Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25678.t1 | XP_013450334.1 | 95 | 383 | 19 | 0 | 1 | 383 | 1 | 383 | 5.00E-214 | 753.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25678.t1 | Q9FVQ0 | 47.3 | 376 | 198 | 0 | 8 | 383 | 5 | 380 | 1.0e-106 | 388.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25678.t1 | A0A072U3V7 | 95.0 | 383 | 19 | 0 | 1 | 383 | 1 | 383 | 3.6e-214 | 753.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049983 | MS.gene25678 | 0.824393 | 8.27E-54 | -1.69E-46 |
MS.gene050654 | MS.gene25678 | 0.801263 | 9.78E-49 | -1.69E-46 |
MS.gene051744 | MS.gene25678 | 0.802604 | 5.18E-49 | -1.69E-46 |
MS.gene052307 | MS.gene25678 | 0.819811 | 9.55E-53 | -1.69E-46 |
MS.gene052609 | MS.gene25678 | 0.831943 | 1.25E-55 | -1.69E-46 |
MS.gene053079 | MS.gene25678 | 0.809794 | 1.59E-50 | -1.69E-46 |
MS.gene054651 | MS.gene25678 | 0.803244 | 3.82E-49 | -1.69E-46 |
MS.gene055513 | MS.gene25678 | 0.805342 | 1.40E-49 | -1.69E-46 |
MS.gene056699 | MS.gene25678 | 0.823971 | 1.04E-53 | -1.69E-46 |
MS.gene057034 | MS.gene25678 | 0.827241 | 1.74E-54 | -1.69E-46 |
MS.gene057208 | MS.gene25678 | 0.821749 | 3.42E-53 | -1.69E-46 |
MS.gene058009 | MS.gene25678 | 0.800931 | 1.14E-48 | -1.69E-46 |
MS.gene058010 | MS.gene25678 | 0.829204 | 5.87E-55 | -1.69E-46 |
MS.gene058292 | MS.gene25678 | 0.804047 | 2.61E-49 | -1.69E-46 |
MS.gene060933 | MS.gene25678 | 0.806149 | 9.46E-50 | -1.69E-46 |
MS.gene060935 | MS.gene25678 | 0.807638 | 4.58E-50 | -1.69E-46 |
MS.gene060937 | MS.gene25678 | 0.80804 | 3.77E-50 | -1.69E-46 |
MS.gene061100 | MS.gene25678 | 0.805351 | 1.39E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25678.t1 | MTR_7g107690 | 95.039 | 383 | 19 | 0 | 1 | 383 | 1 | 383 | 0.0 | 759 |
MS.gene25678.t1 | MTR_7g107710 | 67.647 | 374 | 119 | 2 | 8 | 380 | 6 | 378 | 0.0 | 536 |
MS.gene25678.t1 | MTR_8g432640 | 48.936 | 376 | 189 | 1 | 8 | 383 | 6 | 378 | 6.17e-136 | 393 |
MS.gene25678.t1 | MTR_5g033260 | 49.593 | 369 | 186 | 0 | 8 | 376 | 6 | 374 | 2.77e-134 | 389 |
MS.gene25678.t1 | MTR_3g088925 | 49.051 | 369 | 188 | 0 | 8 | 376 | 7 | 375 | 9.79e-132 | 383 |
MS.gene25678.t1 | MTR_3g088945 | 49.051 | 369 | 188 | 0 | 8 | 376 | 7 | 375 | 1.52e-131 | 382 |
MS.gene25678.t1 | MTR_3g088955 | 48.238 | 369 | 191 | 0 | 8 | 376 | 7 | 375 | 7.53e-129 | 376 |
MS.gene25678.t1 | MTR_4g051642 | 48.238 | 369 | 190 | 1 | 8 | 376 | 7 | 374 | 5.24e-126 | 369 |
MS.gene25678.t1 | MTR_3g109520 | 45.910 | 379 | 199 | 2 | 9 | 382 | 40 | 417 | 2.63e-122 | 360 |
MS.gene25678.t1 | MTR_6g086870 | 44.974 | 378 | 199 | 3 | 9 | 378 | 21 | 397 | 1.56e-119 | 352 |
MS.gene25678.t1 | MTR_1g008380 | 46.649 | 373 | 192 | 3 | 9 | 376 | 43 | 413 | 8.16e-118 | 349 |
MS.gene25678.t1 | MTR_1g069275 | 44.474 | 380 | 201 | 5 | 9 | 382 | 26 | 401 | 2.66e-117 | 347 |
MS.gene25678.t1 | MTR_1g046230 | 44.267 | 375 | 200 | 4 | 9 | 376 | 25 | 397 | 2.09e-113 | 337 |
MS.gene25678.t1 | MTR_7g099330 | 42.744 | 379 | 205 | 4 | 9 | 382 | 25 | 396 | 2.67e-113 | 337 |
MS.gene25678.t1 | MTR_1g011630 | 42.895 | 380 | 206 | 4 | 9 | 383 | 17 | 390 | 8.40e-113 | 335 |
MS.gene25678.t1 | MTR_7g099160 | 39.550 | 311 | 176 | 4 | 77 | 382 | 214 | 517 | 2.93e-76 | 245 |
MS.gene25678.t1 | MTR_3g096030 | 39.227 | 181 | 86 | 1 | 4 | 184 | 2 | 158 | 4.05e-43 | 147 |
MS.gene25678.t1 | MTR_1g041605 | 87.500 | 40 | 5 | 0 | 112 | 151 | 29 | 68 | 4.87e-18 | 78.2 |
MS.gene25678.t1 | MTR_8g037910 | 25.106 | 235 | 142 | 5 | 7 | 214 | 3 | 230 | 5.26e-14 | 72.0 |
MS.gene25678.t1 | MTR_8g037910 | 25.106 | 235 | 142 | 5 | 7 | 214 | 3 | 230 | 7.17e-14 | 72.4 |
MS.gene25678.t1 | MTR_8g037910 | 25.106 | 235 | 142 | 5 | 7 | 214 | 3 | 230 | 1.43e-13 | 72.0 |
MS.gene25678.t1 | MTR_8g037880 | 23.684 | 228 | 141 | 6 | 7 | 206 | 3 | 225 | 1.96e-12 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25678.t1 | AT1G48910 | 47.340 | 376 | 198 | 0 | 8 | 383 | 5 | 380 | 1.24e-137 | 398 |
MS.gene25678.t1 | AT1G21430 | 45.333 | 375 | 200 | 4 | 8 | 380 | 9 | 380 | 1.09e-122 | 360 |
MS.gene25678.t1 | AT1G04610 | 46.011 | 376 | 193 | 5 | 9 | 376 | 38 | 411 | 5.10e-120 | 355 |
MS.gene25678.t1 | AT4G13260 | 44.772 | 373 | 200 | 2 | 9 | 376 | 29 | 400 | 1.67e-118 | 350 |
MS.gene25678.t1 | AT5G25620 | 45.867 | 375 | 193 | 4 | 9 | 376 | 33 | 404 | 1.77e-116 | 345 |
MS.gene25678.t1 | AT5G25620 | 45.867 | 375 | 193 | 4 | 9 | 376 | 33 | 404 | 3.10e-116 | 345 |
MS.gene25678.t1 | AT5G43890 | 43.421 | 380 | 206 | 5 | 9 | 381 | 26 | 403 | 2.75e-114 | 340 |
MS.gene25678.t1 | AT4G28720 | 43.307 | 381 | 206 | 6 | 9 | 381 | 26 | 404 | 3.84e-114 | 339 |
MS.gene25678.t1 | AT1G04180 | 43.536 | 379 | 204 | 5 | 9 | 381 | 26 | 400 | 4.11e-113 | 337 |
MS.gene25678.t1 | AT4G32540 | 43.733 | 375 | 198 | 5 | 9 | 376 | 22 | 390 | 8.37e-113 | 336 |
MS.gene25678.t1 | AT4G32540 | 43.316 | 374 | 199 | 5 | 9 | 376 | 22 | 388 | 3.51e-112 | 334 |
MS.gene25678.t1 | AT5G11320 | 44.772 | 373 | 193 | 4 | 9 | 376 | 18 | 382 | 1.23e-111 | 332 |
MS.gene25678.t1 | AT2G33230 | 43.883 | 376 | 200 | 5 | 9 | 376 | 33 | 405 | 1.36e-106 | 320 |
MS.gene25678.t1 | AT5G11320 | 45.201 | 323 | 165 | 3 | 9 | 326 | 18 | 333 | 3.60e-96 | 291 |
MS.gene25678.t1 | AT4G13260 | 46.454 | 282 | 146 | 1 | 9 | 285 | 29 | 310 | 4.65e-93 | 281 |
MS.gene25678.t1 | AT4G13260 | 40.339 | 295 | 169 | 3 | 87 | 376 | 5 | 297 | 2.30e-77 | 241 |
MS.gene25678.t1 | AT1G62560 | 26.293 | 232 | 138 | 6 | 5 | 206 | 10 | 238 | 3.51e-15 | 77.0 |
MS.gene25678.t1 | AT1G62560 | 26.638 | 229 | 135 | 6 | 8 | 206 | 13 | 238 | 4.17e-15 | 77.0 |
MS.gene25678.t1 | AT1G65860 | 26.316 | 228 | 140 | 3 | 5 | 205 | 10 | 236 | 9.54e-15 | 75.9 |
MS.gene25678.t1 | AT1G12160 | 24.457 | 368 | 172 | 12 | 8 | 342 | 12 | 306 | 9.49e-14 | 72.8 |
MS.gene25678.t1 | AT1G12140 | 27.602 | 221 | 147 | 5 | 49 | 258 | 74 | 292 | 1.31e-13 | 72.4 |
MS.gene25678.t1 | AT1G12140 | 27.602 | 221 | 147 | 5 | 49 | 258 | 74 | 292 | 1.31e-13 | 72.4 |
MS.gene25678.t1 | AT1G19250 | 27.049 | 244 | 133 | 10 | 2 | 205 | 7 | 245 | 2.03e-13 | 72.0 |
MS.gene25678.t1 | AT5G07800 | 26.336 | 262 | 144 | 7 | 2 | 226 | 10 | 259 | 5.76e-13 | 70.5 |
MS.gene25678.t1 | AT5G61290 | 27.386 | 241 | 135 | 6 | 1 | 205 | 9 | 245 | 8.66e-13 | 69.7 |
MS.gene25678.t1 | AT1G62620 | 22.511 | 231 | 143 | 4 | 8 | 205 | 13 | 240 | 8.92e-12 | 66.6 |
MS.gene25678.t1 | AT1G62540 | 27.511 | 229 | 136 | 4 | 5 | 205 | 10 | 236 | 1.12e-11 | 66.6 |
MS.gene25678.t1 | AT1G62620 | 22.709 | 251 | 155 | 5 | 8 | 222 | 13 | 260 | 1.15e-11 | 66.2 |
MS.gene25678.t1 | AT1G62540 | 27.511 | 229 | 136 | 4 | 5 | 205 | 10 | 236 | 1.21e-11 | 66.2 |
MS.gene25678.t1 | AT1G62540 | 27.511 | 229 | 136 | 4 | 5 | 205 | 10 | 236 | 1.22e-11 | 66.2 |
MS.gene25678.t1 | AT1G12200 | 29.255 | 188 | 121 | 6 | 80 | 258 | 113 | 297 | 4.10e-11 | 64.3 |
MS.gene25678.t1 | AT1G12200 | 29.255 | 188 | 121 | 6 | 80 | 258 | 113 | 297 | 5.93e-11 | 64.3 |
Find 0 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATCATTAAATCAAAATAATT+TGG | - | 51704:9596-9615 | MS.gene25678:intron | 10.0% |
!! | TAATATATTCAATATAGTAT+TGG | + | 51704:9315-9334 | MS.gene25678:intergenic | 10.0% |
!! | TAGAATAAATATATAAATGA+CGG | - | 51704:8412-8431 | MS.gene25678:intron | 10.0% |
!!! | AGTTTTTTATTTTTAAAACT+CGG | - | 51704:9958-9977 | MS.gene25678:intron | 10.0% |
!!! | TAATTAATTATTTTTTGGTA+GGG | - | 51704:11019-11038 | MS.gene25678:CDS | 10.0% |
!! | AAAACAAAACAAAAAACATT+TGG | + | 51704:7993-8012 | MS.gene25678:intergenic | 15.0% |
!! | AAAATAAAGGATTAAATTGA+TGG | - | 51704:9107-9126 | MS.gene25678:intron | 15.0% |
!! | AACAAATTTATTTAAGTGAA+AGG | - | 51704:10319-10338 | MS.gene25678:intron | 15.0% |
!! | AATAAACAATGTAATTAGAA+TGG | - | 51704:9554-9573 | MS.gene25678:intron | 15.0% |
!! | AGAATAAATATATAAATGAC+GGG | - | 51704:8413-8432 | MS.gene25678:intron | 15.0% |
!! | TAAAAATAGCGAAATTAAAA+AGG | - | 51704:9912-9931 | MS.gene25678:intron | 15.0% |
!! | TAATATATGTTACATGAAAA+TGG | - | 51704:10929-10948 | MS.gene25678:CDS | 15.0% |
!! | TTTGCATAAACAAATTTATT+AGG | + | 51704:10330-10311 | MS.gene25678:intergenic | 15.0% |
!!! | AATTAATTATTTTTTGGTAG+GGG | - | 51704:11020-11039 | MS.gene25678:CDS | 15.0% |
!!! | ACAAATATTTTGTTTTTCAA+AGG | + | 51704:9883-9902 | MS.gene25678:intergenic | 15.0% |
!!! | CAAATATTTTGTTTTTCAAA+GGG | + | 51704:9882-9901 | MS.gene25678:intergenic | 15.0% |
!!! | CATTGTTTATTATTTTAGAT+TGG | + | 51704:9545-9564 | MS.gene25678:intergenic | 15.0% |
!!! | CTAATTAATTATTTTTTGGT+AGG | - | 51704:11018-11037 | MS.gene25678:CDS | 15.0% |
!!! | TAACTTTTTTTTTGAAAGAA+AGG | - | 51704:10347-10366 | MS.gene25678:intron | 15.0% |
!!! | TATTGTAAAAACTTTTGTTT+AGG | + | 51704:7524-7543 | MS.gene25678:intergenic | 15.0% |
!!! | TTTATTATTTTAGATTGGTT+TGG | + | 51704:9540-9559 | MS.gene25678:intergenic | 15.0% |
!! | ACCTAAAATAACATTTAGAT+GGG | - | 51704:10281-10300 | MS.gene25678:intron | 20.0% |
!! | AGGTTATATAACTATAAACA+AGG | - | 51704:10367-10386 | MS.gene25678:intron | 20.0% |
!! | ATTAGTATAAAGTATATCTG+AGG | + | 51704:8602-8621 | MS.gene25678:intergenic | 20.0% |
!! | GATAATACATAATATATGCA+AGG | - | 51704:9169-9188 | MS.gene25678:intron | 20.0% |
!! | GATGAAATAATGATAACTTA+TGG | + | 51704:9004-9023 | MS.gene25678:intergenic | 20.0% |
!! | GTATTCAAGTACATAATTTA+AGG | + | 51704:9064-9083 | MS.gene25678:intergenic | 20.0% |
!! | TACCTAAAATAACATTTAGA+TGG | - | 51704:10280-10299 | MS.gene25678:intron | 20.0% |
!! | TCCATAAACAAGTAAAATAA+AGG | - | 51704:9094-9113 | MS.gene25678:intron | 20.0% |
!! | TTAGTATAAAGTATATCTGA+GGG | + | 51704:8601-8620 | MS.gene25678:intergenic | 20.0% |
!!! | ATGTCATTTTACTAAAAAGA+TGG | - | 51704:10394-10413 | MS.gene25678:intron | 20.0% |
!!! | ATTAATTATTTTTTGGTAGG+GGG | - | 51704:11021-11040 | MS.gene25678:CDS | 20.0% |
!!! | CTAAATGTTATTTTAGGTAT+TGG | + | 51704:10279-10298 | MS.gene25678:intergenic | 20.0% |
!!! | CTTTTTGCATTTTTTAAAAC+TGG | - | 51704:9804-9823 | MS.gene25678:CDS | 20.0% |
!!! | TCCTTTATTTTACTTGTTTA+TGG | + | 51704:9098-9117 | MS.gene25678:intergenic | 20.0% |
! | AAAACTCTATATCAGACTAT+AGG | - | 51704:8149-8168 | MS.gene25678:intron | 25.0% |
! | AACATACGTCAAAGTATATA+TGG | + | 51704:10982-11001 | MS.gene25678:intergenic | 25.0% |
! | AATGAAAGAGTAATAGTTGT+TGG | - | 51704:7305-7324 | MS.gene25678:CDS | 25.0% |
! | AATTAAGTCTCAAGAGTTAA+AGG | - | 51704:8877-8896 | MS.gene25678:intron | 25.0% |
! | ACCTCTTAAAAGAAATTAAG+AGG | - | 51704:9283-9302 | MS.gene25678:intron | 25.0% |
! | ATATATACTTTGACGTATGT+TGG | - | 51704:10981-11000 | MS.gene25678:CDS | 25.0% |
! | ATGCTTAGTAAAATGGTTTA+CGG | - | 51704:8752-8771 | MS.gene25678:intron | 25.0% |
! | CAATAGTTTAAAGACCAAAT+TGG | - | 51704:9136-9155 | MS.gene25678:intron | 25.0% |
! | CACTCTTAAAAGAAATTAAG+TGG | - | 51704:10195-10214 | MS.gene25678:intron | 25.0% |
! | CCTAAAATAACATTTAGATG+GGG | - | 51704:10282-10301 | MS.gene25678:intron | 25.0% |
! | GATTACAAATACAGATTTGT+AGG | + | 51704:8112-8131 | MS.gene25678:intergenic | 25.0% |
! | TACTTGACCTTCATATAAAA+GGG | + | 51704:8818-8837 | MS.gene25678:intergenic | 25.0% |
! | TGTACTTGAATACATCAATT+TGG | - | 51704:9071-9090 | MS.gene25678:intron | 25.0% |
! | TGTGATTGATTATGTAACTT+TGG | - | 51704:8530-8549 | MS.gene25678:intron | 25.0% |
! | TTTAAAGACCAAATTGGTAT+TGG | - | 51704:9142-9161 | MS.gene25678:intron | 25.0% |
!! | AACCATATTAGGCAAATTTT+AGG | + | 51704:8965-8984 | MS.gene25678:intergenic | 25.0% |
!! | AAGAATGTCCTTTTCAAAAA+TGG | - | 51704:10668-10687 | MS.gene25678:CDS | 25.0% |
!! | ACCTCTTAATTTCTTTTAAG+AGG | + | 51704:9287-9306 | MS.gene25678:intergenic | 25.0% |
!! | AGATTTTGTATAGAATTGCA+CGG | - | 51704:8315-8334 | MS.gene25678:intron | 25.0% |
!! | CAATTTGATCTTTCTTTTTG+TGG | + | 51704:9217-9236 | MS.gene25678:intergenic | 25.0% |
!! | TGTTAGTTTCAAGACTAAAT+TGG | - | 51704:9246-9265 | MS.gene25678:intron | 25.0% |
!! | TTTTATATGAAGGTCAAGTA+CGG | - | 51704:8818-8837 | MS.gene25678:intron | 25.0% |
!!! | AAAATTGTTTTGCTTCACTA+TGG | - | 51704:7402-7421 | MS.gene25678:CDS | 25.0% |
!!! | ATTGTGTTGTATGTTACTTT+AGG | - | 51704:10613-10632 | MS.gene25678:CDS | 25.0% |
!!! | CAACAAAAAGGTTTTTTACT+CGG | + | 51704:8178-8197 | MS.gene25678:intergenic | 25.0% |
!!! | TTTTAAGAGTGTTAGTTTCA+GGG | + | 51704:10186-10205 | MS.gene25678:intergenic | 25.0% |
!!! | TTTTGTTTAGGAATGTATGA+TGG | + | 51704:7512-7531 | MS.gene25678:intergenic | 25.0% |
AAAATTATAGACAGAGCACA+TGG | + | 51704:8063-8082 | MS.gene25677:intergenic | 30.0% | |
AAGTATCCTATTATTGACGT+TGG | - | 51704:8842-8861 | MS.gene25678:intron | 30.0% | |
AAGTTGACTAAAACAACTCT+TGG | + | 51704:10008-10027 | MS.gene25678:intergenic | 30.0% | |
AGAATTGCACGGATATATAT+GGG | - | 51704:8326-8345 | MS.gene25678:intron | 30.0% | |
AGCTTGTACATTAAATCTTG+AGG | + | 51704:9453-9472 | MS.gene25678:intergenic | 30.0% | |
ATATGCTGGAGAAGAATTTA+AGG | + | 51704:9851-9870 | MS.gene25678:intergenic | 30.0% | |
ATATTGAAATCCACAAGAAG+TGG | - | 51704:9410-9429 | MS.gene25678:intron | 30.0% | |
ATTCAACTGGGTTTAAGAAT+GGG | - | 51704:7774-7793 | MS.gene25678:CDS | 30.0% | |
CACCTAAAATTTGCCTAATA+TGG | - | 51704:8960-8979 | MS.gene25678:intron | 30.0% | |
GAATACCATCATCATTCAAA+AGG | + | 51704:11054-11073 | MS.gene25678:intergenic | 30.0% | |
GTACTTGACCTTCATATAAA+AGG | + | 51704:8819-8838 | MS.gene25678:intergenic | 30.0% | |
GTAGAAATAGAATGCATAAG+TGG | - | 51704:10644-10663 | MS.gene25678:CDS | 30.0% | |
TACATAATATATGCAAGGTC+CGG | - | 51704:9174-9193 | MS.gene25678:intron | 30.0% | |
TAGAATTGCACGGATATATA+TGG | - | 51704:8325-8344 | MS.gene25678:intron | 30.0% | |
TATCCATACCAATACCAATT+TGG | + | 51704:9153-9172 | MS.gene25678:intergenic | 30.0% | |
TGAGACTATAAGGTGTATTT+GGG | - | 51704:9510-9529 | MS.gene25678:intron | 30.0% | |
TGTAGAAACCAAAAGAAATG+TGG | - | 51704:10956-10975 | MS.gene25678:CDS | 30.0% | |
TGTTTGCATATTCTACTAAG+AGG | + | 51704:9347-9366 | MS.gene25678:intergenic | 30.0% | |
TTGTACATTAAATCTTGAGG+AGG | + | 51704:9450-9469 | MS.gene25678:intergenic | 30.0% | |
TTTGATGTGTGCATCTTAAA+AGG | + | 51704:8016-8035 | MS.gene25678:intergenic | 30.0% | |
! | AAAGGTACGTTAGCAATAAT+TGG | - | 51704:8895-8914 | MS.gene25678:intron | 30.0% |
! | AAGAATGGTTTGTATTGTGT+TGG | - | 51704:11106-11125 | MS.gene25678:CDS | 30.0% |
! | ATATATGGCCACATTTCTTT+TGG | + | 51704:10967-10986 | MS.gene25678:intergenic | 30.0% |
! | ATTGACTTCGAAACCATATT+AGG | + | 51704:8976-8995 | MS.gene25678:intergenic | 30.0% |
! | CAAAACAATTTTCTCTTTCG+AGG | + | 51704:7394-7413 | MS.gene25678:intergenic | 30.0% |
! | CTTCAATTTCAGGTACAAAA+GGG | + | 51704:7724-7743 | MS.gene25678:intergenic | 30.0% |
! | CTTTTGTACCTGAAATTGAA+GGG | - | 51704:7723-7742 | MS.gene25678:intron | 30.0% |
! | GATTACCTTTTGAATGATGA+TGG | - | 51704:11046-11065 | MS.gene25678:CDS | 30.0% |
! | TCTGATGAAGTATTTGTCAA+TGG | - | 51704:8706-8725 | MS.gene25678:intron | 30.0% |
! | TTGAGACTTAATTTTGCGAA+AGG | + | 51704:8870-8889 | MS.gene25678:intergenic | 30.0% |
! | TTTGATCTTTCTTTTTGTGG+TGG | + | 51704:9214-9233 | MS.gene25678:intergenic | 30.0% |
!! | AAGAAGTGGATAAGTTGATT+TGG | - | 51704:9424-9443 | MS.gene25678:intron | 30.0% |
!! | ATGAACATGTTCTTGTTGTT+GGG | - | 51704:7810-7829 | MS.gene25678:CDS | 30.0% |
!! | CTTATGCATTCTATTTCTAC+CGG | + | 51704:10644-10663 | MS.gene25678:intergenic | 30.0% |
!! | GCAATTGACCATTTTTGAAA+AGG | + | 51704:10679-10698 | MS.gene25678:intergenic | 30.0% |
!! | GGTATTGGTTATGTAACTAT+TGG | + | 51704:10264-10283 | MS.gene25678:intergenic | 30.0% |
!! | TTTAAGAGTGTTAGTTTCAG+GGG | + | 51704:10185-10204 | MS.gene25678:intergenic | 30.0% |
!!! | CCCCATCTAAATGTTATTTT+AGG | + | 51704:10285-10304 | MS.gene25678:intergenic | 30.0% |
!!! | CCTTTTTGTTGATGATGAAA+CGG | - | 51704:8187-8206 | MS.gene25678:intron | 30.0% |
!!! | CTTTTAAGAGTGTTAGTTTC+AGG | + | 51704:10187-10206 | MS.gene25678:intergenic | 30.0% |
!!! | CTTTTTGTTGATGATGAAAC+GGG | - | 51704:8188-8207 | MS.gene25678:intron | 30.0% |
!!! | TATGTTACTTTAGGTTTTGC+CGG | - | 51704:10622-10641 | MS.gene25678:CDS | 30.0% |
AACATCAACAACAGCAACAA+CGG | - | 51704:10859-10878 | MS.gene25678:CDS | 35.0% | |
AAGGCTATGAATAAGGATTC+CGG | - | 51704:7641-7660 | MS.gene25678:intron | 35.0% | |
AAGGTTCCAACGTCAATAAT+AGG | + | 51704:8851-8870 | MS.gene25678:intergenic | 35.0% | |
ACATAATATATGCAAGGTCC+GGG | - | 51704:9175-9194 | MS.gene25678:intron | 35.0% | |
ACGAATACAATGTAATGTGC+AGG | - | 51704:8643-8662 | MS.gene25678:intron | 35.0% | |
ACGTTAGCAATAATTGGCAT+TGG | - | 51704:8901-8920 | MS.gene25678:intron | 35.0% | |
AGTTGAATGAATCACTTTCC+CGG | + | 51704:7762-7781 | MS.gene25678:intergenic | 35.0% | |
ATCAACTTATCCACTTCTTG+TGG | + | 51704:9423-9442 | MS.gene25678:intergenic | 35.0% | |
ATGCAAAAAGATAGTTCGTC+AGG | + | 51704:9794-9813 | MS.gene25678:intergenic | 35.0% | |
ATTCATTGGAAGGGAAAGAA+TGG | - | 51704:11091-11110 | MS.gene25678:CDS | 35.0% | |
ATTCTTTCCCTTCCAATGAA+TGG | + | 51704:11092-11111 | MS.gene25678:intergenic | 35.0% | |
CAAATCCAGCTAAAATGCAA+GGG | - | 51704:10125-10144 | MS.gene25678:intron | 35.0% | |
CATTCAACTGGGTTTAAGAA+TGG | - | 51704:7773-7792 | MS.gene25678:CDS | 35.0% | |
CCGTTTCATCATCAACAAAA+AGG | + | 51704:8190-8209 | MS.gene25678:intergenic | 35.0% | |
GATGTCACAAATTATGGAGT+TGG | - | 51704:8776-8795 | MS.gene25678:intron | 35.0% | |
GGAAAGTGATTCATTCAACT+GGG | - | 51704:7762-7781 | MS.gene25678:CDS | 35.0% | |
GGATTGTATAAGGAATGGAT+TGG | + | 51704:7373-7392 | MS.gene25678:intergenic | 35.0% | |
GTGAGACTATAAGGTGTATT+TGG | - | 51704:9509-9528 | MS.gene25678:intron | 35.0% | |
TAATGCATACATCTTCAGCT+AGG | - | 51704:9656-9675 | MS.gene25678:CDS | 35.0% | |
TACGGAGATGTCACAAATTA+TGG | - | 51704:8770-8789 | MS.gene25678:intron | 35.0% | |
TCAAATCCAGCTAAAATGCA+AGG | - | 51704:10124-10143 | MS.gene25678:intron | 35.0% | |
TCTCTTTCGAGGATTGTATA+AGG | + | 51704:7383-7402 | MS.gene25678:intergenic | 35.0% | |
TCTGAATCATTCTTCAAGTG+AGG | + | 51704:10457-10476 | MS.gene25678:intergenic | 35.0% | |
TGTATTGTGTTGGACTATCA+AGG | - | 51704:11116-11135 | MS.gene25678:CDS | 35.0% | |
TTCGAGGATTGTATAAGGAA+TGG | + | 51704:7378-7397 | MS.gene25678:intergenic | 35.0% | |
TTCTTTCCCTTCCAATGAAT+GGG | + | 51704:11091-11110 | MS.gene25678:intergenic | 35.0% | |
! | ATGTATGATGGAAAAGAAGG+TGG | + | 51704:7500-7519 | MS.gene25678:intergenic | 35.0% |
! | ATTGCACTTTTGGTGGAATT+TGG | + | 51704:9738-9757 | MS.gene25678:intergenic | 35.0% |
! | CCAAAAGTGCAATTCTGATA+AGG | - | 51704:9745-9764 | MS.gene25678:CDS | 35.0% |
! | CCTTATCAGAATTGCACTTT+TGG | + | 51704:9748-9767 | MS.gene25678:intergenic | 35.0% |
! | CCTTCAATTTCAGGTACAAA+AGG | + | 51704:7725-7744 | MS.gene25678:intergenic | 35.0% |
! | CCTTTTGTACCTGAAATTGA+AGG | - | 51704:7722-7741 | MS.gene25678:intron | 35.0% |
! | GAAGTATTTGTCAATGGAGA+TGG | - | 51704:8712-8731 | MS.gene25678:intron | 35.0% |
! | GACTCTATTATTTTCTGCAC+CGG | - | 51704:10707-10726 | MS.gene25678:CDS | 35.0% |
! | GATGAACATGTTCTTGTTGT+TGG | - | 51704:7809-7828 | MS.gene25678:CDS | 35.0% |
! | GATGGTGATGCTTAGTAAAA+TGG | - | 51704:8745-8764 | MS.gene25678:intron | 35.0% |
! | GGAATATGAAGGAAGGTTTT+TGG | - | 51704:7673-7692 | MS.gene25678:intron | 35.0% |
! | GGAATGTATGATGGAAAAGA+AGG | + | 51704:7503-7522 | MS.gene25678:intergenic | 35.0% |
! | GTTAGCTGTTGATTATACGT+AGG | - | 51704:8487-8506 | MS.gene25678:intron | 35.0% |
! | TATCAGAATTGCACTTTTGG+TGG | + | 51704:9745-9764 | MS.gene25678:intergenic | 35.0% |
! | TCACAAATTATGGAGTTGGT+AGG | - | 51704:8780-8799 | MS.gene25678:intron | 35.0% |
! | TGTATGATGGAAAAGAAGGT+GGG | + | 51704:7499-7518 | MS.gene25678:intergenic | 35.0% |
!! | AGACCAAATTGGTATTGGTA+TGG | - | 51704:9147-9166 | MS.gene25678:intron | 35.0% |
!! | ATAATTGGCATTGGTTGCTT+TGG | - | 51704:8910-8929 | MS.gene25678:intron | 35.0% |
!! | ATGATGAAGGTTCTGAGAAA+TGG | - | 51704:7612-7631 | MS.gene25678:intron | 35.0% |
!! | TTCTGGAATGGAAATTGCAT+TGG | - | 51704:7841-7860 | MS.gene25678:CDS | 35.0% |
!!! | GCTCGCAAAATTGTTTTTTG+AGG | + | 51704:7460-7479 | MS.gene25678:intergenic | 35.0% |
!!! | TGCATTTTAGCTGGATTTGA+TGG | + | 51704:10124-10143 | MS.gene25678:intergenic | 35.0% |
AAAGGGACATACACATATGC+TGG | + | 51704:9865-9884 | MS.gene25677:intergenic | 40.0% | |
AAAGTATATCTGAGGGTGAC+AGG | + | 51704:8594-8613 | MS.gene25677:intergenic | 40.0% | |
AAGTTACCCCATTCATTGGA+AGG | - | 51704:11081-11100 | MS.gene25678:CDS | 40.0% | |
AATATTCCCTTCACGGAAGA+TGG | - | 51704:8290-8309 | MS.gene25678:intron | 40.0% | |
AATCTTACCATCTTCCGTGA+AGG | + | 51704:8300-8319 | MS.gene25678:intergenic | 40.0% | |
AGAGTAATAGTTGTTGGAGC+AGG | - | 51704:7311-7330 | MS.gene25678:CDS | 40.0% | |
AGGTTGAGGAATATGAAGGA+AGG | - | 51704:7666-7685 | MS.gene25678:intron | 40.0% | |
AGTTACCCCATTCATTGGAA+GGG | - | 51704:11082-11101 | MS.gene25678:CDS | 40.0% | |
ATCTACCCACAAATGGCTTA+AGG | - | 51704:10739-10758 | MS.gene25678:CDS | 40.0% | |
ATCTTACCATCTTCCGTGAA+GGG | + | 51704:8299-8318 | MS.gene25678:intergenic | 40.0% | |
ATCTTCCGTGAAGGGAATAT+TGG | + | 51704:8291-8310 | MS.gene25678:intergenic | 40.0% | |
CAGCAACAACGGTAAAATGA+AGG | - | 51704:10870-10889 | MS.gene25678:CDS | 40.0% | |
CATAATATATGCAAGGTCCG+GGG | - | 51704:9176-9195 | MS.gene25678:intron | 40.0% | |
CCAAACCTTAAGCCATTTGT+GGG | + | 51704:10747-10766 | MS.gene25678:intergenic | 40.0% | |
CTATCAAGGAGAGGTTTCTA+TGG | - | 51704:11130-11149 | MS.gene25678:CDS | 40.0% | |
CTCTTCAACCCTTCAATTTC+AGG | + | 51704:7734-7753 | MS.gene25678:intergenic | 40.0% | |
GAAGGTGAAGGCTATGAATA+AGG | - | 51704:7634-7653 | MS.gene25678:intron | 40.0% | |
GAGAATGCAGAGTATGATGA+AGG | - | 51704:7599-7618 | MS.gene25678:intron | 40.0% | |
GCATTGGATCTTATCAACCA+TGG | - | 51704:7857-7876 | MS.gene25678:intron | 40.0% | |
GGGAAAGTGATTCATTCAAC+TGG | - | 51704:7761-7780 | MS.gene25678:CDS | 40.0% | |
GTATTTGTCAATGGAGATGG+TGG | - | 51704:8715-8734 | MS.gene25678:intron | 40.0% | |
GTGCAATTCTGATAAGGACA+TGG | - | 51704:9751-9770 | MS.gene25678:CDS | 40.0% | |
TATGAATAAGGATTCCGGTG+AGG | - | 51704:7646-7665 | MS.gene25678:intron | 40.0% | |
TCAAGAGATCTACCCACAAA+TGG | - | 51704:10732-10751 | MS.gene25678:CDS | 40.0% | |
TCAAGTGGCATGCTGAATTT+GGG | - | 51704:8677-8696 | MS.gene25678:intron | 40.0% | |
TCCAAACCTTAAGCCATTTG+TGG | + | 51704:10748-10767 | MS.gene25678:intergenic | 40.0% | |
TCTTCCGTGAAGGGAATATT+GGG | + | 51704:8290-8309 | MS.gene25678:intergenic | 40.0% | |
TCTTTCCCTTCCAATGAATG+GGG | + | 51704:11090-11109 | MS.gene25678:intergenic | 40.0% | |
TTCATATTCCTCAACCTCAC+CGG | + | 51704:7663-7682 | MS.gene25678:intergenic | 40.0% | |
TTCCAATGAATGGGGTAACT+TGG | + | 51704:11082-11101 | MS.gene25678:intergenic | 40.0% | |
! | AAGGGTTGAAGAGTTTTACC+GGG | - | 51704:7741-7760 | MS.gene25678:intron | 40.0% |
! | ACTTTTGGTGGAATTTGGAG+TGG | + | 51704:9733-9752 | MS.gene25678:intergenic | 40.0% |
! | ATCTTTCTTTTTGTGGTGGC+CGG | + | 51704:9210-9229 | MS.gene25678:intergenic | 40.0% |
! | CAGGTTCACATTTTGTCAAG+TGG | - | 51704:8662-8681 | MS.gene25678:intron | 40.0% |
! | GAAGGGTTGAAGAGTTTTAC+CGG | - | 51704:7740-7759 | MS.gene25678:intron | 40.0% |
! | TAAATGACGGGATGAATGAG+TGG | - | 51704:8425-8444 | MS.gene25678:intron | 40.0% |
! | TCAAGTGAGGTACTTTGCAA+GGG | + | 51704:10444-10463 | MS.gene25678:intergenic | 40.0% |
! | TTCAAGTGAGGTACTTTGCA+AGG | + | 51704:10445-10464 | MS.gene25678:intergenic | 40.0% |
! | TTCTGAGAAATGGAAGGTGA+AGG | - | 51704:7622-7641 | MS.gene25678:intron | 40.0% |
!! | CGATTGAAGTTTTAGCACCA+TGG | + | 51704:7877-7896 | MS.gene25678:intergenic | 40.0% |
!! | TGAAGGTTCTGAGAAATGGA+AGG | - | 51704:7616-7635 | MS.gene25678:intron | 40.0% |
!!! | TGAAGGAAGGTTTTTGGTTG+TGG | - | 51704:7679-7698 | MS.gene25678:intron | 40.0% |
AGCCAAGTTACCCCATTCAT+TGG | - | 51704:11077-11096 | MS.gene25678:CDS | 45.0% | |
ATATAAAAGGGACCCTCGCT+GGG | + | 51704:8806-8825 | MS.gene25678:intergenic | 45.0% | |
ATGAATGGGGTAACTTGGCT+TGG | + | 51704:11077-11096 | MS.gene25678:intergenic | 45.0% | |
CAAGTGGCATGCTGAATTTG+GGG | - | 51704:8678-8697 | MS.gene25678:intron | 45.0% | |
CCAGCTAAAATGCAAGGGTT+AGG | - | 51704:10130-10149 | MS.gene25678:intron | 45.0% | |
CCCACAAATGGCTTAAGGTT+TGG | - | 51704:10744-10763 | MS.gene25678:CDS | 45.0% | |
CTTCCCCAATATTCCCTTCA+CGG | - | 51704:8283-8302 | MS.gene25678:intron | 45.0% | |
CTTCCGTGAAGGGAATATTG+GGG | + | 51704:8289-8308 | MS.gene25678:intergenic | 45.0% | |
GATGGAAAAGAAGGTGGGAA+TGG | + | 51704:7494-7513 | MS.gene25678:intergenic | 45.0% | |
GGACGAAGTGTGAGACTATA+AGG | - | 51704:9500-9519 | MS.gene25678:intron | 45.0% | |
GGTGAGGTTGAGGAATATGA+AGG | - | 51704:7662-7681 | MS.gene25678:intron | 45.0% | |
GTCAAGTGGCATGCTGAATT+TGG | - | 51704:8676-8695 | MS.gene25678:intron | 45.0% | |
GTTGTTGGGTCTGGAAATTC+TGG | - | 51704:7824-7843 | MS.gene25678:CDS | 45.0% | |
GTTGTTGTGACGTGACGAAT+GGG | - | 51704:10589-10608 | MS.gene25678:intron | 45.0% | |
TCCACTGTTCTGTGATACAG+AGG | + | 51704:7581-7600 | MS.gene25678:intergenic | 45.0% | |
TCCTCTGTATCACAGAACAG+TGG | - | 51704:7577-7596 | MS.gene25678:intron | 45.0% | |
TCGGTATCTGACCTAACGAT+CGG | - | 51704:9977-9996 | MS.gene25678:intron | 45.0% | |
TCTTGGTTTAGCCGATCGTT+AGG | + | 51704:9991-10010 | MS.gene25678:intergenic | 45.0% | |
TGAATGGGGTAACTTGGCTT+GGG | + | 51704:11076-11095 | MS.gene25678:intergenic | 45.0% | |
TGTGTTGGACTATCAAGGAG+AGG | - | 51704:11121-11140 | MS.gene25678:CDS | 45.0% | |
TGTTGTTGTGACGTGACGAA+TGG | - | 51704:10588-10607 | MS.gene25678:intron | 45.0% | |
TTCAATCGTCGTTCGAAGCA+AGG | - | 51704:7889-7908 | MS.gene25678:intron | 45.0% | |
! | CAAGTGAGGTACTTTGCAAG+GGG | + | 51704:10443-10462 | MS.gene25678:intergenic | 45.0% |
! | CGAGGGTCCCTTTTATATGA+AGG | - | 51704:8808-8827 | MS.gene25678:intron | 45.0% |
! | TAAAACTGGCTCCAGAAGCA+GGG | - | 51704:9818-9837 | MS.gene25678:CDS | 45.0% |
! | TCTTTCTTTTTGTGGTGGCC+GGG | + | 51704:9209-9228 | MS.gene25678:intergenic | 45.0% |
! | TGGGTCTGGAAATTCTGGAA+TGG | - | 51704:7829-7848 | MS.gene25678:CDS | 45.0% |
! | TTAAAACTGGCTCCAGAAGC+AGG | - | 51704:9817-9836 | MS.gene25678:CDS | 45.0% |
! | TTCAGGGGCAGAGATTTTGA+AGG | + | 51704:10170-10189 | MS.gene25678:intergenic | 45.0% |
! | TTTGGTGGAATTTGGAGTGG+TGG | + | 51704:9730-9749 | MS.gene25678:intergenic | 45.0% |
!! | CATGTTCTTGTTGTTGGGTC+TGG | - | 51704:7815-7834 | MS.gene25678:CDS | 45.0% |
!! | CCTAACCCTTGCATTTTAGC+TGG | + | 51704:10133-10152 | MS.gene25678:intergenic | 45.0% |
!! | GGAGATGGTGGATTCAATGA+TGG | - | 51704:8727-8746 | MS.gene25678:intron | 45.0% |
!!! | AGGTTTTTGGTTGTGGCTAG+TGG | - | 51704:7686-7705 | MS.gene25678:intron | 45.0% |
!! | TTAAAAATAAAAAACTAATA+CGG | + | 51704:9954-9973 | MS.gene25678:intergenic | 5.0% |
!!! | TAATCTAATTAATTATTTTT+TGG | - | 51704:11014-11033 | MS.gene25678:CDS | 5.0% |
AGGAGAGGTTTCTATGGAGC+TGG | - | 51704:11136-11155 | MS.gene25678:CDS | 50.0% | |
AGGTTTCTATGGAGCTGGTG+CGG | - | 51704:11141-11160 | MS.gene25678:CDS | 50.0% | |
CATATAAAAGGGACCCTCGC+TGG | + | 51704:8807-8826 | MS.gene25678:intergenic | 50.0% | |
CTGCTACTGAGAGACCAGAA+GGG | + | 51704:7337-7356 | MS.gene25678:intergenic | 50.0% | |
GCTTCAGTCTCAAGATCCAC+AGG | - | 51704:9479-9498 | MS.gene25678:intron | 50.0% | |
GTGGGTAGATCTCTTGAAGC+CGG | + | 51704:10729-10748 | MS.gene25678:intergenic | 50.0% | |
TAAGGATTCCGGTGAGGTTG+AGG | - | 51704:7652-7671 | MS.gene25678:intron | 50.0% | |
TAGTCTCACACTTCGTCCTG+TGG | + | 51704:9498-9517 | MS.gene25678:intergenic | 50.0% | |
! | AAAACTGGCTCCAGAAGCAG+GGG | - | 51704:9819-9838 | MS.gene25678:CDS | 50.0% |
! | CTTTCTTTTTGTGGTGGCCG+GGG | + | 51704:9208-9227 | MS.gene25678:intergenic | 50.0% |
! | GAAGGTGGGAATGGTTTGTG+AGG | + | 51704:7485-7504 | MS.gene25678:intergenic | 50.0% |
GCTGCTACTGAGAGACCAGA+AGG | + | 51704:7338-7357 | MS.gene25678:intergenic | 55.0% | |
! | GGAATTTGGAGTGGTGGAGG+AGG | + | 51704:9724-9743 | MS.gene25678:intergenic | 55.0% |
! | GGTGGAATTTGGAGTGGTGG+AGG | + | 51704:9727-9746 | MS.gene25678:intergenic | 55.0% |
AAGGCCAATGCCCCTGCTTC+TGG | + | 51704:9832-9851 | MS.gene25678:intergenic | 60.0% | |
AAGGTCCGGGGTTCAAACCC+CGG | - | 51704:9188-9207 | MS.gene25678:intron | 60.0% | |
GTTGTTGGAGCAGGCCCTTC+TGG | - | 51704:7320-7339 | MS.gene25678:CDS | 60.0% | |
! | TGGAGTGGTGGAGGAGGAAG+TGG | + | 51704:9718-9737 | MS.gene25678:intergenic | 60.0% |
! | GGCTCCAGAAGCAGGGGCAT+TGG | - | 51704:9825-9844 | MS.gene25678:intron | 65.0% |
!! | GGAGTTGGTAGGCCCAGCGA+GGG | - | 51704:8791-8810 | MS.gene25678:intron | 65.0% |
!! | TGGAGTTGGTAGGCCCAGCG+AGG | - | 51704:8790-8809 | MS.gene25678:intron | 65.0% |
GGTGGCCGGGGTTTGAACCC+CGG | + | 51704:9196-9215 | MS.gene25678:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
51704 | gene | 7293 | 11213 | 7293 | ID=MS.gene25678 |
51704 | mRNA | 7293 | 11213 | 7293 | ID=MS.gene25678.t1;Parent=MS.gene25678 |
51704 | exon | 10596 | 11213 | 10596 | ID=MS.gene25678.t1.exon1;Parent=MS.gene25678.t1 |
51704 | CDS | 10596 | 11213 | 10596 | ID=cds.MS.gene25678.t1;Parent=MS.gene25678.t1 |
51704 | exon | 9608 | 9841 | 9608 | ID=MS.gene25678.t1.exon2;Parent=MS.gene25678.t1 |
51704 | CDS | 9608 | 9841 | 9608 | ID=cds.MS.gene25678.t1;Parent=MS.gene25678.t1 |
51704 | exon | 7746 | 7871 | 7746 | ID=MS.gene25678.t1.exon3;Parent=MS.gene25678.t1 |
51704 | CDS | 7746 | 7871 | 7746 | ID=cds.MS.gene25678.t1;Parent=MS.gene25678.t1 |
51704 | exon | 7293 | 7466 | 7293 | ID=MS.gene25678.t1.exon4;Parent=MS.gene25678.t1 |
51704 | CDS | 7293 | 7466 | 7293 | ID=cds.MS.gene25678.t1;Parent=MS.gene25678.t1 |
Gene Sequence |
Protein sequence |