Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28841.t1 | AAK16221.1 | 99 | 194 | 2 | 0 | 1 | 194 | 1 | 194 | 6.40E-101 | 376.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28841.t1 | Q9ZST4 | 65.4 | 188 | 62 | 2 | 2 | 186 | 3 | 190 | 2.6e-58 | 226.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28841.t1 | Q9ARI4 | 99.0 | 194 | 2 | 0 | 1 | 194 | 1 | 194 | 4.6e-101 | 376.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene28841 | 0.817853 | 2.66E-52 | -1.69E-46 |
| MS.gene050438 | MS.gene28841 | 0.945847 | 1.42E-104 | -1.69E-46 |
| MS.gene050558 | MS.gene28841 | 0.801031 | 1.09E-48 | -1.69E-46 |
| MS.gene050586 | MS.gene28841 | 0.808544 | 2.94E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene28841 | 0.813013 | 3.17E-51 | -1.69E-46 |
| MS.gene050959 | MS.gene28841 | 0.803565 | 3.28E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene28841 | 0.80374 | 3.02E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene28841 | 0.806446 | 8.20E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene28841 | 0.803909 | 2.78E-49 | -1.69E-46 |
| MS.gene053074 | MS.gene28841 | 0.807329 | 5.33E-50 | -1.69E-46 |
| MS.gene053630 | MS.gene28841 | 0.815332 | 9.76E-52 | -1.69E-46 |
| MS.gene056069 | MS.gene28841 | -0.800565 | 1.36E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28841.t1 | MTR_7g109970 | 96.907 | 194 | 6 | 0 | 1 | 194 | 1 | 194 | 3.00e-136 | 379 |
| MS.gene28841.t1 | MTR_7g109970 | 94.330 | 194 | 6 | 1 | 1 | 194 | 1 | 189 | 5.52e-130 | 363 |
| MS.gene28841.t1 | MTR_7g109970 | 96.933 | 163 | 5 | 0 | 1 | 163 | 1 | 163 | 3.49e-114 | 322 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28841.t1 | AT4G01900 | 65.426 | 188 | 62 | 2 | 2 | 186 | 3 | 190 | 5.34e-79 | 234 |
Find 57 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAGGGTTTGTTGAAAA+TGG | 0.110086 | 7.4:+5503964 | MS.gene28841:intron |
| AAGCATTTCCGTTGCTTCTT+AGG | 0.201591 | 7.4:-5502456 | None:intergenic |
| GAGCAGGCTGAGAGGATGGC+TGG | 0.291038 | 7.4:+5505384 | MS.gene28841:CDS |
| TGTCAAGGGGTTTGGTGCTC+AGG | 0.292542 | 7.4:+5504012 | MS.gene28841:CDS |
| GGCAGTGATAAACAAAATTA+TGG | 0.303869 | 7.4:+5504966 | MS.gene28841:CDS |
| ACTTTGTAAAACTTGGATTC+AGG | 0.343647 | 7.4:-5502603 | None:intergenic |
| ATGACGCTGAAGCTTGAAAA+AGG | 0.344708 | 7.4:-5502394 | None:intergenic |
| GGCTTCAACTTTGTAAAACT+TGG | 0.345055 | 7.4:-5502610 | None:intergenic |
| TTGAAGGGTTTGTTGAAAAT+GGG | 0.351307 | 7.4:+5503965 | MS.gene28841:intron |
| ATTAGAGCTCAAAACCTTCC+TGG | 0.371130 | 7.4:+5502493 | MS.gene28841:CDS |
| ATTATGGAGACGGCAAGAAC+TGG | 0.371236 | 7.4:+5504982 | MS.gene28841:CDS |
| ATTCTTATTACATCAGATAC+AGG | 0.377029 | 7.4:-5505246 | None:intergenic |
| GTATCTGATGTCAAGGGGTT+TGG | 0.410939 | 7.4:+5504004 | MS.gene28841:CDS |
| GCAGGCTGAGAGGATGGCTG+GGG | 0.412639 | 7.4:+5505386 | MS.gene28841:CDS |
| CTCAGGTGAGCGTGGGGAGC+AGG | 0.426072 | 7.4:+5505368 | MS.gene28841:intron |
| AGCGTCATTCGCAAGCGTTT+CGG | 0.427268 | 7.4:+5502409 | MS.gene28841:CDS |
| TTCAAACCGTTGAACACGTT+CGG | 0.428080 | 7.4:-5502346 | None:intergenic |
| ACGGCAAGAACTGGGGAGAT+TGG | 0.438088 | 7.4:+5504991 | MS.gene28841:CDS |
| GTCAAGGGGTTTGGTGCTCA+GGG | 0.446794 | 7.4:+5504013 | MS.gene28841:CDS |
| GGGTGGCTCAAAAGAGAGGC+AGG | 0.447663 | 7.4:+5504033 | MS.gene28841:CDS |
| ACAAAGTTGAAGCCATTCTC+AGG | 0.467569 | 7.4:+5502619 | MS.gene28841:CDS |
| GAGAATCCCTCAGGTTTCTT+CGG | 0.476128 | 7.4:+5502746 | MS.gene28841:CDS |
| CAAAGTTAAAATGGAAATAG+TGG | 0.476633 | 7.4:+5504508 | MS.gene28841:CDS |
| AGCAGGCTGAGAGGATGGCT+GGG | 0.478955 | 7.4:+5505385 | MS.gene28841:CDS |
| AAGAAGCAACGGAAATGCTT+CGG | 0.517017 | 7.4:+5502459 | MS.gene28841:CDS |
| GCGAAACCGAACGTGTTCAA+CGG | 0.522571 | 7.4:+5502340 | MS.gene28841:CDS |
| TTATGGAGACGGCAAGAACT+GGG | 0.538464 | 7.4:+5504983 | MS.gene28841:CDS |
| TGGGGAGCAGGCTGAGAGGA+TGG | 0.538555 | 7.4:+5505380 | MS.gene28841:CDS |
| CAGGCCATGGAGAATCCCTC+AGG | 0.546227 | 7.4:+5502737 | MS.gene28841:intron |
| TTGTTGAAAATGGGAATTCG+TGG | 0.546383 | 7.4:+5503974 | MS.gene28841:CDS |
| TGTCACTGTATCTGATGTCA+AGG | 0.549422 | 7.4:+5503997 | MS.gene28841:CDS |
| TACGAATTCTCAGGTGAGCG+TGG | 0.552687 | 7.4:+5505360 | MS.gene28841:intron |
| GTCACTGTATCTGATGTCAA+GGG | 0.559409 | 7.4:+5503998 | MS.gene28841:CDS |
| ACGAATTCTCAGGTGAGCGT+GGG | 0.562826 | 7.4:+5505361 | MS.gene28841:intron |
| CAAACATACAACGCGTCAGT+TGG | 0.572080 | 7.4:-5505411 | None:intergenic |
| GATAAACAAAATTATGGAGA+CGG | 0.573347 | 7.4:+5504972 | MS.gene28841:CDS |
| CAGGCTGAGAGGATGGCTGG+GGG | 0.573490 | 7.4:+5505387 | MS.gene28841:CDS |
| AGAGTGTTATAACCTGAGAA+TGG | 0.584237 | 7.4:-5502631 | None:intergenic |
| AAGGGGTTTGGTGCTCAGGG+TGG | 0.584971 | 7.4:+5504016 | MS.gene28841:CDS |
| CTCAGGGTGGCTCAAAAGAG+AGG | 0.595032 | 7.4:+5504029 | MS.gene28841:CDS |
| AGAACTGGGGAGATTGGTGA+TGG | 0.606984 | 7.4:+5504997 | MS.gene28841:CDS |
| GGTGGCTCAAAAGAGAGGCA+GGG | 0.611036 | 7.4:+5504034 | MS.gene28841:CDS |
| GAAACCTGAGGGATTCTCCA+TGG | 0.612179 | 7.4:-5502741 | None:intergenic |
| AATAGTGGTGAGAAAAGACC+AGG | 0.614772 | 7.4:+5504523 | MS.gene28841:CDS |
| GAAAGGAAATCGAACCAGGA+AGG | 0.619778 | 7.4:-5502507 | None:intergenic |
| CGAATTCTCAGGTGAGCGTG+GGG | 0.630631 | 7.4:+5505362 | MS.gene28841:intron |
| TCACTGTATCTGATGTCAAG+GGG | 0.633367 | 7.4:+5503999 | MS.gene28841:CDS |
| TTCTTATTACATCAGATACA+GGG | 0.641858 | 7.4:-5505245 | None:intergenic |
| AATGTGGTCCTAAGAAGCAA+CGG | 0.643539 | 7.4:+5502448 | MS.gene28841:CDS |
| GATGTAATAAGAATCCGCAC+AGG | 0.649812 | 7.4:+5505255 | MS.gene28841:CDS |
| AGCGTGGGGAGCAGGCTGAG+AGG | 0.654625 | 7.4:+5505376 | MS.gene28841:CDS |
| TATGGAGACGGCAAGAACTG+GGG | 0.666410 | 7.4:+5504984 | MS.gene28841:CDS |
| GGCTCAAAAGAGAGGCAGGG+AGG | 0.670235 | 7.4:+5504037 | MS.gene28841:CDS |
| GTATTACCGAAGAAACCTGA+GGG | 0.672298 | 7.4:-5502752 | None:intergenic |
| GGAGCAAATGGTTACCTGTG+CGG | 0.676931 | 7.4:-5505269 | None:intergenic |
| TGTATTACCGAAGAAACCTG+AGG | 0.679907 | 7.4:-5502753 | None:intergenic |
| AGATTCTTCTCATCGCAATG+TGG | 0.698371 | 7.4:+5502432 | MS.gene28841:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAGTTAATAAATTAATTAT+TGG | + | chr7.4:5503059-5503078 | MS.gene28841:intron | 10.0% |
| !! | TTTCATAATAAAATAGTTTA+AGG | + | chr7.4:5505117-5505136 | MS.gene28841:intron | 10.0% |
| !!! | TTTTTATTGTAAAATTTGAA+GGG | + | chr7.4:5503950-5503969 | MS.gene28841:intron | 10.0% |
| !!! | TTTTTTATTGTAAAATTTGA+AGG | + | chr7.4:5503949-5503968 | MS.gene28841:intron | 10.0% |
| !! | AGATTCTAATAAAAAATATC+AGG | - | chr7.4:5505098-5505117 | None:intergenic | 15.0% |
| !! | ATAATAAAATAGTTTAAGGA+GGG | + | chr7.4:5505121-5505140 | MS.gene28841:intron | 15.0% |
| !! | TCAGTCAATAAATTAATTAT+TGG | + | chr7.4:5503031-5503050 | MS.gene28841:intron | 15.0% |
| !!! | AGTTTTATCATTAATAGAAT+GGG | + | chr7.4:5503771-5503790 | MS.gene28841:intron | 15.0% |
| !!! | ATGTTAATTGTTTAGAATAT+TGG | - | chr7.4:5504609-5504628 | None:intergenic | 15.0% |
| !!! | ATTTTGTTTGTAATTAAAAG+TGG | - | chr7.4:5504896-5504915 | None:intergenic | 15.0% |
| !!! | TAGTTTTATCATTAATAGAA+TGG | + | chr7.4:5503770-5503789 | MS.gene28841:intron | 15.0% |
| !!! | TGTTAATTGTTTAGAATATT+GGG | - | chr7.4:5504608-5504627 | None:intergenic | 15.0% |
| !! | AAAGTTACAAACATAAAACA+CGG | - | chr7.4:5504314-5504333 | None:intergenic | 20.0% |
| !! | AATAGTTTAGTGATGAAATA+TGG | - | chr7.4:5504185-5504204 | None:intergenic | 20.0% |
| !! | CATAATAAAATAGTTTAAGG+AGG | + | chr7.4:5505120-5505139 | MS.gene28841:intron | 20.0% |
| !! | TAAAACTACTAAACTCAATT+TGG | + | chr7.4:5505180-5505199 | MS.gene28841:intron | 20.0% |
| !! | TAACTGTTATGTTAATTAGT+TGG | + | chr7.4:5503092-5503111 | MS.gene28841:intron | 20.0% |
| !!! | AATTACATTTTTCCTTCATT+TGG | + | chr7.4:5504362-5504381 | MS.gene28841:intron | 20.0% |
| !!! | ATTACATTTTTCCTTCATTT+GGG | + | chr7.4:5504363-5504382 | MS.gene28841:intron | 20.0% |
| !!! | ATTGTTTAGATCTATTGATT+TGG | + | chr7.4:5504639-5504658 | MS.gene28841:intron | 20.0% |
| !!! | TATATATCATGCATTTTTTC+AGG | + | chr7.4:5504939-5504958 | MS.gene28841:intron | 20.0% |
| !!! | TCTTGTTATTTTCACTAAAT+CGG | + | chr7.4:5502827-5502846 | MS.gene28841:intron | 20.0% |
| !!! | TTGTTTAGATCTATTGATTT+GGG | + | chr7.4:5504640-5504659 | MS.gene28841:intron | 20.0% |
| ! | AAATTCAGTATATTAGCAGA+AGG | - | chr7.4:5503932-5503951 | None:intergenic | 25.0% |
| ! | ACAAATTCATGTTAAGAGTT+TGG | + | chr7.4:5504125-5504144 | MS.gene28841:intron | 25.0% |
| ! | ATATAGATGAACATAGCAAT+AGG | - | chr7.4:5502532-5502551 | None:intergenic | 25.0% |
| ! | ATTCTTATTACATCAGATAC+AGG | - | chr7.4:5505249-5505268 | None:intergenic | 25.0% |
| ! | ATTTGTCTTAGAAGTTAACA+AGG | - | chr7.4:5504111-5504130 | None:intergenic | 25.0% |
| ! | CAAAGTTAAAATGGAAATAG+TGG | + | chr7.4:5504508-5504527 | MS.gene28841:CDS | 25.0% |
| ! | GATAAACAAAATTATGGAGA+CGG | + | chr7.4:5504972-5504991 | MS.gene28841:CDS | 25.0% |
| ! | GCAAATTCAGTTAACTATTA+TGG | + | chr7.4:5502911-5502930 | MS.gene28841:intron | 25.0% |
| ! | GTGTTTGAATTATTTAGTAG+TGG | + | chr7.4:5504849-5504868 | MS.gene28841:intron | 25.0% |
| ! | GTTAGTATTTATAGCCATAA+GGG | + | chr7.4:5503254-5503273 | MS.gene28841:intron | 25.0% |
| ! | TAACTAACACTGTTAATCTA+AGG | - | chr7.4:5502998-5503017 | None:intergenic | 25.0% |
| ! | TGGAAATAAATTATACGTCA+TGG | + | chr7.4:5505051-5505070 | MS.gene28841:intron | 25.0% |
| ! | TTAGTATTTATAGCCATAAG+GGG | + | chr7.4:5503255-5503274 | MS.gene28841:intron | 25.0% |
| ! | TTCTTATTACATCAGATACA+GGG | - | chr7.4:5505248-5505267 | None:intergenic | 25.0% |
| ! | TTTGTCTTAGAAGTTAACAA+GGG | - | chr7.4:5504110-5504129 | None:intergenic | 25.0% |
| !! | CATATATGTATTTTTCATCC+AGG | + | chr7.4:5503896-5503915 | MS.gene28841:intron | 25.0% |
| !! | CTAAATTCTGTTAGTGTTTT+TGG | + | chr7.4:5502945-5502964 | MS.gene28841:intron | 25.0% |
| !! | CTATTGAAAATGAAACCTTT+TGG | - | chr7.4:5503674-5503693 | None:intergenic | 25.0% |
| !! | TATTGCTACAAATACTTTTG+TGG | + | chr7.4:5503724-5503743 | MS.gene28841:intron | 25.0% |
| !! | TTTTGTTGCCAAAGTTAAAA+TGG | + | chr7.4:5504499-5504518 | MS.gene28841:CDS | 25.0% |
| !!! | AAAGAGCAAGTGTTTTTTTA+AGG | - | chr7.4:5504236-5504255 | None:intergenic | 25.0% |
| !!! | AGTTTTAAATACGAATTCTC+AGG | + | chr7.4:5505351-5505370 | MS.gene28841:intron | 25.0% |
| !!! | CACTATTTCCATTTTAACTT+TGG | - | chr7.4:5504510-5504529 | None:intergenic | 25.0% |
| !!! | TATGTTTTTAGAGAATTCAC+TGG | - | chr7.4:5505293-5505312 | None:intergenic | 25.0% |
| !!! | TCTTTTTTTCTACTTCCAAA+AGG | + | chr7.4:5503656-5503675 | MS.gene28841:intron | 25.0% |
| AAATGTTAGCGCACAAATTT+AGG | + | chr7.4:5504267-5504286 | MS.gene28841:intron | 30.0% | |
| AAGTACAAACTCAAAAGTCA+TGG | - | chr7.4:5503821-5503840 | None:intergenic | 30.0% | |
| AATTCATGTTAAGAGTTTGG+AGG | + | chr7.4:5504128-5504147 | MS.gene28841:intron | 30.0% | |
| ACTTTGTAAAACTTGGATTC+AGG | - | chr7.4:5502606-5502625 | None:intergenic | 30.0% | |
| GGCAGTGATAAACAAAATTA+TGG | + | chr7.4:5504966-5504985 | MS.gene28841:CDS | 30.0% | |
| GGTTAGTATTTATAGCCATA+AGG | + | chr7.4:5503253-5503272 | MS.gene28841:intron | 30.0% | |
| GTCGTATTGTTCTTAATGAA+GGG | + | chr7.4:5503576-5503595 | MS.gene28841:intron | 30.0% | |
| TAGTATTTATAGCCATAAGG+GGG | + | chr7.4:5503256-5503275 | MS.gene28841:intron | 30.0% | |
| TATGATAAGACCATTACCAT+TGG | + | chr7.4:5504723-5504742 | MS.gene28841:intron | 30.0% | |
| TTATTTCCAGCAAAAGATGT+TGG | - | chr7.4:5505040-5505059 | None:intergenic | 30.0% | |
| TTCTTGACATTGTTTACAAG+TGG | + | chr7.4:5502875-5502894 | MS.gene28841:intron | 30.0% | |
| ! | ATAGAGCACTAAATTTAGGT+CGG | - | chr7.4:5504084-5504103 | None:intergenic | 30.0% |
| ! | GTGAATAGAGCACTAAATTT+AGG | - | chr7.4:5504088-5504107 | None:intergenic | 30.0% |
| ! | TGATGGCAAAATTTTCTGTA+AGG | + | chr7.4:5505014-5505033 | MS.gene28841:intron | 30.0% |
| ! | TTCAATAGATTTTCAGCAGT+TGG | + | chr7.4:5503686-5503705 | MS.gene28841:intron | 30.0% |
| ! | TTTCTTGTTTGAACATGAAC+AGG | + | chr7.4:5502718-5502737 | MS.gene28841:intron | 30.0% |
| !! | AATAATTGGTTTGGTCAATG+CGG | + | chr7.4:5503871-5503890 | MS.gene28841:intron | 30.0% |
| !! | ATTTTTCCTTCATTTGGGAT+TGG | + | chr7.4:5504368-5504387 | MS.gene28841:intron | 30.0% |
| !! | GTAAAGCACAAACTTTTTCT+TGG | + | chr7.4:5504699-5504718 | MS.gene28841:intron | 30.0% |
| !! | TTGAAGGGTTTGTTGAAAAT+GGG | + | chr7.4:5503965-5503984 | MS.gene28841:intron | 30.0% |
| !! | TTTGAAGGGTTTGTTGAAAA+TGG | + | chr7.4:5503964-5503983 | MS.gene28841:intron | 30.0% |
| !!! | AAGGTTTTGAGCTCTAATTT+TGG | - | chr7.4:5502491-5502510 | None:intergenic | 30.0% |
| !!! | AGGTTTTGAGCTCTAATTTT+GGG | - | chr7.4:5502490-5502509 | None:intergenic | 30.0% |
| !!! | GTTTTTTTGGCTAGATCTAT+TGG | + | chr7.4:5504671-5504690 | MS.gene28841:intron | 30.0% |
| AAACAATGTCAAGAAACCAC+AGG | - | chr7.4:5502870-5502889 | None:intergenic | 35.0% | |
| ACCAATTATTCGAGAGGTAA+AGG | - | chr7.4:5503861-5503880 | None:intergenic | 35.0% | |
| ACCTTTACCTCTCGAATAAT+TGG | + | chr7.4:5503857-5503876 | MS.gene28841:intron | 35.0% | |
| ACTAGGATAGGATAACTATC+AGG | + | chr7.4:5503311-5503330 | MS.gene28841:intron | 35.0% | |
| CAGACTAGGTTAATCTGTTT+AGG | + | chr7.4:5503201-5503220 | MS.gene28841:intron | 35.0% | |
| CTAGGATAGGATAACTATCA+GGG | + | chr7.4:5503312-5503331 | MS.gene28841:intron | 35.0% | |
| GATGAACATAGCAATAGGAA+AGG | - | chr7.4:5502527-5502546 | None:intergenic | 35.0% | |
| GGCTTCAACTTTGTAAAACT+TGG | - | chr7.4:5502613-5502632 | None:intergenic | 35.0% | |
| GGTCGTATTGTTCTTAATGA+AGG | + | chr7.4:5503575-5503594 | MS.gene28841:intron | 35.0% | |
| TACAAACCAATCCCAAATGA+AGG | - | chr7.4:5504377-5504396 | None:intergenic | 35.0% | |
| TACCTCTCGAATAATTGGTT+TGG | + | chr7.4:5503862-5503881 | MS.gene28841:intron | 35.0% | |
| TCATTAAGAACAATACGACC+TGG | - | chr7.4:5503575-5503594 | None:intergenic | 35.0% | |
| TGAATGGAATCAATTTGGAC+CGG | - | chr7.4:5503627-5503646 | None:intergenic | 35.0% | |
| TGAGTACGATTTATCAGACT+AGG | + | chr7.4:5503187-5503206 | MS.gene28841:intron | 35.0% | |
| TTGACATTGTTTACAAGTGG+TGG | + | chr7.4:5502878-5502897 | MS.gene28841:intron | 35.0% | |
| TTGGATAAACCCTCTATTCT+AGG | + | chr7.4:5503279-5503298 | MS.gene28841:intron | 35.0% | |
| TTGTTGAAAATGGGAATTCG+TGG | + | chr7.4:5503974-5503993 | MS.gene28841:CDS | 35.0% | |
| ! | AGAGTGTTATAACCTGAGAA+TGG | - | chr7.4:5502634-5502653 | None:intergenic | 35.0% |
| ! | TGACATTTGGTAGTAATCAC+TGG | + | chr7.4:5504551-5504570 | MS.gene28841:intron | 35.0% |
| !! | TGCTTCTAGAATATGCTCAT+TGG | + | chr7.4:5503343-5503362 | MS.gene28841:intron | 35.0% |
| !! | TTGGGATTGGTTTGTATACT+TGG | + | chr7.4:5504381-5504400 | MS.gene28841:intron | 35.0% |
| !!! | TCATGCATTTTTTCAGGTTG+AGG | + | chr7.4:5504945-5504964 | MS.gene28841:intron | 35.0% |
| !!! | TTGGGTCTTCTCAGTTTTTT+TGG | + | chr7.4:5504658-5504677 | MS.gene28841:intron | 35.0% |
| AAAAAGAGAGAGACGCTGAA+TGG | - | chr7.4:5503643-5503662 | None:intergenic | 40.0% | |
| AACGTAGGAACCAATGGTAA+TGG | - | chr7.4:5504736-5504755 | None:intergenic | 40.0% | |
| AACTAAGCGCCTAGAATAGA+GGG | - | chr7.4:5503291-5503310 | None:intergenic | 40.0% | |
| AAGAAGCAACGGAAATGCTT+CGG | + | chr7.4:5502459-5502478 | MS.gene28841:CDS | 40.0% | |
| AAGCATTTCCGTTGCTTCTT+AGG | - | chr7.4:5502459-5502478 | None:intergenic | 40.0% | |
| AATAGTGGTGAGAAAAGACC+AGG | + | chr7.4:5504523-5504542 | MS.gene28841:CDS | 40.0% | |
| AATGTGGTCCTAAGAAGCAA+CGG | + | chr7.4:5502448-5502467 | MS.gene28841:CDS | 40.0% | |
| ACAAAGTTGAAGCCATTCTC+AGG | + | chr7.4:5502619-5502638 | MS.gene28841:CDS | 40.0% | |
| ACATAAAACACGGCTGAAGT+TGG | - | chr7.4:5504304-5504323 | None:intergenic | 40.0% | |
| AGAGAATTCACTGGAGCAAA+TGG | - | chr7.4:5505284-5505303 | None:intergenic | 40.0% | |
| AGATTCTTCTCATCGCAATG+TGG | + | chr7.4:5502432-5502451 | MS.gene28841:CDS | 40.0% | |
| AGTATATTAGCAGAAGGCCA+AGG | - | chr7.4:5503926-5503945 | None:intergenic | 40.0% | |
| ATAGGAAAGGAAATCGAACC+AGG | - | chr7.4:5502514-5502533 | None:intergenic | 40.0% | |
| ATGACGCTGAAGCTTGAAAA+AGG | - | chr7.4:5502397-5502416 | None:intergenic | 40.0% | |
| ATTAGAGCTCAAAACCTTCC+TGG | + | chr7.4:5502493-5502512 | MS.gene28841:CDS | 40.0% | |
| ATTCTAGGCGCTTAGTTACT+AGG | + | chr7.4:5503294-5503313 | MS.gene28841:intron | 40.0% | |
| ATTTATAGCCATAAGGGGGT+TGG | + | chr7.4:5503260-5503279 | MS.gene28841:intron | 40.0% | |
| CACCACTGAACTGAAGAAAA+CGG | - | chr7.4:5504832-5504851 | None:intergenic | 40.0% | |
| CATAAAACACGGCTGAAGTT+GGG | - | chr7.4:5504303-5504322 | None:intergenic | 40.0% | |
| GAAGAATACACCATCAGTGA+AGG | - | chr7.4:5504453-5504472 | None:intergenic | 40.0% | |
| GAATGGAATCAATTTGGACC+GGG | - | chr7.4:5503626-5503645 | None:intergenic | 40.0% | |
| GACCAAACCAATTATTCGAG+AGG | - | chr7.4:5503867-5503886 | None:intergenic | 40.0% | |
| GACGCTGAATGGAATCAATT+TGG | - | chr7.4:5503632-5503651 | None:intergenic | 40.0% | |
| GATGTAATAAGAATCCGCAC+AGG | + | chr7.4:5505255-5505274 | MS.gene28841:CDS | 40.0% | |
| GTATATTAGCAGAAGGCCAA+GGG | - | chr7.4:5503925-5503944 | None:intergenic | 40.0% | |
| GTATTACCGAAGAAACCTGA+GGG | - | chr7.4:5502755-5502774 | None:intergenic | 40.0% | |
| GTCACTGTATCTGATGTCAA+GGG | + | chr7.4:5503998-5504017 | MS.gene28841:CDS | 40.0% | |
| GTCATCTATGAGTTCAGAAG+AGG | - | chr7.4:5504764-5504783 | None:intergenic | 40.0% | |
| TAACCTTGAGAGCTTTCTCA+AGG | - | chr7.4:5503238-5503257 | None:intergenic | 40.0% | |
| TAACTAAGCGCCTAGAATAG+AGG | - | chr7.4:5503292-5503311 | None:intergenic | 40.0% | |
| TCACTGTATCTGATGTCAAG+GGG | + | chr7.4:5503999-5504018 | MS.gene28841:CDS | 40.0% | |
| TGTATTACCGAAGAAACCTG+AGG | - | chr7.4:5502756-5502775 | None:intergenic | 40.0% | |
| TGTCACTGTATCTGATGTCA+AGG | + | chr7.4:5503997-5504016 | MS.gene28841:CDS | 40.0% | |
| TTCAAACCGTTGAACACGTT+CGG | - | chr7.4:5502349-5502368 | None:intergenic | 40.0% | |
| ! | AACCGTTTTCTTCAGTTCAG+TGG | + | chr7.4:5504827-5504846 | MS.gene28841:intron | 40.0% |
| ! | AATGGGTTCATTACCCTCTT+GGG | + | chr7.4:5503788-5503807 | MS.gene28841:intron | 40.0% |
| ! | ACTGATGGTGTATTCTTCAC+AGG | + | chr7.4:5504455-5504474 | MS.gene28841:intron | 40.0% |
| ! | CGAAGTGCTTTAGTCTAGAT+AGG | + | chr7.4:5503511-5503530 | MS.gene28841:intron | 40.0% |
| ! | TATTCGAGAGGTAAAGGTAC+TGG | - | chr7.4:5503855-5503874 | None:intergenic | 40.0% |
| !! | ATTCGAGAGGTAAAGGTACT+GGG | - | chr7.4:5503854-5503873 | None:intergenic | 40.0% |
| ACATCCTTGTCCTTCACTGA+TGG | + | chr7.4:5504440-5504459 | MS.gene28841:intron | 45.0% | |
| ACCATAAGCGCCCTTCTAAA+GGG | - | chr7.4:5503405-5503424 | None:intergenic | 45.0% | |
| AGCTAAGGCGACGTCTTTAT+AGG | - | chr7.4:5503374-5503393 | None:intergenic | 45.0% | |
| AGGACACAACGCCATTCATA+AGG | - | chr7.4:5503437-5503456 | None:intergenic | 45.0% | |
| AGGCGCTTAGTTACTAGGAT+AGG | + | chr7.4:5503299-5503318 | MS.gene28841:intron | 45.0% | |
| ATGCCTTGAGAAAGCTCTCA+AGG | + | chr7.4:5503232-5503251 | MS.gene28841:intron | 45.0% | |
| ATGGCGTTGTGTCCTTTATC+CGG | + | chr7.4:5503442-5503461 | MS.gene28841:intron | 45.0% | |
| ATTATGGAGACGGCAAGAAC+TGG | + | chr7.4:5504982-5505001 | MS.gene28841:CDS | 45.0% | |
| CAAACATACAACGCGTCAGT+TGG | - | chr7.4:5505414-5505433 | None:intergenic | 45.0% | |
| CTACCAAATGTCAACACACC+TGG | - | chr7.4:5504544-5504563 | None:intergenic | 45.0% | |
| GAAAGGAAATCGAACCAGGA+AGG | - | chr7.4:5502510-5502529 | None:intergenic | 45.0% | |
| GAGAATCCCTCAGGTTTCTT+CGG | + | chr7.4:5502746-5502765 | MS.gene28841:CDS | 45.0% | |
| GCTGAAAACGTAGGAACCAA+TGG | - | chr7.4:5504742-5504761 | None:intergenic | 45.0% | |
| GGACACAACGCCATTCATAA+GGG | - | chr7.4:5503436-5503455 | None:intergenic | 45.0% | |
| GTATCTGATGTCAAGGGGTT+TGG | + | chr7.4:5504004-5504023 | MS.gene28841:CDS | 45.0% | |
| GTCACTTGAGCCCTTATGAA+TGG | + | chr7.4:5503423-5503442 | MS.gene28841:intron | 45.0% | |
| GTTTGAACATGAACAGGCCA+TGG | + | chr7.4:5502724-5502743 | MS.gene28841:intron | 45.0% | |
| TACACCATCAGTGAAGGACA+AGG | - | chr7.4:5504447-5504466 | None:intergenic | 45.0% | |
| TCAGAAGAGGCTGAAAACGT+AGG | - | chr7.4:5504751-5504770 | None:intergenic | 45.0% | |
| TGCATTGTCTTTGATGCCTG+TGG | + | chr7.4:5502851-5502870 | MS.gene28841:intron | 45.0% | |
| TTATGGAGACGGCAAGAACT+GGG | + | chr7.4:5504983-5505002 | MS.gene28841:CDS | 45.0% | |
| TTCACGTGTTTCCCTTGCTT+CGG | + | chr7.4:5503543-5503562 | MS.gene28841:intron | 45.0% | |
| TTGAGAGCTTTCTCAAGGCA+TGG | - | chr7.4:5503233-5503252 | None:intergenic | 45.0% | |
| ! | AGACCAGGTGTGTTGACATT+TGG | + | chr7.4:5504538-5504557 | MS.gene28841:intron | 45.0% |
| ! | GAATGGGTTCATTACCCTCT+TGG | + | chr7.4:5503787-5503806 | MS.gene28841:intron | 45.0% |
| ! | GTAAGGCCAACATCTTTTGC+TGG | + | chr7.4:5505031-5505050 | MS.gene28841:intron | 45.0% |
| ! | TTTTTCATCCAGGAAGCCCT+TGG | + | chr7.4:5503906-5503925 | MS.gene28841:intron | 45.0% |
| !! | TTCGAGAGGTAAAGGTACTG+GGG | - | chr7.4:5503853-5503872 | None:intergenic | 45.0% |
| !! | AAAAAAAAAATATATGAAAA+AGG | - | chr7.4:5502783-5502802 | None:intergenic | 5.0% |
| AAAACACGGCTGAAGTTGGG+TGG | - | chr7.4:5504300-5504319 | None:intergenic | 50.0% | |
| ACGAATTCTCAGGTGAGCGT+GGG | + | chr7.4:5505361-5505380 | MS.gene28841:intron | 50.0% | |
| AGAACAATACGACCTGGAGC+AGG | - | chr7.4:5503569-5503588 | None:intergenic | 50.0% | |
| AGAACTGGGGAGATTGGTGA+TGG | + | chr7.4:5504997-5505016 | MS.gene28841:CDS | 50.0% | |
| AGCGCACAAATTTAGGCCTG+TGG | + | chr7.4:5504274-5504293 | MS.gene28841:intron | 50.0% | |
| AGCGTCATTCGCAAGCGTTT+CGG | + | chr7.4:5502409-5502428 | MS.gene28841:CDS | 50.0% | |
| CAATTTGGACCGGGAAAACC+CGG | - | chr7.4:5503617-5503636 | None:intergenic | 50.0% | |
| GAAACCTGAGGGATTCTCCA+TGG | - | chr7.4:5502744-5502763 | None:intergenic | 50.0% | |
| GACCATAAGCGCCCTTCTAA+AGG | - | chr7.4:5503406-5503425 | None:intergenic | 50.0% | |
| GCGAAACCGAACGTGTTCAA+CGG | + | chr7.4:5502340-5502359 | MS.gene28841:CDS | 50.0% | |
| GGAGCAAATGGTTACCTGTG+CGG | - | chr7.4:5505272-5505291 | None:intergenic | 50.0% | |
| GGGTTTATCCAACCCCCTTA+TGG | - | chr7.4:5503271-5503290 | None:intergenic | 50.0% | |
| TAAAGGGCCGAAGCAAGCTA+AGG | - | chr7.4:5503389-5503408 | None:intergenic | 50.0% | |
| TACGAATTCTCAGGTGAGCG+TGG | + | chr7.4:5505360-5505379 | MS.gene28841:intron | 50.0% | |
| TATGGAGACGGCAAGAACTG+GGG | + | chr7.4:5504984-5505003 | MS.gene28841:CDS | 50.0% | |
| TCATGGATCTCGTCCCAAGA+GGG | - | chr7.4:5503804-5503823 | None:intergenic | 50.0% | |
| TGGCGTTGTGTCCTTTATCC+GGG | + | chr7.4:5503443-5503462 | MS.gene28841:intron | 50.0% | |
| ! | CTTGCTTCGGCCCTTTAGAA+GGG | + | chr7.4:5503392-5503411 | MS.gene28841:intron | 50.0% |
| ! | GTCCTTTATCCGGGTTTTCC+CGG | + | chr7.4:5503452-5503471 | MS.gene28841:intron | 50.0% |
| AAGCACTTCGCCTTGTCCCA+AGG | - | chr7.4:5503501-5503520 | None:intergenic | 55.0% | |
| ACGGCAAGAACTGGGGAGAT+TGG | + | chr7.4:5504991-5505010 | MS.gene28841:CDS | 55.0% | |
| CACCGGGAAAACCCGGATAA+AGG | - | chr7.4:5503457-5503476 | None:intergenic | 55.0% | |
| CGAATTCTCAGGTGAGCGTG+GGG | + | chr7.4:5505362-5505381 | MS.gene28841:intron | 55.0% | |
| CTCAGGGTGGCTCAAAAGAG+AGG | + | chr7.4:5504029-5504048 | MS.gene28841:CDS | 55.0% | |
| GAGAGGCAGGGAGGTAAGTA+CGG | + | chr7.4:5504046-5504065 | MS.gene28841:intron | 55.0% | |
| GCTTGCTTCGGCCCTTTAGA+AGG | + | chr7.4:5503391-5503410 | MS.gene28841:intron | 55.0% | |
| GGTGGCTCAAAAGAGAGGCA+GGG | + | chr7.4:5504034-5504053 | MS.gene28841:CDS | 55.0% | |
| GTCATGGATCTCGTCCCAAG+AGG | - | chr7.4:5503805-5503824 | None:intergenic | 55.0% | |
| TTGTCCCAAGGCTCGTGCTT+GGG | - | chr7.4:5503489-5503508 | None:intergenic | 55.0% | |
| !! | GACGTCGCCTTAGCTTGCTT+CGG | + | chr7.4:5503379-5503398 | MS.gene28841:intron | 55.0% |
| !! | GCCCTTTAGAAGGGCGCTTA+TGG | + | chr7.4:5503401-5503420 | MS.gene28841:intron | 55.0% |
| !! | GTCAAGGGGTTTGGTGCTCA+GGG | + | chr7.4:5504013-5504032 | MS.gene28841:CDS | 55.0% |
| !! | TGTCAAGGGGTTTGGTGCTC+AGG | + | chr7.4:5504012-5504031 | MS.gene28841:CDS | 55.0% |
| ACCGGGAAAACCCGGATACG+GGG | - | chr7.4:5503609-5503628 | None:intergenic | 60.0% | |
| AGCAGGCTGAGAGGATGGCT+GGG | + | chr7.4:5505385-5505404 | MS.gene28841:CDS | 60.0% | |
| CAAGCACGAGCCTTGGGACA+AGG | + | chr7.4:5503488-5503507 | MS.gene28841:intron | 60.0% | |
| CAGGCCATGGAGAATCCCTC+AGG | + | chr7.4:5502737-5502756 | MS.gene28841:intron | 60.0% | |
| CTTGTCCCAAGGCTCGTGCT+TGG | - | chr7.4:5503490-5503509 | None:intergenic | 60.0% | |
| GACCGGGAAAACCCGGATAC+GGG | - | chr7.4:5503610-5503629 | None:intergenic | 60.0% | |
| GCTTGTGCACCGGGAAAACC+CGG | - | chr7.4:5503464-5503483 | None:intergenic | 60.0% | |
| GGACCGGGAAAACCCGGATA+CGG | - | chr7.4:5503611-5503630 | None:intergenic | 60.0% | |
| GGCTCAAAAGAGAGGCAGGG+AGG | + | chr7.4:5504037-5504056 | MS.gene28841:CDS | 60.0% | |
| GGGTGGCTCAAAAGAGAGGC+AGG | + | chr7.4:5504033-5504052 | MS.gene28841:CDS | 60.0% | |
| TGTCCCAAGGCTCGTGCTTG+GGG | - | chr7.4:5503488-5503507 | None:intergenic | 60.0% | |
| !! | AAGGGGTTTGGTGCTCAGGG+TGG | + | chr7.4:5504016-5504035 | MS.gene28841:CDS | 60.0% |
| ACCTGGAGCAGGCCGAAGCA+AGG | - | chr7.4:5503558-5503577 | None:intergenic | 65.0% | |
| CAGGCTGAGAGGATGGCTGG+GGG | + | chr7.4:5505387-5505406 | MS.gene28841:CDS | 65.0% | |
| CCTGGAGCAGGCCGAAGCAA+GGG | - | chr7.4:5503557-5503576 | None:intergenic | 65.0% | |
| GAGCAGGCTGAGAGGATGGC+TGG | + | chr7.4:5505384-5505403 | MS.gene28841:CDS | 65.0% | |
| GCAGAAGGCCAAGGGCTTCC+TGG | - | chr7.4:5503917-5503936 | None:intergenic | 65.0% | |
| GCAGGCTGAGAGGATGGCTG+GGG | + | chr7.4:5505386-5505405 | MS.gene28841:CDS | 65.0% | |
| GGCTGAAGTTGGGTGGCCAC+AGG | - | chr7.4:5504293-5504312 | None:intergenic | 65.0% | |
| GTCCCAAGGCTCGTGCTTGG+GGG | - | chr7.4:5503487-5503506 | None:intergenic | 65.0% | |
| TCCCAAGGCTCGTGCTTGGG+GGG | - | chr7.4:5503486-5503505 | None:intergenic | 65.0% | |
| TGCTTGGGGGGCTTGTGCAC+CGG | - | chr7.4:5503474-5503493 | None:intergenic | 65.0% | |
| TGGGGAGCAGGCTGAGAGGA+TGG | + | chr7.4:5505380-5505399 | MS.gene28841:CDS | 65.0% | |
| ! | GCCCCGTATCCGGGTTTTCC+CGG | + | chr7.4:5503605-5503624 | MS.gene28841:intron | 65.0% |
| !! | AGGGCACTGAGCCCCGTATC+CGG | + | chr7.4:5503595-5503614 | MS.gene28841:intron | 65.0% |
| AGCCCCCCAAGCACGAGCCT+TGG | + | chr7.4:5503481-5503500 | MS.gene28841:intron | 70.0% | |
| AGCGTGGGGAGCAGGCTGAG+AGG | + | chr7.4:5505376-5505395 | MS.gene28841:CDS | 70.0% | |
| CCCTTGCTTCGGCCTGCTCC+AGG | + | chr7.4:5503554-5503573 | MS.gene28841:intron | 70.0% | |
| CTCAGGTGAGCGTGGGGAGC+AGG | + | chr7.4:5505368-5505387 | MS.gene28841:intron | 70.0% | |
| GCCCCCCAAGCACGAGCCTT+GGG | + | chr7.4:5503482-5503501 | MS.gene28841:intron | 70.0% | |
| GCTTGGGGGGCTTGTGCACC+GGG | - | chr7.4:5503473-5503492 | None:intergenic | 70.0% | |
| !! | GGGCACTGAGCCCCGTATCC+GGG | + | chr7.4:5503596-5503615 | MS.gene28841:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 5502328 | 5505434 | 5502328 | ID=MS.gene28841 |
| chr7.4 | mRNA | 5502328 | 5505434 | 5502328 | ID=MS.gene28841.t1;Parent=MS.gene28841 |
| chr7.4 | exon | 5502328 | 5502514 | 5502328 | ID=MS.gene28841.t1.exon1;Parent=MS.gene28841.t1 |
| chr7.4 | CDS | 5502328 | 5502514 | 5502328 | ID=cds.MS.gene28841.t1;Parent=MS.gene28841.t1 |
| chr7.4 | exon | 5502595 | 5502640 | 5502595 | ID=MS.gene28841.t1.exon2;Parent=MS.gene28841.t1 |
| chr7.4 | CDS | 5502595 | 5502640 | 5502595 | ID=cds.MS.gene28841.t1;Parent=MS.gene28841.t1 |
| chr7.4 | exon | 5502740 | 5502767 | 5502740 | ID=MS.gene28841.t1.exon3;Parent=MS.gene28841.t1 |
| chr7.4 | CDS | 5502740 | 5502767 | 5502740 | ID=cds.MS.gene28841.t1;Parent=MS.gene28841.t1 |
| chr7.4 | exon | 5503971 | 5504058 | 5503971 | ID=MS.gene28841.t1.exon4;Parent=MS.gene28841.t1 |
| chr7.4 | CDS | 5503971 | 5504058 | 5503971 | ID=cds.MS.gene28841.t1;Parent=MS.gene28841.t1 |
| chr7.4 | exon | 5504477 | 5504544 | 5504477 | ID=MS.gene28841.t1.exon5;Parent=MS.gene28841.t1 |
| chr7.4 | CDS | 5504477 | 5504544 | 5504477 | ID=cds.MS.gene28841.t1;Parent=MS.gene28841.t1 |
| chr7.4 | exon | 5504961 | 5505030 | 5504961 | ID=MS.gene28841.t1.exon6;Parent=MS.gene28841.t1 |
| chr7.4 | CDS | 5504961 | 5505030 | 5504961 | ID=cds.MS.gene28841.t1;Parent=MS.gene28841.t1 |
| chr7.4 | exon | 5505241 | 5505276 | 5505241 | ID=MS.gene28841.t1.exon7;Parent=MS.gene28841.t1 |
| chr7.4 | CDS | 5505241 | 5505276 | 5505241 | ID=cds.MS.gene28841.t1;Parent=MS.gene28841.t1 |
| chr7.4 | exon | 5505373 | 5505434 | 5505373 | ID=MS.gene28841.t1.exon8;Parent=MS.gene28841.t1 |
| chr7.4 | CDS | 5505373 | 5505434 | 5505373 | ID=cds.MS.gene28841.t1;Parent=MS.gene28841.t1 |
| Gene Sequence |
| Protein sequence |
