AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27361

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27361.t1 MTR_1g021652 98.092 524 10 0 1 524 1 524 0.0 1058
MS.gene27361.t1 MTR_3g111530 71.915 470 130 2 57 524 90 559 0.0 707
MS.gene27361.t1 MTR_4g068550 48.125 480 243 4 48 523 2 479 2.83e-167 482
MS.gene27361.t1 MTR_1g034320 50.418 478 229 6 52 523 8 483 6.37e-167 481
MS.gene27361.t1 MTR_1g034330 47.228 487 249 6 41 522 3 486 3.48e-162 469
MS.gene27361.t1 MTR_2g087890 39.787 470 269 5 56 522 21 479 6.18e-120 361
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27361.t1 AT5G42650 60.077 521 204 3 4 524 2 518 0.0 649
MS.gene27361.t1 AT4G15440 40.217 368 216 4 137 501 4 370 9.41e-93 288

Find 115 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACATTGATTTCAAGACTTT+TGG 0.223131 1.2:+2952051 MS.gene27361:CDS
CATGACGACTACGTGATTTA+AGG 0.223634 1.2:-2951142 None:intergenic
TTCTTGAGCTGTTCATGTTT+TGG 0.234640 1.2:-2951104 None:intergenic
CCGATCCATTTCATCAAATT+AGG 0.234831 1.2:-2951611 None:intergenic
GAGAATCAACTTGCTGAAAA+TGG 0.244874 1.2:+2951212 MS.gene27361:CDS
CCACCGGTTCCATTACAATT+TGG 0.257621 1.2:+2951776 MS.gene27361:CDS
TACAATTTGGAAGAGCAAAA+AGG 0.266309 1.2:+2951789 MS.gene27361:CDS
CGTAAAATCCCTGGTGACTA+TGG 0.271642 1.2:+2950783 MS.gene27361:CDS
TCTGAAACTGAGGATCTTAT+AGG 0.272458 1.2:-2950705 None:intergenic
ACAGTTGGAGATTGAGATTC+TGG 0.272740 1.2:-2951995 None:intergenic
GTGATTGAAAATCATGAAAA+TGG 0.293983 1.2:+2951818 MS.gene27361:CDS
AAACATGTGCTTTGGTCTAA+TGG 0.336037 1.2:+2951971 MS.gene27361:CDS
CAAGTTGGAAATTCACCTTT+AGG 0.336124 1.2:+2952112 MS.gene27361:CDS
AAGAAAGGTGAATTGTTGTT+AGG 0.339578 1.2:+2951851 MS.gene27361:CDS
AAAAGAAATCATAAAGTCTT+TGG 0.340810 1.2:-2951466 None:intergenic
GTTAGGTCCAGTTCTGAAAC+TGG 0.360881 1.2:+2951370 MS.gene27361:CDS
AGTCCAAGTTCGGTGTCAAC+AGG 0.376332 1.2:-2951308 None:intergenic
TCTTTCTTAATGAGCCGAAA+TGG 0.384153 1.2:-2951440 None:intergenic
AACGTAGTTGTACTCCTTGA+TGG 0.385691 1.2:+2950954 MS.gene27361:CDS
TTTGCTCTTCCAAATTGTAA+TGG 0.388470 1.2:-2951785 None:intergenic
ATAGTCTAAACGGTCTTTGT+AGG 0.389470 1.2:-2950823 None:intergenic
TCAAGGAGTACAACTACGTT+AGG 0.399517 1.2:-2950951 None:intergenic
AACCCTGTTGACACCGAACT+TGG 0.419339 1.2:+2951305 MS.gene27361:CDS
CTCGAGGAAGCAGAGCGTTT+AGG 0.429148 1.2:+2951509 MS.gene27361:CDS
TTCTTGAATCGTGCTTTGTT+TGG 0.430570 1.2:+2951278 MS.gene27361:CDS
TTAGGATCTTTAGTAGCAAA+AGG 0.430684 1.2:-2951881 None:intergenic
AATTGTTGAAACATGTGCTT+TGG 0.436664 1.2:+2951963 MS.gene27361:CDS
TTCGATGCGTCGAAGAGGAC+GGG 0.442058 1.2:-2950987 None:intergenic
CTAATTTGATGAAATGGATC+GGG 0.442169 1.2:+2951612 MS.gene27361:CDS
CTTTCTTAATGAGCCGAAAT+GGG 0.448393 1.2:-2951439 None:intergenic
GATAGATTTGTTGGTGATGA+AGG 0.449657 1.2:+2951935 MS.gene27361:CDS
ATCGGAAGCTTGGTTGTTTG+TGG 0.457864 1.2:-2950759 None:intergenic
TGGACCGTCAAGTCCAAGTT+CGG 0.457945 1.2:-2951318 None:intergenic
TTTGTTGCAGATAGATTTGT+TGG 0.462474 1.2:+2951926 MS.gene27361:CDS
GGTTGTAGAAATAGTCTAAA+CGG 0.463350 1.2:-2950833 None:intergenic
TGCTGGCGGGGAGATTACTA+TGG 0.465831 1.2:+2951694 MS.gene27361:CDS
AAATTAGCGACGGAAATTAG+AGG 0.465886 1.2:+2951659 MS.gene27361:CDS
GGTAGGCCCAGTTTCAGAAC+TGG 0.470888 1.2:-2951377 None:intergenic
GGAGATTACTATGGCGGCCA+TGG 0.473614 1.2:+2951703 MS.gene27361:CDS
GACACCGAACTTGGACTTGA+CGG 0.474937 1.2:+2951314 MS.gene27361:CDS
CTTCCAAATTGTAATGGAAC+CGG 0.475194 1.2:-2951779 None:intergenic
GCGTTTAGGTGTTTCAAAAG+AGG 0.480545 1.2:+2951523 MS.gene27361:CDS
CCACCAGTGAGTTCTGTAGA+AGG 0.484397 1.2:-2951047 None:intergenic
GATTCCTTTGAGATTCAAGT+TGG 0.484812 1.2:+2952097 MS.gene27361:CDS
TCGTGATAAGGTGGTGGAAG+AGG 0.486006 1.2:-2950661 None:intergenic
GGTGGAGGAACGTCGTGATA+AGG 0.495151 1.2:-2950673 None:intergenic
GAATCTCAATCTCCAACTGT+TGG 0.495729 1.2:+2951998 MS.gene27361:CDS
CTGTAGCATGACTGAAACTC+AGG 0.495943 1.2:-2951170 None:intergenic
CCTAATTTGATGAAATGGAT+CGG 0.498399 1.2:+2951611 MS.gene27361:CDS
AATCTCAATCTCCAACTGTT+GGG 0.502505 1.2:+2951999 MS.gene27361:CDS
AGAGGAGCAATTAGATCTGC+TGG 0.504448 1.2:+2951677 MS.gene27361:CDS
TTCCGCACTAACGTTCCTCC+TGG 0.506823 1.2:+2950909 MS.gene27361:CDS
GGTTGTTTGTGGTTGAGAGA+TGG 0.510021 1.2:-2950748 None:intergenic
CATTGTTTATTCCCAACAGT+TGG 0.511671 1.2:-2952010 None:intergenic
TTAGACTATTTCTACAACCA+AGG 0.515498 1.2:+2950837 MS.gene27361:CDS
GAATATGCCGTTGATGAAAT+CGG 0.515909 1.2:+2951727 MS.gene27361:CDS
ACTGGGCCTACCGAAGTTTG+TGG 0.518134 1.2:+2951388 MS.gene27361:CDS
CTTTGTAGGGTGTTATGAAA+GGG 0.518456 1.2:-2950809 None:intergenic
GGATCTTATAGGTGGAAGAA+AGG 0.524920 1.2:-2950694 None:intergenic
TCTTTGTAGGGTGTTATGAA+AGG 0.526928 1.2:-2950810 None:intergenic
GAGCAATTAGATCTGCTGGC+GGG 0.527113 1.2:+2951681 MS.gene27361:CDS
TGAAGTATTCATCACGACCT+TGG 0.527248 1.2:-2950854 None:intergenic
GAGATGGAGACTTGGAAAGG+TGG 0.530805 1.2:-2950732 None:intergenic
GATAAAACCGATGTCTTCAC+AGG 0.538925 1.2:+2951014 MS.gene27361:CDS
AGCAATTAGATCTGCTGGCG+GGG 0.539011 1.2:+2951682 MS.gene27361:CDS
CAAGGAGTACAACTACGTTA+GGG 0.540708 1.2:-2950950 None:intergenic
AAAGGGATGCCATAGTCACC+AGG 0.542937 1.2:-2950792 None:intergenic
GTGGTTGAGAGATGGAGACT+TGG 0.545394 1.2:-2950740 None:intergenic
ATTTCCAACTTGAATCTCAA+AGG 0.547715 1.2:-2952101 None:intergenic
CGTGATAAGGTGGTGGAAGA+GGG 0.548060 1.2:-2950660 None:intergenic
TAGTCTAAACGGTCTTTGTA+GGG 0.553709 1.2:-2950822 None:intergenic
CTTCCGATCCGTAAAATCCC+TGG 0.555994 1.2:+2950774 MS.gene27361:CDS
TGTTTGAGGAGATTAGGAGA+AGG 0.557408 1.2:-2950627 None:intergenic
CTTCGATGCGTCGAAGAGGA+CGG 0.557973 1.2:-2950988 None:intergenic
TGATCTCTTTAGTGAGGTGA+GGG 0.559767 1.2:-2952146 None:intergenic
TCTTATAGGTGGAAGAAAGG+TGG 0.561423 1.2:-2950691 None:intergenic
AGGGTAATAGCAGGACCTAA+AGG 0.563300 1.2:-2952127 None:intergenic
TTGATCTCTTTAGTGAGGTG+AGG 0.564316 1.2:-2952147 None:intergenic
AGAAGGAGTTGAAAGAGTAG+AGG 0.564504 1.2:-2950610 None:intergenic
CATCAACGGCATATTCTCCA+TGG 0.564805 1.2:-2951720 None:intergenic
TAGTGCGGAAGATGGTTGAC+TGG 0.567027 1.2:-2950896 None:intergenic
CGATCTTCGATGCGTCGAAG+AGG 0.569780 1.2:-2950992 None:intergenic
AGGAACGTTAGTGCGGAAGA+TGG 0.576272 1.2:-2950904 None:intergenic
TTTAGGTGTTTCAAAAGAGG+AGG 0.581669 1.2:+2951526 MS.gene27361:CDS
GGATCGGGCGCGGTGGAGTG+AGG 0.582337 1.2:+2951627 MS.gene27361:CDS
ATAGAATCTTCCACAAACTT+CGG 0.583947 1.2:-2951398 None:intergenic
TCGATGCGTCGAAGAGGACG+GGG 0.588579 1.2:-2950986 None:intergenic
TATACCACCGATTTCATCAA+CGG 0.592868 1.2:-2951734 None:intergenic
CCAAATTGTAATGGAACCGG+TGG 0.594525 1.2:-2951776 None:intergenic
GTTGGGAATAAACAATGTGC+TGG 0.598250 1.2:+2952016 MS.gene27361:CDS
GGAACGTCGTGATAAGGTGG+TGG 0.600776 1.2:-2950667 None:intergenic
TATAGGTGGAAGAAAGGTGG+AGG 0.604481 1.2:-2950688 None:intergenic
TTCCTCGGGATTTGCTCTCG+AGG 0.607265 1.2:+2951493 MS.gene27361:CDS
AGTGAGGTGAGGGTAATAGC+AGG 0.615642 1.2:-2952136 None:intergenic
AATCTTCCACAAACTTCGGT+AGG 0.620192 1.2:-2951394 None:intergenic
GTCCAAGTTCGGTGTCAACA+GGG 0.625604 1.2:-2951307 None:intergenic
ATGAAATGGATCGGGCGCGG+TGG 0.626352 1.2:+2951620 MS.gene27361:CDS
TTAGGTCCAGTTCTGAAACT+GGG 0.627548 1.2:+2951371 MS.gene27361:CDS
GGAGGAACGTCGTGATAAGG+TGG 0.627902 1.2:-2950670 None:intergenic
GACCAGGAGGAACGTTAGTG+CGG 0.628753 1.2:-2950911 None:intergenic
GAAACTGAGGATCTTATAGG+TGG 0.630333 1.2:-2950702 None:intergenic
GAAGCTTGATCTCTTTAGTG+AGG 0.631938 1.2:-2952152 None:intergenic
TTGATGAAATGGATCGGGCG+CGG 0.633244 1.2:+2951617 MS.gene27361:CDS
ACACCTTCTACAGAACTCAC+TGG 0.635223 1.2:+2951044 MS.gene27361:CDS
GTTGCATACAAAATTAGCGA+CGG 0.661214 1.2:+2951649 MS.gene27361:CDS
TGGCGGGGAGATTACTATGG+CGG 0.671730 1.2:+2951697 MS.gene27361:CDS
TGAGAGATGGAGACTTGGAA+AGG 0.672847 1.2:-2950735 None:intergenic
GGAGCAATTAGATCTGCTGG+CGG 0.676095 1.2:+2951680 MS.gene27361:CDS
CAAAAGTCTTGAAATCAATG+TGG 0.688379 1.2:-2952050 None:intergenic
AAGGGATGCCATAGTCACCA+GGG 0.700881 1.2:-2950791 None:intergenic
TTCCTCGAGAGCAAATCCCG+AGG 0.708927 1.2:-2951495 None:intergenic
CCTTCTACAGAACTCACTGG+TGG 0.709735 1.2:+2951047 MS.gene27361:CDS
TATGCCGTTGATGAAATCGG+TGG 0.719714 1.2:+2951730 MS.gene27361:CDS
GTATGTACCTGTGAAGACAT+CGG 0.723042 1.2:-2951021 None:intergenic
TGAGCTATGAAAGGACCAGG+AGG 0.748813 1.2:-2950924 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAATCATAAAGTCTT+TGG - chr1.2:2951469-2951488 None:intergenic 20.0%
!!! AAATCATGAAAATGGTTTTT+TGG + chr1.2:2951826-2951845 MS.gene27361:CDS 20.0%
!!! TTTTTCCTAATTTGATGAAA+TGG + chr1.2:2951606-2951625 MS.gene27361:CDS 20.0%
! GTGATTGAAAATCATGAAAA+TGG + chr1.2:2951818-2951837 MS.gene27361:CDS 25.0%
!!! AAATGGGTTTTATTTCAGTT+AGG + chr1.2:2951353-2951372 MS.gene27361:CDS 25.0%
!!! AATGGTTTTTTGGTTAAGAA+AGG + chr1.2:2951836-2951855 MS.gene27361:CDS 25.0%
AATTGTTGAAACATGTGCTT+TGG + chr1.2:2951963-2951982 MS.gene27361:CDS 30.0%
ACAATTTGGAAGAGCAAAAA+GGG + chr1.2:2951790-2951809 MS.gene27361:CDS 30.0%
ATAGAATCTTCCACAAACTT+CGG - chr1.2:2951401-2951420 None:intergenic 30.0%
ATTTCCAACTTGAATCTCAA+AGG - chr1.2:2952104-2952123 None:intergenic 30.0%
CAAAAGTCTTGAAATCAATG+TGG - chr1.2:2952053-2952072 None:intergenic 30.0%
CCTAATTTGATGAAATGGAT+CGG + chr1.2:2951611-2951630 MS.gene27361:CDS 30.0%
CTAATTTGATGAAATGGATC+GGG + chr1.2:2951612-2951631 MS.gene27361:CDS 30.0%
GGTTGTAGAAATAGTCTAAA+CGG - chr1.2:2950836-2950855 None:intergenic 30.0%
TACAATTTGGAAGAGCAAAA+AGG + chr1.2:2951789-2951808 MS.gene27361:CDS 30.0%
TCCAAAAATGGTTCAGAAAT+GGG + chr1.2:2951337-2951356 MS.gene27361:CDS 30.0%
TCTGCTCTATCAAAAATCTT+AGG - chr1.2:2951902-2951921 None:intergenic 30.0%
TTAGGATCTTTAGTAGCAAA+AGG - chr1.2:2951884-2951903 None:intergenic 30.0%
TTTGCTCTTCCAAATTGTAA+TGG - chr1.2:2951788-2951807 None:intergenic 30.0%
TTTGTTGCAGATAGATTTGT+TGG + chr1.2:2951926-2951945 MS.gene27361:CDS 30.0%
! AAGAAAGGTGAATTGTTGTT+AGG + chr1.2:2951851-2951870 MS.gene27361:CDS 30.0%
! ATAATTTTCGTCTCCCATTT+CGG + chr1.2:2951426-2951445 MS.gene27361:CDS 30.0%
! TAAGATTTTTGATAGAGCAG+AGG + chr1.2:2951901-2951920 MS.gene27361:CDS 30.0%
! TGATTTCTTTTATGCTTCCT+CGG + chr1.2:2951478-2951497 MS.gene27361:CDS 30.0%
!! TGGTTGTTGAACTTTTTCTT+AGG + chr1.2:2952071-2952090 MS.gene27361:CDS 30.0%
!! TTAGACTATTTCTACAACCA+AGG + chr1.2:2950837-2950856 MS.gene27361:CDS 30.0%
!!! CACATTGATTTCAAGACTTT+TGG + chr1.2:2952051-2952070 MS.gene27361:CDS 30.0%
!!! CAGAGAGTTTTTTAATGCTT+TGG + chr1.2:2951190-2951209 MS.gene27361:CDS 30.0%
AAACATGTGCTTTGGTCTAA+TGG + chr1.2:2951971-2951990 MS.gene27361:CDS 35.0%
AAATTAGCGACGGAAATTAG+AGG + chr1.2:2951659-2951678 MS.gene27361:CDS 35.0%
AATCTCAATCTCCAACTGTT+GGG + chr1.2:2951999-2952018 MS.gene27361:CDS 35.0%
ATAGTCTAAACGGTCTTTGT+AGG - chr1.2:2950826-2950845 None:intergenic 35.0%
CATTGTTTATTCCCAACAGT+TGG - chr1.2:2952013-2952032 None:intergenic 35.0%
CCGATCCATTTCATCAAATT+AGG - chr1.2:2951614-2951633 None:intergenic 35.0%
CTTTCTTAATGAGCCGAAAT+GGG - chr1.2:2951442-2951461 None:intergenic 35.0%
GTCCAAAAATGGTTCAGAAA+TGG + chr1.2:2951336-2951355 MS.gene27361:CDS 35.0%
GTTGCATACAAAATTAGCGA+CGG + chr1.2:2951649-2951668 MS.gene27361:CDS 35.0%
TAGTCTAAACGGTCTTTGTA+GGG - chr1.2:2950825-2950844 None:intergenic 35.0%
TCTTTCTTAATGAGCCGAAA+TGG - chr1.2:2951443-2951462 None:intergenic 35.0%
TTTAGGTGTTTCAAAAGAGG+AGG + chr1.2:2951526-2951545 MS.gene27361:CDS 35.0%
! ACCCATTTCTGAACCATTTT+TGG - chr1.2:2951341-2951360 None:intergenic 35.0%
! AGATGGTTGACTGGTATTTT+TGG - chr1.2:2950890-2950909 None:intergenic 35.0%
! CAAGTTGGAAATTCACCTTT+AGG + chr1.2:2952112-2952131 MS.gene27361:CDS 35.0%
! CTTCCAAATTGTAATGGAAC+CGG - chr1.2:2951782-2951801 None:intergenic 35.0%
! CTTTGTAGGGTGTTATGAAA+GGG - chr1.2:2950812-2950831 None:intergenic 35.0%
! GAATATGCCGTTGATGAAAT+CGG + chr1.2:2951727-2951746 MS.gene27361:CDS 35.0%
! GATTTCTTTTATGCTTCCTC+GGG + chr1.2:2951479-2951498 MS.gene27361:CDS 35.0%
! TCTGAAACTGAGGATCTTAT+AGG - chr1.2:2950708-2950727 None:intergenic 35.0%
! TCTTTGTAGGGTGTTATGAA+AGG - chr1.2:2950813-2950832 None:intergenic 35.0%
! TTCTTGAATCGTGCTTTGTT+TGG + chr1.2:2951278-2951297 MS.gene27361:CDS 35.0%
! TTCTTGAGCTGTTCATGTTT+TGG - chr1.2:2951107-2951126 None:intergenic 35.0%
!! GAGAATCAACTTGCTGAAAA+TGG + chr1.2:2951212-2951231 MS.gene27361:CDS 35.0%
!! GATAGATTTGTTGGTGATGA+AGG + chr1.2:2951935-2951954 MS.gene27361:CDS 35.0%
!! GATTCCTTTGAGATTCAAGT+TGG + chr1.2:2952097-2952116 MS.gene27361:CDS 35.0%
!! TATACCACCGATTTCATCAA+CGG - chr1.2:2951737-2951756 None:intergenic 35.0%
!!! ACGTGTTTTAATTCGTTTGG+CGG + chr1.2:2951572-2951591 MS.gene27361:CDS 35.0%
!!! GCAACGTGTTTTAATTCGTT+TGG + chr1.2:2951569-2951588 MS.gene27361:CDS 35.0%
!!! TTAGGGTTTTGAGCTATGAA+AGG - chr1.2:2950936-2950955 None:intergenic 35.0%
!!! TTTTGGTGTTTGAGGAGATT+AGG - chr1.2:2950636-2950655 None:intergenic 35.0%
AACGTAGTTGTACTCCTTGA+TGG + chr1.2:2950954-2950973 MS.gene27361:CDS 40.0%
AATCTTCCACAAACTTCGGT+AGG - chr1.2:2951397-2951416 None:intergenic 40.0%
ACAGTTGGAGATTGAGATTC+TGG - chr1.2:2951998-2952017 None:intergenic 40.0%
AGAAGGAGTTGAAAGAGTAG+AGG - chr1.2:2950613-2950632 None:intergenic 40.0%
CATGACGACTACGTGATTTA+AGG - chr1.2:2951145-2951164 None:intergenic 40.0%
GAAACTGAGGATCTTATAGG+TGG - chr1.2:2950705-2950724 None:intergenic 40.0%
GAAGCTTGATCTCTTTAGTG+AGG - chr1.2:2952155-2952174 None:intergenic 40.0%
GAATCTCAATCTCCAACTGT+TGG + chr1.2:2951998-2952017 MS.gene27361:CDS 40.0%
GATAAAACCGATGTCTTCAC+AGG + chr1.2:2951014-2951033 MS.gene27361:CDS 40.0%
GCGTTTAGGTGTTTCAAAAG+AGG + chr1.2:2951523-2951542 MS.gene27361:CDS 40.0%
GGATCTTATAGGTGGAAGAA+AGG - chr1.2:2950697-2950716 None:intergenic 40.0%
GTATGTACCTGTGAAGACAT+CGG - chr1.2:2951024-2951043 None:intergenic 40.0%
GTTGGGAATAAACAATGTGC+TGG + chr1.2:2952016-2952035 MS.gene27361:CDS 40.0%
TCTTATAGGTGGAAGAAAGG+TGG - chr1.2:2950694-2950713 None:intergenic 40.0%
TGATCTCTTTAGTGAGGTGA+GGG - chr1.2:2952149-2952168 None:intergenic 40.0%
TGTTTGAGGAGATTAGGAGA+AGG - chr1.2:2950630-2950649 None:intergenic 40.0%
TTGATCTCTTTAGTGAGGTG+AGG - chr1.2:2952150-2952169 None:intergenic 40.0%
! CAAGGAGTACAACTACGTTA+GGG - chr1.2:2950953-2950972 None:intergenic 40.0%
! CATAGTCACCAGGGATTTTA+CGG - chr1.2:2950785-2950804 None:intergenic 40.0%
! TCAAGGAGTACAACTACGTT+AGG - chr1.2:2950954-2950973 None:intergenic 40.0%
! TGAAGTATTCATCACGACCT+TGG - chr1.2:2950857-2950876 None:intergenic 40.0%
! TTTTGAGCTATGAAAGGACC+AGG - chr1.2:2950930-2950949 None:intergenic 40.0%
!! AGCTTTTCGTATTGATCCAC+CGG + chr1.2:2951760-2951779 MS.gene27361:CDS 40.0%
!! TTAGGTCCAGTTCTGAAACT+GGG + chr1.2:2951371-2951390 MS.gene27361:CDS 40.0%
!!! AGGGTCTTTTTTGGTGTTTG+AGG - chr1.2:2950644-2950663 None:intergenic 40.0%
!!! AGGTGGTTTTTCTGAAACTG+AGG - chr1.2:2950718-2950737 None:intergenic 40.0%
!!! CGTGTTTTAATTCGTTTGGC+GGG + chr1.2:2951573-2951592 MS.gene27361:CDS 40.0%
!!! GAGCTGTTCATGTTTTGGTT+CGG - chr1.2:2951102-2951121 None:intergenic 40.0%
!!! TGTTCATGTTTTGGTTCGGA+GGG - chr1.2:2951098-2951117 None:intergenic 40.0%
ACACCTTCTACAGAACTCAC+TGG + chr1.2:2951044-2951063 MS.gene27361:CDS 45.0%
AGAGGAGCAATTAGATCTGC+TGG + chr1.2:2951677-2951696 MS.gene27361:CDS 45.0%
AGGGTAATAGCAGGACCTAA+AGG - chr1.2:2952130-2952149 None:intergenic 45.0%
ATCGGAAGCTTGGTTGTTTG+TGG - chr1.2:2950762-2950781 None:intergenic 45.0%
CATCAACGGCATATTCTCCA+TGG - chr1.2:2951723-2951742 None:intergenic 45.0%
CGTAAAATCCCTGGTGACTA+TGG + chr1.2:2950783-2950802 MS.gene27361:CDS 45.0%
CTGTAGCATGACTGAAACTC+AGG - chr1.2:2951173-2951192 None:intergenic 45.0%
GGTTGTTTGTGGTTGAGAGA+TGG - chr1.2:2950751-2950770 None:intergenic 45.0%
TATAGGTGGAAGAAAGGTGG+AGG - chr1.2:2950691-2950710 None:intergenic 45.0%
TGAGAGATGGAGACTTGGAA+AGG - chr1.2:2950738-2950757 None:intergenic 45.0%
TGGAAGAGCAAAAAGGGACA+TGG + chr1.2:2951796-2951815 MS.gene27361:CDS 45.0%
TGGACTTGACGGTCCAAAAA+TGG + chr1.2:2951325-2951344 MS.gene27361:CDS 45.0%
! CCAAATTGTAATGGAACCGG+TGG - chr1.2:2951779-2951798 None:intergenic 45.0%
! GATTTTACGGATCGGAAGCT+TGG - chr1.2:2950772-2950791 None:intergenic 45.0%
! TATGCCGTTGATGAAATCGG+TGG + chr1.2:2951730-2951749 MS.gene27361:CDS 45.0%
! TCACCAGGGATTTTACGGAT+CGG - chr1.2:2950780-2950799 None:intergenic 45.0%
!! CCACCGGTTCCATTACAATT+TGG + chr1.2:2951776-2951795 MS.gene27361:CDS 45.0%
!! GTTAGGTCCAGTTCTGAAAC+TGG + chr1.2:2951370-2951389 MS.gene27361:CDS 45.0%
!!! CTGTTCATGTTTTGGTTCGG+AGG - chr1.2:2951099-2951118 None:intergenic 45.0%
!!! TGGTGGAAGAGGGTCTTTTT+TGG - chr1.2:2950653-2950672 None:intergenic 45.0%
AAAGGGATGCCATAGTCACC+AGG - chr1.2:2950795-2950814 None:intergenic 50.0%
AACCCTGTTGACACCGAACT+TGG + chr1.2:2951305-2951324 MS.gene27361:CDS 50.0%
AAGGGATGCCATAGTCACCA+GGG - chr1.2:2950794-2950813 None:intergenic 50.0%
AGCAATTAGATCTGCTGGCG+GGG + chr1.2:2951682-2951701 MS.gene27361:CDS 50.0%
AGGAACGTTAGTGCGGAAGA+TGG - chr1.2:2950907-2950926 None:intergenic 50.0%
AGTGAGGTGAGGGTAATAGC+AGG - chr1.2:2952139-2952158 None:intergenic 50.0%
CCACCAGTGAGTTCTGTAGA+AGG - chr1.2:2951050-2951069 None:intergenic 50.0%
CCTTCTACAGAACTCACTGG+TGG + chr1.2:2951047-2951066 MS.gene27361:CDS 50.0%
CTTCCGATCCGTAAAATCCC+TGG + chr1.2:2950774-2950793 MS.gene27361:CDS 50.0%
GACACCGAACTTGGACTTGA+CGG + chr1.2:2951314-2951333 MS.gene27361:CDS 50.0%
GAGATGGAGACTTGGAAAGG+TGG - chr1.2:2950735-2950754 None:intergenic 50.0%
GAGCAATTAGATCTGCTGGC+GGG + chr1.2:2951681-2951700 MS.gene27361:CDS 50.0%
GGAGCAATTAGATCTGCTGG+CGG + chr1.2:2951680-2951699 MS.gene27361:CDS 50.0%
GTGGTTGAGAGATGGAGACT+TGG - chr1.2:2950743-2950762 None:intergenic 50.0%
TAGTGCGGAAGATGGTTGAC+TGG - chr1.2:2950899-2950918 None:intergenic 50.0%
TGAGCTATGAAAGGACCAGG+AGG - chr1.2:2950927-2950946 None:intergenic 50.0%
TGGACCGTCAAGTCCAAGTT+CGG - chr1.2:2951321-2951340 None:intergenic 50.0%
TTGATGAAATGGATCGGGCG+CGG + chr1.2:2951617-2951636 MS.gene27361:CDS 50.0%
! CGGGGAAGCTTTTACCATCA+AGG - chr1.2:2950971-2950990 None:intergenic 50.0%
!! AGTCCAAGTTCGGTGTCAAC+AGG - chr1.2:2951311-2951330 None:intergenic 50.0%
!! CGTGATAAGGTGGTGGAAGA+GGG - chr1.2:2950663-2950682 None:intergenic 50.0%
!! GTCCAAGTTCGGTGTCAACA+GGG - chr1.2:2951310-2951329 None:intergenic 50.0%
!! TCGTGATAAGGTGGTGGAAG+AGG - chr1.2:2950664-2950683 None:intergenic 50.0%
!!! GTTTTGGTTCGGAGGGATCA+AGG - chr1.2:2951091-2951110 None:intergenic 50.0%
ACTGGGCCTACCGAAGTTTG+TGG + chr1.2:2951388-2951407 MS.gene27361:CDS 55.0%
CGATCTTCGATGCGTCGAAG+AGG - chr1.2:2950995-2951014 None:intergenic 55.0%
CTTCGATGCGTCGAAGAGGA+CGG - chr1.2:2950991-2951010 None:intergenic 55.0%
GACCAGGAGGAACGTTAGTG+CGG - chr1.2:2950914-2950933 None:intergenic 55.0%
GGAACGTCGTGATAAGGTGG+TGG - chr1.2:2950670-2950689 None:intergenic 55.0%
GGAGATTACTATGGCGGCCA+TGG + chr1.2:2951703-2951722 MS.gene27361:CDS 55.0%
GGAGGAACGTCGTGATAAGG+TGG - chr1.2:2950673-2950692 None:intergenic 55.0%
GGTAGGCCCAGTTTCAGAAC+TGG - chr1.2:2951380-2951399 None:intergenic 55.0%
GGTGGAGGAACGTCGTGATA+AGG - chr1.2:2950676-2950695 None:intergenic 55.0%
TGCTGGCGGGGAGATTACTA+TGG + chr1.2:2951694-2951713 MS.gene27361:CDS 55.0%
TGGCGGGGAGATTACTATGG+CGG + chr1.2:2951697-2951716 MS.gene27361:CDS 55.0%
TTCCGCACTAACGTTCCTCC+TGG + chr1.2:2950909-2950928 MS.gene27361:CDS 55.0%
TTCCTCGAGAGCAAATCCCG+AGG - chr1.2:2951498-2951517 None:intergenic 55.0%
TTCGATGCGTCGAAGAGGAC+GGG - chr1.2:2950990-2951009 None:intergenic 55.0%
! CTCGAGGAAGCAGAGCGTTT+AGG + chr1.2:2951509-2951528 MS.gene27361:CDS 55.0%
! TTCCTCGGGATTTGCTCTCG+AGG + chr1.2:2951493-2951512 MS.gene27361:CDS 55.0%
ATGAAATGGATCGGGCGCGG+TGG + chr1.2:2951620-2951639 MS.gene27361:CDS 60.0%
TCGATGCGTCGAAGAGGACG+GGG - chr1.2:2950989-2951008 None:intergenic 60.0%
GGATCGGGCGCGGTGGAGTG+AGG + chr1.2:2951627-2951646 MS.gene27361:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 2950603 2952177 2950603 ID=MS.gene27361
chr1.2 mRNA 2950603 2952177 2950603 ID=MS.gene27361.t1;Parent=MS.gene27361
chr1.2 exon 2950603 2952177 2950603 ID=MS.gene27361.t1.exon1;Parent=MS.gene27361.t1
chr1.2 CDS 2950603 2952177 2950603 ID=cds.MS.gene27361.t1;Parent=MS.gene27361.t1
Gene Sequence

>MS.gene27361

ATGGCTTCCTCTACTCTTTCAACTCCTTCTCCTAATCTCCTCAAACACCAAAAAAGACCCTCTTCCACCACCTTATCACGACGTTCCTCCACCTTTCTTCCACCTATAAGATCCTCAGTTTCAGAAAAACCACCTTTCCAAGTCTCCATCTCTCAACCACAAACAACCAAGCTTCCGATCCGTAAAATCCCTGGTGACTATGGCATCCCTTTCATAACACCCTACAAAGACCGTTTAGACTATTTCTACAACCAAGGTCGTGATGAATACTTCAAATCACGTATCCAAAAATACCAGTCAACCATCTTCCGCACTAACGTTCCTCCTGGTCCTTTCATAGCTCAAAACCCTAACGTAGTTGTACTCCTTGATGGTAAAAGCTTCCCCGTCCTCTTCGACGCATCGAAGATCGATAAAACCGATGTCTTCACAGGTACATACACACCTTCTACAGAACTCACTGGTGGTTATAGAGTTTTATCTTACCTTGATCCCTCCGAACCAAAACATGAACAGCTCAAGAAGTTGATGTTTTTTCTCCTTAAATCACGTAGTCGTCATGTTATTCCTGAGTTTCAGTCATGCTACAGAGAGTTTTTTAATGCTTTGGAGAATCAACTTGCTGAAAATGGTAACGCTAGTTTTGCTGATAATAATGATCAAGCAGCATTTAATTTCTTGAATCGTGCTTTGTTTGGTGTTAACCCTGTTGACACCGAACTTGGACTTGACGGTCCAAAAATGGTTCAGAAATGGGTTTTATTTCAGTTAGGTCCAGTTCTGAAACTGGGCCTACCGAAGTTTGTGGAAGATTCTATGATACATAATTTTCGTCTCCCATTTCGGCTCATTAAGAAAGATTACCAAAGACTTTATGATTTCTTTTATGCTTCCTCGGGATTTGCTCTCGAGGAAGCAGAGCGTTTAGGTGTTTCAAAAGAGGAGGCTTGTCATAATCTATTATTTGCAACGTGTTTTAATTCGTTTGGCGGGATTAAGCTGTTTTTTCCTAATTTGATGAAATGGATCGGGCGCGGTGGAGTGAGGTTGCATACAAAATTAGCGACGGAAATTAGAGGAGCAATTAGATCTGCTGGCGGGGAGATTACTATGGCGGCCATGGAGAATATGCCGTTGATGAAATCGGTGGTATACGAAGCTTTTCGTATTGATCCACCGGTTCCATTACAATTTGGAAGAGCAAAAAGGGACATGGTGATTGAAAATCATGAAAATGGTTTTTTGGTTAAGAAAGGTGAATTGTTGTTAGGATATCAACCTTTTGCTACTAAAGATCCTAAGATTTTTGATAGAGCAGAGGAATTTGTTGCAGATAGATTTGTTGGTGATGAAGGTGAGAAATTGTTGAAACATGTGCTTTGGTCTAATGGACCAGAATCTCAATCTCCAACTGTTGGGAATAAACAATGTGCTGGTAAAGATTTCACCACATTGATTTCAAGACTTTTGGTTGTTGAACTTTTTCTTAGGTATGATTCCTTTGAGATTCAAGTTGGAAATTCACCTTTAGGTCCTGCTATTACCCTCACCTCACTAAAGAGATCAAGCTTCTAG
Protein sequence

>MS.gene27361.t1

MASSTLSTPSPNLLKHQKRPSSTTLSRRSSTFLPPIRSSVSEKPPFQVSISQPQTTKLPIRKIPGDYGIPFITPYKDRLDYFYNQGRDEYFKSRIQKYQSTIFRTNVPPGPFIAQNPNVVVLLDGKSFPVLFDASKIDKTDVFTGTYTPSTELTGGYRVLSYLDPSEPKHEQLKKLMFFLLKSRSRHVIPEFQSCYREFFNALENQLAENGNASFADNNDQAAFNFLNRALFGVNPVDTELGLDGPKMVQKWVLFQLGPVLKLGLPKFVEDSMIHNFRLPFRLIKKDYQRLYDFFYASSGFALEEAERLGVSKEEACHNLLFATCFNSFGGIKLFFPNLMKWIGRGGVRLHTKLATEIRGAIRSAGGEITMAAMENMPLMKSVVYEAFRIDPPVPLQFGRAKRDMVIENHENGFLVKKGELLLGYQPFATKDPKIFDRAEEFVADRFVGDEGEKLLKHVLWSNGPESQSPTVGNKQCAGKDFTTLISRLLVVELFLRYDSFEIQVGNSPLGPAITLTSLKRSSF