AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene25678


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25678.t1 MTR_7g107690 95.039 383 19 0 1 383 1 383 0.0 759
MS.gene25678.t1 MTR_7g107710 67.647 374 119 2 8 380 6 378 0.0 536
MS.gene25678.t1 MTR_8g432640 48.936 376 189 1 8 383 6 378 6.17e-136 393
MS.gene25678.t1 MTR_5g033260 49.593 369 186 0 8 376 6 374 2.77e-134 389
MS.gene25678.t1 MTR_3g088925 49.051 369 188 0 8 376 7 375 9.79e-132 383
MS.gene25678.t1 MTR_3g088945 49.051 369 188 0 8 376 7 375 1.52e-131 382
MS.gene25678.t1 MTR_3g088955 48.238 369 191 0 8 376 7 375 7.53e-129 376
MS.gene25678.t1 MTR_4g051642 48.238 369 190 1 8 376 7 374 5.24e-126 369
MS.gene25678.t1 MTR_3g109520 45.910 379 199 2 9 382 40 417 2.63e-122 360
MS.gene25678.t1 MTR_6g086870 44.974 378 199 3 9 378 21 397 1.56e-119 352
MS.gene25678.t1 MTR_1g008380 46.649 373 192 3 9 376 43 413 8.16e-118 349
MS.gene25678.t1 MTR_1g069275 44.474 380 201 5 9 382 26 401 2.66e-117 347
MS.gene25678.t1 MTR_1g046230 44.267 375 200 4 9 376 25 397 2.09e-113 337
MS.gene25678.t1 MTR_7g099330 42.744 379 205 4 9 382 25 396 2.67e-113 337
MS.gene25678.t1 MTR_1g011630 42.895 380 206 4 9 383 17 390 8.40e-113 335
MS.gene25678.t1 MTR_7g099160 39.550 311 176 4 77 382 214 517 2.93e-76 245
MS.gene25678.t1 MTR_3g096030 39.227 181 86 1 4 184 2 158 4.05e-43 147
MS.gene25678.t1 MTR_1g041605 87.500 40 5 0 112 151 29 68 4.87e-18 78.2
MS.gene25678.t1 MTR_8g037910 25.106 235 142 5 7 214 3 230 5.26e-14 72.0
MS.gene25678.t1 MTR_8g037910 25.106 235 142 5 7 214 3 230 7.17e-14 72.4
MS.gene25678.t1 MTR_8g037910 25.106 235 142 5 7 214 3 230 1.43e-13 72.0
MS.gene25678.t1 MTR_8g037880 23.684 228 141 6 7 206 3 225 1.96e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25678.t1 AT1G48910 47.340 376 198 0 8 383 5 380 1.24e-137 398
MS.gene25678.t1 AT1G21430 45.333 375 200 4 8 380 9 380 1.09e-122 360
MS.gene25678.t1 AT1G04610 46.011 376 193 5 9 376 38 411 5.10e-120 355
MS.gene25678.t1 AT4G13260 44.772 373 200 2 9 376 29 400 1.67e-118 350
MS.gene25678.t1 AT5G25620 45.867 375 193 4 9 376 33 404 1.77e-116 345
MS.gene25678.t1 AT5G25620 45.867 375 193 4 9 376 33 404 3.10e-116 345
MS.gene25678.t1 AT5G43890 43.421 380 206 5 9 381 26 403 2.75e-114 340
MS.gene25678.t1 AT4G28720 43.307 381 206 6 9 381 26 404 3.84e-114 339
MS.gene25678.t1 AT1G04180 43.536 379 204 5 9 381 26 400 4.11e-113 337
MS.gene25678.t1 AT4G32540 43.733 375 198 5 9 376 22 390 8.37e-113 336
MS.gene25678.t1 AT4G32540 43.316 374 199 5 9 376 22 388 3.51e-112 334
MS.gene25678.t1 AT5G11320 44.772 373 193 4 9 376 18 382 1.23e-111 332
MS.gene25678.t1 AT2G33230 43.883 376 200 5 9 376 33 405 1.36e-106 320
MS.gene25678.t1 AT5G11320 45.201 323 165 3 9 326 18 333 3.60e-96 291
MS.gene25678.t1 AT4G13260 46.454 282 146 1 9 285 29 310 4.65e-93 281
MS.gene25678.t1 AT4G13260 40.339 295 169 3 87 376 5 297 2.30e-77 241
MS.gene25678.t1 AT1G62560 26.293 232 138 6 5 206 10 238 3.51e-15 77.0
MS.gene25678.t1 AT1G62560 26.638 229 135 6 8 206 13 238 4.17e-15 77.0
MS.gene25678.t1 AT1G65860 26.316 228 140 3 5 205 10 236 9.54e-15 75.9
MS.gene25678.t1 AT1G12160 24.457 368 172 12 8 342 12 306 9.49e-14 72.8
MS.gene25678.t1 AT1G12140 27.602 221 147 5 49 258 74 292 1.31e-13 72.4
MS.gene25678.t1 AT1G12140 27.602 221 147 5 49 258 74 292 1.31e-13 72.4
MS.gene25678.t1 AT1G19250 27.049 244 133 10 2 205 7 245 2.03e-13 72.0
MS.gene25678.t1 AT5G07800 26.336 262 144 7 2 226 10 259 5.76e-13 70.5
MS.gene25678.t1 AT5G61290 27.386 241 135 6 1 205 9 245 8.66e-13 69.7
MS.gene25678.t1 AT1G62620 22.511 231 143 4 8 205 13 240 8.92e-12 66.6
MS.gene25678.t1 AT1G62540 27.511 229 136 4 5 205 10 236 1.12e-11 66.6
MS.gene25678.t1 AT1G62620 22.709 251 155 5 8 222 13 260 1.15e-11 66.2
MS.gene25678.t1 AT1G62540 27.511 229 136 4 5 205 10 236 1.21e-11 66.2
MS.gene25678.t1 AT1G62540 27.511 229 136 4 5 205 10 236 1.22e-11 66.2
MS.gene25678.t1 AT1G12200 29.255 188 121 6 80 258 113 297 4.10e-11 64.3
MS.gene25678.t1 AT1G12200 29.255 188 121 6 80 258 113 297 5.93e-11 64.3

Find 0 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATTAAATCAAAATAATT+TGG - 51704:9596-9615 MS.gene25678:intron 10.0%
!! TAATATATTCAATATAGTAT+TGG + 51704:9315-9334 MS.gene25678:intergenic 10.0%
!! TAGAATAAATATATAAATGA+CGG - 51704:8412-8431 MS.gene25678:intron 10.0%
!!! AGTTTTTTATTTTTAAAACT+CGG - 51704:9958-9977 MS.gene25678:intron 10.0%
!!! TAATTAATTATTTTTTGGTA+GGG - 51704:11019-11038 MS.gene25678:CDS 10.0%
!! AAAACAAAACAAAAAACATT+TGG + 51704:7993-8012 MS.gene25678:intergenic 15.0%
!! AAAATAAAGGATTAAATTGA+TGG - 51704:9107-9126 MS.gene25678:intron 15.0%
!! AACAAATTTATTTAAGTGAA+AGG - 51704:10319-10338 MS.gene25678:intron 15.0%
!! AATAAACAATGTAATTAGAA+TGG - 51704:9554-9573 MS.gene25678:intron 15.0%
!! AGAATAAATATATAAATGAC+GGG - 51704:8413-8432 MS.gene25678:intron 15.0%
!! TAAAAATAGCGAAATTAAAA+AGG - 51704:9912-9931 MS.gene25678:intron 15.0%
!! TAATATATGTTACATGAAAA+TGG - 51704:10929-10948 MS.gene25678:CDS 15.0%
!! TTTGCATAAACAAATTTATT+AGG + 51704:10330-10311 MS.gene25678:intergenic 15.0%
!!! AATTAATTATTTTTTGGTAG+GGG - 51704:11020-11039 MS.gene25678:CDS 15.0%
!!! ACAAATATTTTGTTTTTCAA+AGG + 51704:9883-9902 MS.gene25678:intergenic 15.0%
!!! CAAATATTTTGTTTTTCAAA+GGG + 51704:9882-9901 MS.gene25678:intergenic 15.0%
!!! CATTGTTTATTATTTTAGAT+TGG + 51704:9545-9564 MS.gene25678:intergenic 15.0%
!!! CTAATTAATTATTTTTTGGT+AGG - 51704:11018-11037 MS.gene25678:CDS 15.0%
!!! TAACTTTTTTTTTGAAAGAA+AGG - 51704:10347-10366 MS.gene25678:intron 15.0%
!!! TATTGTAAAAACTTTTGTTT+AGG + 51704:7524-7543 MS.gene25678:intergenic 15.0%
!!! TTTATTATTTTAGATTGGTT+TGG + 51704:9540-9559 MS.gene25678:intergenic 15.0%
!! ACCTAAAATAACATTTAGAT+GGG - 51704:10281-10300 MS.gene25678:intron 20.0%
!! AGGTTATATAACTATAAACA+AGG - 51704:10367-10386 MS.gene25678:intron 20.0%
!! ATTAGTATAAAGTATATCTG+AGG + 51704:8602-8621 MS.gene25678:intergenic 20.0%
!! GATAATACATAATATATGCA+AGG - 51704:9169-9188 MS.gene25678:intron 20.0%
!! GATGAAATAATGATAACTTA+TGG + 51704:9004-9023 MS.gene25678:intergenic 20.0%
!! GTATTCAAGTACATAATTTA+AGG + 51704:9064-9083 MS.gene25678:intergenic 20.0%
!! TACCTAAAATAACATTTAGA+TGG - 51704:10280-10299 MS.gene25678:intron 20.0%
!! TCCATAAACAAGTAAAATAA+AGG - 51704:9094-9113 MS.gene25678:intron 20.0%
!! TTAGTATAAAGTATATCTGA+GGG + 51704:8601-8620 MS.gene25678:intergenic 20.0%
!!! ATGTCATTTTACTAAAAAGA+TGG - 51704:10394-10413 MS.gene25678:intron 20.0%
!!! ATTAATTATTTTTTGGTAGG+GGG - 51704:11021-11040 MS.gene25678:CDS 20.0%
!!! CTAAATGTTATTTTAGGTAT+TGG + 51704:10279-10298 MS.gene25678:intergenic 20.0%
!!! CTTTTTGCATTTTTTAAAAC+TGG - 51704:9804-9823 MS.gene25678:CDS 20.0%
!!! TCCTTTATTTTACTTGTTTA+TGG + 51704:9098-9117 MS.gene25678:intergenic 20.0%
! AAAACTCTATATCAGACTAT+AGG - 51704:8149-8168 MS.gene25678:intron 25.0%
! AACATACGTCAAAGTATATA+TGG + 51704:10982-11001 MS.gene25678:intergenic 25.0%
! AATGAAAGAGTAATAGTTGT+TGG - 51704:7305-7324 MS.gene25678:CDS 25.0%
! AATTAAGTCTCAAGAGTTAA+AGG - 51704:8877-8896 MS.gene25678:intron 25.0%
! ACCTCTTAAAAGAAATTAAG+AGG - 51704:9283-9302 MS.gene25678:intron 25.0%
! ATATATACTTTGACGTATGT+TGG - 51704:10981-11000 MS.gene25678:CDS 25.0%
! ATGCTTAGTAAAATGGTTTA+CGG - 51704:8752-8771 MS.gene25678:intron 25.0%
! CAATAGTTTAAAGACCAAAT+TGG - 51704:9136-9155 MS.gene25678:intron 25.0%
! CACTCTTAAAAGAAATTAAG+TGG - 51704:10195-10214 MS.gene25678:intron 25.0%
! CCTAAAATAACATTTAGATG+GGG - 51704:10282-10301 MS.gene25678:intron 25.0%
! GATTACAAATACAGATTTGT+AGG + 51704:8112-8131 MS.gene25678:intergenic 25.0%
! TACTTGACCTTCATATAAAA+GGG + 51704:8818-8837 MS.gene25678:intergenic 25.0%
! TGTACTTGAATACATCAATT+TGG - 51704:9071-9090 MS.gene25678:intron 25.0%
! TGTGATTGATTATGTAACTT+TGG - 51704:8530-8549 MS.gene25678:intron 25.0%
! TTTAAAGACCAAATTGGTAT+TGG - 51704:9142-9161 MS.gene25678:intron 25.0%
!! AACCATATTAGGCAAATTTT+AGG + 51704:8965-8984 MS.gene25678:intergenic 25.0%
!! AAGAATGTCCTTTTCAAAAA+TGG - 51704:10668-10687 MS.gene25678:CDS 25.0%
!! ACCTCTTAATTTCTTTTAAG+AGG + 51704:9287-9306 MS.gene25678:intergenic 25.0%
!! AGATTTTGTATAGAATTGCA+CGG - 51704:8315-8334 MS.gene25678:intron 25.0%
!! CAATTTGATCTTTCTTTTTG+TGG + 51704:9217-9236 MS.gene25678:intergenic 25.0%
!! TGTTAGTTTCAAGACTAAAT+TGG - 51704:9246-9265 MS.gene25678:intron 25.0%
!! TTTTATATGAAGGTCAAGTA+CGG - 51704:8818-8837 MS.gene25678:intron 25.0%
!!! AAAATTGTTTTGCTTCACTA+TGG - 51704:7402-7421 MS.gene25678:CDS 25.0%
!!! ATTGTGTTGTATGTTACTTT+AGG - 51704:10613-10632 MS.gene25678:CDS 25.0%
!!! CAACAAAAAGGTTTTTTACT+CGG + 51704:8178-8197 MS.gene25678:intergenic 25.0%
!!! TTTTAAGAGTGTTAGTTTCA+GGG + 51704:10186-10205 MS.gene25678:intergenic 25.0%
!!! TTTTGTTTAGGAATGTATGA+TGG + 51704:7512-7531 MS.gene25678:intergenic 25.0%
AAAATTATAGACAGAGCACA+TGG + 51704:8063-8082 MS.gene25677:intergenic 30.0%
AAGTATCCTATTATTGACGT+TGG - 51704:8842-8861 MS.gene25678:intron 30.0%
AAGTTGACTAAAACAACTCT+TGG + 51704:10008-10027 MS.gene25678:intergenic 30.0%
AGAATTGCACGGATATATAT+GGG - 51704:8326-8345 MS.gene25678:intron 30.0%
AGCTTGTACATTAAATCTTG+AGG + 51704:9453-9472 MS.gene25678:intergenic 30.0%
ATATGCTGGAGAAGAATTTA+AGG + 51704:9851-9870 MS.gene25678:intergenic 30.0%
ATATTGAAATCCACAAGAAG+TGG - 51704:9410-9429 MS.gene25678:intron 30.0%
ATTCAACTGGGTTTAAGAAT+GGG - 51704:7774-7793 MS.gene25678:CDS 30.0%
CACCTAAAATTTGCCTAATA+TGG - 51704:8960-8979 MS.gene25678:intron 30.0%
GAATACCATCATCATTCAAA+AGG + 51704:11054-11073 MS.gene25678:intergenic 30.0%
GTACTTGACCTTCATATAAA+AGG + 51704:8819-8838 MS.gene25678:intergenic 30.0%
GTAGAAATAGAATGCATAAG+TGG - 51704:10644-10663 MS.gene25678:CDS 30.0%
TACATAATATATGCAAGGTC+CGG - 51704:9174-9193 MS.gene25678:intron 30.0%
TAGAATTGCACGGATATATA+TGG - 51704:8325-8344 MS.gene25678:intron 30.0%
TATCCATACCAATACCAATT+TGG + 51704:9153-9172 MS.gene25678:intergenic 30.0%
TGAGACTATAAGGTGTATTT+GGG - 51704:9510-9529 MS.gene25678:intron 30.0%
TGTAGAAACCAAAAGAAATG+TGG - 51704:10956-10975 MS.gene25678:CDS 30.0%
TGTTTGCATATTCTACTAAG+AGG + 51704:9347-9366 MS.gene25678:intergenic 30.0%
TTGTACATTAAATCTTGAGG+AGG + 51704:9450-9469 MS.gene25678:intergenic 30.0%
TTTGATGTGTGCATCTTAAA+AGG + 51704:8016-8035 MS.gene25678:intergenic 30.0%
! AAAGGTACGTTAGCAATAAT+TGG - 51704:8895-8914 MS.gene25678:intron 30.0%
! AAGAATGGTTTGTATTGTGT+TGG - 51704:11106-11125 MS.gene25678:CDS 30.0%
! ATATATGGCCACATTTCTTT+TGG + 51704:10967-10986 MS.gene25678:intergenic 30.0%
! ATTGACTTCGAAACCATATT+AGG + 51704:8976-8995 MS.gene25678:intergenic 30.0%
! CAAAACAATTTTCTCTTTCG+AGG + 51704:7394-7413 MS.gene25678:intergenic 30.0%
! CTTCAATTTCAGGTACAAAA+GGG + 51704:7724-7743 MS.gene25678:intergenic 30.0%
! CTTTTGTACCTGAAATTGAA+GGG - 51704:7723-7742 MS.gene25678:intron 30.0%
! GATTACCTTTTGAATGATGA+TGG - 51704:11046-11065 MS.gene25678:CDS 30.0%
! TCTGATGAAGTATTTGTCAA+TGG - 51704:8706-8725 MS.gene25678:intron 30.0%
! TTGAGACTTAATTTTGCGAA+AGG + 51704:8870-8889 MS.gene25678:intergenic 30.0%
! TTTGATCTTTCTTTTTGTGG+TGG + 51704:9214-9233 MS.gene25678:intergenic 30.0%
!! AAGAAGTGGATAAGTTGATT+TGG - 51704:9424-9443 MS.gene25678:intron 30.0%
!! ATGAACATGTTCTTGTTGTT+GGG - 51704:7810-7829 MS.gene25678:CDS 30.0%
!! CTTATGCATTCTATTTCTAC+CGG + 51704:10644-10663 MS.gene25678:intergenic 30.0%
!! GCAATTGACCATTTTTGAAA+AGG + 51704:10679-10698 MS.gene25678:intergenic 30.0%
!! GGTATTGGTTATGTAACTAT+TGG + 51704:10264-10283 MS.gene25678:intergenic 30.0%
!! TTTAAGAGTGTTAGTTTCAG+GGG + 51704:10185-10204 MS.gene25678:intergenic 30.0%
!!! CCCCATCTAAATGTTATTTT+AGG + 51704:10285-10304 MS.gene25678:intergenic 30.0%
!!! CCTTTTTGTTGATGATGAAA+CGG - 51704:8187-8206 MS.gene25678:intron 30.0%
!!! CTTTTAAGAGTGTTAGTTTC+AGG + 51704:10187-10206 MS.gene25678:intergenic 30.0%
!!! CTTTTTGTTGATGATGAAAC+GGG - 51704:8188-8207 MS.gene25678:intron 30.0%
!!! TATGTTACTTTAGGTTTTGC+CGG - 51704:10622-10641 MS.gene25678:CDS 30.0%
AACATCAACAACAGCAACAA+CGG - 51704:10859-10878 MS.gene25678:CDS 35.0%
AAGGCTATGAATAAGGATTC+CGG - 51704:7641-7660 MS.gene25678:intron 35.0%
AAGGTTCCAACGTCAATAAT+AGG + 51704:8851-8870 MS.gene25678:intergenic 35.0%
ACATAATATATGCAAGGTCC+GGG - 51704:9175-9194 MS.gene25678:intron 35.0%
ACGAATACAATGTAATGTGC+AGG - 51704:8643-8662 MS.gene25678:intron 35.0%
ACGTTAGCAATAATTGGCAT+TGG - 51704:8901-8920 MS.gene25678:intron 35.0%
AGTTGAATGAATCACTTTCC+CGG + 51704:7762-7781 MS.gene25678:intergenic 35.0%
ATCAACTTATCCACTTCTTG+TGG + 51704:9423-9442 MS.gene25678:intergenic 35.0%
ATGCAAAAAGATAGTTCGTC+AGG + 51704:9794-9813 MS.gene25678:intergenic 35.0%
ATTCATTGGAAGGGAAAGAA+TGG - 51704:11091-11110 MS.gene25678:CDS 35.0%
ATTCTTTCCCTTCCAATGAA+TGG + 51704:11092-11111 MS.gene25678:intergenic 35.0%
CAAATCCAGCTAAAATGCAA+GGG - 51704:10125-10144 MS.gene25678:intron 35.0%
CATTCAACTGGGTTTAAGAA+TGG - 51704:7773-7792 MS.gene25678:CDS 35.0%
CCGTTTCATCATCAACAAAA+AGG + 51704:8190-8209 MS.gene25678:intergenic 35.0%
GATGTCACAAATTATGGAGT+TGG - 51704:8776-8795 MS.gene25678:intron 35.0%
GGAAAGTGATTCATTCAACT+GGG - 51704:7762-7781 MS.gene25678:CDS 35.0%
GGATTGTATAAGGAATGGAT+TGG + 51704:7373-7392 MS.gene25678:intergenic 35.0%
GTGAGACTATAAGGTGTATT+TGG - 51704:9509-9528 MS.gene25678:intron 35.0%
TAATGCATACATCTTCAGCT+AGG - 51704:9656-9675 MS.gene25678:CDS 35.0%
TACGGAGATGTCACAAATTA+TGG - 51704:8770-8789 MS.gene25678:intron 35.0%
TCAAATCCAGCTAAAATGCA+AGG - 51704:10124-10143 MS.gene25678:intron 35.0%
TCTCTTTCGAGGATTGTATA+AGG + 51704:7383-7402 MS.gene25678:intergenic 35.0%
TCTGAATCATTCTTCAAGTG+AGG + 51704:10457-10476 MS.gene25678:intergenic 35.0%
TGTATTGTGTTGGACTATCA+AGG - 51704:11116-11135 MS.gene25678:CDS 35.0%
TTCGAGGATTGTATAAGGAA+TGG + 51704:7378-7397 MS.gene25678:intergenic 35.0%
TTCTTTCCCTTCCAATGAAT+GGG + 51704:11091-11110 MS.gene25678:intergenic 35.0%
! ATGTATGATGGAAAAGAAGG+TGG + 51704:7500-7519 MS.gene25678:intergenic 35.0%
! ATTGCACTTTTGGTGGAATT+TGG + 51704:9738-9757 MS.gene25678:intergenic 35.0%
! CCAAAAGTGCAATTCTGATA+AGG - 51704:9745-9764 MS.gene25678:CDS 35.0%
! CCTTATCAGAATTGCACTTT+TGG + 51704:9748-9767 MS.gene25678:intergenic 35.0%
! CCTTCAATTTCAGGTACAAA+AGG + 51704:7725-7744 MS.gene25678:intergenic 35.0%
! CCTTTTGTACCTGAAATTGA+AGG - 51704:7722-7741 MS.gene25678:intron 35.0%
! GAAGTATTTGTCAATGGAGA+TGG - 51704:8712-8731 MS.gene25678:intron 35.0%
! GACTCTATTATTTTCTGCAC+CGG - 51704:10707-10726 MS.gene25678:CDS 35.0%
! GATGAACATGTTCTTGTTGT+TGG - 51704:7809-7828 MS.gene25678:CDS 35.0%
! GATGGTGATGCTTAGTAAAA+TGG - 51704:8745-8764 MS.gene25678:intron 35.0%
! GGAATATGAAGGAAGGTTTT+TGG - 51704:7673-7692 MS.gene25678:intron 35.0%
! GGAATGTATGATGGAAAAGA+AGG + 51704:7503-7522 MS.gene25678:intergenic 35.0%
! GTTAGCTGTTGATTATACGT+AGG - 51704:8487-8506 MS.gene25678:intron 35.0%
! TATCAGAATTGCACTTTTGG+TGG + 51704:9745-9764 MS.gene25678:intergenic 35.0%
! TCACAAATTATGGAGTTGGT+AGG - 51704:8780-8799 MS.gene25678:intron 35.0%
! TGTATGATGGAAAAGAAGGT+GGG + 51704:7499-7518 MS.gene25678:intergenic 35.0%
!! AGACCAAATTGGTATTGGTA+TGG - 51704:9147-9166 MS.gene25678:intron 35.0%
!! ATAATTGGCATTGGTTGCTT+TGG - 51704:8910-8929 MS.gene25678:intron 35.0%
!! ATGATGAAGGTTCTGAGAAA+TGG - 51704:7612-7631 MS.gene25678:intron 35.0%
!! TTCTGGAATGGAAATTGCAT+TGG - 51704:7841-7860 MS.gene25678:CDS 35.0%
!!! GCTCGCAAAATTGTTTTTTG+AGG + 51704:7460-7479 MS.gene25678:intergenic 35.0%
!!! TGCATTTTAGCTGGATTTGA+TGG + 51704:10124-10143 MS.gene25678:intergenic 35.0%
AAAGGGACATACACATATGC+TGG + 51704:9865-9884 MS.gene25677:intergenic 40.0%
AAAGTATATCTGAGGGTGAC+AGG + 51704:8594-8613 MS.gene25677:intergenic 40.0%
AAGTTACCCCATTCATTGGA+AGG - 51704:11081-11100 MS.gene25678:CDS 40.0%
AATATTCCCTTCACGGAAGA+TGG - 51704:8290-8309 MS.gene25678:intron 40.0%
AATCTTACCATCTTCCGTGA+AGG + 51704:8300-8319 MS.gene25678:intergenic 40.0%
AGAGTAATAGTTGTTGGAGC+AGG - 51704:7311-7330 MS.gene25678:CDS 40.0%
AGGTTGAGGAATATGAAGGA+AGG - 51704:7666-7685 MS.gene25678:intron 40.0%
AGTTACCCCATTCATTGGAA+GGG - 51704:11082-11101 MS.gene25678:CDS 40.0%
ATCTACCCACAAATGGCTTA+AGG - 51704:10739-10758 MS.gene25678:CDS 40.0%
ATCTTACCATCTTCCGTGAA+GGG + 51704:8299-8318 MS.gene25678:intergenic 40.0%
ATCTTCCGTGAAGGGAATAT+TGG + 51704:8291-8310 MS.gene25678:intergenic 40.0%
CAGCAACAACGGTAAAATGA+AGG - 51704:10870-10889 MS.gene25678:CDS 40.0%
CATAATATATGCAAGGTCCG+GGG - 51704:9176-9195 MS.gene25678:intron 40.0%
CCAAACCTTAAGCCATTTGT+GGG + 51704:10747-10766 MS.gene25678:intergenic 40.0%
CTATCAAGGAGAGGTTTCTA+TGG - 51704:11130-11149 MS.gene25678:CDS 40.0%
CTCTTCAACCCTTCAATTTC+AGG + 51704:7734-7753 MS.gene25678:intergenic 40.0%
GAAGGTGAAGGCTATGAATA+AGG - 51704:7634-7653 MS.gene25678:intron 40.0%
GAGAATGCAGAGTATGATGA+AGG - 51704:7599-7618 MS.gene25678:intron 40.0%
GCATTGGATCTTATCAACCA+TGG - 51704:7857-7876 MS.gene25678:intron 40.0%
GGGAAAGTGATTCATTCAAC+TGG - 51704:7761-7780 MS.gene25678:CDS 40.0%
GTATTTGTCAATGGAGATGG+TGG - 51704:8715-8734 MS.gene25678:intron 40.0%
GTGCAATTCTGATAAGGACA+TGG - 51704:9751-9770 MS.gene25678:CDS 40.0%
TATGAATAAGGATTCCGGTG+AGG - 51704:7646-7665 MS.gene25678:intron 40.0%
TCAAGAGATCTACCCACAAA+TGG - 51704:10732-10751 MS.gene25678:CDS 40.0%
TCAAGTGGCATGCTGAATTT+GGG - 51704:8677-8696 MS.gene25678:intron 40.0%
TCCAAACCTTAAGCCATTTG+TGG + 51704:10748-10767 MS.gene25678:intergenic 40.0%
TCTTCCGTGAAGGGAATATT+GGG + 51704:8290-8309 MS.gene25678:intergenic 40.0%
TCTTTCCCTTCCAATGAATG+GGG + 51704:11090-11109 MS.gene25678:intergenic 40.0%
TTCATATTCCTCAACCTCAC+CGG + 51704:7663-7682 MS.gene25678:intergenic 40.0%
TTCCAATGAATGGGGTAACT+TGG + 51704:11082-11101 MS.gene25678:intergenic 40.0%
! AAGGGTTGAAGAGTTTTACC+GGG - 51704:7741-7760 MS.gene25678:intron 40.0%
! ACTTTTGGTGGAATTTGGAG+TGG + 51704:9733-9752 MS.gene25678:intergenic 40.0%
! ATCTTTCTTTTTGTGGTGGC+CGG + 51704:9210-9229 MS.gene25678:intergenic 40.0%
! CAGGTTCACATTTTGTCAAG+TGG - 51704:8662-8681 MS.gene25678:intron 40.0%
! GAAGGGTTGAAGAGTTTTAC+CGG - 51704:7740-7759 MS.gene25678:intron 40.0%
! TAAATGACGGGATGAATGAG+TGG - 51704:8425-8444 MS.gene25678:intron 40.0%
! TCAAGTGAGGTACTTTGCAA+GGG + 51704:10444-10463 MS.gene25678:intergenic 40.0%
! TTCAAGTGAGGTACTTTGCA+AGG + 51704:10445-10464 MS.gene25678:intergenic 40.0%
! TTCTGAGAAATGGAAGGTGA+AGG - 51704:7622-7641 MS.gene25678:intron 40.0%
!! CGATTGAAGTTTTAGCACCA+TGG + 51704:7877-7896 MS.gene25678:intergenic 40.0%
!! TGAAGGTTCTGAGAAATGGA+AGG - 51704:7616-7635 MS.gene25678:intron 40.0%
!!! TGAAGGAAGGTTTTTGGTTG+TGG - 51704:7679-7698 MS.gene25678:intron 40.0%
AGCCAAGTTACCCCATTCAT+TGG - 51704:11077-11096 MS.gene25678:CDS 45.0%
ATATAAAAGGGACCCTCGCT+GGG + 51704:8806-8825 MS.gene25678:intergenic 45.0%
ATGAATGGGGTAACTTGGCT+TGG + 51704:11077-11096 MS.gene25678:intergenic 45.0%
CAAGTGGCATGCTGAATTTG+GGG - 51704:8678-8697 MS.gene25678:intron 45.0%
CCAGCTAAAATGCAAGGGTT+AGG - 51704:10130-10149 MS.gene25678:intron 45.0%
CCCACAAATGGCTTAAGGTT+TGG - 51704:10744-10763 MS.gene25678:CDS 45.0%
CTTCCCCAATATTCCCTTCA+CGG - 51704:8283-8302 MS.gene25678:intron 45.0%
CTTCCGTGAAGGGAATATTG+GGG + 51704:8289-8308 MS.gene25678:intergenic 45.0%
GATGGAAAAGAAGGTGGGAA+TGG + 51704:7494-7513 MS.gene25678:intergenic 45.0%
GGACGAAGTGTGAGACTATA+AGG - 51704:9500-9519 MS.gene25678:intron 45.0%
GGTGAGGTTGAGGAATATGA+AGG - 51704:7662-7681 MS.gene25678:intron 45.0%
GTCAAGTGGCATGCTGAATT+TGG - 51704:8676-8695 MS.gene25678:intron 45.0%
GTTGTTGGGTCTGGAAATTC+TGG - 51704:7824-7843 MS.gene25678:CDS 45.0%
GTTGTTGTGACGTGACGAAT+GGG - 51704:10589-10608 MS.gene25678:intron 45.0%
TCCACTGTTCTGTGATACAG+AGG + 51704:7581-7600 MS.gene25678:intergenic 45.0%
TCCTCTGTATCACAGAACAG+TGG - 51704:7577-7596 MS.gene25678:intron 45.0%
TCGGTATCTGACCTAACGAT+CGG - 51704:9977-9996 MS.gene25678:intron 45.0%
TCTTGGTTTAGCCGATCGTT+AGG + 51704:9991-10010 MS.gene25678:intergenic 45.0%
TGAATGGGGTAACTTGGCTT+GGG + 51704:11076-11095 MS.gene25678:intergenic 45.0%
TGTGTTGGACTATCAAGGAG+AGG - 51704:11121-11140 MS.gene25678:CDS 45.0%
TGTTGTTGTGACGTGACGAA+TGG - 51704:10588-10607 MS.gene25678:intron 45.0%
TTCAATCGTCGTTCGAAGCA+AGG - 51704:7889-7908 MS.gene25678:intron 45.0%
! CAAGTGAGGTACTTTGCAAG+GGG + 51704:10443-10462 MS.gene25678:intergenic 45.0%
! CGAGGGTCCCTTTTATATGA+AGG - 51704:8808-8827 MS.gene25678:intron 45.0%
! TAAAACTGGCTCCAGAAGCA+GGG - 51704:9818-9837 MS.gene25678:CDS 45.0%
! TCTTTCTTTTTGTGGTGGCC+GGG + 51704:9209-9228 MS.gene25678:intergenic 45.0%
! TGGGTCTGGAAATTCTGGAA+TGG - 51704:7829-7848 MS.gene25678:CDS 45.0%
! TTAAAACTGGCTCCAGAAGC+AGG - 51704:9817-9836 MS.gene25678:CDS 45.0%
! TTCAGGGGCAGAGATTTTGA+AGG + 51704:10170-10189 MS.gene25678:intergenic 45.0%
! TTTGGTGGAATTTGGAGTGG+TGG + 51704:9730-9749 MS.gene25678:intergenic 45.0%
!! CATGTTCTTGTTGTTGGGTC+TGG - 51704:7815-7834 MS.gene25678:CDS 45.0%
!! CCTAACCCTTGCATTTTAGC+TGG + 51704:10133-10152 MS.gene25678:intergenic 45.0%
!! GGAGATGGTGGATTCAATGA+TGG - 51704:8727-8746 MS.gene25678:intron 45.0%
!!! AGGTTTTTGGTTGTGGCTAG+TGG - 51704:7686-7705 MS.gene25678:intron 45.0%
!! TTAAAAATAAAAAACTAATA+CGG + 51704:9954-9973 MS.gene25678:intergenic 5.0%
!!! TAATCTAATTAATTATTTTT+TGG - 51704:11014-11033 MS.gene25678:CDS 5.0%
AGGAGAGGTTTCTATGGAGC+TGG - 51704:11136-11155 MS.gene25678:CDS 50.0%
AGGTTTCTATGGAGCTGGTG+CGG - 51704:11141-11160 MS.gene25678:CDS 50.0%
CATATAAAAGGGACCCTCGC+TGG + 51704:8807-8826 MS.gene25678:intergenic 50.0%
CTGCTACTGAGAGACCAGAA+GGG + 51704:7337-7356 MS.gene25678:intergenic 50.0%
GCTTCAGTCTCAAGATCCAC+AGG - 51704:9479-9498 MS.gene25678:intron 50.0%
GTGGGTAGATCTCTTGAAGC+CGG + 51704:10729-10748 MS.gene25678:intergenic 50.0%
TAAGGATTCCGGTGAGGTTG+AGG - 51704:7652-7671 MS.gene25678:intron 50.0%
TAGTCTCACACTTCGTCCTG+TGG + 51704:9498-9517 MS.gene25678:intergenic 50.0%
! AAAACTGGCTCCAGAAGCAG+GGG - 51704:9819-9838 MS.gene25678:CDS 50.0%
! CTTTCTTTTTGTGGTGGCCG+GGG + 51704:9208-9227 MS.gene25678:intergenic 50.0%
! GAAGGTGGGAATGGTTTGTG+AGG + 51704:7485-7504 MS.gene25678:intergenic 50.0%
GCTGCTACTGAGAGACCAGA+AGG + 51704:7338-7357 MS.gene25678:intergenic 55.0%
! GGAATTTGGAGTGGTGGAGG+AGG + 51704:9724-9743 MS.gene25678:intergenic 55.0%
! GGTGGAATTTGGAGTGGTGG+AGG + 51704:9727-9746 MS.gene25678:intergenic 55.0%
AAGGCCAATGCCCCTGCTTC+TGG + 51704:9832-9851 MS.gene25678:intergenic 60.0%
AAGGTCCGGGGTTCAAACCC+CGG - 51704:9188-9207 MS.gene25678:intron 60.0%
GTTGTTGGAGCAGGCCCTTC+TGG - 51704:7320-7339 MS.gene25678:CDS 60.0%
! TGGAGTGGTGGAGGAGGAAG+TGG + 51704:9718-9737 MS.gene25678:intergenic 60.0%
! GGCTCCAGAAGCAGGGGCAT+TGG - 51704:9825-9844 MS.gene25678:intron 65.0%
!! GGAGTTGGTAGGCCCAGCGA+GGG - 51704:8791-8810 MS.gene25678:intron 65.0%
!! TGGAGTTGGTAGGCCCAGCG+AGG - 51704:8790-8809 MS.gene25678:intron 65.0%
GGTGGCCGGGGTTTGAACCC+CGG + 51704:9196-9215 MS.gene25678:intergenic 70.0%


Chromosome Type Strat End Strand Name
51704 gene 7293 11213 7293 ID=MS.gene25678
51704 mRNA 7293 11213 7293 ID=MS.gene25678.t1;Parent=MS.gene25678
51704 exon 10596 11213 10596 ID=MS.gene25678.t1.exon1;Parent=MS.gene25678.t1
51704 CDS 10596 11213 10596 ID=cds.MS.gene25678.t1;Parent=MS.gene25678.t1
51704 exon 9608 9841 9608 ID=MS.gene25678.t1.exon2;Parent=MS.gene25678.t1
51704 CDS 9608 9841 9608 ID=cds.MS.gene25678.t1;Parent=MS.gene25678.t1
51704 exon 7746 7871 7746 ID=MS.gene25678.t1.exon3;Parent=MS.gene25678.t1
51704 CDS 7746 7871 7746 ID=cds.MS.gene25678.t1;Parent=MS.gene25678.t1
51704 exon 7293 7466 7293 ID=MS.gene25678.t1.exon4;Parent=MS.gene25678.t1
51704 CDS 7293 7466 7293 ID=cds.MS.gene25678.t1;Parent=MS.gene25678.t1
Gene Sequence

>MS.gene25678

ATGAAGAAAGAGAATGAAAGAGTAATAGTTGTTGGAGCAGGCCCTTCTGGTCTCTCAGTAGCAGCAAGCTTAACAAACCAATCCATTCCTTATACAATCCTCGAAAGAGAAAATTGTTTTGCTTCACTATGGAAAAAATATTCATATGATCGTCTTCATCTTCACCTCAAAAAACAATTTTGCGAGCTTCCTCACAAACCATTCCCACCTTCTTTTCCATCATACATTCCTAAACAAAAGTTTTTACAATACTTAGAAGACTATGTTGCTCACTTCAAAATCAATCCTCTGTATCACAGAACAGTGGAGAATGCAGAGTATGATGAAGGTTCTGAGAAATGGAAGGTGAAGGCTATGAATAAGGATTCCGGTGAGGTTGAGGAATATGAAGGAAGGTTTTTGGTTGTGGCTAGTGGTGAAACTAGTGACCCTTTTGTACCTGAAATTGAAGGGTTGAAGAGTTTTACCGGGAAAGTGATTCATTCAACTGGGTTTAAGAATGGGAAAGAATTTAAAGATGAACATGTTCTTGTTGTTGGGTCTGGAAATTCTGGAATGGAAATTGCATTGGATCTTATCAACCATGGTGCTAAAACTTCAATCGTCGTTCGAAGCAAGGTAATTGTTATTTTCAACTTCTATTTGATTTCACTCACAAATGAAATCAAAATATGTTCTGTTATTTAACTTATGCATGCCAAATGTTTTTTGTTTTGTTTTCCTTTTAAGATGCACACATCAAATTTAAAATTTATAGATTTTTTGTACCATGTGCTCTGTCTATAATTTTAATTTAGTTATCTCATCAAATTTATACCTACAAATCTGTATTTGTAATCTATTGTAACAACAAAAAAAAACTCTATATCAGACTATAGGCTACCGAGTAAAAAACCTTTTTGTTGATGATGAAACGGGTAAAAAGTTTTACTCGTTACTAATTCAATTGTATTTGATTATACTCAAATATTTCTTGAGACATTTTATTTGCTTCCCCAATATTCCCTTCACGGAAGATGGTAAGATTTTGTATAGAATTGCACGGATATATATGGGATAAAAACAGAAAAAAATTATATATTTAAAATTGTAACACGTATAGTTAGCACAAATTTTTTTTAGAATAAATATATAAATGACGGGATGAATGAGTGGTCTTTGAACTTTTTATAATTATTAACTTTTTTGTTCTTTGTTAGCTGTTGATTATACGTAGGTGTGAAGAAAATTATATGATTGTGATTGATTATGTAACTTTGGTTAAACTATTGCTTAAAAGAGTACTATTAATTAGTTTGCCTGTCACCCTCAGATATACTTTATACTAATAAATAATATAAAGTGCATACAACGAATACAATGTAATGTGCAGGTTCACATTTTGTCAAGTGGCATGCTGAATTTGGGGTTGTTTCTGATGAAGTATTTGTCAATGGAGATGGTGGATTCAATGATGGTGATGCTTAGTAAAATGGTTTACGGAGATGTCACAAATTATGGAGTTGGTAGGCCCAGCGAGGGTCCCTTTTATATGAAGGTCAAGTACGGCAAGTATCCTATTATTGACGTTGGAACCTTTCGCAAAATTAAGTCTCAAGAGTTAAAGGTACGTTAGCAATAATTGGCATTGGTTGCTTTGGTGTAACTTGAAAGTTCAAACTTTCAATCACCTAAAATTTGCCTAATATGGTTTCGAAGTCAATTTAGTCCATAAGTTATCATTATTTCATCAATTTAGTCTCTAAGCTATTAAAATCAACTAAAAATTCCTTAAATTATGTACTTGAATACATCAATTTGGTCCATAAACAAGTAAAATAAAGGATTAAATTGATGGATGAAACAATAGTTTAAAGACCAAATTGGTATTGGTATGGATAATACATAATATATGCAAGGTCCGGGGTTCAAACCCCGGCCACCACAAAAAGAAAGATCAAATTGATGAGAGAGTGTTAGTTTCAAGACTAAATTGGTATTTATTTGCATAACCTCTTAAAAGAAATTAAGAGGTAAATACCAATACTATATTGAATATATTATTTGCATAACCTCTTAGTAGAATATGCAAACATATTTGCATAACCTCTTAGTAGAATATGCAAACATATTCTACTATATTGAAATCCACAAGAAGTGGATAAGTTGATTTGGCCTCCTCAAGATTTAATGTACAAGCTCTCTTAGCTTCAGTCTCAAGATCCACAGGACGAAGTGTGAGACTATAAGGTGTATTTGGGTCAACCAAACCAATCTAAAATAATAAACAATGTAATTAGAATGGCTTAATGTTAATGAACACTATCATTAAATCAAAATAATTTGGAAATAATTTCATGTAAATTAAAATAAATTAACAATAATAATGCATACATCTTCAGCTAGGTAAAAGAAAGATGAAGCAGCAAAAAGTATTCTCTGTCCACTTCCTCCTCCACCACTCCAAATTCCACCAAAAGTGCAATTCTGATAAGGACATGGATAGTTCAATTTAAGTGCCTGACGAACTATCTTTTTGCATTTTTTAAAACTGGCTCCAGAAGCAGGGGCATTGGCCTTAAATTCTTCTCCAGCATATGTGTATGTCCCTTTGAAAAACAAAATATTTGTTATTGATTCTAAAAATAGCGAAATTAAAAAGGTAAAATTGAAAATCGACCGTATTAGTTTTTTATTTTTAAAACTCGGTATCTGACCTAACGATCGGCTAAACCAAGAGTTGTTTTAGTCAACTTAATCTCTTAAATAATAAATAATTTGATCGAAGATATTTTCAATTTCAACAAACAATTTAAAACTCAATAACTTGTTAAAATAACTTGTATTTACCATCAAATCCAGCTAAAATGCAAGGGTTAGGAGAATTATGAGTGACCTTCAAAATCTCTGCCCCTGAAACTAACACTCTTAAAAGAAATTAAGTGGTGTTAGTTTCAAGACCTAATAAATTTGTTTATGCAAAGAAATACCAATAGTTACATAACCAATACCTAAAATAACATTTAGATGGGGTATTTATTTGCATAAACAAATTTATTTAAGTGAAAGGTTATGTAACTTTTTTTTTGAAAGAAAGGTTATATAACTATAAACAAGGTTGAATGTCATTTTACTAAAAAGATGGAAAACTGACTTCAAATGTCAATTCCCCTTGCAAAGTACCTCACTTGAAGAATGATTCAGATTCAGATAGTGAATAATGATATAAATTCACATATACTAGTATTGAGTTAGTTACACGAATGAGTTTATTTATATCTGAAAAGTGCTAAAATATAATTGCGCTAACTTTGTTTGTTGTTGTGACGTGACGAATGGGCATTGTGTTGTATGTTACTTTAGGTTTTGCCGGTAGAAATAGAATGCATAAGTGGCAAGAATGTCCTTTTCAAAAATGGTCAATTGCACTCTTTTGACTCTATTATTTTCTGCACCGGCTTCAAGAGATCTACCCACAAATGGCTTAAGGTTTGGAAATTTTCTTGTCTTTTTTATTAGATCATTTTTAATTGTATTAAATATTATTTTTATTAAATATTAAATTTTCTTTTGATGATGAATAGATCAACATCAACAACAGCAACAACGGTAAAATGAAGGTTAAAAAAAAAATATAGTTTTTAAGACTCTTTATTTTAATATATGTTACATGAAAATGGAAAATGTAGAAACCAAAAGAAATGTGGCCATATATACTTTGACGTATGTTGGACTTTATATATAATCTAATTAATTATTTTTTGGTAGGGGGATGATTACCTTTTGAATGATGATGGTATTCCCAAGCCAAGTTACCCCATTCATTGGAAGGGAAAGAATGGTTTGTATTGTGTTGGACTATCAAGGAGAGGTTTCTATGGAGCTGGTGCGGATGCAAAAAATATAGCAAATGATGTGAGATCTATCATGCAAAATCTATGA

Protein sequence

>MS.gene25678.t1

MKKENERVIVVGAGPSGLSVAASLTNQSIPYTILERENCFASLWKKYSYDRLHLHLKKQFCELPHKPFPPSFPSYIPKQKFLQYLEDYVAHFKINPLYHRTVENAEYDEGSEKWKVKAMNKDSGEVEEYEGRFLVVASGETSDPFVPEIEGLKSFTGKVIHSTGFKNGKEFKDEHVLVVGSGNSGMEIALDLINHGAKTSIVVRSKVHILSSGMLNLGLFLMKYLSMEMVDSMMVMLSKMVYGDVTNYGVGRPSEGPFYMKVKYGKYPIIDVGTFRKIKSQELKVLPVEIECISGKNVLFKNGQLHSFDSIIFCTGFKRSTHKWLKGDDYLLNDDGIPKPSYPIHWKGKNGLYCVGLSRRGFYGAGADAKNIANDVRSIMQNL