AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27778


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27778.t1 MTR_7g074730 91.768 328 27 0 1 328 1 328 0.0 630
MS.gene27778.t1 MTR_7g074820 86.322 329 44 1 1 328 1 329 0.0 588
MS.gene27778.t1 MTR_7g074850 85.714 329 46 1 1 328 1 329 0.0 587
MS.gene27778.t1 MTR_7g074880 78.354 328 69 1 1 328 1 326 0.0 548
MS.gene27778.t1 MTR_7g074710 67.378 328 105 1 1 328 1 326 9.56e-169 472
MS.gene27778.t1 MTR_7g074870 74.913 287 70 1 42 328 4 288 2.22e-160 449
MS.gene27778.t1 MTR_4g023730 50.303 330 161 3 1 328 1 329 3.48e-109 321
MS.gene27778.t1 MTR_1g022440 45.483 321 172 3 8 328 8 325 1.01e-98 295
MS.gene27778.t1 MTR_1g022445 44.785 326 167 4 8 328 8 325 7.82e-94 282
MS.gene27778.t1 MTR_4g092080 39.820 334 189 5 1 326 7 336 1.07e-78 244
MS.gene27778.t1 MTR_4g081440 36.471 340 192 7 6 328 22 354 8.97e-72 226
MS.gene27778.t1 MTR_4g081440 36.471 340 191 8 6 328 18 349 2.02e-70 223
MS.gene27778.t1 MTR_2g101330 37.615 327 188 9 7 328 4 319 6.71e-66 211
MS.gene27778.t1 MTR_5g056600 35.185 324 197 8 9 328 5 319 2.18e-60 196
MS.gene27778.t1 MTR_8g062110 36.061 330 194 8 1 325 2 319 2.47e-59 193
MS.gene27778.t1 MTR_8g062110 35.758 330 195 7 1 325 11 328 2.69e-59 194
MS.gene27778.t1 MTR_8g062110 37.370 289 169 5 1 286 2 281 1.19e-57 188
MS.gene27778.t1 MTR_8g062110 37.722 281 164 4 1 278 2 274 1.22e-57 187
MS.gene27778.t1 MTR_8g062440 35.736 333 198 7 1 328 1 322 1.38e-57 189
MS.gene27778.t1 MTR_2g013230 34.943 352 193 9 1 328 1 340 1.67e-57 189
MS.gene27778.t1 MTR_3g005210 34.049 326 199 7 8 328 6 320 4.16e-57 187
MS.gene27778.t1 MTR_8g062440 35.736 333 197 8 1 328 1 321 8.39e-57 187
MS.gene27778.t1 MTR_8g062440 38.434 281 162 5 1 278 1 273 3.43e-55 183
MS.gene27778.t1 MTR_4g077130 34.627 335 198 11 1 327 1 322 1.19e-54 181
MS.gene27778.t1 MTR_2g013250 34.006 347 195 8 3 326 2 337 5.41e-53 177
MS.gene27778.t1 MTR_3g031650 34.743 331 190 11 8 328 5 319 1.16e-52 176
MS.gene27778.t1 MTR_3g005170 32.615 325 203 8 8 327 10 323 1.44e-52 176
MS.gene27778.t1 MTR_3g005170 34.909 275 169 5 8 279 10 277 2.82e-52 174
MS.gene27778.t1 MTR_5g072620 34.650 329 193 9 8 328 5 319 2.41e-50 170
MS.gene27778.t1 MTR_2g013260 35.429 350 190 11 1 326 1 338 8.52e-50 169
MS.gene27778.t1 MTR_2g104960 36.000 325 189 13 8 328 20 329 1.93e-49 168
MS.gene27778.t1 MTR_4g077100 34.507 284 173 7 1 279 3 278 1.39e-48 164
MS.gene27778.t1 MTR_4g077100 34.859 284 172 8 1 279 3 278 5.84e-48 164
MS.gene27778.t1 MTR_3g031650 34.783 276 166 7 8 278 5 271 1.86e-46 159
MS.gene27778.t1 MTR_7g117190 33.046 348 202 10 3 328 2 340 1.27e-45 158
MS.gene27778.t1 MTR_2g013260 36.213 301 161 8 1 278 1 293 2.17e-45 156
MS.gene27778.t1 MTR_4g009040 33.231 325 201 9 7 328 12 323 2.71e-45 157
MS.gene27778.t1 MTR_4g006940 32.923 325 199 12 8 328 17 326 1.04e-44 155
MS.gene27778.t1 MTR_4g009040 32.727 330 200 10 7 328 12 327 2.45e-44 154
MS.gene27778.t1 MTR_2g028620 32.565 347 190 14 2 328 4 326 4.50e-43 151
MS.gene27778.t1 MTR_4g006940 34.545 275 166 8 8 280 17 279 3.05e-42 148
MS.gene27778.t1 MTR_4g006940 34.545 275 166 8 8 280 17 279 3.05e-42 148
MS.gene27778.t1 MTR_7g117190 34.343 297 169 8 3 278 2 293 2.93e-41 146
MS.gene27778.t1 MTR_4g009690 32.000 325 205 9 7 328 12 323 3.64e-40 144
MS.gene27778.t1 MTR_2g028620 34.386 285 169 9 2 278 4 278 4.20e-40 143
MS.gene27778.t1 MTR_4g009690 32.000 325 204 9 7 328 12 322 5.15e-40 143
MS.gene27778.t1 MTR_3g005170 29.231 325 183 9 8 327 10 292 2.77e-37 135
MS.gene27778.t1 MTR_2g013230 31.225 253 139 8 100 328 9 250 6.81e-26 103
MS.gene27778.t1 MTR_0164s0070 38.281 128 77 2 7 133 4 130 1.09e-25 102
MS.gene27778.t1 MTR_8g062110 32.301 226 137 7 105 325 19 233 2.39e-25 102
MS.gene27778.t1 MTR_5g029990 27.143 280 165 9 8 275 12 264 4.18e-24 100
MS.gene27778.t1 MTR_8g062110 33.898 177 107 3 105 278 19 188 2.02e-23 95.9
MS.gene27778.t1 MTR_6g406250 27.509 269 165 11 2 255 47 300 7.43e-22 95.1
MS.gene27778.t1 MTR_7g074865 81.395 43 8 0 1 43 1 43 8.64e-20 82.4
MS.gene27778.t1 MTR_6g406250 27.826 230 136 8 2 216 47 261 1.61e-19 87.0
MS.gene27778.t1 MTR_7g117190 30.508 236 134 9 115 328 3 230 1.68e-18 83.6
MS.gene27778.t1 MTR_2g013260 31.873 251 136 10 100 326 28 267 2.51e-18 84.0
MS.gene27778.t1 MTR_3g101500 25.263 285 174 10 7 279 3 260 7.35e-13 68.9
MS.gene27778.t1 MTR_3g101500 25.197 254 157 8 7 253 3 230 1.04e-12 68.2
MS.gene27778.t1 MTR_3g101500 27.225 191 119 6 7 197 3 173 1.91e-12 66.2
MS.gene27778.t1 MTR_0685s0030 33.621 116 74 2 164 279 3 115 6.39e-12 62.0
MS.gene27778.t1 MTR_0685s0030 33.621 116 74 2 164 279 3 115 1.23e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27778.t1 AT2G45400 52.108 332 151 5 3 328 35 364 1.27e-111 328
MS.gene27778.t1 AT2G45400 52.817 284 127 4 3 280 35 317 2.78e-98 293
MS.gene27778.t1 AT5G42800 45.994 337 161 5 1 328 1 325 4.00e-97 292
MS.gene27778.t1 AT2G45400 51.877 293 134 4 41 328 17 307 1.23e-93 281
MS.gene27778.t1 AT4G35420 39.275 331 188 8 1 328 1 321 9.96e-80 246
MS.gene27778.t1 AT2G45400 54.545 220 94 3 3 216 35 254 3.66e-77 237
MS.gene27778.t1 AT1G61720 39.697 330 187 6 7 328 12 337 1.55e-74 233
MS.gene27778.t1 AT1G68540 36.728 324 192 8 10 328 6 321 7.01e-60 195
MS.gene27778.t1 AT2G02400 37.126 334 182 13 5 328 3 318 4.38e-58 190
MS.gene27778.t1 AT4G27250 31.250 336 210 4 2 320 7 338 8.98e-57 187
MS.gene27778.t1 AT4G27250 31.515 330 207 4 2 320 7 328 1.70e-56 187
MS.gene27778.t1 AT1G09480 36.111 324 195 7 8 328 8 322 1.99e-56 186
MS.gene27778.t1 AT5G58490 35.484 341 188 10 1 328 2 323 2.50e-56 186
MS.gene27778.t1 AT1G09490 37.276 279 165 5 8 283 8 279 2.93e-56 186
MS.gene27778.t1 AT1G09480 36.964 303 180 6 8 307 55 349 4.91e-56 186
MS.gene27778.t1 AT1G51410 32.523 329 210 6 3 328 4 323 1.74e-55 184
MS.gene27778.t1 AT1G25460 35.294 323 196 7 10 328 6 319 1.26e-54 181
MS.gene27778.t1 AT1G09510 36.760 321 191 8 8 325 8 319 5.32e-54 179
MS.gene27778.t1 AT5G19440 34.769 325 196 8 8 327 10 323 5.98e-54 179
MS.gene27778.t1 AT1G66800 37.226 274 164 5 1 274 1 266 1.91e-53 178
MS.gene27778.t1 AT1G76470 36.278 317 193 6 5 319 4 313 2.22e-52 176
MS.gene27778.t1 AT1G15950 36.391 327 185 14 8 328 13 322 2.64e-50 171
MS.gene27778.t1 AT1G15950 36.391 327 185 14 8 328 13 322 2.64e-50 171
MS.gene27778.t1 AT1G09500 35.273 275 167 5 8 278 8 275 3.23e-50 168
MS.gene27778.t1 AT1G09500 35.357 280 170 6 8 283 8 280 6.19e-50 169
MS.gene27778.t1 AT1G15950 36.102 313 182 10 8 316 13 311 3.93e-48 165
MS.gene27778.t1 AT1G15950 38.628 277 152 10 8 280 13 275 1.01e-46 159
MS.gene27778.t1 AT1G15950 38.489 278 153 10 8 281 13 276 1.08e-46 159
MS.gene27778.t1 AT1G15950 38.489 278 153 10 8 281 13 276 2.22e-46 159
MS.gene27778.t1 AT1G80820 34.862 327 190 14 8 328 8 317 5.62e-45 156
MS.gene27778.t1 AT2G33590 32.817 323 194 10 5 320 6 312 7.09e-45 156
MS.gene27778.t1 AT2G33600 35.625 320 191 11 4 320 5 312 1.71e-43 152
MS.gene27778.t1 AT1G80820 36.462 277 158 10 8 280 8 270 8.13e-42 146
MS.gene27778.t1 AT1G09490 33.730 252 158 4 35 283 3 248 4.60e-41 145
MS.gene27778.t1 AT1G09500 32.129 249 159 5 39 283 4 246 3.70e-35 129
MS.gene27778.t1 AT1G68540 33.937 221 135 6 112 328 1 214 2.35e-30 115
MS.gene27778.t1 AT2G23910 26.645 304 204 9 9 305 11 302 2.36e-28 112
MS.gene27778.t1 AT2G23910 26.224 286 194 8 1 281 1 274 6.20e-26 104
MS.gene27778.t1 AT2G23910 25.912 274 188 7 9 279 11 272 1.07e-25 103
MS.gene27778.t1 AT4G30470 25.987 304 203 9 9 304 11 300 2.76e-24 100
MS.gene27778.t1 AT1G15950 32.609 230 138 10 105 328 6 224 7.30e-22 93.2
MS.gene27778.t1 AT5G14700 28.364 275 162 10 8 263 55 313 1.81e-21 94.0
MS.gene27778.t1 AT5G14700 28.641 206 120 7 8 197 55 249 1.48e-18 84.7
MS.gene27778.t1 AT4G33360 27.304 293 168 11 2 279 9 271 2.20e-18 84.3
MS.gene27778.t1 AT2G23910 25.000 264 180 8 49 305 16 268 2.84e-18 83.6
MS.gene27778.t1 AT4G33360 26.712 292 171 10 2 279 9 271 2.91e-18 84.7
MS.gene27778.t1 AT4G33360 26.481 287 168 10 7 279 2 259 1.61e-17 82.4

Find 60 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCTGCATTGAAACTTTC+TGG 0.117961 7.3:+30582299 None:intergenic
AATTCACTAGCTTTCTTATT+TGG 0.119579 7.3:-30581879 MS.gene27778:intron
GAGAAAGCTGTTCTTGAATT+TGG 0.151014 7.3:-30581990 MS.gene27778:CDS
TTCATATTCTAGAGAGCTTA+TGG 0.191999 7.3:-30580353 MS.gene27778:intron
GAGCAATTGTACCTCCCTTT+TGG 0.241092 7.3:+30580554 None:intergenic
TTCATTTGCCCTAAGCTTCC+TGG 0.249284 7.3:-30581912 MS.gene27778:CDS
GGTAGCTAACATCTTTCTTT+TGG 0.266690 7.3:+30582381 None:intergenic
ACAGGAGGTACAGGATTTAT+TGG 0.272107 7.3:-30583273 MS.gene27778:CDS
AGAGAGCTTATGGGAGTTAA+AGG 0.273617 7.3:-30580343 MS.gene27778:CDS
AAAGGAAGAGTTTGTGTAAC+AGG 0.279492 7.3:-30583291 MS.gene27778:CDS
AGAACCATTGATGGAGCATT+AGG 0.319772 7.3:-30582197 MS.gene27778:CDS
AGGTAATGGATGAAAGTTAT+TGG 0.353449 7.3:-30582082 MS.gene27778:CDS
GAAGTTAAATGTGGAAGCTT+AGG 0.375861 7.3:+30580319 None:intergenic
GTACAGGATTTATTGGTTCA+TGG 0.376586 7.3:-30583266 MS.gene27778:CDS
ATTTGGAGAACAACATGGTT+TGG 0.377334 7.3:-30581973 MS.gene27778:CDS
AATTGAATGTTGCAAGGAAA+AGG 0.383505 7.3:-30580233 MS.gene27778:CDS
TCATATTCTAGAGAGCTTAT+GGG 0.397986 7.3:-30580352 MS.gene27778:intron
TTGCTGCATTGAAACTTTCT+GGG 0.400104 7.3:+30582300 None:intergenic
TAAACTGAGCCAGGAAGCTT+AGG 0.400902 7.3:+30581903 None:intergenic
TCGTTCTCTTCAAAATCAAT+TGG 0.419138 7.3:+30582242 None:intergenic
CAAGTTCATGTATAGCTTTG+AGG 0.424452 7.3:-30580272 MS.gene27778:CDS
CTTGAACATCCTAATCCAAA+AGG 0.439060 7.3:-30580569 MS.gene27778:CDS
ATTAAGAAACTCCTTGAAGA+TGG 0.440826 7.3:-30583240 MS.gene27778:CDS
TCATCAATAGTTGCAATGAA+TGG 0.444162 7.3:+30580530 None:intergenic
CGTCATCAACATGCACCATA+TGG 0.451162 7.3:+30580615 None:intergenic
AATTCCTAATGCTCCATCAA+TGG 0.462695 7.3:+30582193 None:intergenic
AGTTTCAATGCAGCAATTGA+AGG 0.465129 7.3:-30582293 MS.gene27778:CDS
GGCAGCCTCTCGTCTCCATA+TGG 0.466564 7.3:-30580630 MS.gene27778:CDS
TAACAGTGTAACCATCTTCA+AGG 0.473218 7.3:+30583229 None:intergenic
AAACAAAGAAGAAGAGGTAA+TGG 0.474396 7.3:-30582096 MS.gene27778:CDS
TCAAAGAAACTGATGGATGC+TGG 0.475623 7.3:-30580298 MS.gene27778:CDS
TAGCTTTGAGGAAATGTTTG+AGG 0.486426 7.3:-30580260 MS.gene27778:CDS
GTTTGTGTAACAGGAGGTAC+AGG 0.492728 7.3:-30583282 MS.gene27778:CDS
ATTGAATGTTGCAAGGAAAA+GGG 0.495429 7.3:-30580232 MS.gene27778:CDS
GCAGCAATTGAAGGGTGCAT+TGG 0.498418 7.3:-30582284 MS.gene27778:CDS
AGCTTTGAGGAAATGTTTGA+GGG 0.501932 7.3:-30580259 MS.gene27778:CDS
ACAGCATATGACCAAGCAAA+AGG 0.516501 7.3:+30582029 None:intergenic
GTGGTAATGGAAGAAGAGAA+AGG 0.524390 7.3:-30583309 None:intergenic
AGTGAATTATAAACTGAGCC+AGG 0.528708 7.3:+30581894 None:intergenic
TTTAACTTCAAAGAAACTGA+TGG 0.529224 7.3:-30580305 MS.gene27778:CDS
AGGAAGCTTAGGGCAAATGA+AGG 0.532077 7.3:+30581914 None:intergenic
AAGGGTCCAACAACAAAACT+TGG 0.536983 7.3:+30581933 None:intergenic
CTTGAATTTGGAGAACAACA+TGG 0.539504 7.3:-30581978 MS.gene27778:CDS
TTGTCAAAACAAAGAAGAAG+AGG 0.549520 7.3:-30582102 MS.gene27778:CDS
TTGAACATCCTAATCCAAAA+GGG 0.565903 7.3:-30580568 MS.gene27778:CDS
AAACTGAGCCAGGAAGCTTA+GGG 0.566911 7.3:+30581904 None:intergenic
GTTTCAATGCAGCAATTGAA+GGG 0.573950 7.3:-30582292 MS.gene27778:CDS
ACCTGGATTAGATCTAATAG+TGG 0.578445 7.3:+30583203 None:intergenic
TGTAGAACTCACTTGGATGT+TGG 0.581215 7.3:+30580464 None:intergenic
ACCACTATTAGATCTAATCC+AGG 0.581520 7.3:-30583204 MS.gene27778:intron
TGATATTGACAATAGTCCAT+TGG 0.582137 7.3:-30580651 MS.gene27778:CDS
TGGAGACGAGAGGCTGCCAA+TGG 0.597283 7.3:+30580635 None:intergenic
AGTTTCTTTGAAGTTAAATG+TGG 0.603651 7.3:+30580310 None:intergenic
GGGCGCAATTGAATGTTGCA+AGG 0.611585 7.3:-30580239 MS.gene27778:CDS
AACATCCTAATCCAAAAGGG+AGG 0.662110 7.3:-30580565 MS.gene27778:CDS
GGAAGCTTAGGGCAAATGAA+GGG 0.663348 7.3:+30581915 None:intergenic
AATCAATTGGAGTAGCTGTG+TGG 0.667434 7.3:+30582255 None:intergenic
GGAAGAGTTTGTGTAACAGG+AGG 0.678445 7.3:-30583288 MS.gene27778:CDS
ATGCACCATATGGAGACGAG+AGG 0.702189 7.3:+30580625 None:intergenic
ATGCATTTGGAAGATTTGTG+AGG 0.707774 7.3:+30582360 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAAAAATTGAAAAAT+TGG + chr7.3:30580631-30580650 None:intergenic 10.0%
!!! AAATATACTACAATTTTTTT+AGG + chr7.3:30582717-30582736 None:intergenic 10.0%
!!! AATATACTACAATTTTTTTA+GGG + chr7.3:30582716-30582735 None:intergenic 10.0%
!!! ATTTTATACAAAAAGTTTAA+AGG - chr7.3:30582312-30582331 MS.gene27778:CDS 10.0%
!!! TTTTTTTTTACTTTCAAAAA+AGG + chr7.3:30580350-30580369 None:intergenic 10.0%
!! AAAAAAAAGTAAACTCTTAT+AGG + chr7.3:30582788-30582807 None:intergenic 15.0%
!! AAAATCATGTATGTAAATAA+AGG + chr7.3:30582524-30582543 None:intergenic 15.0%
!! AACAAAAATGACATATAATT+TGG + chr7.3:30581024-30581043 None:intergenic 15.0%
!! AATGTAATTTAACAATGAAT+TGG + chr7.3:30580382-30580401 None:intergenic 15.0%
!! AATTAATGAAAATTAACAAG+TGG - chr7.3:30582834-30582853 MS.gene27778:intron 15.0%
!! AATTTAAATGAATGACAAAA+TGG - chr7.3:30582440-30582459 MS.gene27778:intron 15.0%
!! TTTAATTAAAAATGTAACAG+TGG + chr7.3:30580413-30580432 None:intergenic 15.0%
!!! AAAAAGATTAGTTATTTGAT+TGG - chr7.3:30580783-30580802 MS.gene27778:intron 15.0%
!!! AAAAGATTAGTTATTTGATT+GGG - chr7.3:30580784-30580803 MS.gene27778:intron 15.0%
!!! ACAATATAAATTTTAACCAT+CGG + chr7.3:30580914-30580933 None:intergenic 15.0%
!!! ATAAGAGTTTACTTTTTTTT+GGG - chr7.3:30582788-30582807 MS.gene27778:intron 15.0%
!!! ATATACTACAATTTTTTTAG+GGG + chr7.3:30582715-30582734 None:intergenic 15.0%
!!! TATAAGAGTTTACTTTTTTT+TGG - chr7.3:30582787-30582806 MS.gene27778:intron 15.0%
!!! TTTGTATTCAAAATTTTACT+AGG + chr7.3:30581774-30581793 None:intergenic 15.0%
!!! TTTTTTTAAGCTAAAAATTC+CGG - chr7.3:30580833-30580852 MS.gene27778:intron 15.0%
!! AAAGTTGTGTTATATATCAA+AGG + chr7.3:30580664-30580683 None:intergenic 20.0%
!! GATATATACTAATAAATGTG+AGG + chr7.3:30582215-30582234 None:intergenic 20.0%
!! TAATAAAAAGTCAACTTCAA+CGG - chr7.3:30582664-30582683 MS.gene27778:intron 20.0%
!! TATACAAAAAGTTTAAAGGA+AGG - chr7.3:30582316-30582335 MS.gene27778:CDS 20.0%
!!! AATTTTGACATAGTTTTTGA+AGG + chr7.3:30582493-30582512 None:intergenic 20.0%
!!! ACTTTTCTCGATAAAAATAA+TGG - chr7.3:30580732-30580751 MS.gene27778:intron 20.0%
!!! ATACTTTTTTTCTTTCTCAA+AGG - chr7.3:30581968-30581987 MS.gene27778:CDS 20.0%
!!! ATGTTGGTATTTTAAATGTA+GGG + chr7.3:30583048-30583067 None:intergenic 20.0%
!!! ATTTTGACATAGTTTTTGAA+GGG + chr7.3:30582492-30582511 None:intergenic 20.0%
!!! CAACTAGTACATTTTATTAA+TGG - chr7.3:30581991-30582010 MS.gene27778:CDS 20.0%
!!! GAAAAATTGGTTTCTAATTT+TGG + chr7.3:30580618-30580637 None:intergenic 20.0%
!!! TATACAACTATTTTTTTGAC+TGG + chr7.3:30582747-30582766 None:intergenic 20.0%
!!! TTTATGAGATGTGAATTTTT+GGG - chr7.3:30580962-30580981 MS.gene27778:intron 20.0%
!!! TTTTATGAGATGTGAATTTT+TGG - chr7.3:30580961-30580980 MS.gene27778:intron 20.0%
!!! TTTTCGCTAGTTATATTTAA+AGG + chr7.3:30580879-30580898 None:intergenic 20.0%
!!! TTTTTTAAGCTAAAAATTCC+GGG - chr7.3:30580834-30580853 MS.gene27778:intron 20.0%
! ACCAAAATTATGTAAAAAGC+AGG - chr7.3:30581121-30581140 MS.gene27778:intron 25.0%
! AGTTTAAAGGAAGGTAAAAT+TGG - chr7.3:30582325-30582344 MS.gene27778:CDS 25.0%
! ATTAATATGTAGAACTCACT+TGG + chr7.3:30583071-30583090 None:intergenic 25.0%
! ATTGTTTCAACCAAATTATG+TGG - chr7.3:30580929-30580948 MS.gene27778:intron 25.0%
! TATGAATAGAGATTTGAAGA+GGG + chr7.3:30580687-30580706 None:intergenic 25.0%
! TCCAATAAATACATATGACA+TGG - chr7.3:30582063-30582082 MS.gene27778:CDS 25.0%
! TCCATGTCATATGTATTTAT+TGG + chr7.3:30582067-30582086 None:intergenic 25.0%
! TTAAGTTATTAACATGCAGA+AGG + chr7.3:30583101-30583120 None:intergenic 25.0%
! TTAATTGATCAACAACAACA+TGG - chr7.3:30582622-30582641 MS.gene27778:intron 25.0%
! TTATGAATAGAGATTTGAAG+AGG + chr7.3:30580688-30580707 None:intergenic 25.0%
!! AGCAATGAATGTTTAAAACA+CGG + chr7.3:30581890-30581909 None:intergenic 25.0%
!! GTATTCAAAATTTTACTAGG+TGG + chr7.3:30581771-30581790 None:intergenic 25.0%
!! TTAAAGGAGATACCAAATTT+TGG + chr7.3:30580863-30580882 None:intergenic 25.0%
!! TTTAACTTCAAAGAAACTGA+TGG - chr7.3:30583220-30583239 MS.gene27778:CDS 25.0%
!!! AATTCACTAGCTTTCTTATT+TGG - chr7.3:30581646-30581665 MS.gene27778:intron 25.0%
!!! ACCATGTGATTTTAATACAA+CGG - chr7.3:30581806-30581825 MS.gene27778:intron 25.0%
!!! AGTTTCTTTGAAGTTAAATG+TGG + chr7.3:30583218-30583237 None:intergenic 25.0%
!!! GATGTTGGTATTTTAAATGT+AGG + chr7.3:30583049-30583068 None:intergenic 25.0%
!!! TATTTTAAATGTAGGGTACT+TGG + chr7.3:30583041-30583060 None:intergenic 25.0%
!!! TGTTGCTTTTCAAAGAATTT+TGG + chr7.3:30582188-30582207 None:intergenic 25.0%
!!! TGTTTTAAACATTCATTGCT+TGG - chr7.3:30581890-30581909 MS.gene27778:CDS 25.0%
!!! TTTTGACATAGTTTTTGAAG+GGG + chr7.3:30582491-30582510 None:intergenic 25.0%
AAACAAAGAAGAAGAGGTAA+TGG - chr7.3:30581429-30581448 MS.gene27778:intron 30.0%
AAATACCTTATATGTACTCG+TGG - chr7.3:30582133-30582152 MS.gene27778:CDS 30.0%
AATTGAATGTTGCAAGGAAA+AGG - chr7.3:30583292-30583311 MS.gene27778:CDS 30.0%
ACCGTTGTATTAAAATCACA+TGG + chr7.3:30581810-30581829 None:intergenic 30.0%
ATCAACACTATCGTTATGAT+GGG - chr7.3:30582238-30582257 MS.gene27778:CDS 30.0%
ATTAAGAAACTCCTTGAAGA+TGG - chr7.3:30580285-30580304 MS.gene27778:CDS 30.0%
ATTGAATGTTGCAAGGAAAA+GGG - chr7.3:30583293-30583312 MS.gene27778:CDS 30.0%
ATTTGTGAGACCACATAATT+TGG + chr7.3:30580942-30580961 None:intergenic 30.0%
TACTTTCAAAAAAGGATACC+TGG + chr7.3:30580342-30580361 None:intergenic 30.0%
TATCAACACTATCGTTATGA+TGG - chr7.3:30582237-30582256 MS.gene27778:CDS 30.0%
TCATCAATAGTTGCAATGAA+TGG + chr7.3:30582998-30583017 None:intergenic 30.0%
TCGTTCTCTTCAAAATCAAT+TGG + chr7.3:30581286-30581305 None:intergenic 30.0%
TGATATTGACAATAGTCCAT+TGG - chr7.3:30582874-30582893 MS.gene27778:intron 30.0%
TGATTAAAACCTCGTGAAAA+TGG - chr7.3:30582569-30582588 MS.gene27778:intron 30.0%
TTGAACATCCTAATCCAAAA+GGG - chr7.3:30582957-30582976 MS.gene27778:intron 30.0%
TTGTCAAAACAAAGAAGAAG+AGG - chr7.3:30581423-30581442 MS.gene27778:intron 30.0%
! GAATGTTTAAAACACGGATT+TGG + chr7.3:30581884-30581903 None:intergenic 30.0%
! TCATATTCTAGAGAGCTTAT+GGG - chr7.3:30583173-30583192 MS.gene27778:intron 30.0%
! TTCATATTCTAGAGAGCTTA+TGG - chr7.3:30583172-30583191 MS.gene27778:intron 30.0%
!! AGGTAATGGATGAAAGTTAT+TGG - chr7.3:30581443-30581462 MS.gene27778:intron 30.0%
!!! ACATGGAATTTTTTTGCATG+TGG - chr7.3:30582080-30582099 MS.gene27778:CDS 30.0%
!!! ACTATTTTTTTGACTGGACT+TGG + chr7.3:30582741-30582760 None:intergenic 30.0%
!!! CTAATACCAAGTTTTGTTGT+TGG - chr7.3:30581586-30581605 MS.gene27778:intron 30.0%
!!! GCCTGCTTTTTACATAATTT+TGG + chr7.3:30581125-30581144 None:intergenic 30.0%
AAAGGAAGAGTTTGTGTAAC+AGG - chr7.3:30580234-30580253 MS.gene27778:CDS 35.0%
AATTCCTAATGCTCCATCAA+TGG + chr7.3:30581335-30581354 None:intergenic 35.0%
ACCACTATTAGATCTAATCC+AGG - chr7.3:30580321-30580340 MS.gene27778:CDS 35.0%
AGTGAATTATAAACTGAGCC+AGG + chr7.3:30581634-30581653 None:intergenic 35.0%
AGTTTCAATGCAGCAATTGA+AGG - chr7.3:30581232-30581251 MS.gene27778:intron 35.0%
ATGCATTTGGAAGATTTGTG+AGG + chr7.3:30581168-30581187 None:intergenic 35.0%
ATTGCTGCATTGAAACTTTC+TGG + chr7.3:30581229-30581248 None:intergenic 35.0%
ATTTGGAGAACAACATGGTT+TGG - chr7.3:30581552-30581571 MS.gene27778:intron 35.0%
CTTGAACATCCTAATCCAAA+AGG - chr7.3:30582956-30582975 MS.gene27778:intron 35.0%
CTTGAATTTGGAGAACAACA+TGG - chr7.3:30581547-30581566 MS.gene27778:intron 35.0%
GAAGTTAAATGTGGAAGCTT+AGG + chr7.3:30583209-30583228 None:intergenic 35.0%
GAGAAAGCTGTTCTTGAATT+TGG - chr7.3:30581535-30581554 MS.gene27778:intron 35.0%
GTGACAAAAAGAACCATTGA+TGG - chr7.3:30581319-30581338 MS.gene27778:intron 35.0%
GTTTCAATGCAGCAATTGAA+GGG - chr7.3:30581233-30581252 MS.gene27778:intron 35.0%
TAACAGTGTAACCATCTTCA+AGG + chr7.3:30580299-30580318 None:intergenic 35.0%
TTGCTGCATTGAAACTTTCT+GGG + chr7.3:30581228-30581247 None:intergenic 35.0%
! AAAGAACATCCATTTTCACG+AGG + chr7.3:30582581-30582600 None:intergenic 35.0%
! ACCTGGATTAGATCTAATAG+TGG + chr7.3:30580325-30580344 None:intergenic 35.0%
! CAAGTTCATGTATAGCTTTG+AGG - chr7.3:30583253-30583272 MS.gene27778:CDS 35.0%
! CTTTTTGTCACAATTTCCTC+TGG + chr7.3:30581310-30581329 None:intergenic 35.0%
! GGTAGCTAACATCTTTCTTT+TGG + chr7.3:30581147-30581166 None:intergenic 35.0%
!! AGCTTTGAGGAAATGTTTGA+GGG - chr7.3:30583266-30583285 MS.gene27778:CDS 35.0%
!! GTACAGGATTTATTGGTTCA+TGG - chr7.3:30580259-30580278 MS.gene27778:CDS 35.0%
!! TAGCTTTGAGGAAATGTTTG+AGG - chr7.3:30583265-30583284 MS.gene27778:CDS 35.0%
!!! CTTAGCTTTTGAGATGCATT+TGG + chr7.3:30581181-30581200 None:intergenic 35.0%
AACATCCTAATCCAAAAGGG+AGG - chr7.3:30582960-30582979 MS.gene27778:intron 40.0%
AAGGGTCCAACAACAAAACT+TGG + chr7.3:30581595-30581614 None:intergenic 40.0%
AATCAATTGGAGTAGCTGTG+TGG + chr7.3:30581273-30581292 None:intergenic 40.0%
AATTCCGGGAGACCAAAATT+TGG - chr7.3:30580848-30580867 MS.gene27778:intron 40.0%
ACAGCATATGACCAAGCAAA+AGG + chr7.3:30581499-30581518 None:intergenic 40.0%
AGAGAGCTTATGGGAGTTAA+AGG - chr7.3:30583182-30583201 MS.gene27778:intron 40.0%
GTGCTTAATGCAATGATCGT+AGG - chr7.3:30581836-30581855 MS.gene27778:intron 40.0%
GTTAGCCACGAGTACATATA+AGG + chr7.3:30582141-30582160 None:intergenic 40.0%
TGGCTAACTTTCATCTGTGT+TGG - chr7.3:30582153-30582172 MS.gene27778:CDS 40.0%
TGTAGAACTCACTTGGATGT+TGG + chr7.3:30583064-30583083 None:intergenic 40.0%
! ACACGGATTTGGATTAGATG+CGG + chr7.3:30581873-30581892 None:intergenic 40.0%
! ACAGGAGGTACAGGATTTAT+TGG - chr7.3:30580252-30580271 MS.gene27778:CDS 40.0%
! AGAACCATTGATGGAGCATT+AGG - chr7.3:30581328-30581347 MS.gene27778:intron 40.0%
! TCAAAGAAACTGATGGATGC+TGG - chr7.3:30583227-30583246 MS.gene27778:CDS 40.0%
! TTGTACCTCCCTTTTGGATT+AGG + chr7.3:30582968-30582987 None:intergenic 40.0%
!! GATACCAAATTTTGGTCTCC+CGG + chr7.3:30580855-30580874 None:intergenic 40.0%
!! TTTTGAAGAGAACGAACCAG+AGG - chr7.3:30581291-30581310 MS.gene27778:intron 40.0%
!!! GAACTTTGAAGCCTTTTGCT+TGG - chr7.3:30581485-30581504 MS.gene27778:intron 40.0%
AAAAGACAGACACTCTCCGA+TGG - chr7.3:30580895-30580914 MS.gene27778:intron 45.0%
AAACTGAGCCAGGAAGCTTA+GGG + chr7.3:30581624-30581643 None:intergenic 45.0%
AAGTGGAAGTTGTTGCATGC+AGG - chr7.3:30582851-30582870 MS.gene27778:intron 45.0%
AGGAAGCTTAGGGCAAATGA+AGG + chr7.3:30581614-30581633 None:intergenic 45.0%
CGTCATCAACATGCACCATA+TGG + chr7.3:30582913-30582932 None:intergenic 45.0%
GCTGCTCTTCGAAGAATTGT+TGG - chr7.3:30582026-30582045 MS.gene27778:CDS 45.0%
GGAAGAGTTTGTGTAACAGG+AGG - chr7.3:30580237-30580256 MS.gene27778:CDS 45.0%
GGAAGCTTAGGGCAAATGAA+GGG + chr7.3:30581613-30581632 None:intergenic 45.0%
TAAACTGAGCCAGGAAGCTT+AGG + chr7.3:30581625-30581644 None:intergenic 45.0%
TTCATTTGCCCTAAGCTTCC+TGG - chr7.3:30581613-30581632 MS.gene27778:intron 45.0%
! GAGCAATTGTACCTCCCTTT+TGG + chr7.3:30582974-30582993 None:intergenic 45.0%
! GTTTGTGTAACAGGAGGTAC+AGG - chr7.3:30580243-30580262 MS.gene27778:CDS 45.0%
!!! TTAATTTAAAAATCTTTTAT+AGG + chr7.3:30582820-30582839 None:intergenic 5.0%
ATGCACCATATGGAGACGAG+AGG + chr7.3:30582903-30582922 None:intergenic 50.0%
GGGCGCAATTGAATGTTGCA+AGG - chr7.3:30583286-30583305 MS.gene27778:CDS 50.0%
! GCAGCAATTGAAGGGTGCAT+TGG - chr7.3:30581241-30581260 MS.gene27778:intron 50.0%
GGCAGCCTCTCGTCTCCATA+TGG - chr7.3:30582895-30582914 MS.gene27778:intron 60.0%
TGGAGACGAGAGGCTGCCAA+TGG + chr7.3:30582893-30582912 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 30580222 30583325 30580222 ID=MS.gene27778
chr7.3 mRNA 30580222 30583325 30580222 ID=MS.gene27778.t1;Parent=MS.gene27778
chr7.3 exon 30583205 30583325 30583205 ID=MS.gene27778.t1.exon1;Parent=MS.gene27778.t1
chr7.3 CDS 30583205 30583325 30583205 ID=cds.MS.gene27778.t1;Parent=MS.gene27778.t1
chr7.3 exon 30581880 30582404 30581880 ID=MS.gene27778.t1.exon2;Parent=MS.gene27778.t1
chr7.3 CDS 30581880 30582404 30581880 ID=cds.MS.gene27778.t1;Parent=MS.gene27778.t1
chr7.3 exon 30580476 30580674 30580476 ID=MS.gene27778.t1.exon3;Parent=MS.gene27778.t1
chr7.3 CDS 30580476 30580674 30580476 ID=cds.MS.gene27778.t1;Parent=MS.gene27778.t1
chr7.3 exon 30580222 30580363 30580222 ID=MS.gene27778.t1.exon4;Parent=MS.gene27778.t1
chr7.3 CDS 30580222 30580363 30580222 ID=cds.MS.gene27778.t1;Parent=MS.gene27778.t1
Gene Sequence

>MS.gene27778

ATGGAAGAAGAGAAAGGAAGAGTTTGTGTAACAGGAGGTACAGGATTTATTGGTTCATGGATTATTAAGAAACTCCTTGAAGATGGTTACACTGTTAATACCACTATTAGATCTAATCCAGGTATCCTTTTTTGAAAGTAAAAAAAAACTACAAACTCCAATTCATTGTTAAATTACATTTTTATAATCCACTGTTACATTTTTAATTAAAAAGAAATTAAAAAAATCAATTTCATTTAAATTACATTATTAATTCTTCTTATTGTAAAGTATCTCTATTGAATTAAGCTGTACTTCATATTTTTAAATTAACTCTTCTGCTAGAAAAAGTTAACAAAATATAAAAATAGTAAAAAATTGTCACTATTTTTTTTTTGCTAAGAATTAAAAAGACCAAAATTAGAAACCAATTTTTCAATTTTTTTTTTGTCTCTAATTTCCTTTGATATATAACACAACTTTCCCTCTTCAAATCTCTATTCATAACTAACTTAATCTATACGTCTATCTACTTTTCTCGATAAAAATAATGGAAGATATACAACTTTATTCGATTATTTAAAAAAGATTAGTTATTTGATTGGGTAGAGAGAGCAAGATTAGTTATTCAATTTTTTTAAGCTAAAAATTCCGGGAGACCAAAATTTGGTATCTCCTTTAAATATAACTAGCGAAAAGACAGACACTCTCCGATGGTTAAAATTTATATTGTTTCAACCAAATTATGTGGTCTCACAAATTTTATGAGATGTGAATTTTTGGGTTAGAAAGTGTGTGTCAATCTCTTACTAACTAGAAACCAAATTATATGTCATTTTTGTTTGTTTGTTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTATTATTTTCTTCATCATGTAATGATATTGATACATATGTGACCAAAATTATGTAAAAAGCAGGCCAAAAGAAAGATGTTAGCTACCTCACAAATCTTCCAAATGCATCTCAAAAGCTAAGATTTTTCAACGCTGATCTTAGCAACCCAGAAAGTTTCAATGCAGCAATTGAAGGGTGCATTGGAATATTCCACACAGCTACTCCAATTGATTTTGAAGAGAACGAACCAGAGGAAATTGTGACAAAAAGAACCATTGATGGAGCATTAGGAATTCTAAAAGCATGCAAAAATTCAAAAACAGTGAAGAGAGTTATTTACACTTCAAGTGCTTCTGCTGTTTATTGTCAAAACAAAGAAGAAGAGGTAATGGATGAAAGTTATTGGAGTGATGTGAATATTCTTAGAACTTTGAAGCCTTTTGCTTGGTCATATGCTGTTTCTAAGACACTAGCTGAGAAAGCTGTTCTTGAATTTGGAGAACAACATGGTTTGGATATTGTGACTCTAATACCAAGTTTTGTTGTTGGACCCTTCATTTGCCCTAAGCTTCCTGGCTCAGTTTATAATTCACTAGCTTTCTTATTTGGTGAGTGAAGTTTCTTATAATCTCTTGATCTTGTTTGCAGTAAAAAATACATCAAATTATGTTAGCACATCTTGATACTTTGTTTTGTTTTCTAATTTCTCCACCTAGTAAAATTTTGAATACAAACTTAAAATATCAACCATGTGATTTTAATACAACGGTCAAGATGTGCTTAATGCAATGATCGTAGGTTATATTGTGACCGCATCTAATCCAAATCCGTGTTTTAAACATTCATTGCTTGGAAATTGATTTTAGTTGATCAAACTATTGATAGCAAAAACATAAGTTTTGTTACAAATACTTTTTTTCTTTCTCAAAGGCAACTAGTACATTTTATTAATGGTTTTTTTTTTAAGCTGCTCTTCGAAGAATTGTTGGTAATTTACGCAACATCCAATAAATACATATGACATGGAATTTTTTTGCATGTGGTGTAAAAATTACTTTATTGATTGATAAAAGAAATACCTTATATGTACTCGTGGCTAACTTTCATCTGTGTTGGATAAATTATCCAAAATTCTTTGAAAAGCAACATATACCTCACATTTATTAGTATATATCTTTATCAACACTATCGTTATGATGGGTGCTCACATGCTTGTTTATTTTTCTTTGACAAAAATAATTTAAATTATAAAATTTTATACAAAAAGTTTAAAGGAAGGTAAAATTGGAAGAAAAAAAAATTACACAAAAACTTGATGTCATGTGTAGATGTTTTTAATTTTAAAAATCATTTGTTTGAATAAAAAGTGATAAATATAATAATTTAAATGAATGACAAAATGGAAAGAAAACAACTATGTCAAAATTTCCCCTTCAAAAACTATGTCAAAATTTTGTATCTCCTTTATTTACATACATGATTTTCAATGTTTCAATCACTGTATGTTGATGATTAAAACCTCGTGAAAATGGATGTTCTTTCAATAGACTTTTTTACTTTTGTTAATTGATCAACAACAACATGGTTAATTTTTAGTTATATAGTAATAAAAAGTCAACTTCAACGGTGAGAATAATAGTAGTATATTTTCTCCCCTAAAAAAATTGTAGTATATTTTCCAAGTCCAGTCAAAAAAATAGTTGTATATTTAGTCAGAAACATAGTCCTATAAGAGTTTACTTTTTTTTGGGTCTAGTCCTATAAAAGATTTTTAAATTAATGAAAATTAACAAGTGGAAGTTGTTGCATGCAGGTGATATTGACAATAGTCCATTGGCAGCCTCTCGTCTCCATATGGTGCATGTTGATGACGTTGCAAGAGCACATATATTCTTACTTGAACATCCTAATCCAAAAGGGAGGTACAATTGCTCACCATTCATTGCAACTATTGATGAAATAGTTCACACTGTTTCTTCCAAGTACCCTACATTTAAAATACCAACATCCAAGTGAGTTCTACATATTAATTAGTTATCCTTCTGCATGTTAATAACTTAACTAAATTTATGCAATCTTGCTTTTATTGTTACTAATATTTTTCAATTTATTTTCATATTCTAGAGAGCTTATGGGAGTTAAAGGTCCTAAGCTTCCACATTTAACTTCAAAGAAACTGATGGATGCTGGATTCAAGTTCATGTATAGCTTTGAGGAAATGTTTGAGGGCGCAATTGAATGTTGCAAGGAAAAGGGTTATCTTTGA

Protein sequence

>MS.gene27778.t1

MEEEKGRVCVTGGTGFIGSWIIKKLLEDGYTVNTTIRSNPGQKKDVSYLTNLPNASQKLRFFNADLSNPESFNAAIEGCIGIFHTATPIDFEENEPEEIVTKRTIDGALGILKACKNSKTVKRVIYTSSASAVYCQNKEEEVMDESYWSDVNILRTLKPFAWSYAVSKTLAEKAVLEFGEQHGLDIVTLIPSFVVGPFICPKLPGSVYNSLAFLFGDIDNSPLAASRLHMVHVDDVARAHIFLLEHPNPKGRYNCSPFIATIDEIVHTVSSKYPTFKIPTSKELMGVKGPKLPHLTSKKLMDAGFKFMYSFEEMFEGAIECCKEKGYL