Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28203.t1 | RHN48529.1 | 79.5 | 438 | 21 | 2 | 1 | 369 | 1 | 438 | 3.40E-189 | 671.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28203.t1 | Q94HW2 | 24.2 | 190 | 118 | 4 | 27 | 203 | 26 | 202 | 9.4e-07 | 56.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28203.t1 | A0A396H5H6 | 79.5 | 438 | 21 | 2 | 1 | 369 | 1 | 438 | 2.4e-189 | 671.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049262 | MS.gene28203 | 0.813572 | 2.39E-51 | -1.69E-46 |
| MS.gene049853 | MS.gene28203 | 0.834599 | 2.73E-56 | -1.69E-46 |
| MS.gene055017 | MS.gene28203 | 0.83506 | 2.09E-56 | -1.69E-46 |
| MS.gene055056 | MS.gene28203 | 0.819393 | 1.19E-52 | -1.69E-46 |
| MS.gene055058 | MS.gene28203 | 0.817609 | 3.02E-52 | -1.69E-46 |
| MS.gene058515 | MS.gene28203 | 0.816624 | 5.03E-52 | -1.69E-46 |
| MS.gene058580 | MS.gene28203 | 0.802853 | 4.61E-49 | -1.69E-46 |
| MS.gene059276 | MS.gene28203 | 0.82121 | 4.56E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28203.t1 | AT1G21280 | 33.152 | 184 | 108 | 5 | 31 | 203 | 41 | 220 | 1.58e-25 | 105 |
Find 132 sgRNAs with CRISPR-Local
Find 355 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAAATTTGTTGCCGAATT+TGG | 0.144710 | 3.3:+17166485 | None:intergenic |
| TCTCTTCACCTCAACATTAT+TGG | 0.176432 | 3.3:+17165972 | None:intergenic |
| CGTTTCCACAATGGGAGTTT+TGG | 0.188134 | 3.3:+17166649 | None:intergenic |
| ATAAAATTCACATGAAATTT+AGG | 0.194216 | 3.3:+17165613 | None:intergenic |
| GTTACAACTTTCTTATTTCT+AGG | 0.242790 | 3.3:+17165994 | None:intergenic |
| TCTGGCGAAAGCTTATTTAA+TGG | 0.253082 | 3.3:+17163352 | None:intergenic |
| GGGCCTGTTGTATTTGGTTT+TGG | 0.268105 | 3.3:+17163098 | None:intergenic |
| GAGACAAATCTGATGATAAT+TGG | 0.270056 | 3.3:+17165656 | None:intergenic |
| GAAGGATTAATGGTTGTATT+TGG | 0.272462 | 3.3:+17163244 | None:intergenic |
| ATGCATATTCAACACTATAT+TGG | 0.274905 | 3.3:-17165807 | MS.gene28203:CDS |
| ACACAAAACTCAAGAGTCTT+TGG | 0.275344 | 3.3:-17166426 | MS.gene28203:CDS |
| TCATCAGATTTGTCTCTTGA+TGG | 0.290030 | 3.3:-17165649 | MS.gene28203:CDS |
| CTGGCGAAAGCTTATTTAAT+GGG | 0.298972 | 3.3:+17163353 | None:intergenic |
| TATTTGAATGGATTCCCTAT+TGG | 0.303708 | 3.3:-17166045 | MS.gene28203:CDS |
| TTGCCGAATTTGGTAGATTC+TGG | 0.307313 | 3.3:+17166495 | None:intergenic |
| CCGTGCCATGTGTGTCCAAT+AGG | 0.329093 | 3.3:+17166030 | None:intergenic |
| GTGTGCTGAAGTGGTCTCTA+TGG | 0.336664 | 3.3:+17163120 | None:intergenic |
| AGCTGTGTGAGAAGGATTAA+TGG | 0.350331 | 3.3:+17163234 | None:intergenic |
| GACTTTGTTGGACTACCTAA+TGG | 0.352887 | 3.3:-17165712 | MS.gene28203:CDS |
| GAAGGTAATGCAATTTCTAA+TGG | 0.357141 | 3.3:-17166323 | MS.gene28203:CDS |
| TTAATGGGAATATGTGTTCA+TGG | 0.361119 | 3.3:+17163368 | None:intergenic |
| ATGGATGAGGGCTGCAATAT+AGG | 0.363772 | 3.3:+17163139 | None:intergenic |
| GATCGATGCTATTATTTGAA+TGG | 0.376133 | 3.3:-17166057 | MS.gene28203:CDS |
| AAGGTAATGCAATTTCTAAT+GGG | 0.376573 | 3.3:-17166322 | MS.gene28203:CDS |
| TGAGGAATACAGGCAGATTA+TGG | 0.384360 | 3.3:-17165917 | MS.gene28203:CDS |
| AGGAACATGTGATGGGTTCC+TGG | 0.388374 | 3.3:+17166386 | None:intergenic |
| GTCAGGTATAGGTGTTGGGC+TGG | 0.391440 | 3.3:+17163207 | None:intergenic |
| CTGATACAGCAGCAGCAGTT+TGG | 0.397108 | 3.3:-17166555 | MS.gene28203:CDS |
| ACACCAAAACCAAATACAAC+AGG | 0.398934 | 3.3:-17163101 | MS.gene28203:CDS |
| CACAAAACTCAAGAGTCTTT+GGG | 0.404850 | 3.3:-17166425 | MS.gene28203:CDS |
| AGTCCAGAATCTACCAAATT+CGG | 0.406350 | 3.3:-17166498 | MS.gene28203:CDS |
| GGCAAGATGTGGCGGAGGTC+GGG | 0.415773 | 3.3:+17163046 | None:intergenic |
| TAAGAGGAGGTTCCACTTTG+TGG | 0.417769 | 3.3:+17166129 | None:intergenic |
| CATTGCAACGTTTCCACAAT+GGG | 0.422099 | 3.3:+17166641 | None:intergenic |
| TTGCAAGTCTTTGTGATAAG+AGG | 0.422636 | 3.3:+17166113 | None:intergenic |
| GTTAAATCAGGCTCAGGAAG+AGG | 0.430327 | 3.3:+17163280 | None:intergenic |
| ATGATCTATGTCGGGTTCGA+TGG | 0.434373 | 3.3:+17166591 | None:intergenic |
| TGAGATGAACGACGAAGCTC+GGG | 0.439080 | 3.3:+17163074 | None:intergenic |
| GCCTTTGCACCTTGCAATGT+TGG | 0.443618 | 3.3:+17166859 | None:intergenic |
| AAGTGTGAATTGGTTAAATC+AGG | 0.444311 | 3.3:+17163268 | None:intergenic |
| GATAATTACCATTTCTGTTG+TGG | 0.444822 | 3.3:+17165887 | None:intergenic |
| ACTTACCATGCTGCTGTCCT+AGG | 0.447340 | 3.3:-17163014 | None:intergenic |
| TGTATTTGGCAAGTGTGAAT+TGG | 0.449030 | 3.3:+17163258 | None:intergenic |
| ACATCTTACAGTAATAATAT+AGG | 0.454994 | 3.3:-17165835 | MS.gene28203:CDS |
| AAGGCACCTCATGACTTTGT+TGG | 0.460510 | 3.3:-17165724 | MS.gene28203:CDS |
| TATTCCTCAGCTGTAAAAGT+TGG | 0.464379 | 3.3:+17165931 | None:intergenic |
| TGCAATATAGGAGGAGCAGA+TGG | 0.468051 | 3.3:+17163151 | None:intergenic |
| CGTGCCATGTGTGTCCAATA+GGG | 0.468349 | 3.3:+17166031 | None:intergenic |
| CAGCCACTTGCAAATGCATC+AGG | 0.469647 | 3.3:-17165865 | MS.gene28203:CDS |
| GCTATGCTCCACAACAGAAA+TGG | 0.471084 | 3.3:-17165895 | MS.gene28203:CDS |
| TCAGGCTCAGGAAGAGGGAT+TGG | 0.477900 | 3.3:+17163286 | None:intergenic |
| TAATGTCAGGTATAGGTGTT+GGG | 0.479015 | 3.3:+17163203 | None:intergenic |
| GATAAAATAATGTCAGGTAT+AGG | 0.484742 | 3.3:+17163196 | None:intergenic |
| TAGGAGGAGCAGATGGGAGT+GGG | 0.485464 | 3.3:+17163158 | None:intergenic |
| TGTAAAAGTTGGGCTGTCAT+TGG | 0.486944 | 3.3:+17165942 | None:intergenic |
| CGGCAAGATGTGGCGGAGGT+CGG | 0.487313 | 3.3:+17163045 | None:intergenic |
| CTATATTGGATTGTGGATAG+TGG | 0.496693 | 3.3:-17165793 | MS.gene28203:CDS |
| AGGGATTGGATTATCAAGAA+GGG | 0.498924 | 3.3:+17163300 | None:intergenic |
| TCAGGTATAGGTGTTGGGCT+GGG | 0.500477 | 3.3:+17163208 | None:intergenic |
| CTAGTTAACCAACCTCTGAA+TGG | 0.505656 | 3.3:-17166775 | MS.gene28203:intron |
| GTGAGATGAACGACGAAGCT+CGG | 0.512313 | 3.3:+17163073 | None:intergenic |
| TGAAGTGGTCTCTATGGATG+AGG | 0.512982 | 3.3:+17163126 | None:intergenic |
| CTCCTTGAGAGAATCTATCA+TGG | 0.517191 | 3.3:+17166524 | None:intergenic |
| GTGGAAACGTTGCAATGATC+TGG | 0.518248 | 3.3:-17166635 | MS.gene28203:CDS |
| ATTCCTCAGCTGTAAAAGTT+GGG | 0.519236 | 3.3:+17165932 | None:intergenic |
| AGATGGGAGTGGGGACATAG+AGG | 0.521036 | 3.3:+17163168 | None:intergenic |
| ATGGACGTAACTACGGTGAA+TGG | 0.523438 | 3.3:-17166756 | MS.gene28203:CDS |
| AAAGCTGCCATTGAAAACAT+TGG | 0.525906 | 3.3:-17165685 | MS.gene28203:CDS |
| ATAGGAGGAGCAGATGGGAG+TGG | 0.526240 | 3.3:+17163157 | None:intergenic |
| TACCGTGTTTACGATCTTGA+AGG | 0.527474 | 3.3:-17163424 | MS.gene28203:CDS |
| GATGGGAGTGGGGACATAGA+GGG | 0.530172 | 3.3:+17163169 | None:intergenic |
| ATAATGTCAGGTATAGGTGT+TGG | 0.531839 | 3.3:+17163202 | None:intergenic |
| AGTTACGTCCATTCAGAGGT+TGG | 0.533757 | 3.3:+17166767 | None:intergenic |
| TGTAGTAATCAGAGATTGAG+AGG | 0.533983 | 3.3:+17166446 | None:intergenic |
| CCTCTGAATGGACGTAACTA+CGG | 0.537040 | 3.3:-17166763 | MS.gene28203:CDS |
| GAGGTTCCACTTTGTGGCAT+CGG | 0.540533 | 3.3:+17166135 | None:intergenic |
| TGTCGGGTTCGATGGAATGA+AGG | 0.540575 | 3.3:+17166599 | None:intergenic |
| AACAAACTCGGTCTGATCGA+TGG | 0.542206 | 3.3:-17166700 | MS.gene28203:CDS |
| TTATCAAGAAGGGGTAGGAC+AGG | 0.542460 | 3.3:+17163310 | None:intergenic |
| GGGTCAGATAAAATAATGTC+AGG | 0.542584 | 3.3:+17163190 | None:intergenic |
| TTCAACACTATATTGGATTG+TGG | 0.542950 | 3.3:-17165800 | MS.gene28203:CDS |
| CAAGTCTTTGTGATAAGAGG+AGG | 0.547425 | 3.3:+17166116 | None:intergenic |
| AACTTTCTTCAACATGTCGC+AGG | 0.547667 | 3.3:+17166366 | None:intergenic |
| CATGTCGCAGGAACATGTGA+TGG | 0.549137 | 3.3:+17166378 | None:intergenic |
| AATTACGCTATGATCTATGT+CGG | 0.550153 | 3.3:+17166582 | None:intergenic |
| GCTTAACGAATCTTATTCGC+AGG | 0.550481 | 3.3:-17166299 | MS.gene28203:intron |
| GAGGGATTGGATTATCAAGA+AGG | 0.552958 | 3.3:+17163299 | None:intergenic |
| GGCTGACAAAACCACTGCTA+CGG | 0.557763 | 3.3:-17166911 | MS.gene28203:CDS |
| GGGATTGGATTATCAAGAAG+GGG | 0.562234 | 3.3:+17163301 | None:intergenic |
| CGCACACCGATGCCACAAAG+TGG | 0.562581 | 3.3:-17166141 | MS.gene28203:CDS |
| CTGGGTTGAGCTGTGTGAGA+AGG | 0.564399 | 3.3:+17163226 | None:intergenic |
| ATTACGCTATGATCTATGTC+GGG | 0.565729 | 3.3:+17166583 | None:intergenic |
| GAATTGGTTAAATCAGGCTC+AGG | 0.569231 | 3.3:+17163274 | None:intergenic |
| CAAATTTCTGAATGTCGTCA+AGG | 0.569421 | 3.3:-17166472 | MS.gene28203:CDS |
| AAGAAGGGGTAGGACAGGAT+TGG | 0.576478 | 3.3:+17163315 | None:intergenic |
| TGGAACGGTGAAAGCGTCGT+TGG | 0.579483 | 3.3:-17166680 | MS.gene28203:CDS |
| AGGAGGAGCAGATGGGAGTG+GGG | 0.581318 | 3.3:+17163159 | None:intergenic |
| TTAAATCAGGCTCAGGAAGA+GGG | 0.581657 | 3.3:+17163281 | None:intergenic |
| GGATGAATTAGAATCTTACC+AGG | 0.581667 | 3.3:-17166404 | MS.gene28203:CDS |
| CCTATTGGACACACATGGCA+CGG | 0.583214 | 3.3:-17166030 | MS.gene28203:CDS |
| CAATGCACTCACTATGAACA+AGG | 0.587228 | 3.3:-17166093 | MS.gene28203:CDS |
| CCGTAGTTACGTCCATTCAG+AGG | 0.595079 | 3.3:+17166763 | None:intergenic |
| GATGAACGACGAAGCTCGGG+GGG | 0.597498 | 3.3:+17163077 | None:intergenic |
| TTGAAATCGGCAAGATGTGG+CGG | 0.602368 | 3.3:+17163038 | None:intergenic |
| GCAATGATCTGGTGTTAACA+TGG | 0.603908 | 3.3:-17166624 | MS.gene28203:CDS |
| AAATCGGCAAGATGTGGCGG+AGG | 0.604189 | 3.3:+17163041 | None:intergenic |
| ATGGGAGTGGGGACATAGAG+GGG | 0.604631 | 3.3:+17163170 | None:intergenic |
| GAAGTGGTCTCTATGGATGA+GGG | 0.604855 | 3.3:+17163127 | None:intergenic |
| AGGTAATGCAATTTCTAATG+GGG | 0.605522 | 3.3:-17166321 | MS.gene28203:CDS |
| TCATTGCAACGTTTCCACAA+TGG | 0.606090 | 3.3:+17166640 | None:intergenic |
| GCAATATAGGAGGAGCAGAT+GGG | 0.607077 | 3.3:+17163152 | None:intergenic |
| ATACCTGATGCATTTGCAAG+TGG | 0.608923 | 3.3:+17165862 | None:intergenic |
| CTATTGGACACACATGGCAC+GGG | 0.612842 | 3.3:-17166029 | MS.gene28203:CDS |
| ATGTCGCAGGAACATGTGAT+GGG | 0.616751 | 3.3:+17166379 | None:intergenic |
| AGTTGTAACCAATAATGTTG+AGG | 0.621396 | 3.3:-17165980 | MS.gene28203:CDS |
| CTCCATGATAGATTCTCTCA+AGG | 0.625006 | 3.3:-17166526 | MS.gene28203:CDS |
| GATGAGGGCTGCAATATAGG+AGG | 0.635222 | 3.3:+17163142 | None:intergenic |
| TTGGATTATCAAGAAGGGGT+AGG | 0.635939 | 3.3:+17163305 | None:intergenic |
| ACGACCCAAAACTCCCATTG+TGG | 0.653588 | 3.3:-17166654 | MS.gene28203:CDS |
| TACCTTCAAGATCGTAAACA+CGG | 0.653812 | 3.3:+17163422 | None:intergenic |
| GAAGAAAGTTGCTGTCAGAG+AGG | 0.668523 | 3.3:-17166353 | MS.gene28203:CDS |
| ACTCGGTCTGATCGATGGAA+CGG | 0.670633 | 3.3:-17166695 | MS.gene28203:CDS |
| GATTCCCTATTGGACACACA+TGG | 0.676327 | 3.3:-17166035 | MS.gene28203:CDS |
| GAGATGAACGACGAAGCTCG+GGG | 0.676511 | 3.3:+17163075 | None:intergenic |
| AGATGAACGACGAAGCTCGG+GGG | 0.685186 | 3.3:+17163076 | None:intergenic |
| GGTAGTCCAACAAAGTCATG+AGG | 0.685394 | 3.3:+17165718 | None:intergenic |
| TGAACAAGGAGGACACTCAG+TGG | 0.687215 | 3.3:-17166079 | MS.gene28203:CDS |
| TATGGCCTAGGACAGCAGCA+TGG | 0.703881 | 3.3:+17163009 | None:intergenic |
| GTAGTAATCAGAGATTGAGA+GGG | 0.707367 | 3.3:+17166447 | None:intergenic |
| TGCACTCACTATGAACAAGG+AGG | 0.728014 | 3.3:-17166090 | MS.gene28203:CDS |
| ATGAACGACGAAGCTCGGGG+GGG | 0.748131 | 3.3:+17163078 | None:intergenic |
| CTTGAGAGAATCTATCATGG+AGG | 0.752829 | 3.3:+17166527 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCATCAATAAATAAAATT+AGG | + | chr3.3:17165064-17165083 | None:intergenic | 10.0% |
| !!! | AAAAAGATTTCAATAAATTT+TGG | + | chr3.3:17166040-17166059 | None:intergenic | 10.0% |
| !!! | AAAAGATTTCAATAAATTTT+GGG | + | chr3.3:17166039-17166058 | None:intergenic | 10.0% |
| !! | AAAATTAAACAAAGTAAAGA+TGG | + | chr3.3:17165483-17165502 | None:intergenic | 15.0% |
| !! | ATAAAATTCACATGAAATTT+AGG | + | chr3.3:17164318-17164337 | None:intergenic | 15.0% |
| !!! | ATAATCAAATTTGTTATTAG+GGG | + | chr3.3:17166436-17166455 | None:intergenic | 15.0% |
| !!! | GATAATCAAATTTGTTATTA+GGG | + | chr3.3:17166437-17166456 | None:intergenic | 15.0% |
| !! | ACATCTTACAGTAATAATAT+AGG | - | chr3.3:17164093-17164112 | MS.gene28203:intron | 20.0% |
| !! | ATTTAATCCATTGTGATATT+TGG | - | chr3.3:17165907-17165926 | MS.gene28203:CDS | 20.0% |
| !! | TAAACCGTAAATCAATTTAA+AGG | + | chr3.3:17165140-17165159 | None:intergenic | 20.0% |
| !! | TAAATAGACAAGTGAAAAAT+CGG | + | chr3.3:17164814-17164833 | None:intergenic | 20.0% |
| !! | TCAATTCAATAATGAGAATT+AGG | - | chr3.3:17165391-17165410 | MS.gene28203:intron | 20.0% |
| !! | TCTAATCTTAAAATTCACTA+AGG | - | chr3.3:17165280-17165299 | MS.gene28203:intron | 20.0% |
| !! | TTAAGACTTAATTGAACAAA+AGG | + | chr3.3:17165535-17165554 | None:intergenic | 20.0% |
| !! | TTAGAATTAAAGACAATTTC+TGG | + | chr3.3:17165804-17165823 | None:intergenic | 20.0% |
| !! | TTTAATCCATTGTGATATTT+GGG | - | chr3.3:17165908-17165927 | MS.gene28203:CDS | 20.0% |
| !!! | ATAGTTTTTATTGAACTTGA+AGG | + | chr3.3:17165876-17165895 | None:intergenic | 20.0% |
| !!! | ATTGAAATCTTTTTTTGCTT+GGG | - | chr3.3:17166046-17166065 | MS.gene28203:CDS | 20.0% |
| !!! | CGATAATCAAATTTGTTATT+AGG | + | chr3.3:17166438-17166457 | None:intergenic | 20.0% |
| !!! | TAAAGTATTTTTTACTTCTC+AGG | - | chr3.3:17166527-17166546 | MS.gene28203:CDS | 20.0% |
| !!! | TATTGAAATCTTTTTTTGCT+TGG | - | chr3.3:17166045-17166064 | MS.gene28203:CDS | 20.0% |
| ! | AAATAGACAAGTGAAAAATC+GGG | + | chr3.3:17164813-17164832 | None:intergenic | 25.0% |
| ! | AAGGTAATGCAATTTCTAAT+GGG | - | chr3.3:17163606-17163625 | MS.gene28203:intron | 25.0% |
| ! | AATAACAATCATGTTCATCT+AGG | + | chr3.3:17165038-17165057 | None:intergenic | 25.0% |
| ! | ACCTACTCACAATAAAAATA+AGG | - | chr3.3:17164185-17164204 | MS.gene28203:intron | 25.0% |
| ! | ATAACAATCATGTTCATCTA+GGG | + | chr3.3:17165037-17165056 | None:intergenic | 25.0% |
| ! | ATGCATATTCAACACTATAT+TGG | - | chr3.3:17164121-17164140 | MS.gene28203:intron | 25.0% |
| ! | GATAAAATAATGTCAGGTAT+AGG | + | chr3.3:17166735-17166754 | None:intergenic | 25.0% |
| ! | TAAAATCATCAACAATGGTA+AGG | + | chr3.3:17165974-17165993 | None:intergenic | 25.0% |
| ! | TATCTATTCCTAGATTACAA+AGG | + | chr3.3:17165214-17165233 | None:intergenic | 25.0% |
| ! | TTAAAATTCACTAAGGAATG+AGG | - | chr3.3:17165287-17165306 | MS.gene28203:intron | 25.0% |
| ! | TTAATCCATTGTGATATTTG+GGG | - | chr3.3:17165909-17165928 | MS.gene28203:CDS | 25.0% |
| ! | TTACGGTTTATATTGTGATA+CGG | - | chr3.3:17165150-17165169 | MS.gene28203:intron | 25.0% |
| !! | ATGTATAAAGAGAAAAGTGT+TGG | + | chr3.3:17165455-17165474 | None:intergenic | 25.0% |
| !! | CACAAATTTTATAGAGGATT+CGG | - | chr3.3:17165353-17165372 | MS.gene28203:intron | 25.0% |
| !! | GTTACAACTTTCTTATTTCT+AGG | + | chr3.3:17163937-17163956 | None:intergenic | 25.0% |
| !! | TTCTTAATGCTTTTATTGTC+TGG | - | chr3.3:17165111-17165130 | MS.gene28203:intron | 25.0% |
| !!! | ACTTTTTCATGTAACTTCTA+GGG | - | chr3.3:17164476-17164495 | MS.gene28203:intron | 25.0% |
| !!! | TCACAATGGATTAAATCAAA+CGG | + | chr3.3:17165903-17165922 | None:intergenic | 25.0% |
| AAAGAAAAACCAACATTGCA+AGG | - | chr3.3:17163060-17163079 | MS.gene28203:CDS | 30.0% | |
| AAGTGTGAATTGGTTAAATC+AGG | + | chr3.3:17166663-17166682 | None:intergenic | 30.0% | |
| AATTACGCTATGATCTATGT+CGG | + | chr3.3:17163349-17163368 | None:intergenic | 30.0% | |
| ACAAAATTCACACACATTCA+GGG | - | chr3.3:17165937-17165956 | MS.gene28203:CDS | 30.0% | |
| ACCATTTCACGTAATTTATC+GGG | - | chr3.3:17164621-17164640 | MS.gene28203:intron | 30.0% | |
| ACCGTAAATCAATTTAAAGG+CGG | + | chr3.3:17165137-17165156 | None:intergenic | 30.0% | |
| AGGTAATGCAATTTCTAATG+GGG | - | chr3.3:17163607-17163626 | MS.gene28203:intron | 30.0% | |
| AGTTGTAACCAATAATGTTG+AGG | - | chr3.3:17163948-17163967 | MS.gene28203:intron | 30.0% | |
| CACCATTTCACGTAATTTAT+CGG | - | chr3.3:17164620-17164639 | MS.gene28203:intron | 30.0% | |
| CACGAGCTATATTTAAAAGA+TGG | + | chr3.3:17166229-17166248 | None:intergenic | 30.0% | |
| CATTGAGATAAATTGTGAAG+AGG | + | chr3.3:17165777-17165796 | None:intergenic | 30.0% | |
| GAAGGATTAATGGTTGTATT+TGG | + | chr3.3:17166687-17166706 | None:intergenic | 30.0% | |
| GAAGGTAATGCAATTTCTAA+TGG | - | chr3.3:17163605-17163624 | MS.gene28203:intron | 30.0% | |
| GAGACAAATCTGATGATAAT+TGG | + | chr3.3:17164275-17164294 | None:intergenic | 30.0% | |
| GAGCTATATTTAAAAGATGG+CGG | + | chr3.3:17166226-17166245 | None:intergenic | 30.0% | |
| GATAATTACCATTTCTGTTG+TGG | + | chr3.3:17164044-17164063 | None:intergenic | 30.0% | |
| GATCGATGCTATTATTTGAA+TGG | - | chr3.3:17163871-17163890 | MS.gene28203:intron | 30.0% | |
| GTGCAAGTAGTAAAGTAAAA+CGG | + | chr3.3:17165607-17165626 | None:intergenic | 30.0% | |
| TAGAAAGACATAGAAACTCA+AGG | - | chr3.3:17164876-17164895 | MS.gene28203:intron | 30.0% | |
| TTAATGGGAATATGTGTTCA+TGG | + | chr3.3:17166563-17166582 | None:intergenic | 30.0% | |
| TTCAACACTATATTGGATTG+TGG | - | chr3.3:17164128-17164147 | MS.gene28203:intron | 30.0% | |
| TTTATATTGTGATACGGAAG+TGG | - | chr3.3:17165156-17165175 | MS.gene28203:intron | 30.0% | |
| TTTCTGTCACTAAGGAATTA+GGG | - | chr3.3:17165330-17165349 | MS.gene28203:intron | 30.0% | |
| ! | AATTTACCTTTGCAGTTTTG+GGG | - | chr3.3:17166266-17166285 | MS.gene28203:intron | 30.0% |
| ! | ATCTGCAGTTTTTAACAGTT+CGG | - | chr3.3:17164764-17164783 | MS.gene28203:intron | 30.0% |
| ! | CAATTTACCTTTGCAGTTTT+GGG | - | chr3.3:17166265-17166284 | MS.gene28203:intron | 30.0% |
| ! | GATAGATCCAATGTTTTCAA+TGG | + | chr3.3:17164253-17164272 | None:intergenic | 30.0% |
| ! | TATTTGAATGGATTCCCTAT+TGG | - | chr3.3:17163883-17163902 | MS.gene28203:intron | 30.0% |
| ! | TTAGGGCACAAATTTTATAG+AGG | - | chr3.3:17165347-17165366 | MS.gene28203:intron | 30.0% |
| !!! | AGCATGGTAAGTTTTGAAAT+CGG | + | chr3.3:17166906-17166925 | None:intergenic | 30.0% |
| !!! | CACTTTTTCATGTAACTTCT+AGG | - | chr3.3:17164475-17164494 | MS.gene28203:intron | 30.0% |
| !!! | GCCTTATTTTTATTGTGAGT+AGG | + | chr3.3:17164189-17164208 | None:intergenic | 30.0% |
| AAACTCAAGGAAAGCGATAT+TGG | - | chr3.3:17164889-17164908 | MS.gene28203:intron | 35.0% | |
| AAAGCTGCCATTGAAAACAT+TGG | - | chr3.3:17164243-17164262 | MS.gene28203:intron | 35.0% | |
| AAATAGTGCCATGTTCATCA+AGG | + | chr3.3:17166148-17166167 | None:intergenic | 35.0% | |
| AACACGAAGGTTGGAATAAA+TGG | + | chr3.3:17166382-17166401 | None:intergenic | 35.0% | |
| AACGAACAAGGATCCTTAAT+TGG | + | chr3.3:17165250-17165269 | None:intergenic | 35.0% | |
| AAGCGATATTGGAGAACTAT+TGG | - | chr3.3:17164900-17164919 | MS.gene28203:intron | 35.0% | |
| AAGGCTCATATGGAGATTTA+TGG | + | chr3.3:17166344-17166363 | None:intergenic | 35.0% | |
| AATCCTTGCCTTTGTAATCT+AGG | - | chr3.3:17165203-17165222 | MS.gene28203:intron | 35.0% | |
| ACACAAAACTCAAGAGTCTT+TGG | - | chr3.3:17163502-17163521 | MS.gene28203:intron | 35.0% | |
| ACACCAAAACCAAATACAAC+AGG | - | chr3.3:17166827-17166846 | MS.gene28203:intron | 35.0% | |
| ACACGAAGGTTGGAATAAAT+GGG | + | chr3.3:17166381-17166400 | None:intergenic | 35.0% | |
| AGATGTTGAAATCCCAACAA+AGG | - | chr3.3:17164541-17164560 | MS.gene28203:intron | 35.0% | |
| AGGCTCATATGGAGATTTAT+GGG | + | chr3.3:17166343-17166362 | None:intergenic | 35.0% | |
| AGGGATTGGATTATCAAGAA+GGG | + | chr3.3:17166631-17166650 | None:intergenic | 35.0% | |
| AGTCCAGAATCTACCAAATT+CGG | - | chr3.3:17163430-17163449 | MS.gene28203:CDS | 35.0% | |
| AGTTAACGTTTCTGTCACTA+AGG | - | chr3.3:17165322-17165341 | MS.gene28203:intron | 35.0% | |
| ATAATGTCAGGTATAGGTGT+TGG | + | chr3.3:17166729-17166748 | None:intergenic | 35.0% | |
| ATTACGCTATGATCTATGTC+GGG | + | chr3.3:17163348-17163367 | None:intergenic | 35.0% | |
| ATTCCTAGATTACAAAGGCA+AGG | + | chr3.3:17165209-17165228 | None:intergenic | 35.0% | |
| ATTCCTCAGCTGTAAAAGTT+GGG | + | chr3.3:17163999-17164018 | None:intergenic | 35.0% | |
| CAAAATTCACACACATTCAG+GGG | - | chr3.3:17165938-17165957 | MS.gene28203:CDS | 35.0% | |
| CAAATTTCTGAATGTCGTCA+AGG | - | chr3.3:17163456-17163475 | MS.gene28203:intron | 35.0% | |
| CACAAAACTCAAGAGTCTTT+GGG | - | chr3.3:17163503-17163522 | MS.gene28203:intron | 35.0% | |
| CACAAAATTCACACACATTC+AGG | - | chr3.3:17165936-17165955 | MS.gene28203:CDS | 35.0% | |
| CATATGGAGATTTATGGGAA+AGG | + | chr3.3:17166338-17166357 | None:intergenic | 35.0% | |
| CCAAAACTGCAAAGGTAAAT+TGG | + | chr3.3:17166267-17166286 | None:intergenic | 35.0% | |
| CTATATTGGATTGTGGATAG+TGG | - | chr3.3:17164135-17164154 | MS.gene28203:intron | 35.0% | |
| CTGGCGAAAGCTTATTTAAT+GGG | + | chr3.3:17166578-17166597 | None:intergenic | 35.0% | |
| GATGTTGAAATCCCAACAAA+GGG | - | chr3.3:17164542-17164561 | MS.gene28203:intron | 35.0% | |
| GATTTGTGTAAAGGCTCATA+TGG | + | chr3.3:17166354-17166373 | None:intergenic | 35.0% | |
| GCGAGTAAAATCATCAACAA+TGG | + | chr3.3:17165979-17165998 | None:intergenic | 35.0% | |
| GGATGAATTAGAATCTTACC+AGG | - | chr3.3:17163524-17163543 | MS.gene28203:intron | 35.0% | |
| GGGTAATTCATCAAGAAAAC+AGG | - | chr3.3:17164496-17164515 | MS.gene28203:intron | 35.0% | |
| GGGTCAGATAAAATAATGTC+AGG | + | chr3.3:17166741-17166760 | None:intergenic | 35.0% | |
| GTAGTAATCAGAGATTGAGA+GGG | + | chr3.3:17163484-17163503 | None:intergenic | 35.0% | |
| GTGTTATGTGATGAACAAGA+CGG | + | chr3.3:17165707-17165726 | None:intergenic | 35.0% | |
| GTTCTTCAGAAGCTTGATTT+CGG | + | chr3.3:17164601-17164620 | None:intergenic | 35.0% | |
| GTTTCTGTCACTAAGGAATT+AGG | - | chr3.3:17165329-17165348 | MS.gene28203:intron | 35.0% | |
| TAACACGTACTTCTGATCTT+TGG | - | chr3.3:17165721-17165740 | MS.gene28203:CDS | 35.0% | |
| TAATGTCAGGTATAGGTGTT+GGG | + | chr3.3:17166728-17166747 | None:intergenic | 35.0% | |
| TACCTTCAAGATCGTAAACA+CGG | + | chr3.3:17166509-17166528 | None:intergenic | 35.0% | |
| TAGGAATAGATACAAACCCT+TGG | - | chr3.3:17165222-17165241 | MS.gene28203:intron | 35.0% | |
| TATTCCTCAGCTGTAAAAGT+TGG | + | chr3.3:17164000-17164019 | None:intergenic | 35.0% | |
| TCATCAGATTTGTCTCTTGA+TGG | - | chr3.3:17164279-17164298 | MS.gene28203:intron | 35.0% | |
| TCCTGCACAACACAAAAATT+CGG | + | chr3.3:17164390-17164409 | None:intergenic | 35.0% | |
| TCTCTTCACCTCAACATTAT+TGG | + | chr3.3:17163959-17163978 | None:intergenic | 35.0% | |
| TCTGGCGAAAGCTTATTTAA+TGG | + | chr3.3:17166579-17166598 | None:intergenic | 35.0% | |
| TGTAGTAATCAGAGATTGAG+AGG | + | chr3.3:17163485-17163504 | None:intergenic | 35.0% | |
| TGTATTTGGCAAGTGTGAAT+TGG | + | chr3.3:17166673-17166692 | None:intergenic | 35.0% | |
| TGTTATGTGATGAACAAGAC+GGG | + | chr3.3:17165706-17165725 | None:intergenic | 35.0% | |
| TTGCAAGTCTTTGTGATAAG+AGG | + | chr3.3:17163818-17163837 | None:intergenic | 35.0% | |
| TTGTTGGGATTTCAACATCT+TGG | + | chr3.3:17164541-17164560 | None:intergenic | 35.0% | |
| ! | AAAGCTGCGTTTTCAGAATA+AGG | - | chr3.3:17164836-17164855 | MS.gene28203:intron | 35.0% |
| ! | AAGACTTTACGTGCTGATAA+TGG | - | chr3.3:17166095-17166114 | MS.gene28203:CDS | 35.0% |
| ! | AAGCTGCGTTTTCAGAATAA+GGG | - | chr3.3:17164837-17164856 | MS.gene28203:intron | 35.0% |
| ! | AGAATAAGGGTTCACGTTTT+TGG | - | chr3.3:17164850-17164869 | MS.gene28203:intron | 35.0% |
| ! | AGACTTTACGTGCTGATAAT+GGG | - | chr3.3:17166096-17166115 | MS.gene28203:CDS | 35.0% |
| ! | ATGATTTTACTCGCTTCACA+TGG | - | chr3.3:17165985-17166004 | MS.gene28203:CDS | 35.0% |
| ! | CCAATTTACCTTTGCAGTTT+TGG | - | chr3.3:17166264-17166283 | MS.gene28203:intron | 35.0% |
| ! | CTATCAGGCAAGCATTTTAA+TGG | - | chr3.3:17165651-17165670 | MS.gene28203:CDS | 35.0% |
| ! | GCCGCCTTTAAATTGATTTA+CGG | - | chr3.3:17165133-17165152 | MS.gene28203:intron | 35.0% |
| ! | TATTCCAACCTTCGTGTTTT+CGG | - | chr3.3:17166384-17166403 | MS.gene28203:CDS | 35.0% |
| ! | TCTGCAGTTTTTAACAGTTC+GGG | - | chr3.3:17164765-17164784 | MS.gene28203:intron | 35.0% |
| ! | TGATTTTACTCGCTTCACAT+GGG | - | chr3.3:17165986-17166005 | MS.gene28203:CDS | 35.0% |
| ! | TTCGACTACTCCATTTTGTT+GGG | + | chr3.3:17166195-17166214 | None:intergenic | 35.0% |
| !! | CAAATTTGTTATTAGGGGTG+AGG | + | chr3.3:17166431-17166450 | None:intergenic | 35.0% |
| !! | CAGAAATTTGTTGCCGAATT+TGG | + | chr3.3:17163446-17163465 | None:intergenic | 35.0% |
| !! | GGTTTTTCTTTTGATTGCTC+TGG | + | chr3.3:17163051-17163070 | None:intergenic | 35.0% |
| !! | TCAACATCTTGGTTCTTTTG+TGG | + | chr3.3:17164530-17164549 | None:intergenic | 35.0% |
| !! | TCCGTTTTGATGACCAAAAT+CGG | + | chr3.3:17164670-17164689 | None:intergenic | 35.0% |
| !!! | AAGCGAGTTTGTTTTGCTAA+GGG | + | chr3.3:17165846-17165865 | None:intergenic | 35.0% |
| !!! | TTGGTGTCATCTTGTTTTTC+TGG | + | chr3.3:17166597-17166616 | None:intergenic | 35.0% |
| AACTTTCTTCAACATGTCGC+AGG | + | chr3.3:17163565-17163584 | None:intergenic | 40.0% | |
| AATCTTATTCGCAGGTACGT+GGG | - | chr3.3:17163637-17163656 | MS.gene28203:intron | 40.0% | |
| AGCTGTGTGAGAAGGATTAA+TGG | + | chr3.3:17166697-17166716 | None:intergenic | 40.0% | |
| ATAAGCAACCGAAAACACGA+AGG | + | chr3.3:17166395-17166414 | None:intergenic | 40.0% | |
| ATACCTGATGCATTTGCAAG+TGG | + | chr3.3:17164069-17164088 | None:intergenic | 40.0% | |
| ATCCCAACAAAGGGACAATT+CGG | - | chr3.3:17164551-17164570 | MS.gene28203:intron | 40.0% | |
| ATCTGCATAGCATGGGATAT+AGG | + | chr3.3:17163763-17163782 | None:intergenic | 40.0% | |
| ATGGGTGGAGATTTGTGTAA+AGG | + | chr3.3:17166363-17166382 | None:intergenic | 40.0% | |
| CAAACCCTTGGAACCAATTA+AGG | - | chr3.3:17165234-17165253 | MS.gene28203:intron | 40.0% | |
| CAAGTCTTTGTGATAAGAGG+AGG | + | chr3.3:17163815-17163834 | None:intergenic | 40.0% | |
| CAATGCACTCACTATGAACA+AGG | - | chr3.3:17163835-17163854 | MS.gene28203:intron | 40.0% | |
| CATTGCAACGTTTCCACAAT+GGG | + | chr3.3:17163290-17163309 | None:intergenic | 40.0% | |
| CCATTTGTCTCTCTTGTTGA+AGG | + | chr3.3:17163716-17163735 | None:intergenic | 40.0% | |
| CCTTCAACAAGAGAGACAAA+TGG | - | chr3.3:17163713-17163732 | MS.gene28203:intron | 40.0% | |
| CGATATTGGAGAACTATTGG+AGG | - | chr3.3:17164903-17164922 | MS.gene28203:intron | 40.0% | |
| CTAGTTAACCAACCTCTGAA+TGG | - | chr3.3:17163153-17163172 | MS.gene28203:CDS | 40.0% | |
| CTCAGCGCAAAAAACAAACT+CGG | - | chr3.3:17163216-17163235 | MS.gene28203:CDS | 40.0% | |
| CTCCATGATAGATTCTCTCA+AGG | - | chr3.3:17163402-17163421 | MS.gene28203:CDS | 40.0% | |
| CTCCTTGAGAGAATCTATCA+TGG | + | chr3.3:17163407-17163426 | None:intergenic | 40.0% | |
| CTTGAGAGAATCTATCATGG+AGG | + | chr3.3:17163404-17163423 | None:intergenic | 40.0% | |
| GAATCAAGCATGAACGAACA+AGG | + | chr3.3:17165262-17165281 | None:intergenic | 40.0% | |
| GAATTGGTTAAATCAGGCTC+AGG | + | chr3.3:17166657-17166676 | None:intergenic | 40.0% | |
| GACTTTGTTGGACTACCTAA+TGG | - | chr3.3:17164216-17164235 | MS.gene28203:intron | 40.0% | |
| GAGATTTATGGGAAAGGAGT+GGG | + | chr3.3:17166332-17166351 | None:intergenic | 40.0% | |
| GAGGGATTGGATTATCAAGA+AGG | + | chr3.3:17166632-17166651 | None:intergenic | 40.0% | |
| GCCCGATAAATTACGTGAAA+TGG | + | chr3.3:17164625-17164644 | None:intergenic | 40.0% | |
| GCTTAACGAATCTTATTCGC+AGG | - | chr3.3:17163629-17163648 | MS.gene28203:intron | 40.0% | |
| GGGATTGGATTATCAAGAAG+GGG | + | chr3.3:17166630-17166649 | None:intergenic | 40.0% | |
| GTAACTAAACCCTCCATTGT+TGG | - | chr3.3:17165001-17165020 | MS.gene28203:intron | 40.0% | |
| GTTATGTGATGAACAAGACG+GGG | + | chr3.3:17165705-17165724 | None:intergenic | 40.0% | |
| GTTGTCCCCAAATATCACAA+TGG | + | chr3.3:17165917-17165936 | None:intergenic | 40.0% | |
| TACCGTGTTTACGATCTTGA+AGG | - | chr3.3:17166504-17166523 | MS.gene28203:CDS | 40.0% | |
| TACTCATCTCCAACAATGGA+GGG | + | chr3.3:17165013-17165032 | None:intergenic | 40.0% | |
| TCAACAAGAGAGACAAATGG+AGG | - | chr3.3:17163716-17163735 | MS.gene28203:intron | 40.0% | |
| TCATTGCAACGTTTCCACAA+TGG | + | chr3.3:17163291-17163310 | None:intergenic | 40.0% | |
| TGAGGAATACAGGCAGATTA+TGG | - | chr3.3:17164011-17164030 | MS.gene28203:intron | 40.0% | |
| TGGTTAACTAGTGATATCCC+TGG | + | chr3.3:17163144-17163163 | None:intergenic | 40.0% | |
| TGTAAAAGTTGGGCTGTCAT+TGG | + | chr3.3:17163989-17164008 | None:intergenic | 40.0% | |
| TGTCAGAGAGGAAAAAGAGA+AGG | - | chr3.3:17163587-17163606 | MS.gene28203:intron | 40.0% | |
| TTAAATCAGGCTCAGGAAGA+GGG | + | chr3.3:17166650-17166669 | None:intergenic | 40.0% | |
| TTACTCATCTCCAACAATGG+AGG | + | chr3.3:17165014-17165033 | None:intergenic | 40.0% | |
| TTATGTGATGAACAAGACGG+GGG | + | chr3.3:17165704-17165723 | None:intergenic | 40.0% | |
| TTGCCGAATTTGGTAGATTC+TGG | + | chr3.3:17163436-17163455 | None:intergenic | 40.0% | |
| TTGGATTATCAAGAAGGGGT+AGG | + | chr3.3:17166626-17166645 | None:intergenic | 40.0% | |
| ! | AGGATCCTTAATTGGTTCCA+AGG | + | chr3.3:17165242-17165261 | None:intergenic | 40.0% |
| ! | CATGAACTTTTCGCGTATCT+GGG | + | chr3.3:17163686-17163705 | None:intergenic | 40.0% |
| ! | CTTTTACAGCTGAGGAATAC+AGG | - | chr3.3:17164001-17164020 | MS.gene28203:intron | 40.0% |
| ! | GACTTTACGTGCTGATAATG+GGG | - | chr3.3:17166097-17166116 | MS.gene28203:CDS | 40.0% |
| ! | GCAATGATCTGGTGTTAACA+TGG | - | chr3.3:17163304-17163323 | MS.gene28203:CDS | 40.0% |
| ! | GGATCCTTAATTGGTTCCAA+GGG | + | chr3.3:17165241-17165260 | None:intergenic | 40.0% |
| ! | GTTCGACTACTCCATTTTGT+TGG | + | chr3.3:17166196-17166215 | None:intergenic | 40.0% |
| ! | GTTTCCACAATGGGAGTTTT+GGG | + | chr3.3:17163281-17163300 | None:intergenic | 40.0% |
| ! | TAAATTGTGAAGAGGAGCGT+TGG | + | chr3.3:17165769-17165788 | None:intergenic | 40.0% |
| ! | TAGAGGATTCGGTAGCAATT+AGG | - | chr3.3:17165364-17165383 | MS.gene28203:intron | 40.0% |
| ! | TCCGAATTTTTGTGTTGTGC+AGG | - | chr3.3:17164386-17164405 | MS.gene28203:intron | 40.0% |
| ! | TCGACTACTCCATTTTGTTG+GGG | + | chr3.3:17166194-17166213 | None:intergenic | 40.0% |
| !! | ACTTTACGTGCTGATAATGG+GGG | - | chr3.3:17166098-17166117 | MS.gene28203:CDS | 40.0% |
| !! | ATGGCAGCTTTTTCTCCATT+AGG | + | chr3.3:17164234-17164253 | None:intergenic | 40.0% |
| !! | GCCGATTTTGGTCATCAAAA+CGG | - | chr3.3:17164666-17164685 | MS.gene28203:intron | 40.0% |
| !!! | CAAGCGAGTTTGTTTTGCTA+AGG | + | chr3.3:17165847-17165866 | None:intergenic | 40.0% |
| !!! | GTTTTGAAATCGGCAAGATG+TGG | + | chr3.3:17166896-17166915 | None:intergenic | 40.0% |
| AACAAACTCGGTCTGATCGA+TGG | - | chr3.3:17163228-17163247 | MS.gene28203:CDS | 45.0% | |
| AACTGCAGATTCAAAAGCCC+AGG | + | chr3.3:17164754-17164773 | None:intergenic | 45.0% | |
| ACAAATGGAGGTTGTAACGC+AGG | - | chr3.3:17163728-17163747 | MS.gene28203:intron | 45.0% | |
| ACCAACATTGCAAGGTGCAA+AGG | - | chr3.3:17163068-17163087 | MS.gene28203:CDS | 45.0% | |
| ACTGCAGATTCAAAAGCCCA+GGG | + | chr3.3:17164753-17164772 | None:intergenic | 45.0% | |
| AGTGCCATGTTCATCAAGGA+AGG | + | chr3.3:17166144-17166163 | None:intergenic | 45.0% | |
| AGTTACGTCCATTCAGAGGT+TGG | + | chr3.3:17163164-17163183 | None:intergenic | 45.0% | |
| ATATCCCTGGTGTGTCAGAA+TGG | + | chr3.3:17163131-17163150 | None:intergenic | 45.0% | |
| ATGATCTATGTCGGGTTCGA+TGG | + | chr3.3:17163340-17163359 | None:intergenic | 45.0% | |
| ATGGACGTAACTACGGTGAA+TGG | - | chr3.3:17163172-17163191 | MS.gene28203:CDS | 45.0% | |
| ATGGATGAGGGCTGCAATAT+AGG | + | chr3.3:17166792-17166811 | None:intergenic | 45.0% | |
| ATGGTGCAAGAGCAAAGGAT+CGG | + | chr3.3:17163112-17163131 | None:intergenic | 45.0% | |
| ATGTCGCAGGAACATGTGAT+GGG | + | chr3.3:17163552-17163571 | None:intergenic | 45.0% | |
| CAAATGGAGGTTGTAACGCA+GGG | - | chr3.3:17163729-17163748 | MS.gene28203:intron | 45.0% | |
| CACTTGCGAAAATCGCTATC+AGG | - | chr3.3:17165636-17165655 | MS.gene28203:CDS | 45.0% | |
| CCAGATACGCGAAAAGTTCA+TGG | - | chr3.3:17163684-17163703 | MS.gene28203:intron | 45.0% | |
| CCTCTGAATGGACGTAACTA+CGG | - | chr3.3:17163165-17163184 | MS.gene28203:CDS | 45.0% | |
| CGAAGGTTGGAATAAATGGG+TGG | + | chr3.3:17166378-17166397 | None:intergenic | 45.0% | |
| CGTTCCTTCCTTGATGAACA+TGG | - | chr3.3:17166137-17166156 | MS.gene28203:CDS | 45.0% | |
| CTTTCACCCCAAAACTGCAA+AGG | + | chr3.3:17166275-17166294 | None:intergenic | 45.0% | |
| GAAGAAAGTTGCTGTCAGAG+AGG | - | chr3.3:17163575-17163594 | MS.gene28203:intron | 45.0% | |
| GAAGTGGTCTCTATGGATGA+GGG | + | chr3.3:17166804-17166823 | None:intergenic | 45.0% | |
| GAATCTTATTCGCAGGTACG+TGG | - | chr3.3:17163636-17163655 | MS.gene28203:intron | 45.0% | |
| GATTCCCTATTGGACACACA+TGG | - | chr3.3:17163893-17163912 | MS.gene28203:intron | 45.0% | |
| GCAATATAGGAGGAGCAGAT+GGG | + | chr3.3:17166779-17166798 | None:intergenic | 45.0% | |
| GCTATGCTCCACAACAGAAA+TGG | - | chr3.3:17164033-17164052 | MS.gene28203:intron | 45.0% | |
| GGAGATTTATGGGAAAGGAG+TGG | + | chr3.3:17166333-17166352 | None:intergenic | 45.0% | |
| GGATATCCTCACGAACAGAA+GGG | - | chr3.3:17166480-17166499 | MS.gene28203:CDS | 45.0% | |
| GGGTTACTCATCTCCAACAA+TGG | + | chr3.3:17165017-17165036 | None:intergenic | 45.0% | |
| GGTAGTCCAACAAAGTCATG+AGG | + | chr3.3:17164213-17164232 | None:intergenic | 45.0% | |
| GTGGAAACGTTGCAATGATC+TGG | - | chr3.3:17163293-17163312 | MS.gene28203:CDS | 45.0% | |
| GTTAAATCAGGCTCAGGAAG+AGG | + | chr3.3:17166651-17166670 | None:intergenic | 45.0% | |
| GTTATTAGGGGTGAGGTTTG+TGG | + | chr3.3:17166424-17166443 | None:intergenic | 45.0% | |
| TAAGAGGAGGTTCCACTTTG+TGG | + | chr3.3:17163802-17163821 | None:intergenic | 45.0% | |
| TCAGAATGGTGCAAGAGCAA+AGG | + | chr3.3:17163117-17163136 | None:intergenic | 45.0% | |
| TCCCAACAAAGGGACAATTC+GGG | - | chr3.3:17164552-17164571 | MS.gene28203:intron | 45.0% | |
| TGAAGTGGTCTCTATGGATG+AGG | + | chr3.3:17166805-17166824 | None:intergenic | 45.0% | |
| TGCAATATAGGAGGAGCAGA+TGG | + | chr3.3:17166780-17166799 | None:intergenic | 45.0% | |
| TGCACTCACTATGAACAAGG+AGG | - | chr3.3:17163838-17163857 | MS.gene28203:intron | 45.0% | |
| TGCATAGCATGGGATATAGG+CGG | + | chr3.3:17163760-17163779 | None:intergenic | 45.0% | |
| TTATCAAGAAGGGGTAGGAC+AGG | + | chr3.3:17166621-17166640 | None:intergenic | 45.0% | |
| TTGAAATCGGCAAGATGTGG+CGG | + | chr3.3:17166893-17166912 | None:intergenic | 45.0% | |
| TTTATGGGAAAGGAGTGGGT+AGG | + | chr3.3:17166328-17166347 | None:intergenic | 45.0% | |
| ! | AAGGCACCTCATGACTTTGT+TGG | - | chr3.3:17164204-17164223 | MS.gene28203:intron | 45.0% |
| ! | CCATGAACTTTTCGCGTATC+TGG | + | chr3.3:17163687-17163706 | None:intergenic | 45.0% |
| ! | CGACTACTCCATTTTGTTGG+GGG | + | chr3.3:17166193-17166212 | None:intergenic | 45.0% |
| ! | CGTTTCCACAATGGGAGTTT+TGG | + | chr3.3:17163282-17163301 | None:intergenic | 45.0% |
| ! | GACTACTCCATTTTGTTGGG+GGG | + | chr3.3:17166192-17166211 | None:intergenic | 45.0% |
| ! | GCACCGAATTTTACACTTCG+GGG | - | chr3.3:17164787-17164806 | MS.gene28203:intron | 45.0% |
| ! | TGGATTTTCAACCGTAGCAG+TGG | + | chr3.3:17163031-17163050 | None:intergenic | 45.0% |
| ! | TTTTTGTGTTGTGCAGGACG+TGG | - | chr3.3:17164392-17164411 | MS.gene28203:intron | 45.0% |
| !! | GGCACCGAATTTTACACTTC+GGG | - | chr3.3:17164786-17164805 | MS.gene28203:intron | 45.0% |
| !! | GGGCCTGTTGTATTTGGTTT+TGG | + | chr3.3:17166833-17166852 | None:intergenic | 45.0% |
| !!! | CGAGTTTGTTTTTTGCGCTG+AGG | + | chr3.3:17163218-17163237 | None:intergenic | 45.0% |
| !!! | GGGCACCGAATTTTACACTT+CGG | - | chr3.3:17164785-17164804 | MS.gene28203:intron | 45.0% |
| !!! | TGTTTTTTGCGCTGAGGTTG+AGG | + | chr3.3:17163212-17163231 | None:intergenic | 45.0% |
| !!! | TTGGTTTTGGTGTGCTGAAG+TGG | + | chr3.3:17166820-17166839 | None:intergenic | 45.0% |
| AAGAAGGGGTAGGACAGGAT+TGG | + | chr3.3:17166616-17166635 | None:intergenic | 50.0% | |
| ACGACCCAAAACTCCCATTG+TGG | - | chr3.3:17163274-17163293 | MS.gene28203:CDS | 50.0% | |
| ACTCGGTCTGATCGATGGAA+CGG | - | chr3.3:17163233-17163252 | MS.gene28203:CDS | 50.0% | |
| ATCTTTGGCACCAACGTCTC+GGG | - | chr3.3:17165736-17165755 | MS.gene28203:CDS | 50.0% | |
| ATTTCGGCGACCGAAGTACA+TGG | + | chr3.3:17164585-17164604 | None:intergenic | 50.0% | |
| CAATCCTCGAGTTCGACACT+CGG | - | chr3.3:17165576-17165595 | MS.gene28203:intron | 50.0% | |
| CAGCCACTTGCAAATGCATC+AGG | - | chr3.3:17164063-17164082 | MS.gene28203:intron | 50.0% | |
| CATGTCGCAGGAACATGTGA+TGG | + | chr3.3:17163553-17163572 | None:intergenic | 50.0% | |
| CCGTAGTTACGTCCATTCAG+AGG | + | chr3.3:17163168-17163187 | None:intergenic | 50.0% | |
| CCTATTGGACACACATGGCA+CGG | - | chr3.3:17163898-17163917 | MS.gene28203:intron | 50.0% | |
| CGGATATCCTCACGAACAGA+AGG | - | chr3.3:17166479-17166498 | MS.gene28203:CDS | 50.0% | |
| CGTGCCATGTGTGTCCAATA+GGG | + | chr3.3:17163900-17163919 | None:intergenic | 50.0% | |
| CTATTGGACACACATGGCAC+GGG | - | chr3.3:17163899-17163918 | MS.gene28203:intron | 50.0% | |
| CTCTGGCCTCGACATTAATC+GGG | - | chr3.3:17164691-17164710 | MS.gene28203:intron | 50.0% | |
| CTGATACAGCAGCAGCAGTT+TGG | - | chr3.3:17163373-17163392 | MS.gene28203:CDS | 50.0% | |
| GAGGTTCCACTTTGTGGCAT+CGG | + | chr3.3:17163796-17163815 | None:intergenic | 50.0% | |
| GAGTGGGTAGGTGGTTAATG+AGG | + | chr3.3:17166316-17166335 | None:intergenic | 50.0% | |
| GATCTTTGGCACCAACGTCT+CGG | - | chr3.3:17165735-17165754 | MS.gene28203:CDS | 50.0% | |
| GATGAGGGCTGCAATATAGG+AGG | + | chr3.3:17166789-17166808 | None:intergenic | 50.0% | |
| GCAACCGAAAACACGAAGGT+TGG | + | chr3.3:17166391-17166410 | None:intergenic | 50.0% | |
| GCCCGAATTGTCCCTTTGTT+GGG | + | chr3.3:17164556-17164575 | None:intergenic | 50.0% | |
| GCCTTTGCACCTTGCAATGT+TGG | + | chr3.3:17163072-17163091 | None:intergenic | 50.0% | |
| GCTCTGGCCTCGACATTAAT+CGG | - | chr3.3:17164690-17164709 | MS.gene28203:intron | 50.0% | |
| GGCTGACAAAACCACTGCTA+CGG | - | chr3.3:17163017-17163036 | MS.gene28203:CDS | 50.0% | |
| GGGCCCCGAAGTGTAAAATT+CGG | + | chr3.3:17164793-17164812 | None:intergenic | 50.0% | |
| GTGAGATGAACGACGAAGCT+CGG | + | chr3.3:17166858-17166877 | None:intergenic | 50.0% | |
| GTGTGCTGAAGTGGTCTCTA+TGG | + | chr3.3:17166811-17166830 | None:intergenic | 50.0% | |
| TGAACAAGGAGGACACTCAG+TGG | - | chr3.3:17163849-17163868 | MS.gene28203:intron | 50.0% | |
| TGAGATGAACGACGAAGCTC+GGG | + | chr3.3:17166857-17166876 | None:intergenic | 50.0% | |
| TGCACCATTCTGACACACCA+GGG | - | chr3.3:17163124-17163143 | MS.gene28203:CDS | 50.0% | |
| TGGTCATCAAAACGGAGCTC+TGG | - | chr3.3:17164674-17164693 | MS.gene28203:intron | 50.0% | |
| TGGTGCAAGAGCAAAGGATC+GGG | + | chr3.3:17163111-17163130 | None:intergenic | 50.0% | |
| TGTCGGGTTCGATGGAATGA+AGG | + | chr3.3:17163332-17163351 | None:intergenic | 50.0% | |
| TTGCACCATTCTGACACACC+AGG | - | chr3.3:17163123-17163142 | MS.gene28203:CDS | 50.0% | |
| ! | ACAGAGTGTCATCATTGCCC+AGG | + | chr3.3:17164437-17164456 | None:intergenic | 50.0% |
| ! | ACTTTTCGCGTATCTGGGAG+TGG | + | chr3.3:17163681-17163700 | None:intergenic | 50.0% |
| ! | CAGCCCAACTTTTACAGCTG+AGG | - | chr3.3:17163993-17164012 | MS.gene28203:intron | 50.0% |
| ! | GCACGTCGCTGCATTTTCAT+CGG | - | chr3.3:17166459-17166478 | MS.gene28203:CDS | 50.0% |
| !! | AGGAACATGTGATGGGTTCC+TGG | + | chr3.3:17163545-17163564 | None:intergenic | 50.0% |
| !! | TCAGGTATAGGTGTTGGGCT+GGG | + | chr3.3:17166723-17166742 | None:intergenic | 50.0% |
| !! | TTGTGAAGAGGAGCGTTGGA+TGG | + | chr3.3:17165765-17165784 | None:intergenic | 50.0% |
| AAATCGGCAAGATGTGGCGG+AGG | + | chr3.3:17166890-17166909 | None:intergenic | 55.0% | |
| AAGCCCAGGGTGCGTGAAAT+TGG | + | chr3.3:17164740-17164759 | None:intergenic | 55.0% | |
| AGATGAACGACGAAGCTCGG+GGG | + | chr3.3:17166855-17166874 | None:intergenic | 55.0% | |
| AGATGGGAGTGGGGACATAG+AGG | + | chr3.3:17166763-17166782 | None:intergenic | 55.0% | |
| AGCCCAGGGTGCGTGAAATT+GGG | + | chr3.3:17164739-17164758 | None:intergenic | 55.0% | |
| ATAGGAGGAGCAGATGGGAG+TGG | + | chr3.3:17166774-17166793 | None:intergenic | 55.0% | |
| ATGGGAAAGGAGTGGGTAGG+TGG | + | chr3.3:17166325-17166344 | None:intergenic | 55.0% | |
| ATGGGAGTGGGGACATAGAG+GGG | + | chr3.3:17166761-17166780 | None:intergenic | 55.0% | |
| CCGTGCCATGTGTGTCCAAT+AGG | + | chr3.3:17163901-17163920 | None:intergenic | 55.0% | |
| CGCCCGAATTGTCCCTTTGT+TGG | + | chr3.3:17164557-17164576 | None:intergenic | 55.0% | |
| CGGTATCCCTTCTGTTCGTG+AGG | + | chr3.3:17166489-17166508 | None:intergenic | 55.0% | |
| GAGATGAACGACGAAGCTCG+GGG | + | chr3.3:17166856-17166875 | None:intergenic | 55.0% | |
| GATGGGAGTGGGGACATAGA+GGG | + | chr3.3:17166762-17166781 | None:intergenic | 55.0% | |
| GCGAGCGATCTGCATAGCAT+GGG | + | chr3.3:17163770-17163789 | None:intergenic | 55.0% | |
| GCTCACACCCCCCAACAAAA+TGG | - | chr3.3:17166182-17166201 | MS.gene28203:intron | 55.0% | |
| GGCCCCGAATCAGCTTATTC+GGG | - | chr3.3:17164642-17164661 | MS.gene28203:intron | 55.0% | |
| GGCGACCGAAGTACATGGTT+CGG | + | chr3.3:17164580-17164599 | None:intergenic | 55.0% | |
| GGCGCCCGAATAAGCTGATT+CGG | + | chr3.3:17164649-17164668 | None:intergenic | 55.0% | |
| GGGCCCCGAATCAGCTTATT+CGG | - | chr3.3:17164641-17164660 | MS.gene28203:intron | 55.0% | |
| GTGGATACGAGGAGGACGAT+TGG | - | chr3.3:17164411-17164430 | MS.gene28203:intron | 55.0% | |
| TAGGAGGAGCAGATGGGAGT+GGG | + | chr3.3:17166773-17166792 | None:intergenic | 55.0% | |
| TCAGGCTCAGGAAGAGGGAT+TGG | + | chr3.3:17166645-17166664 | None:intergenic | 55.0% | |
| TGCGAGCGATCTGCATAGCA+TGG | + | chr3.3:17163771-17163790 | None:intergenic | 55.0% | |
| TTGTGCAGGACGTGGATACG+AGG | - | chr3.3:17164400-17164419 | MS.gene28203:intron | 55.0% | |
| ! | CTGGGTTGAGCTGTGTGAGA+AGG | + | chr3.3:17166705-17166724 | None:intergenic | 55.0% |
| ! | GCGCCCGAATAAGCTGATTC+GGG | + | chr3.3:17164648-17164667 | None:intergenic | 55.0% |
| !! | AAGACCGAGTGTCGAACTCG+AGG | + | chr3.3:17165583-17165602 | None:intergenic | 55.0% |
| !! | ACAAGACGGGGGTTCTGAGT+TGG | + | chr3.3:17165693-17165712 | None:intergenic | 55.0% |
| !! | ACATTAATCGGGCGCCGAAC+TGG | - | chr3.3:17164702-17164721 | MS.gene28203:intron | 55.0% |
| !! | CGCCCGAATAAGCTGATTCG+GGG | + | chr3.3:17164647-17164666 | None:intergenic | 55.0% |
| !! | GTCAGGTATAGGTGTTGGGC+TGG | + | chr3.3:17166724-17166743 | None:intergenic | 55.0% |
| !! | TGGAACGGTGAAAGCGTCGT+TGG | - | chr3.3:17163248-17163267 | MS.gene28203:CDS | 55.0% |
| !!! | GCTTATTCGGGCGCCGATTT+TGG | - | chr3.3:17164654-17164673 | MS.gene28203:intron | 55.0% |
| AGGAGGAGCAGATGGGAGTG+GGG | + | chr3.3:17166772-17166791 | None:intergenic | 60.0% | |
| ATGAACGACGAAGCTCGGGG+GGG | + | chr3.3:17166853-17166872 | None:intergenic | 60.0% | |
| CGCACACCGATGCCACAAAG+TGG | - | chr3.3:17163787-17163806 | MS.gene28203:intron | 60.0% | |
| GATGAACGACGAAGCTCGGG+GGG | + | chr3.3:17166854-17166873 | None:intergenic | 60.0% | |
| GCCCAGGGTGCGTGAAATTG+GGG | + | chr3.3:17164738-17164757 | None:intergenic | 60.0% | |
| GCCCCAATTTCACGCACCCT+GGG | - | chr3.3:17164734-17164753 | MS.gene28203:intron | 60.0% | |
| TCGGCGCCCGATTAATGTCG+AGG | + | chr3.3:17164700-17164719 | None:intergenic | 60.0% | |
| TCGGGGGGGCCTGTTGTATT+TGG | + | chr3.3:17166839-17166858 | None:intergenic | 60.0% | |
| TGCAGGACGTGGATACGAGG+AGG | - | chr3.3:17164403-17164422 | MS.gene28203:intron | 60.0% | |
| TGGATGGATGCCCGAGACGT+TGG | + | chr3.3:17165749-17165768 | None:intergenic | 60.0% | |
| ! | TACGAGGAGGACGATTGGCC+TGG | - | chr3.3:17164416-17164435 | MS.gene28203:intron | 60.0% |
| !! | ACGAGGAGGACGATTGGCCT+GGG | - | chr3.3:17164417-17164436 | MS.gene28203:intron | 60.0% |
| !! | GGGCGCCGAACCATGTACTT+CGG | - | chr3.3:17164572-17164591 | MS.gene28203:intron | 60.0% |
| !! | GGGGGTTCTGAGTTGGTGTG+AGG | + | chr3.3:17165686-17165705 | None:intergenic | 60.0% |
| GGCCCCAATTTCACGCACCC+TGG | - | chr3.3:17164733-17164752 | MS.gene28203:intron | 65.0% | |
| GGGGCCCGAACTCTCCAGTT+CGG | + | chr3.3:17164719-17164738 | None:intergenic | 65.0% | |
| ! | CGGCAAGATGTGGCGGAGGT+CGG | + | chr3.3:17166886-17166905 | None:intergenic | 65.0% |
| ! | GGCAAGATGTGGCGGAGGTC+GGG | + | chr3.3:17166885-17166904 | None:intergenic | 65.0% |
| ! | GGCGCCGAACTGGAGAGTTC+GGG | - | chr3.3:17164712-17164731 | MS.gene28203:intron | 65.0% |
| !! | GGGCGCCGAACTGGAGAGTT+CGG | - | chr3.3:17164711-17164730 | MS.gene28203:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 17163015 | 17166935 | 17163015 | ID=MS.gene28203 |
| chr3.3 | mRNA | 17163015 | 17166935 | 17163015 | ID=MS.gene28203.t1;Parent=MS.gene28203 |
| chr3.3 | exon | 17166869 | 17166935 | 17166869 | ID=MS.gene28203.t1.exon1;Parent=MS.gene28203.t1 |
| chr3.3 | CDS | 17166869 | 17166935 | 17166869 | ID=cds.MS.gene28203.t1;Parent=MS.gene28203.t1 |
| chr3.3 | exon | 17166300 | 17166793 | 17166300 | ID=MS.gene28203.t1.exon2;Parent=MS.gene28203.t1 |
| chr3.3 | CDS | 17166300 | 17166793 | 17166300 | ID=cds.MS.gene28203.t1;Parent=MS.gene28203.t1 |
| chr3.3 | exon | 17165624 | 17166169 | 17165624 | ID=MS.gene28203.t1.exon3;Parent=MS.gene28203.t1 |
| chr3.3 | CDS | 17165624 | 17166169 | 17165624 | ID=cds.MS.gene28203.t1;Parent=MS.gene28203.t1 |
| chr3.3 | exon | 17163015 | 17163452 | 17163015 | ID=MS.gene28203.t1.exon4;Parent=MS.gene28203.t1 |
| chr3.3 | CDS | 17163015 | 17163452 | 17163015 | ID=cds.MS.gene28203.t1;Parent=MS.gene28203.t1 |
| Gene Sequence |
| Protein sequence |
