Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25688.t1 | XP_013458443.1 | 97.3 | 111 | 3 | 0 | 1 | 111 | 5 | 115 | 1.30E-59 | 238.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25688.t1 | I3SLJ0 | 97.3 | 111 | 3 | 0 | 1 | 111 | 5 | 115 | 9.1e-60 | 238.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene25688 | 0.802264 | 6.09E-49 | -1.69E-46 |
| MS.gene050359 | MS.gene25688 | 0.818871 | 1.56E-52 | -1.69E-46 |
| MS.gene051184 | MS.gene25688 | 0.823701 | 1.20E-53 | -1.69E-46 |
| MS.gene051831 | MS.gene25688 | 0.871135 | 8.61E-67 | -1.69E-46 |
| MS.gene053963 | MS.gene25688 | 0.818806 | 1.62E-52 | -1.69E-46 |
| MS.gene054892 | MS.gene25688 | 0.827864 | 1.24E-54 | -1.69E-46 |
| MS.gene054893 | MS.gene25688 | 0.831292 | 1.81E-55 | -1.69E-46 |
| MS.gene055147 | MS.gene25688 | 0.804989 | 1.66E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene25688 | 0.80059 | 1.34E-48 | -1.69E-46 |
| MS.gene057622 | MS.gene25688 | 0.809936 | 1.48E-50 | -1.69E-46 |
| MS.gene058592 | MS.gene25688 | 0.83851 | 2.76E-57 | -1.69E-46 |
| MS.gene05878 | MS.gene25688 | 0.801702 | 7.95E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene25688 | 0.82822 | 1.01E-54 | -1.69E-46 |
| MS.gene060412 | MS.gene25688 | 0.802859 | 4.59E-49 | -1.69E-46 |
| MS.gene060840 | MS.gene25688 | 0.814338 | 1.62E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 48 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGCAACAATTCTCTATTT+TGG | 0.056794 | 8.1:+6409629 | MS.gene25688:CDS |
| CTCCCAGCCCGCCCGTTCCC+TGG | 0.242878 | 8.1:-6409672 | None:intergenic |
| CCCCAGGGAACGGGCGGGCT+GGG | 0.293996 | 8.1:+6409670 | MS.gene25688:CDS |
| TCCCAGCCCGCCCGTTCCCT+GGG | 0.312958 | 8.1:-6409671 | None:intergenic |
| CCATGCTTTGGATGCGGAAT+TGG | 0.323771 | 8.1:+6409474 | MS.gene25688:CDS |
| ACCCCAGGGAACGGGCGGGC+TGG | 0.341294 | 8.1:+6409669 | MS.gene25688:CDS |
| GTCCTCTGGATCTCTAATTA+AGG | 0.363548 | 8.1:-6409421 | None:intergenic |
| GATAAGCCCCTCCCATGCTT+TGG | 0.389734 | 8.1:+6409462 | MS.gene25688:CDS |
| TCGGAAGGACCCCAGGGAAC+GGG | 0.392848 | 8.1:+6409661 | MS.gene25688:CDS |
| ATCAAAATTCTTAAAAGAAA+CGG | 0.429179 | 8.1:-6407054 | None:intergenic |
| TTTAAGAAAGGGCGTGGAAT+CGG | 0.452413 | 8.1:+6407025 | MS.gene25688:CDS |
| TTTCCCTTTCCGTGAGCCAT+TGG | 0.452477 | 8.1:-6409393 | None:intergenic |
| GATCCAGAGGACTTCCAGTC+AGG | 0.454913 | 8.1:+6409432 | MS.gene25688:CDS |
| AGAGAATGTTGATTTAAGAA+AGG | 0.460736 | 8.1:+6407013 | MS.gene25688:CDS |
| ATCATTATCGGAAGGACCCC+AGG | 0.469804 | 8.1:+6409654 | MS.gene25688:CDS |
| GATCCAATGGCTCACGGAAA+GGG | 0.471290 | 8.1:+6409390 | MS.gene25688:CDS |
| GAGAATGTTGATTTAAGAAA+GGG | 0.481994 | 8.1:+6407014 | MS.gene25688:CDS |
| GATTTATTTGCCCTCCTATG+TGG | 0.489666 | 8.1:+6409603 | MS.gene25688:CDS |
| TGTTGATTTAAGAAAGGGCG+TGG | 0.497594 | 8.1:+6407019 | MS.gene25688:CDS |
| CTTTGTTGTTGCAGATGGTA+GGG | 0.498784 | 8.1:+6406986 | None:intergenic |
| AGTCCTGACTGGAAGTCCTC+TGG | 0.502119 | 8.1:-6409435 | None:intergenic |
| CCTTTGTTGTTGCAGATGGT+AGG | 0.504377 | 8.1:+6406985 | None:intergenic |
| CCAATTCCGCATCCAAAGCA+TGG | 0.518285 | 8.1:-6409474 | None:intergenic |
| GAAGGACCCCAGGGAACGGG+CGG | 0.528140 | 8.1:+6409664 | MS.gene25688:CDS |
| ATCGGAAGGACCCCAGGGAA+CGG | 0.537686 | 8.1:+6409660 | MS.gene25688:CDS |
| CTTTATGTGGCAGGACAAGC+AGG | 0.542559 | 8.1:+6409366 | MS.gene25688:intron |
| CCCCTCCCATGCTTTGGATG+CGG | 0.543713 | 8.1:+6409468 | MS.gene25688:CDS |
| CTTGAATTACTCCGAGCAAA+GGG | 0.545855 | 8.1:-6407086 | None:intergenic |
| TTCCGCATCCAAAGCATGGG+AGG | 0.555498 | 8.1:-6409470 | None:intergenic |
| TCTTGAATTACTCCGAGCAA+AGG | 0.556216 | 8.1:-6407087 | None:intergenic |
| AAGGACCCCAGGGAACGGGC+GGG | 0.560056 | 8.1:+6409665 | MS.gene25688:CDS |
| AGATCCAATGGCTCACGGAA+AGG | 0.578977 | 8.1:+6409389 | MS.gene25688:CDS |
| GCTTATCATAAAGTCCTGAC+TGG | 0.578995 | 8.1:-6409446 | None:intergenic |
| TCCGCATCCAAAGCATGGGA+GGG | 0.588988 | 8.1:-6409469 | None:intergenic |
| GCTTTGGATGCGGAATTGGA+TGG | 0.591155 | 8.1:+6409478 | MS.gene25688:CDS |
| CAATTCCGCATCCAAAGCAT+GGG | 0.593569 | 8.1:-6409473 | None:intergenic |
| GTTGCATAGAACCACATAGG+AGG | 0.594452 | 8.1:-6409614 | None:intergenic |
| CCGCATCCAAAGCATGGGAG+GGG | 0.606480 | 8.1:-6409468 | None:intergenic |
| AGGACAAGCAGGAGATCCAA+TGG | 0.609106 | 8.1:+6409377 | MS.gene25688:intron |
| TGCCTTAATTAGAGATCCAG+AGG | 0.616154 | 8.1:+6409419 | MS.gene25688:CDS |
| TTGCATAGAACCACATAGGA+GGG | 0.616476 | 8.1:-6409613 | None:intergenic |
| ATTGTTGCATAGAACCACAT+AGG | 0.645975 | 8.1:-6409617 | None:intergenic |
| TCATTATCGGAAGGACCCCA+GGG | 0.659027 | 8.1:+6409655 | MS.gene25688:CDS |
| CCCAGCCCGCCCGTTCCCTG+GGG | 0.659175 | 8.1:-6409670 | None:intergenic |
| GCAGGAGATCCAATGGCTCA+CGG | 0.665431 | 8.1:+6409384 | MS.gene25688:CDS |
| TGTTGTTGCAGATGGTAGGG+TGG | 0.672021 | 8.1:+6406989 | None:intergenic |
| AGAGATTACAGCAATTGCAG+AGG | 0.673672 | 8.1:-6409695 | None:intergenic |
| TTTGCTCGGAGTAATTCAAG+AGG | 0.694585 | 8.1:+6407089 | MS.gene25688:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAAAATAAAATAAAAT+AGG | - | chr8.1:6407165-6407184 | None:intergenic | 0.0% |
| !! | AAATAAAATAAAATAGGTAA+TGG | - | chr8.1:6407159-6407178 | None:intergenic | 10.0% |
| !! | TAAATCATAAAAATAATTGT+TGG | - | chr8.1:6408081-6408100 | None:intergenic | 10.0% |
| !!! | GATTTTTTTTTTTTTTGAAA+CGG | - | chr8.1:6407330-6407349 | None:intergenic | 10.0% |
| !!! | TAATTTTCGTTTTTATTTTT+GGG | - | chr8.1:6408925-6408944 | None:intergenic | 10.0% |
| !!! | TTTTGTAAGAAAAAATAAAT+TGG | - | chr8.1:6409287-6409306 | None:intergenic | 10.0% |
| !! | ATATATTCTACTATAAATAG+AGG | + | chr8.1:6408019-6408038 | MS.gene25688:intron | 15.0% |
| !! | ATCAAAATTCTTAAAAGAAA+CGG | - | chr8.1:6407057-6407076 | None:intergenic | 15.0% |
| !! | CATATTAAAATGATGAAAAT+TGG | + | chr8.1:6408945-6408964 | MS.gene25688:intron | 15.0% |
| !! | TAATCTGTATAATAAATACT+AGG | - | chr8.1:6407357-6407376 | None:intergenic | 15.0% |
| !!! | CAAAACTATTTTATCAAATT+TGG | + | chr8.1:6408108-6408127 | MS.gene25688:intron | 15.0% |
| !!! | GTAATTTTCGTTTTTATTTT+TGG | - | chr8.1:6408926-6408945 | None:intergenic | 15.0% |
| !!! | TTAAGAATTTTGATCTTTTA+AGG | + | chr8.1:6407063-6407082 | MS.gene25688:CDS | 15.0% |
| !! | AAATCCTAATATTCACTATT+AGG | + | chr8.1:6407940-6407959 | MS.gene25688:intron | 20.0% |
| !! | ACTTAAGTAGAAAAATCATA+TGG | - | chr8.1:6407134-6407153 | None:intergenic | 20.0% |
| !! | AGTAATATGCTAATGATTTA+TGG | + | chr8.1:6409198-6409217 | MS.gene25688:intron | 20.0% |
| !! | ATGTTTATTACCTAGAAAAT+AGG | + | chr8.1:6408795-6408814 | MS.gene25688:intron | 20.0% |
| !! | ATTCATCTATATCGATATAA+TGG | - | chr8.1:6409096-6409115 | None:intergenic | 20.0% |
| !! | TAATAGTGAATATTAGGATT+TGG | - | chr8.1:6407941-6407960 | None:intergenic | 20.0% |
| !! | TAATCCTAATAGTGAATATT+AGG | - | chr8.1:6407947-6407966 | None:intergenic | 20.0% |
| !! | TAGAATTATAGATTAGGATT+TGG | + | chr8.1:6407965-6407984 | MS.gene25688:intron | 20.0% |
| !! | TAGGATTAGAATTATAGATT+AGG | + | chr8.1:6407959-6407978 | MS.gene25688:intron | 20.0% |
| !! | TCAATTTGCAATTATATCAT+TGG | + | chr8.1:6407412-6407431 | MS.gene25688:intron | 20.0% |
| !! | TTTAATACTAGGATTTGATT+AGG | - | chr8.1:6407302-6407321 | None:intergenic | 20.0% |
| !!! | TTAAATTGCAGATTTCTTTT+TGG | + | chr8.1:6409581-6409600 | MS.gene25688:intron | 20.0% |
| !!! | TTGTCATGTGAATTTTTTAT+AGG | + | chr8.1:6408982-6409001 | MS.gene25688:intron | 20.0% |
| ! | AAACGGCAAAATTTAATACT+AGG | - | chr8.1:6407313-6407332 | None:intergenic | 25.0% |
| ! | AACTATTAGGAAAGATTTAG+AGG | - | chr8.1:6408378-6408397 | None:intergenic | 25.0% |
| ! | ACAGATTAGAATCATAGATT+AGG | + | chr8.1:6407369-6407388 | MS.gene25688:intron | 25.0% |
| ! | AGAATAGACTCATTAAATAC+TGG | + | chr8.1:6409252-6409271 | MS.gene25688:intron | 25.0% |
| ! | AGACTATAAGAGAAACTATT+AGG | - | chr8.1:6408391-6408410 | None:intergenic | 25.0% |
| ! | ATTACTAGTATTTCAATCCT+AGG | - | chr8.1:6408732-6408751 | None:intergenic | 25.0% |
| ! | CATTGTATTTGATAAATGCA+TGG | - | chr8.1:6408767-6408786 | None:intergenic | 25.0% |
| ! | CTTTCATCAATTATACAAAG+AGG | - | chr8.1:6408478-6408497 | None:intergenic | 25.0% |
| ! | GAGAGAAAATTCATCAAAAA+AGG | - | chr8.1:6407515-6407534 | None:intergenic | 25.0% |
| ! | GTTCTATCATAAACCATATT+TGG | + | chr8.1:6408338-6408357 | MS.gene25688:intron | 25.0% |
| ! | TAGAGAAAATACAAACAACA+AGG | - | chr8.1:6407842-6407861 | None:intergenic | 25.0% |
| ! | TATAGATTAGGATTTGGATT+AGG | + | chr8.1:6407971-6407990 | MS.gene25688:intron | 25.0% |
| ! | TGGTTTATGATAGAACATTA+TGG | - | chr8.1:6408334-6408353 | None:intergenic | 25.0% |
| ! | TTATGATGCAACAATTACAA+AGG | - | chr8.1:6408445-6408464 | None:intergenic | 25.0% |
| ! | TTTATCAAATTTGGCTAAAC+TGG | + | chr8.1:6408117-6408136 | MS.gene25688:intron | 25.0% |
| !! | ATGCAACAATTCTCTATTTT+GGG | + | chr8.1:6409630-6409649 | MS.gene25688:CDS | 25.0% |
| !! | GATGAAAATTGGACTTTTAA+TGG | + | chr8.1:6408956-6408975 | MS.gene25688:intron | 25.0% |
| !! | TATATCGATATAATGGAAGT+CGG | - | chr8.1:6409089-6409108 | None:intergenic | 25.0% |
| !! | TATGCAACAATTCTCTATTT+TGG | + | chr8.1:6409629-6409648 | MS.gene25688:CDS | 25.0% |
| !! | TCTTATTATCTCTTTTCATC+CGG | + | chr8.1:6407576-6407595 | MS.gene25688:intron | 25.0% |
| !!! | ACTTAGTAAGCTTTATTTTG+AGG | + | chr8.1:6407893-6407912 | MS.gene25688:intron | 25.0% |
| !!! | AGAGAATGTTGATTTAAGAA+AGG | + | chr8.1:6407013-6407032 | MS.gene25688:CDS | 25.0% |
| !!! | CTTAGTAAGCTTTATTTTGA+GGG | + | chr8.1:6407894-6407913 | MS.gene25688:intron | 25.0% |
| !!! | GAGAATGTTGATTTAAGAAA+GGG | + | chr8.1:6407014-6407033 | MS.gene25688:CDS | 25.0% |
| !!! | TCACTTTTGTTTGATAACTT+TGG | - | chr8.1:6408577-6408596 | None:intergenic | 25.0% |
| !!! | TCTATTTTGGGAATCATTAT+CGG | + | chr8.1:6409642-6409661 | MS.gene25688:CDS | 25.0% |
| !!! | TTAAGTTTGTTACAATGTGT+TGG | - | chr8.1:6407872-6407891 | None:intergenic | 25.0% |
| !!! | TTAGTAAGCTTTATTTTGAG+GGG | + | chr8.1:6407895-6407914 | MS.gene25688:intron | 25.0% |
| !!! | TTTTCGTTTTTATTTTTGGG+TGG | - | chr8.1:6408922-6408941 | None:intergenic | 25.0% |
| AAGTCATTATAGTTGCTAGT+GGG | - | chr8.1:6408840-6408859 | None:intergenic | 30.0% | |
| AAGTGCAAGTAGTTATTTGA+AGG | - | chr8.1:6409349-6409368 | None:intergenic | 30.0% | |
| AGATCAAAGTCAAAAGACAA+AGG | - | chr8.1:6409127-6409146 | None:intergenic | 30.0% | |
| AGATTTAGAGGTTAATGAGT+TGG | - | chr8.1:6408366-6408385 | None:intergenic | 30.0% | |
| AGTGCAAGTAGTTATTTGAA+GGG | - | chr8.1:6409348-6409367 | None:intergenic | 30.0% | |
| ATAACTACTTGCACTTTATG+TGG | + | chr8.1:6409353-6409372 | MS.gene25688:intron | 30.0% | |
| ATCAAAGTCAAAAGACAAAG+GGG | - | chr8.1:6409125-6409144 | None:intergenic | 30.0% | |
| ATTTGATAAATGCATGGTAG+TGG | - | chr8.1:6408761-6408780 | None:intergenic | 30.0% | |
| GATCAAAGTCAAAAGACAAA+GGG | - | chr8.1:6409126-6409145 | None:intergenic | 30.0% | |
| GGATGAAAAGAGATAATAAG+AGG | - | chr8.1:6407577-6407596 | None:intergenic | 30.0% | |
| GGATTTGATTAGGATTGATA+AGG | - | chr8.1:6407292-6407311 | None:intergenic | 30.0% | |
| GTAATTCAAGAGGTAACAAT+AGG | + | chr8.1:6407099-6407118 | MS.gene25688:intron | 30.0% | |
| TAAGTCATTATAGTTGCTAG+TGG | - | chr8.1:6408841-6408860 | None:intergenic | 30.0% | |
| TCACTATAGCAAAGACAATT+GGG | - | chr8.1:6407782-6407801 | None:intergenic | 30.0% | |
| TTTGATAAATGCATGGTAGT+GGG | - | chr8.1:6408760-6408779 | None:intergenic | 30.0% | |
| ! | GAGATTCTTATTTATAGCCT+AGG | + | chr8.1:6408712-6408731 | MS.gene25688:intron | 30.0% |
| ! | TAATGAGTTGGATCCAAATA+TGG | - | chr8.1:6408354-6408373 | None:intergenic | 30.0% |
| !! | TTTGATAACTTTGGTTCTAC+TGG | - | chr8.1:6408568-6408587 | None:intergenic | 30.0% |
| !!! | AGTTCTTATTTTGTTAGTGG+AGG | + | chr8.1:6407202-6407221 | MS.gene25688:intron | 30.0% |
| !!! | GTCAGTTCTTATTTTGTTAG+TGG | + | chr8.1:6407199-6407218 | MS.gene25688:intron | 30.0% |
| !!! | GTCTTTTGACTTTGATCTTA+GGG | + | chr8.1:6409129-6409148 | MS.gene25688:intron | 30.0% |
| !!! | TAGTAAGCTTTATTTTGAGG+GGG | + | chr8.1:6407896-6407915 | MS.gene25688:intron | 30.0% |
| !!! | TGTCTTTTGACTTTGATCTT+AGG | + | chr8.1:6409128-6409147 | MS.gene25688:intron | 30.0% |
| AGTTCTTAACCCAAGAACAA+AGG | + | chr8.1:6408635-6408654 | MS.gene25688:intron | 35.0% | |
| ATTGTTGCATAGAACCACAT+AGG | - | chr8.1:6409620-6409639 | None:intergenic | 35.0% | |
| CTGCACATTATCTCTAAACT+AGG | - | chr8.1:6409234-6409253 | None:intergenic | 35.0% | |
| GGGTTAAGAACTTATAGTCT+TGG | - | chr8.1:6408627-6408646 | None:intergenic | 35.0% | |
| GTCACTATAGCAAAGACAAT+TGG | - | chr8.1:6407783-6407802 | None:intergenic | 35.0% | |
| TCAAAGTCAAAAGACAAAGG+GGG | - | chr8.1:6409124-6409143 | None:intergenic | 35.0% | |
| ! | AATTTTCTCTCTCCTCTACA+AGG | + | chr8.1:6407524-6407543 | MS.gene25688:intron | 35.0% |
| ! | AGAGCTTTTCCTTTGTTCTT+GGG | - | chr8.1:6408647-6408666 | None:intergenic | 35.0% |
| ! | CATGTTAGTGCCTATTTTCT+AGG | - | chr8.1:6408808-6408827 | None:intergenic | 35.0% |
| ! | CTGGTTGAATCAAATTTTCC+CGG | - | chr8.1:6407694-6407713 | None:intergenic | 35.0% |
| ! | TAGAGTGATAAAGCGTTCAA+AGG | - | chr8.1:6407236-6407255 | None:intergenic | 35.0% |
| !! | ACTTATAGTCTTGGTTCTAC+CGG | - | chr8.1:6408618-6408637 | None:intergenic | 35.0% |
| !! | CTACTTTGAAGCATTTAGAG+AGG | + | chr8.1:6408866-6408885 | MS.gene25688:intron | 35.0% |
| !! | TTTTGGGAATCATTATCGGA+AGG | + | chr8.1:6409646-6409665 | MS.gene25688:CDS | 35.0% |
| !!! | CTTATTTTGTTAGTGGAGGA+AGG | + | chr8.1:6407206-6407225 | MS.gene25688:intron | 35.0% |
| AACAACCAAGCCTTACTAAG+TGG | + | chr8.1:6408283-6408302 | MS.gene25688:intron | 40.0% | |
| ACAACCAAGCCTTACTAAGT+GGG | + | chr8.1:6408284-6408303 | MS.gene25688:intron | 40.0% | |
| AGTAGGACAAAAACGTTGAC+CGG | - | chr8.1:6407598-6407617 | None:intergenic | 40.0% | |
| ATGATTTCAAAGGTGACTGG+TGG | - | chr8.1:6407751-6407770 | None:intergenic | 40.0% | |
| CTTGAATTACTCCGAGCAAA+GGG | - | chr8.1:6407089-6407108 | None:intergenic | 40.0% | |
| GAAATTGATACGTGACCGAT+AGG | + | chr8.1:6408497-6408516 | MS.gene25688:intron | 40.0% | |
| GATTTATTTGCCCTCCTATG+TGG | + | chr8.1:6409603-6409622 | MS.gene25688:CDS | 40.0% | |
| GCTTATCATAAAGTCCTGAC+TGG | - | chr8.1:6409449-6409468 | None:intergenic | 40.0% | |
| GTCCTCTGGATCTCTAATTA+AGG | - | chr8.1:6409424-6409443 | None:intergenic | 40.0% | |
| TACAAGGATCTGCTATGGTT+TGG | + | chr8.1:6407540-6407559 | MS.gene25688:intron | 40.0% | |
| TCAAGAGTTCACTAAGCATG+TGG | - | chr8.1:6409015-6409034 | None:intergenic | 40.0% | |
| TCCAGTTGTGCTACCATTTA+CGG | + | chr8.1:6407804-6407823 | MS.gene25688:intron | 40.0% | |
| TCTTGAATTACTCCGAGCAA+AGG | - | chr8.1:6407090-6407109 | None:intergenic | 40.0% | |
| TGCCTTAATTAGAGATCCAG+AGG | + | chr8.1:6409419-6409438 | MS.gene25688:CDS | 40.0% | |
| TGGATGATTTCAAAGGTGAC+TGG | - | chr8.1:6407754-6407773 | None:intergenic | 40.0% | |
| TTAGGATTGATAAGGCGACT+TGG | - | chr8.1:6407284-6407303 | None:intergenic | 40.0% | |
| TTGCATAGAACCACATAGGA+GGG | - | chr8.1:6409616-6409635 | None:intergenic | 40.0% | |
| TTTGCTCGGAGTAATTCAAG+AGG | + | chr8.1:6407089-6407108 | MS.gene25688:CDS | 40.0% | |
| ! | GACTGGTGGTTTTCGAAAAT+GGG | - | chr8.1:6407737-6407756 | None:intergenic | 40.0% |
| ! | GAGAGCTTTTCCTTTGTTCT+TGG | - | chr8.1:6408648-6408667 | None:intergenic | 40.0% |
| ! | TGACTGGTGGTTTTCGAAAA+TGG | - | chr8.1:6407738-6407757 | None:intergenic | 40.0% |
| ! | TTGAAGCATTTAGAGAGGCT+AGG | + | chr8.1:6408871-6408890 | MS.gene25688:intron | 40.0% |
| ! | TTTAAGAAAGGGCGTGGAAT+CGG | + | chr8.1:6407025-6407044 | MS.gene25688:CDS | 40.0% |
| ! | TTTTCGAAAATGGGTCTCAC+TGG | - | chr8.1:6407728-6407747 | None:intergenic | 40.0% |
| !! | ATAACTTTGGTTCTACTGGC+AGG | - | chr8.1:6408564-6408583 | None:intergenic | 40.0% |
| !! | ATAAGGCGACTTGGTGATTT+GGG | - | chr8.1:6407275-6407294 | None:intergenic | 40.0% |
| !! | TGTTGATTTAAGAAAGGGCG+TGG | + | chr8.1:6407019-6407038 | MS.gene25688:CDS | 40.0% |
| !! | TGTTTTCAAGACGGTCCTAT+CGG | - | chr8.1:6408515-6408534 | None:intergenic | 40.0% |
| !! | TTCCTTGCCTGTTTTCAAGA+CGG | - | chr8.1:6408524-6408543 | None:intergenic | 40.0% |
| !!! | ATCTTTTAAGGCCCTTTGCT+CGG | + | chr8.1:6407075-6407094 | MS.gene25688:CDS | 40.0% |
| !!! | TAAGCTTTATTTTGAGGGGG+AGG | + | chr8.1:6407899-6407918 | MS.gene25688:intron | 40.0% |
| AAATCATCCAGTAGCTGCAG+TGG | - | chr8.1:6407484-6407503 | None:intergenic | 45.0% | |
| ACCATAGCAGATCCTTGTAG+AGG | - | chr8.1:6407539-6407558 | None:intergenic | 45.0% | |
| ACTGACGTGAAAGAGAAGCA+AGG | - | chr8.1:6407655-6407674 | None:intergenic | 45.0% | |
| CAACCAAGCCTTACTAAGTG+GGG | + | chr8.1:6408285-6408304 | MS.gene25688:intron | 45.0% | |
| CAATCATAGCAGCGAGCAAA+TGG | - | chr8.1:6409536-6409555 | None:intergenic | 45.0% | |
| CAATTCCGCATCCAAAGCAT+GGG | - | chr8.1:6409476-6409495 | None:intergenic | 45.0% | |
| CACACATGTACTTGTGAGAG+GGG | + | chr8.1:6408169-6408188 | MS.gene25688:intron | 45.0% | |
| CCACACATGTACTTGTGAGA+GGG | + | chr8.1:6408168-6408187 | MS.gene25688:intron | 45.0% | |
| CTACTTGCACTTTATGTGGC+AGG | + | chr8.1:6409357-6409376 | MS.gene25688:intron | 45.0% | |
| GAGGTGAGTGTAGTCTGATT+TGG | + | chr8.1:6408038-6408057 | MS.gene25688:intron | 45.0% | |
| GAGTTCACTAAGCATGTGGA+AGG | - | chr8.1:6409011-6409030 | None:intergenic | 45.0% | |
| GATAGGACCGTCTTGAAAAC+AGG | + | chr8.1:6408514-6408533 | MS.gene25688:intron | 45.0% | |
| GCACAATGAATGTGCACAGT+AGG | - | chr8.1:6407626-6407645 | None:intergenic | 45.0% | |
| GCCTAAGTGGAAGTTATGCT+CGG | - | chr8.1:6407450-6407469 | None:intergenic | 45.0% | |
| GGCTCACTGGATGATTTCAA+AGG | - | chr8.1:6407761-6407780 | None:intergenic | 45.0% | |
| GTAAATGGTAGCACAACTGG+AGG | - | chr8.1:6407805-6407824 | None:intergenic | 45.0% | |
| GTCAAAAGACAAAGGGGGAA+TGG | - | chr8.1:6409119-6409138 | None:intergenic | 45.0% | |
| GTTCTGCACGTCATTTACAG+CGG | + | chr8.1:6409054-6409073 | MS.gene25688:intron | 45.0% | |
| GTTGCATAGAACCACATAGG+AGG | - | chr8.1:6409617-6409636 | None:intergenic | 45.0% | |
| TCCACACATGTACTTGTGAG+AGG | + | chr8.1:6408167-6408186 | MS.gene25688:intron | 45.0% | |
| TCCTCTACAAGGATCTGCTA+TGG | + | chr8.1:6407535-6407554 | MS.gene25688:intron | 45.0% | |
| TGCTTCTCTTTCACGTCAGT+GGG | + | chr8.1:6407655-6407674 | MS.gene25688:intron | 45.0% | |
| TTGAGCACGTAACACACTCA+AGG | - | chr8.1:6408418-6408437 | None:intergenic | 45.0% | |
| TTGCTTCTCTTTCACGTCAG+TGG | + | chr8.1:6407654-6407673 | MS.gene25688:intron | 45.0% | |
| ! | AGTGGGTTTCTCTTTGCATC+CGG | + | chr8.1:6407672-6407691 | MS.gene25688:intron | 45.0% |
| !! | GATAAGGCGACTTGGTGATT+TGG | - | chr8.1:6407276-6407295 | None:intergenic | 45.0% |
| AGATCCAATGGCTCACGGAA+AGG | + | chr8.1:6409389-6409408 | MS.gene25688:CDS | 50.0% | |
| AGGACAAGCAGGAGATCCAA+TGG | + | chr8.1:6409377-6409396 | MS.gene25688:intron | 50.0% | |
| ATCATTATCGGAAGGACCCC+AGG | + | chr8.1:6409654-6409673 | MS.gene25688:CDS | 50.0% | |
| CAAGCCTTACTAAGTGGGGT+CGG | + | chr8.1:6408289-6408308 | MS.gene25688:intron | 50.0% | |
| CCAATTCCGCATCCAAAGCA+TGG | - | chr8.1:6409477-6409496 | None:intergenic | 50.0% | |
| CCCTCTCACAAGTACATGTG+TGG | - | chr8.1:6408171-6408190 | None:intergenic | 50.0% | |
| CTTTATGTGGCAGGACAAGC+AGG | + | chr8.1:6409366-6409385 | MS.gene25688:intron | 50.0% | |
| GACCGTCTTGAAAACAGGCA+AGG | + | chr8.1:6408519-6408538 | MS.gene25688:intron | 50.0% | |
| GATCCAATGGCTCACGGAAA+GGG | + | chr8.1:6409390-6409409 | MS.gene25688:CDS | 50.0% | |
| GCAAAGACAATTGGGCTCAC+TGG | - | chr8.1:6407774-6407793 | None:intergenic | 50.0% | |
| GCCGAGCATAACTTCCACTT+AGG | + | chr8.1:6407446-6407465 | MS.gene25688:intron | 50.0% | |
| GCCGTAAATGGTAGCACAAC+TGG | - | chr8.1:6407808-6407827 | None:intergenic | 50.0% | |
| GTCGTAGCTTCAGCCGTAAA+TGG | - | chr8.1:6407820-6407839 | None:intergenic | 50.0% | |
| GTGCACAGTAGGACAGAAGT+AGG | - | chr8.1:6407615-6407634 | None:intergenic | 50.0% | |
| GTGGGTTTCTCTTTGCATCC+GGG | + | chr8.1:6407673-6407692 | MS.gene25688:intron | 50.0% | |
| TAGCAGCGAGCAAATGGAGA+AGG | - | chr8.1:6409530-6409549 | None:intergenic | 50.0% | |
| TCATTATCGGAAGGACCCCA+GGG | + | chr8.1:6409655-6409674 | MS.gene25688:CDS | 50.0% | |
| TTTCCCTTTCCGTGAGCCAT+TGG | - | chr8.1:6409396-6409415 | None:intergenic | 50.0% | |
| ! | CCATGCTTTGGATGCGGAAT+TGG | + | chr8.1:6409474-6409493 | MS.gene25688:CDS | 50.0% |
| ! | GCTTTGGATGCGGAATTGGA+TGG | + | chr8.1:6409478-6409497 | MS.gene25688:CDS | 50.0% |
| !! | ATAGTCTTGGTTCTACCGGC+AGG | - | chr8.1:6408614-6408633 | None:intergenic | 50.0% |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr8.1:6408297-6408316 | MS.gene25688:intron | 55.0% | |
| AGTCCTGACTGGAAGTCCTC+TGG | - | chr8.1:6409438-6409457 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTAAGGCT+TGG | - | chr8.1:6408291-6408310 | None:intergenic | 55.0% | |
| GATAAGCCCCTCCCATGCTT+TGG | + | chr8.1:6409462-6409481 | MS.gene25688:CDS | 55.0% | |
| GATCCAGAGGACTTCCAGTC+AGG | + | chr8.1:6409432-6409451 | MS.gene25688:CDS | 55.0% | |
| GCAGGAGATCCAATGGCTCA+CGG | + | chr8.1:6409384-6409403 | MS.gene25688:CDS | 55.0% | |
| GTAGCCGACCCCACTTAGTA+AGG | - | chr8.1:6408296-6408315 | None:intergenic | 55.0% | |
| GTGGAAGTTATGCTCGGCAG+AGG | - | chr8.1:6407444-6407463 | None:intergenic | 55.0% | |
| TCCGCATCCAAAGCATGGGA+GGG | - | chr8.1:6409472-6409491 | None:intergenic | 55.0% | |
| TTCCGCATCCAAAGCATGGG+AGG | - | chr8.1:6409473-6409492 | None:intergenic | 55.0% | |
| ! | CTCACTGGAGAAAGTGCAGC+TGG | - | chr8.1:6407713-6407732 | None:intergenic | 55.0% |
| !! | GCGACTTGGTGATTTGGGTG+AGG | - | chr8.1:6407270-6407289 | None:intergenic | 55.0% |
| !! | TTGGTTCTACTGGCAGGTCG+CGG | - | chr8.1:6408558-6408577 | None:intergenic | 55.0% |
| ACTGCTGCCACTGCAGCTAC+TGG | + | chr8.1:6407474-6407493 | MS.gene25688:intron | 60.0% | |
| ATCGGAAGGACCCCAGGGAA+CGG | + | chr8.1:6409660-6409679 | MS.gene25688:CDS | 60.0% | |
| CCGCATCCAAAGCATGGGAG+GGG | - | chr8.1:6409471-6409490 | None:intergenic | 60.0% | |
| CTACTGGCAGGTCGCGGTTA+GGG | - | chr8.1:6408552-6408571 | None:intergenic | 60.0% | |
| GGCAGCAGTAGGTGCCTAAG+TGG | - | chr8.1:6407463-6407482 | None:intergenic | 60.0% | |
| GTAGCTGCAGTGGCAGCAGT+AGG | - | chr8.1:6407474-6407493 | None:intergenic | 60.0% | |
| TCTACTGGCAGGTCGCGGTT+AGG | - | chr8.1:6408553-6408572 | None:intergenic | 60.0% | |
| ! | CCCCTCCCATGCTTTGGATG+CGG | + | chr8.1:6409468-6409487 | MS.gene25688:CDS | 60.0% |
| !! | TTGGTTCTACCGGCAGGTCG+CGG | - | chr8.1:6408608-6408627 | None:intergenic | 60.0% |
| AGACCCTAACCGCGACCTGC+CGG | + | chr8.1:6408596-6408615 | MS.gene25688:intron | 65.0% | |
| CTACCGGCAGGTCGCGGTTA+GGG | - | chr8.1:6408602-6408621 | None:intergenic | 65.0% | |
| TCGGAAGGACCCCAGGGAAC+GGG | + | chr8.1:6409661-6409680 | MS.gene25688:CDS | 65.0% | |
| TCTACCGGCAGGTCGCGGTT+AGG | - | chr8.1:6408603-6408622 | None:intergenic | 65.0% | |
| AAGGACCCCAGGGAACGGGC+GGG | + | chr8.1:6409665-6409684 | MS.gene25688:CDS | 70.0% | |
| GAAGGACCCCAGGGAACGGG+CGG | + | chr8.1:6409664-6409683 | MS.gene25688:CDS | 70.0% | |
| TCCCAGCCCGCCCGTTCCCT+GGG | - | chr8.1:6409674-6409693 | None:intergenic | 75.0% | |
| ! | ACCCCAGGGAACGGGCGGGC+TGG | + | chr8.1:6409669-6409688 | MS.gene25688:CDS | 80.0% |
| ! | CCCAGCCCGCCCGTTCCCTG+GGG | - | chr8.1:6409673-6409692 | None:intergenic | 80.0% |
| ! | CTCCCAGCCCGCCCGTTCCC+TGG | - | chr8.1:6409675-6409694 | None:intergenic | 80.0% |
| !! | CCCCAGGGAACGGGCGGGCT+GGG | + | chr8.1:6409670-6409689 | MS.gene25688:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 6407000 | 6409708 | 6407000 | ID=MS.gene25688 |
| chr8.1 | mRNA | 6407000 | 6409708 | 6407000 | ID=MS.gene25688.t1;Parent=MS.gene25688 |
| chr8.1 | exon | 6407000 | 6407110 | 6407000 | ID=MS.gene25688.t1.exon1;Parent=MS.gene25688.t1 |
| chr8.1 | CDS | 6407000 | 6407110 | 6407000 | ID=cds.MS.gene25688.t1;Parent=MS.gene25688.t1 |
| chr8.1 | exon | 6409379 | 6409505 | 6409379 | ID=MS.gene25688.t1.exon2;Parent=MS.gene25688.t1 |
| chr8.1 | CDS | 6409379 | 6409505 | 6409379 | ID=cds.MS.gene25688.t1;Parent=MS.gene25688.t1 |
| chr8.1 | exon | 6409592 | 6409708 | 6409592 | ID=MS.gene25688.t1.exon3;Parent=MS.gene25688.t1 |
| chr8.1 | CDS | 6409592 | 6409708 | 6409592 | ID=cds.MS.gene25688.t1;Parent=MS.gene25688.t1 |
| Gene Sequence |
| Protein sequence |
