AlfalfaGEDB | MS.gene27361

M. sativa cultivar XinJiangDaYe / MS.gene27361

KEGG: K01723
GO: GO:0003674 GO:0003824 GO:0004497 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27361.t1	XP_013466038.1	98.1	524	10	0	1	524	1	524	3.10E-299	1036.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27361.t1	K4BV52	65.2	538	169	3	1	524	1	534	5.0e-205	715.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27361.t1	Q7X9B4	98.1	524	10	0	1	524	1	524	2.2e-299	1036.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050414	MS.gene27361	0.808888	2.48E-50	-1.69E-46
MS.gene052016	MS.gene27361	0.882005	1.50E-70	-1.69E-46
MS.gene053143	MS.gene27361	0.823316	1.48E-53	-1.69E-46
MS.gene053620	MS.gene27361	0.834985	2.18E-56	-1.69E-46
MS.gene054178	MS.gene27361	0.847729	9.62E-60	-1.69E-46
MS.gene054585	MS.gene27361	0.801408	9.13E-49	-1.69E-46
MS.gene054617	MS.gene27361	0.845374	4.23E-59	-1.69E-46
MS.gene054892	MS.gene27361	0.817565	3.09E-52	-1.69E-46
MS.gene054893	MS.gene27361	0.81343	2.57E-51	-1.69E-46
MS.gene058649	MS.gene27361	0.815084	1.11E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27361.t1	MTR_1g021652	98.092	524	10	0	1	524	1	524	0.0	1058
MS.gene27361.t1	MTR_3g111530	71.915	470	130	2	57	524	90	559	0.0	707
MS.gene27361.t1	MTR_4g068550	48.125	480	243	4	48	523	2	479	2.83e-167	482
MS.gene27361.t1	MTR_1g034320	50.418	478	229	6	52	523	8	483	6.37e-167	481
MS.gene27361.t1	MTR_1g034330	47.228	487	249	6	41	522	3	486	3.48e-162	469
MS.gene27361.t1	MTR_2g087890	39.787	470	269	5	56	522	21	479	6.18e-120	361

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27361.t1	AT5G42650	60.077	521	204	3	4	524	2	518	0.0	649
MS.gene27361.t1	AT4G15440	40.217	368	216	4	137	501	4	370	9.41e-93	288

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Find 115 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAATCATAAAGTCTT+TGG	0.340810	1.2:-2951466	None:intergenic
AAACATGTGCTTTGGTCTAA+TGG	0.336037	1.2:+2951971	MS.gene27361:CDS
AAAGGGATGCCATAGTCACC+AGG	0.542937	1.2:-2950792	None:intergenic
AAATTAGCGACGGAAATTAG+AGG	0.465886	1.2:+2951659	MS.gene27361:CDS
AACCCTGTTGACACCGAACT+TGG	0.419339	1.2:+2951305	MS.gene27361:CDS
AACGTAGTTGTACTCCTTGA+TGG	0.385691	1.2:+2950954	MS.gene27361:CDS
AAGAAAGGTGAATTGTTGTT+AGG	0.339578	1.2:+2951851	MS.gene27361:CDS
AAGGGATGCCATAGTCACCA+GGG	0.700881	1.2:-2950791	None:intergenic
AATCTCAATCTCCAACTGTT+GGG	0.502505	1.2:+2951999	MS.gene27361:CDS
AATCTTCCACAAACTTCGGT+AGG	0.620192	1.2:-2951394	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGTTGAAACATGTGCTT+TGG	+	chr1.2:2951963-2951982	MS.gene27361:CDS	30.0%
ACAATTTGGAAGAGCAAAAA+GGG	+	chr1.2:2951790-2951809	MS.gene27361:CDS	30.0%
ATAGAATCTTCCACAAACTT+CGG	-	chr1.2:2951401-2951420	None:intergenic	30.0%
ATTTCCAACTTGAATCTCAA+AGG	-	chr1.2:2952104-2952123	None:intergenic	30.0%
CAAAAGTCTTGAAATCAATG+TGG	-	chr1.2:2952053-2952072	None:intergenic	30.0%
CCTAATTTGATGAAATGGAT+CGG	+	chr1.2:2951611-2951630	MS.gene27361:CDS	30.0%
CTAATTTGATGAAATGGATC+GGG	+	chr1.2:2951612-2951631	MS.gene27361:CDS	30.0%
GGTTGTAGAAATAGTCTAAA+CGG	-	chr1.2:2950836-2950855	None:intergenic	30.0%
TACAATTTGGAAGAGCAAAA+AGG	+	chr1.2:2951789-2951808	MS.gene27361:CDS	30.0%
TCCAAAAATGGTTCAGAAAT+GGG	+	chr1.2:2951337-2951356	MS.gene27361:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	2950603	2952177	2950603	ID=MS.gene27361
chr1.2	mRNA	2950603	2952177	2950603	ID=MS.gene27361.t1;Parent=MS.gene27361
chr1.2	exon	2950603	2952177	2950603	ID=MS.gene27361.t1.exon1;Parent=MS.gene27361.t1
chr1.2	CDS	2950603	2952177	2950603	ID=cds.MS.gene27361.t1;Parent=MS.gene27361.t1

Gene Sequence

>MS.gene27361

ATGGCTTCCTCTACTCTTTCAACTCCTTCTCCTAATCTCCTCAAACACCAAAAAAGACCCTCTTCCACCACCTTATCACGACGTTCCTCCACCTTTCTTCCACCTATAAGATCCTCAGTTTCAGAAAAACCACCTTTCCAAGTCTCCATCTCTCAACCACAAACAACCAAGCTTCCGATCCGTAAAATCCCTGGTGACTATGGCATCCCTTTCATAACACCCTACAAAGACCGTTTAGACTATTTCTACAACCAAGGTCGTGATGAATACTTCAAATCACGTATCCAAAAATACCAGTCAACCATCTTCCGCACTAACGTTCCTCCTGGTCCTTTCATAGCTCAAAACCCTAACGTAGTTGTACTCCTTGATGGTAAAAGCTTCCCCGTCCTCTTCGACGCATCGAAGATCGATAAAACCGATGTCTTCACAGGTACATACACACCTTCTACAGAACTCACTGGTGGTTATAGAGTTTTATCTTACCTTGATCCCTCCGAACCAAAACATGAACAGCTCAAGAAGTTGATGTTTTTTCTCCTTAAATCACGTAGTCGTCATGTTATTCCTGAGTTTCAGTCATGCTACAGAGAGTTTTTTAATGCTTTGGAGAATCAACTTGCTGAAAATGGTAACGCTAGTTTTGCTGATAATAATGATCAAGCAGCATTTAATTTCTTGAATCGTGCTTTGTTTGGTGTTAACCCTGTTGACACCGAACTTGGACTTGACGGTCCAAAAATGGTTCAGAAATGGGTTTTATTTCAGTTAGGTCCAGTTCTGAAACTGGGCCTACCGAAGTTTGTGGAAGATTCTATGATACATAATTTTCGTCTCCCATTTCGGCTCATTAAGAAAGATTACCAAAGACTTTATGATTTCTTTTATGCTTCCTCGGGATTTGCTCTCGAGGAAGCAGAGCGTTTAGGTGTTTCAAAAGAGGAGGCTTGTCATAATCTATTATTTGCAACGTGTTTTAATTCGTTTGGCGGGATTAAGCTGTTTTTTCCTAATTTGATGAAATGGATCGGGCGCGGTGGAGTGAGGTTGCATACAAAATTAGCGACGGAAATTAGAGGAGCAATTAGATCTGCTGGCGGGGAGATTACTATGGCGGCCATGGAGAATATGCCGTTGATGAAATCGGTGGTATACGAAGCTTTTCGTATTGATCCACCGGTTCCATTACAATTTGGAAGAGCAAAAAGGGACATGGTGATTGAAAATCATGAAAATGGTTTTTTGGTTAAGAAAGGTGAATTGTTGTTAGGATATCAACCTTTTGCTACTAAAGATCCTAAGATTTTTGATAGAGCAGAGGAATTTGTTGCAGATAGATTTGTTGGTGATGAAGGTGAGAAATTGTTGAAACATGTGCTTTGGTCTAATGGACCAGAATCTCAATCTCCAACTGTTGGGAATAAACAATGTGCTGGTAAAGATTTCACCACATTGATTTCAAGACTTTTGGTTGTTGAACTTTTTCTTAGGTATGATTCCTTTGAGATTCAAGTTGGAAATTCACCTTTAGGTCCTGCTATTACCCTCACCTCACTAAAGAGATCAAGCTTCTAG

Protein sequence

>MS.gene27361.t1

MASSTLSTPSPNLLKHQKRPSSTTLSRRSSTFLPPIRSSVSEKPPFQVSISQPQTTKLPIRKIPGDYGIPFITPYKDRLDYFYNQGRDEYFKSRIQKYQSTIFRTNVPPGPFIAQNPNVVVLLDGKSFPVLFDASKIDKTDVFTGTYTPSTELTGGYRVLSYLDPSEPKHEQLKKLMFFLLKSRSRHVIPEFQSCYREFFNALENQLAENGNASFADNNDQAAFNFLNRALFGVNPVDTELGLDGPKMVQKWVLFQLGPVLKLGLPKFVEDSMIHNFRLPFRLIKKDYQRLYDFFYASSGFALEEAERLGVSKEEACHNLLFATCFNSFGGIKLFFPNLMKWIGRGGVRLHTKLATEIRGAIRSAGGEITMAAMENMPLMKSVVYEAFRIDPPVPLQFGRAKRDMVIENHENGFLVKKGELLLGYQPFATKDPKIFDRAEEFVADRFVGDEGEKLLKHVLWSNGPESQSPTVGNKQCAGKDFTTLISRLLVVELFLRYDSFEIQVGNSPLGPAITLTSLKRSSF