | 4 | 2 | 191 | 11 | 204 | 1.16e-25 | 99.4 |
| MS.gene25138.t1 | MTR_2g030895 | 35.465 | 172 | 104 | 4 | 39 | 203 | 7 | 178 | 4.52e-25 | 96.7 |
| MS.gene25138.t1 | MTR_6g005380 | 36.571 | 175 | 101 | 6 | 1 | 167 | 6 | 178 | 4.58e-24 | 95.1 |
| MS.gene25138.t1 | MTR_2g030865 | 34.884 | 172 | 105 | 4 | 39 | 203 | 7 | 178 | 1.27e-23 | 92.8 |
| MS.gene25138.t1 | MTR_3g096330 | 36.601 | 153 | 78 | 3 | 29 | 167 | 584 | 731 | 6.39e-22 | 93.6 |
| MS.gene25138.t1 | MTR_6g005350 | 33.333 | 189 | 117 | 6 | 22 | 203 | 28 | 214 | 3.16e-21 | 87.8 |
| MS.gene25138.t1 | MTR_2g086620 | 32.353 | 170 | 109 | 3 | 38 | 203 | 37 | 204 | 5.31e-20 | 84.3 |
| MS.gene25138.t1 | MTR_2g086630 | 31.765 | 170 | 110 | 3 | 38 | 203 | 37 | 204 | 1.39e-19 | 83.2 |
| MS.gene25138.t1 | MTR_2g086640 | 34.074 | 135 | 88 | 1 | 70 | 203 | 69 | 203 | 7.35e-19 | 81.3 |
| MS.gene25138.t1 | MTR_4g052780 | 33.136 | 169 | 110 | 2 | 38 | 203 | 37 | 205 | 9.04e-19 | 80.9 |
| MS.gene25138.t1 | MTR_4g052770 | 33.136 | 169 | 110 | 2 | 38 | 203 | 37 | 205 | 1.16e-18 | 80.9 |
| MS.gene25138.t1 | MTR_2g031300 | 32.500 | 160 | 82 | 4 | 39 | 192 | 7 | 146 | 1.70e-16 | 73.6 |
| MS.gene25138.t1 | MTR_2g096110 | 30.469 | 128 | 73 | 2 | 41 | 167 | 7 | 119 | 1.27e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25138.t1 | AT1G72610 | 53.368 | 193 | 88 | 1 | 17 | 207 | 16 | 208 | 8.20e-72 | 217 |
| MS.gene25138.t1 | AT5G20630 | 50.000 | 208 | 101 | 2 | 1 | 206 | 4 | 210 | 4.26e-68 | 207 |
| MS.gene25138.t1 | AT1G18980 | 37.073 | 205 | 125 | 2 | 3 | 203 | 14 | 218 | 1.60e-42 | 142 |
| MS.gene25138.t1 | AT1G18970 | 35.122 | 205 | 129 | 2 | 1 | 203 | 16 | 218 | 4.23e-39 | 134 |
| MS.gene25138.t1 | AT3G04200 | 40.838 | 191 | 105 | 4 | 22 | 204 | 33 | 223 | 1.28e-38 | 133 |
| MS.gene25138.t1 | AT3G05930 | 37.363 | 182 | 110 | 3 | 2 | 179 | 8 | 189 | 1.21e-34 | 122 |
| MS.gene25138.t1 | AT5G26700 | 37.438 | 203 | 117 | 5 | 4 | 200 | 8 | 206 | 1.23e-34 | 122 |
| MS.gene25138.t1 | AT1G09560 | 36.022 | 186 | 115 | 2 | 22 | 203 | 30 | 215 | 4.55e-33 | 118 |
| MS.gene25138.t1 | AT5G38960 | 37.306 | 193 | 110 | 7 | 22 | 204 | 32 | 223 | 5.48e-32 | 115 |
| MS.gene25138.t1 | AT1G02335 | 35.443 | 158 | 100 | 1 | 22 | 177 | 30 | 187 | 2.06e-31 | 114 |
| MS.gene25138.t1 | AT3G10080 | 34.715 | 193 | 114 | 5 | 20 | 203 | 30 | 219 | 2.11e-31 | 114 |
| MS.gene25138.t1 | AT3G04150 | 34.112 | 214 | 133 | 4 | 2 | 207 | 12 | 225 | 3.51e-31 | 114 |
| MS.gene25138.t1 | AT3G10080 | 34.715 | 193 | 114 | 5 | 20 | 203 | 101 | 290 | 1.18e-30 | 114 |
| MS.gene25138.t1 | AT3G62020 | 30.918 | 207 | 138 | 3 | 3 | 204 | 10 | 216 | 3.75e-30 | 111 |
| MS.gene25138.t1 | AT3G04150 | 32.159 | 227 | 133 | 4 | 2 | 207 | 12 | 238 | 4.34e-30 | 111 |
| MS.gene25138.t1 | AT3G05950 | 37.895 | 190 | 110 | 4 | 22 | 203 | 32 | 221 | 5.17e-30 | 110 |
| MS.gene25138.t1 | AT5G61750 | 33.523 | 176 | 101 | 3 | 2 | 167 | 5 | 174 | 1.22e-29 | 109 |
| MS.gene25138.t1 | AT5G39110 | 34.579 | 214 | 127 | 5 | 3 | 203 | 7 | 220 | 2.19e-29 | 109 |
| MS.gene25138.t1 | AT1G74820 | 32.558 | 172 | 110 | 1 | 1 | 166 | 15 | 186 | 2.83e-29 | 108 |
| MS.gene25138.t1 | AT5G38910 | 33.971 | 209 | 128 | 5 | 4 | 203 | 12 | 219 | 1.46e-28 | 107 |
| MS.gene25138.t1 | AT3G04190 | 36.649 | 191 | 111 | 6 | 22 | 203 | 32 | 221 | 3.81e-28 | 105 |
| MS.gene25138.t1 | AT5G38940 | 34.737 | 190 | 116 | 4 | 22 | 203 | 32 | 221 | 6.30e-28 | 105 |
| MS.gene25138.t1 | AT5G39160 | 34.896 | 192 | 111 | 5 | 22 | 204 | 30 | 216 | 7.16e-28 | 105 |
| MS.gene25138.t1 | AT5G38940 | 34.737 | 190 | 116 | 4 | 22 | 203 | 56 | 245 | 9.59e-28 | 105 |
| MS.gene25138.t1 | AT5G39160 | 34.896 | 192 | 115 | 5 | 22 | 204 | 30 | 220 | 1.60e-27 | 104 |
| MS.gene25138.t1 | AT5G39190 | 34.896 | 192 | 115 | 5 | 22 | 204 | 30 | 220 | 1.76e-27 | 104 |
| MS.gene25138.t1 | AT5G38930 | 34.737 | 190 | 116 | 5 | 22 | 203 | 32 | 221 | 3.10e-27 | 103 |
| MS.gene25138.t1 | AT5G39120 | 32.243 | 214 | 133 | 6 | 1 | 203 | 7 | 219 | 5.04e-27 | 103 |
| MS.gene25138.t1 | AT5G39130 | 33.488 | 215 | 129 | 6 | 3 | 204 | 7 | 220 | 2.48e-26 | 101 |
| MS.gene25138.t1 | AT3G62020 | 31.609 | 174 | 114 | 3 | 35 | 203 | 13 | 186 | 3.19e-26 | 100 |
| MS.gene25138.t1 | AT5G39150 | 30.986 | 213 | 136 | 5 | 1 | 203 | 8 | 219 | 4.49e-26 | 100 |
| MS.gene25138.t1 | AT5G39180 | 30.986 | 213 | 136 | 5 | 1 | 203 | 8 | 219 | 6.58e-26 | 100 |
| MS.gene25138.t1 | AT3G04180 | 35.204 | 196 | 107 | 7 | 22 | 203 | 32 | 221 | 1.78e-25 | 99.0 |
| MS.gene25138.t1 | AT4G14630 | 34.762 | 210 | 125 | 7 | 5 | 203 | 14 | 222 | 2.51e-25 | 98.6 |
| MS.gene25138.t1 | AT3G04170 | 36.082 | 194 | 105 | 8 | 22 | 203 | 32 | 218 | 2.92e-24 | 95.9 |
| MS.gene25138.t1 | AT1G10460 | 34.568 | 162 | 99 | 4 | 22 | 176 | 25 | 186 | 5.31e-24 | 95.1 |
| MS.gene25138.t1 | AT5G39160 | 35.065 | 154 | 94 | 3 | 56 | 204 | 46 | 198 | 2.84e-23 | 92.8 |
| MS.gene25138.t1 | AT5G39190 | 35.065 | 154 | 94 | 3 | 56 | 204 | 46 | 198 | 3.12e-23 | 92.4 |
Find 27 sgRNAs with CRISPR-Local
Find 41 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAATTTCCTGCTGTTAA+TGG | 0.167755 | 8.4:-72978130 | MS.gene25138:CDS |
| GTTTACTCCAACTTCAATTC+AGG | 0.252771 | 8.4:-72978202 | MS.gene25138:CDS |
| ATTCTTGATCTTGCTTTGTT+TGG | 0.254800 | 8.4:-72977839 | MS.gene25138:CDS |
| ACTTTCTAAAGGTCAAATTT+TGG | 0.284643 | 8.4:-72977957 | MS.gene25138:CDS |
| TTTCCTGCTGTTAATGGTCT+TGG | 0.310444 | 8.4:-72978124 | MS.gene25138:CDS |
| TCTTCTCCACAAACCCCTTC+AGG | 0.334680 | 8.4:-72978262 | MS.gene25138:CDS |
| TGGTTTATCAGCAGCAAGAT+TGG | 0.394978 | 8.4:-72978104 | MS.gene25138:CDS |
| TAATACAGAAGCATTGGTTA+TGG | 0.446790 | 8.4:+72978306 | None:intergenic |
| GGGTAGCCTGAAGGGGTTTG+TGG | 0.451614 | 8.4:+72978256 | None:intergenic |
| GCATTCACATCGCGGCGCTT+CGG | 0.455830 | 8.4:-72978053 | MS.gene25138:CDS |
| GGAAATTGATTAACAGATGC+AGG | 0.477175 | 8.4:+72978142 | None:intergenic |
| TTTATCAAGACACTTTCTAA+AGG | 0.499284 | 8.4:-72977968 | MS.gene25138:CDS |
| CGCTTCGGAGTTAATGATTG+TGG | 0.511937 | 8.4:-72978038 | MS.gene25138:CDS |
| GAAGTCTAATACAGAAGCAT+TGG | 0.518908 | 8.4:+72978300 | None:intergenic |
| AGTGTTTCCTGAATTGAAGT+TGG | 0.520987 | 8.4:+72978195 | None:intergenic |
| GCAAGATTGGACTTCGACGT+TGG | 0.522667 | 8.4:-72978091 | MS.gene25138:CDS |
| GTACAAGGTCGTATAACTGC+TGG | 0.537303 | 8.4:-72978016 | MS.gene25138:CDS |
| AGATCAAGAATTTGTGAACC+AGG | 0.540464 | 8.4:+72977851 | None:intergenic |
| TTTGCATGGGTAGCCTGAAG+GGG | 0.553451 | 8.4:+72978249 | None:intergenic |
| AGATTGGACTTCGACGTTGG+AGG | 0.578726 | 8.4:-72978088 | MS.gene25138:CDS |
| GCGCCGCGATGTGAATGCAT+TGG | 0.582043 | 8.4:+72978058 | None:intergenic |
| AAACCAAGACCATTAACAGC+AGG | 0.584052 | 8.4:+72978121 | None:intergenic |
| GAGTTAATGATTGTGGTACA+AGG | 0.597384 | 8.4:-72978031 | MS.gene25138:CDS |
| GATCAAGAATTTGTGAACCA+GGG | 0.620980 | 8.4:+72977852 | None:intergenic |
| AATGTGAGAGAAGAGTTAAG+AGG | 0.621704 | 8.4:+72978329 | None:intergenic |
| TGAAAATGCAACAAACCTTG+TGG | 0.665243 | 8.4:+72977929 | None:intergenic |
| ATACCAATGCATTCACATCG+CGG | 0.682883 | 8.4:-72978061 | MS.gene25138:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTTATCAAGACACTTTCTAA+AGG | - | chr8.4:72978123-72978142 | MS.gene25138:CDS | 25.0% |
| !! | ATTTTCAATATAATGCTGGA+AGG | - | chr8.4:72978178-72978197 | MS.gene25138:CDS | 25.0% |
| !! | TTGCATTTTCAATATAATGC+TGG | - | chr8.4:72978174-72978193 | MS.gene25138:CDS | 25.0% |
| !!! | AAAAAGCTTAAGGCTATTTT+TGG | - | chr8.4:72978333-72978352 | MS.gene25138:CDS | 25.0% |
| !!! | ACTTTCTAAAGGTCAAATTT+TGG | - | chr8.4:72978134-72978153 | MS.gene25138:CDS | 25.0% |
| !!! | ATTGTTACTGATTTTTTGCA+TGG | + | chr8.4:72977859-72977878 | None:intergenic | 25.0% |
| !!! | TTGTTACTGATTTTTTGCAT+GGG | + | chr8.4:72977858-72977877 | None:intergenic | 25.0% |
| AATCAATTTCCTGCTGTTAA+TGG | - | chr8.4:72977961-72977980 | MS.gene25138:CDS | 30.0% | |
| TGCTCAAGTTAAAAAGCTTA+AGG | - | chr8.4:72978323-72978342 | MS.gene25138:CDS | 30.0% | |
| ! | ATTCTTGATCTTGCTTTGTT+TGG | - | chr8.4:72978252-72978271 | MS.gene25138:CDS | 30.0% |
| !! | TAATACAGAAGCATTGGTTA+TGG | + | chr8.4:72977788-72977807 | None:intergenic | 30.0% |
| !!! | TTAAGCTTTTTAACTTGAGC+AGG | + | chr8.4:72978324-72978343 | None:intergenic | 30.0% |
| AATGTGAGAGAAGAGTTAAG+AGG | + | chr8.4:72977765-72977784 | None:intergenic | 35.0% | |
| AGATCAAGAATTTGTGAACC+AGG | + | chr8.4:72978243-72978262 | None:intergenic | 35.0% | |
| AGTGTTTCCTGAATTGAAGT+TGG | + | chr8.4:72977899-72977918 | None:intergenic | 35.0% | |
| GAGTTAATGATTGTGGTACA+AGG | - | chr8.4:72978060-72978079 | MS.gene25138:CDS | 35.0% | |
| GATCAAGAATTTGTGAACCA+GGG | + | chr8.4:72978242-72978261 | None:intergenic | 35.0% | |
| GGAAATTGATTAACAGATGC+AGG | + | chr8.4:72977952-72977971 | None:intergenic | 35.0% | |
| GTTTACTCCAACTTCAATTC+AGG | - | chr8.4:72977889-72977908 | MS.gene25138:CDS | 35.0% | |
| TGAAAATGCAACAAACCTTG+TGG | + | chr8.4:72978165-72978184 | None:intergenic | 35.0% | |
| ! | GAAGTCTAATACAGAAGCAT+TGG | + | chr8.4:72977794-72977813 | None:intergenic | 35.0% |
| !!! | AAGCTTAAGGCTATTTTTGG+TGG | - | chr8.4:72978336-72978355 | MS.gene25138:CDS | 35.0% |
| !!! | AGCTTAAGGCTATTTTTGGT+GGG | - | chr8.4:72978337-72978356 | MS.gene25138:CDS | 35.0% |
| AAACCAAGACCATTAACAGC+AGG | + | chr8.4:72977973-72977992 | None:intergenic | 40.0% | |
| ATACCAATGCATTCACATCG+CGG | - | chr8.4:72978030-72978049 | MS.gene25138:CDS | 40.0% | |
| TGGTTTATCAGCAGCAAGAT+TGG | - | chr8.4:72977987-72978006 | MS.gene25138:CDS | 40.0% | |
| TTTCCTGCTGTTAATGGTCT+TGG | - | chr8.4:72977967-72977986 | MS.gene25138:CDS | 40.0% | |
| ! | ACTTTTAGTAGTGAGAACCC+TGG | - | chr8.4:72978222-72978241 | MS.gene25138:CDS | 40.0% |
| !!! | CAAATTTTGGCTCTACCACA+AGG | - | chr8.4:72978147-72978166 | MS.gene25138:CDS | 40.0% |
| CGCTTCGGAGTTAATGATTG+TGG | - | chr8.4:72978053-72978072 | MS.gene25138:CDS | 45.0% | |
| GTACAAGGTCGTATAACTGC+TGG | - | chr8.4:72978075-72978094 | MS.gene25138:CDS | 45.0% | |
| ! | TTTTGCATGGGTAGCCTGAA+GGG | + | chr8.4:72977846-72977865 | None:intergenic | 45.0% |
| ! | TTTTTGCATGGGTAGCCTGA+AGG | + | chr8.4:72977847-72977866 | None:intergenic | 45.0% |
| !!! | AAGGCTATTTTTGGTGGGAG+TGG | - | chr8.4:72978342-72978361 | MS.gene25138:CDS | 45.0% |
| AGATTGGACTTCGACGTTGG+AGG | - | chr8.4:72978003-72978022 | MS.gene25138:CDS | 50.0% | |
| GCAAGATTGGACTTCGACGT+TGG | - | chr8.4:72978000-72978019 | MS.gene25138:CDS | 50.0% | |
| TCTTCTCCACAAACCCCTTC+AGG | - | chr8.4:72977829-72977848 | MS.gene25138:CDS | 50.0% | |
| TTTGCATGGGTAGCCTGAAG+GGG | + | chr8.4:72977845-72977864 | None:intergenic | 50.0% | |
| GCATTCACATCGCGGCGCTT+CGG | - | chr8.4:72978038-72978057 | MS.gene25138:CDS | 60.0% | |
| GCGCCGCGATGTGAATGCAT+TGG | + | chr8.4:72978036-72978055 | None:intergenic | 60.0% | |
| GGGTAGCCTGAAGGGGTTTG+TGG | + | chr8.4:72977838-72977857 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 72977745 | 72978368 | 72977745 | ID=MS.gene25138 |
| chr8.4 | mRNA | 72977745 | 72978368 | 72977745 | ID=MS.gene25138.t1;Parent=MS.gene25138 |
| chr8.4 | exon | 72977745 | 72978368 | 72977745 | ID=MS.gene25138.t1.exon1;Parent=MS.gene25138.t1 |
| chr8.4 | CDS | 72977745 | 72978368 | 72977745 | ID=cds.MS.gene25138.t1;Parent=MS.gene25138.t1 |
| Gene Sequence |
| Protein sequence |
