Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29526.t1 | AFK47406.1 | 99 | 202 | 2 | 0 | 1 | 202 | 1 | 202 | 1.10E-95 | 359.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29526.t1 | Q8W487 | 57.7 | 142 | 54 | 3 | 63 | 202 | 60 | 197 | 1.8e-25 | 117.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29526.t1 | G7K1Y7 | 99.0 | 202 | 2 | 0 | 1 | 202 | 1 | 202 | 8.0e-96 | 359.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29526 | MS.gene89319 | PPI |
| MS.gene000604 | MS.gene29526 | PPI |
| MS.gene053230 | MS.gene29526 | PPI |
| MS.gene055201 | MS.gene29526 | PPI |
| MS.gene46104 | MS.gene29526 | PPI |
| MS.gene46105 | MS.gene29526 | PPI |
| MS.gene040272 | MS.gene29526 | PPI |
| MS.gene034255 | MS.gene29526 | PPI |
| MS.gene040271 | MS.gene29526 | PPI |
| MS.gene67544 | MS.gene29526 | PPI |
| MS.gene040269 | MS.gene29526 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29526.t1 | MTR_5g080880 | 99.010 | 202 | 2 | 0 | 1 | 202 | 1 | 202 | 3.46e-147 | 412 |
| MS.gene29526.t1 | MTR_5g080870 | 66.995 | 203 | 41 | 5 | 1 | 202 | 1 | 178 | 1.63e-84 | 253 |
| MS.gene29526.t1 | MTR_7g063520 | 41.414 | 198 | 97 | 5 | 8 | 202 | 20 | 201 | 2.68e-41 | 140 |
| MS.gene29526.t1 | MTR_4g006560 | 41.121 | 107 | 56 | 3 | 97 | 202 | 83 | 183 | 4.15e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29526.t1 | AT3G55605 | 45.872 | 218 | 89 | 8 | 1 | 202 | 1 | 205 | 1.74e-39 | 136 |
| MS.gene29526.t1 | AT5G05990 | 39.623 | 212 | 106 | 5 | 5 | 202 | 3 | 206 | 3.85e-37 | 130 |
| MS.gene29526.t1 | AT2G39795 | 50.345 | 145 | 66 | 3 | 60 | 202 | 57 | 197 | 1.70e-36 | 128 |
| MS.gene29526.t1 | AT5G02050 | 37.727 | 220 | 113 | 5 | 1 | 202 | 1 | 214 | 1.38e-28 | 108 |
| MS.gene29526.t1 | AT2G39790 | 33.333 | 210 | 110 | 5 | 1 | 202 | 1 | 188 | 7.26e-20 | 84.3 |
Find 47 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTATCAACTATCTTAAA+TGG | 0.175868 | 5.2:-68687817 | None:intergenic |
| CACATGCCTGATTTGGTTAC+TGG | 0.250062 | 5.2:+68687901 | MS.gene29526:CDS |
| AGTGTTATTGTCTGATTTCC+TGG | 0.252098 | 5.2:-68687838 | None:intergenic |
| ATCAGACAATAACACTTAAA+AGG | 0.289378 | 5.2:+68687845 | MS.gene29526:CDS |
| TAAGAAGGATGGGCCCTCTT+TGG | 0.320568 | 5.2:+68688011 | MS.gene29526:CDS |
| TTATCAAGGTGAAGAAATTC+AGG | 0.325526 | 5.2:+68687870 | MS.gene29526:CDS |
| CTGTCGATAACAATCTCATC+TGG | 0.355760 | 5.2:-68688054 | None:intergenic |
| TGAGGTTCACATGCCTGATT+TGG | 0.368998 | 5.2:+68687894 | MS.gene29526:CDS |
| CCAAGTCAAGCACTTTCGTT+AGG | 0.373305 | 5.2:+68685298 | MS.gene29526:CDS |
| AGAAGTACATACTGAAAATC+TGG | 0.385204 | 5.2:-68688129 | None:intergenic |
| GCTCAGGAAACCGATGATTT+CGG | 0.391310 | 5.2:+68685507 | MS.gene29526:CDS |
| CGCCGCCGTCAATCGATACC+AGG | 0.411836 | 5.2:+68685383 | MS.gene29526:CDS |
| TTCAGTCAGTGTTTCTAAGA+AGG | 0.415683 | 5.2:+68687996 | MS.gene29526:CDS |
| TGAAAATCTGGCCCGTCATA+AGG | 0.439441 | 5.2:-68688117 | None:intergenic |
| TCTTCTCCGTTTCATCGAAT+CGG | 0.447658 | 5.2:+68685473 | MS.gene29526:CDS |
| GATTATCAACTATCTTAAAT+GGG | 0.456111 | 5.2:-68687816 | None:intergenic |
| TCTTCACCAGTAACCAAATC+AGG | 0.463223 | 5.2:-68687907 | None:intergenic |
| TTAGAAACACTGACTGAAAG+TGG | 0.463235 | 5.2:-68687991 | None:intergenic |
| GTCAGTGTTTCTAAGAAGGA+TGG | 0.492712 | 5.2:+68688000 | MS.gene29526:CDS |
| GAGAAGAATATCGTCGGAGG+TGG | 0.494464 | 5.2:-68685457 | None:intergenic |
| ATCGGAAATCACTTGTGCTC+AGG | 0.496436 | 5.2:+68685491 | MS.gene29526:CDS |
| TTTAAGATAGTTGATAATCC+AGG | 0.504200 | 5.2:+68687820 | MS.gene29526:CDS |
| CGATCATCAAGATGATGATA+AGG | 0.505904 | 5.2:+68687933 | MS.gene29526:CDS |
| AGGTGAAGAAATTCAGGTTG+AGG | 0.510992 | 5.2:+68687876 | MS.gene29526:CDS |
| CAAGTCAAGCACTTTCGTTA+GGG | 0.512325 | 5.2:+68685299 | MS.gene29526:CDS |
| ATCTTAAATGGGAAATTGCT+CGG | 0.515748 | 5.2:-68687805 | None:intergenic |
| GAAAGCACGGCGCGATGACC+CGG | 0.517251 | 5.2:-68685360 | None:intergenic |
| TGATTTCCGATTCGATGAAA+CGG | 0.520694 | 5.2:-68685479 | None:intergenic |
| ACTTACAGCGCCGAAATCAT+CGG | 0.522056 | 5.2:-68685517 | None:intergenic |
| ACACTTAAAAGGACTTATCA+AGG | 0.527097 | 5.2:+68687856 | MS.gene29526:CDS |
| ATGAACAGATTCCTTATGAC+GGG | 0.541918 | 5.2:+68688106 | MS.gene29526:CDS |
| ATTGACGGCGGCGGAAAGCA+CGG | 0.549833 | 5.2:-68685373 | None:intergenic |
| TGAACCCTGGTATCGATTGA+CGG | 0.565956 | 5.2:-68685388 | None:intergenic |
| AGAAGAATATCGTCGGAGGT+GGG | 0.577026 | 5.2:-68685456 | None:intergenic |
| TGTCGATAACAATCTCATCT+GGG | 0.591480 | 5.2:-68688053 | None:intergenic |
| CCTAACGAAAGTGCTTGACT+TGG | 0.591991 | 5.2:-68685298 | None:intergenic |
| CTGGTATCGATTGACGGCGG+CGG | 0.595525 | 5.2:-68685382 | None:intergenic |
| TCAGTGTTTCTAAGAAGGAT+GGG | 0.595788 | 5.2:+68688001 | MS.gene29526:CDS |
| ACACAACTGAACTCCAAAGA+GGG | 0.618264 | 5.2:-68688024 | None:intergenic |
| GATGAACAGATTCCTTATGA+CGG | 0.641036 | 5.2:+68688105 | MS.gene29526:CDS |
| AACACAACTGAACTCCAAAG+AGG | 0.648826 | 5.2:-68688025 | None:intergenic |
| GCCGCCGTCAATCGATACCA+GGG | 0.649914 | 5.2:+68685384 | MS.gene29526:CDS |
| ACAGAAGAAAAGTGAAACGT+AGG | 0.650656 | 5.2:-68685417 | None:intergenic |
| GAAACGGAGAAGAATATCGT+CGG | 0.655705 | 5.2:-68685463 | None:intergenic |
| ACGTAGGAACAAATGAACCC+TGG | 0.662093 | 5.2:-68685401 | None:intergenic |
| ACGGAGAAGAATATCGTCGG+AGG | 0.701354 | 5.2:-68685460 | None:intergenic |
| ACCCTGGTATCGATTGACGG+CGG | 0.780259 | 5.2:-68685385 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAACAAAAAATTGAAA+AGG | - | chr5.2:68687678-68687697 | None:intergenic | 10.0% |
| !!! | TAAAATTTAATTTTTCTGTT+TGG | - | chr5.2:68686193-68686212 | None:intergenic | 10.0% |
| !!! | TTTTTTACTCTATTAATTAA+TGG | + | chr5.2:68687021-68687040 | MS.gene29526:intron | 10.0% |
| !! | AAATGTTGAAAATTTGAATT+TGG | + | chr5.2:68687706-68687725 | MS.gene29526:intron | 15.0% |
| !! | GTTAAGGTTAAAAAAAATTA+TGG | - | chr5.2:68686371-68686390 | None:intergenic | 15.0% |
| !! | TAAATATGATTATCTTAGTT+TGG | + | chr5.2:68686590-68686609 | MS.gene29526:intron | 15.0% |
| !! | TTATTTATGAAGAAAGAATT+TGG | + | chr5.2:68686448-68686467 | MS.gene29526:intron | 15.0% |
| !!! | AAATGTTGAAAAAATGATTT+TGG | + | chr5.2:68687761-68687780 | MS.gene29526:intron | 15.0% |
| !!! | ATTTTCCAAGATAATTTTTT+TGG | - | chr5.2:68686979-68686998 | None:intergenic | 15.0% |
| !! | AGTAAAAATAAGTTATAAGC+TGG | - | chr5.2:68685673-68685692 | None:intergenic | 20.0% |
| !! | ATTATAATAAAAGACCTGTT+TGG | + | chr5.2:68685848-68685867 | MS.gene29526:intron | 20.0% |
| !! | CTTATTGAATTTGTAATGTT+TGG | - | chr5.2:68686077-68686096 | None:intergenic | 20.0% |
| !! | GATTATCAACTATCTTAAAT+GGG | - | chr5.2:68687819-68687838 | None:intergenic | 20.0% |
| !! | TAAATATGAATGACATACAA+AGG | - | chr5.2:68686226-68686245 | None:intergenic | 20.0% |
| !!! | AAAAAAATTATGGCTTTGTT+TGG | - | chr5.2:68686361-68686380 | None:intergenic | 20.0% |
| !!! | AAAATGATTTTGGTTGATAT+AGG | + | chr5.2:68687771-68687790 | MS.gene29526:intron | 20.0% |
| !!! | AAATGATTTTGGTTGATATA+GGG | + | chr5.2:68687772-68687791 | MS.gene29526:intron | 20.0% |
| !!! | CAAGATTTTTAAAATAGACA+AGG | - | chr5.2:68686825-68686844 | None:intergenic | 20.0% |
| !!! | GTGATTGAATTTTTAGTTTA+TGG | - | chr5.2:68686274-68686293 | None:intergenic | 20.0% |
| !!! | TTCAATTGTCTAATTTTTTC+CGG | + | chr5.2:68686732-68686751 | MS.gene29526:intron | 20.0% |
| ! | AAAATTAACAGTTACCAAAC+AGG | - | chr5.2:68685865-68685884 | None:intergenic | 25.0% |
| ! | AAGAAGATAGGATATTTAAC+AGG | + | chr5.2:68687481-68687500 | MS.gene29526:intron | 25.0% |
| ! | AAGAGCCAAAAAAATTATCT+TGG | + | chr5.2:68686971-68686990 | MS.gene29526:intron | 25.0% |
| ! | AATCCTTAAAATTAGTCAAG+TGG | + | chr5.2:68686996-68687015 | MS.gene29526:intron | 25.0% |
| ! | ACAAAAGACTACAAAACAAA+AGG | - | chr5.2:68687579-68687598 | None:intergenic | 25.0% |
| ! | AGAAAATTTAGTGAGAAACT+GGG | + | chr5.2:68686853-68686872 | MS.gene29526:intron | 25.0% |
| ! | ATCAGACAATAACACTTAAA+AGG | + | chr5.2:68687845-68687864 | MS.gene29526:CDS | 25.0% |
| ! | ATCATGAGTCTAATGAATTA+AGG | - | chr5.2:68685551-68685570 | None:intergenic | 25.0% |
| ! | ATCCTTAAAATTAGTCAAGT+GGG | + | chr5.2:68686997-68687016 | MS.gene29526:intron | 25.0% |
| ! | CAACAAGATAATCATTGTTA+AGG | - | chr5.2:68686387-68686406 | None:intergenic | 25.0% |
| ! | CATTGATATCAAGTTTCTAT+TGG | + | chr5.2:68687356-68687375 | MS.gene29526:intron | 25.0% |
| ! | GAAACTTGATATCAATGATA+AGG | - | chr5.2:68687353-68687372 | None:intergenic | 25.0% |
| ! | GGATTATCAACTATCTTAAA+TGG | - | chr5.2:68687820-68687839 | None:intergenic | 25.0% |
| ! | GTAATGTTTGGTAAAATTAG+CGG | - | chr5.2:68686065-68686084 | None:intergenic | 25.0% |
| ! | TAGAAAATTTAGTGAGAAAC+TGG | + | chr5.2:68686852-68686871 | MS.gene29526:intron | 25.0% |
| ! | TGATATCAATGATAAGGTAT+AGG | - | chr5.2:68687347-68687366 | None:intergenic | 25.0% |
| ! | TTAAATATCCTATCTTCTTC+CGG | - | chr5.2:68687480-68687499 | None:intergenic | 25.0% |
| ! | TTTATGAAGAAAGAATTTGG+CGG | + | chr5.2:68686451-68686470 | MS.gene29526:intron | 25.0% |
| ! | TTTCTAATGTTTGTGTAGTT+TGG | + | chr5.2:68686890-68686909 | MS.gene29526:intron | 25.0% |
| !! | ATATGATTATCTTAGTTTGG+AGG | + | chr5.2:68686593-68686612 | MS.gene29526:intron | 25.0% |
| !!! | TAAGACATAAATTTGGTTTG+TGG | + | chr5.2:68685798-68685817 | MS.gene29526:intron | 25.0% |
| !!! | TTAAAACTTTTAGCTTACCA+TGG | + | chr5.2:68685737-68685756 | MS.gene29526:intron | 25.0% |
| !!! | TTATTTCTATGAGCTTATAG+CGG | + | chr5.2:68685900-68685919 | MS.gene29526:intron | 25.0% |
| !!! | TTTAAGATAGTTGATAATCC+AGG | + | chr5.2:68687820-68687839 | MS.gene29526:CDS | 25.0% |
| !!! | TTTTTCAATTGAGATTGCAA+GGG | - | chr5.2:68685983-68686002 | None:intergenic | 25.0% |
| !!! | TTTTTTCAATTGAGATTGCA+AGG | - | chr5.2:68685984-68686003 | None:intergenic | 25.0% |
| AAAGATTATCTTTCGTGAGA+GGG | + | chr5.2:68686640-68686659 | MS.gene29526:intron | 30.0% | |
| AATGAGGTGTAGATTAAGTA+GGG | + | chr5.2:68686536-68686555 | MS.gene29526:intron | 30.0% | |
| ACACTTAAAAGGACTTATCA+AGG | + | chr5.2:68687856-68687875 | MS.gene29526:CDS | 30.0% | |
| ATAGCTTATAGCTTATAAGC+TGG | + | chr5.2:68685824-68685843 | MS.gene29526:intron | 30.0% | |
| ATCTGTTCATCAGAAAAATC+AGG | - | chr5.2:68688096-68688115 | None:intergenic | 30.0% | |
| ATCTTAAATGGGAAATTGCT+CGG | - | chr5.2:68687808-68687827 | None:intergenic | 30.0% | |
| ATTGATCAGAAAAACTCAAC+CGG | + | chr5.2:68685341-68685360 | MS.gene29526:CDS | 30.0% | |
| ATTTAACAGGTTGTACAATC+TGG | + | chr5.2:68687494-68687513 | MS.gene29526:intron | 30.0% | |
| CACGAAAGATAATCTTTAGT+TGG | - | chr5.2:68686637-68686656 | None:intergenic | 30.0% | |
| GAAAATGATTGTTACGAAAC+AGG | - | chr5.2:68685647-68685666 | None:intergenic | 30.0% | |
| GTATTAATATGCTCAGAATC+AGG | - | chr5.2:68687649-68687668 | None:intergenic | 30.0% | |
| TAAAGATTATCTTTCGTGAG+AGG | + | chr5.2:68686639-68686658 | MS.gene29526:intron | 30.0% | |
| TAATGAGGTGTAGATTAAGT+AGG | + | chr5.2:68686535-68686554 | MS.gene29526:intron | 30.0% | |
| TGATAAGGTATAGGAACAAA+AGG | - | chr5.2:68687338-68687357 | None:intergenic | 30.0% | |
| TGATATCAAGTTTCTATTGG+TGG | + | chr5.2:68687359-68687378 | MS.gene29526:intron | 30.0% | |
| TTATCAAGGTGAAGAAATTC+AGG | + | chr5.2:68687870-68687889 | MS.gene29526:CDS | 30.0% | |
| TTATGAAGAAAGAATTTGGC+GGG | + | chr5.2:68686452-68686471 | MS.gene29526:intron | 30.0% | |
| TTCTCAAAAAGGATTCGAAT+GGG | + | chr5.2:68686936-68686955 | MS.gene29526:intron | 30.0% | |
| TTTCTCAAAAAGGATTCGAA+TGG | + | chr5.2:68686935-68686954 | MS.gene29526:intron | 30.0% | |
| TTTGTGTAGTTTGGAAACTT+AGG | + | chr5.2:68686899-68686918 | MS.gene29526:intron | 30.0% | |
| ! | AACCCACTTGACTAATTTTA+AGG | - | chr5.2:68687002-68687021 | None:intergenic | 30.0% |
| ! | CAATTTTACCCTGTAATCTT+AGG | + | chr5.2:68685765-68685784 | MS.gene29526:intron | 30.0% |
| ! | TAACTGATAAACTAGCTTAG+AGG | - | chr5.2:68686323-68686342 | None:intergenic | 30.0% |
| ! | TTAACTTTCTGTTTGAGGTT+GGG | + | chr5.2:68687076-68687095 | MS.gene29526:intron | 30.0% |
| ! | TTTTACCTCGAGAGTTTTTT+CGG | + | chr5.2:68687445-68687464 | MS.gene29526:intron | 30.0% |
| ! | TTTTCAATTGAGATTGCAAG+GGG | - | chr5.2:68685982-68686001 | None:intergenic | 30.0% |
| !! | AATTTTCAGGGTTTTGTGTT+AGG | + | chr5.2:68686672-68686691 | MS.gene29526:intron | 30.0% |
| !! | TGGTTGGTAAGACATAAATT+TGG | + | chr5.2:68685791-68685810 | MS.gene29526:intron | 30.0% |
| !!! | AATTGTCTAATTTTTTCCGG+TGG | + | chr5.2:68686735-68686754 | MS.gene29526:intron | 30.0% |
| !!! | GGTGTGATTTTTTCTCAAAA+AGG | + | chr5.2:68686925-68686944 | MS.gene29526:intron | 30.0% |
| AAAAGGATTCGAATGGGAAA+AGG | + | chr5.2:68686942-68686961 | MS.gene29526:intron | 35.0% | |
| AAGATTATCTTTCGTGAGAG+GGG | + | chr5.2:68686641-68686660 | MS.gene29526:intron | 35.0% | |
| AAGTTAACTCTCAACAGAAC+AGG | - | chr5.2:68687063-68687082 | None:intergenic | 35.0% | |
| AATCTACACCTCATTACCAT+CGG | - | chr5.2:68686531-68686550 | None:intergenic | 35.0% | |
| ACAGAAGAAAAGTGAAACGT+AGG | - | chr5.2:68685420-68685439 | None:intergenic | 35.0% | |
| AGAAACTGGGTGTGATTATT+TGG | + | chr5.2:68686866-68686885 | MS.gene29526:intron | 35.0% | |
| ATGAACAGATTCCTTATGAC+GGG | + | chr5.2:68688106-68688125 | MS.gene29526:CDS | 35.0% | |
| CGATCATCAAGATGATGATA+AGG | + | chr5.2:68687933-68687952 | MS.gene29526:CDS | 35.0% | |
| GAGAGTTAACTTTCTGTTTG+AGG | + | chr5.2:68687071-68687090 | MS.gene29526:intron | 35.0% | |
| GATGAACAGATTCCTTATGA+CGG | + | chr5.2:68688105-68688124 | MS.gene29526:CDS | 35.0% | |
| GTAGTTTGGAAACTTAGGAA+CGG | + | chr5.2:68686904-68686923 | MS.gene29526:intron | 35.0% | |
| TGTCGATAACAATCTCATCT+GGG | - | chr5.2:68688056-68688075 | None:intergenic | 35.0% | |
| TTCGAAATCTCCAAATTGGA+AGG | - | chr5.2:68686800-68686819 | None:intergenic | 35.0% | |
| TTCTGTTTGGTAAAACACAG+CGG | - | chr5.2:68686180-68686199 | None:intergenic | 35.0% | |
| TTGATCAGAAAAACTCAACC+GGG | + | chr5.2:68685342-68685361 | MS.gene29526:CDS | 35.0% | |
| ! | AGTGTTATTGTCTGATTTCC+TGG | - | chr5.2:68687841-68687860 | None:intergenic | 35.0% |
| ! | AGTTCTATGTACTTGTTGAG+GGG | + | chr5.2:68687107-68687126 | MS.gene29526:intron | 35.0% |
| ! | AGTTGAGTTCATCTAGTTTC+AGG | + | chr5.2:68687272-68687291 | MS.gene29526:intron | 35.0% |
| ! | CAGTTCTATGTACTTGTTGA+GGG | + | chr5.2:68687106-68687125 | MS.gene29526:intron | 35.0% |
| ! | GTTAACTTTCTGTTTGAGGT+TGG | + | chr5.2:68687075-68687094 | MS.gene29526:intron | 35.0% |
| ! | GTTGAGTTCATCTAGTTTCA+GGG | + | chr5.2:68687273-68687292 | MS.gene29526:intron | 35.0% |
| ! | TAACTTTCTGTTTGAGGTTG+GGG | + | chr5.2:68687077-68687096 | MS.gene29526:intron | 35.0% |
| ! | TCAGCTATAAGCTAGCTTAT+AGG | + | chr5.2:68686112-68686131 | MS.gene29526:intron | 35.0% |
| ! | TCAGTGTTTCTAAGAAGGAT+GGG | + | chr5.2:68688001-68688020 | MS.gene29526:CDS | 35.0% |
| ! | TCAGTTCTATGTACTTGTTG+AGG | + | chr5.2:68687105-68687124 | MS.gene29526:intron | 35.0% |
| ! | TGATTTCCGATTCGATGAAA+CGG | - | chr5.2:68685482-68685501 | None:intergenic | 35.0% |
| ! | TTAGAAACACTGACTGAAAG+TGG | - | chr5.2:68687994-68688013 | None:intergenic | 35.0% |
| ! | TTCAGTCAGTGTTTCTAAGA+AGG | + | chr5.2:68687996-68688015 | MS.gene29526:CDS | 35.0% |
| !! | AGTGAGACTTTGAAATGTCT+TGG | + | chr5.2:68686763-68686782 | MS.gene29526:intron | 35.0% |
| !! | GTGAGACTTTGAAATGTCTT+GGG | + | chr5.2:68686764-68686783 | MS.gene29526:intron | 35.0% |
| !! | TGAGACTTTGAAATGTCTTG+GGG | + | chr5.2:68686765-68686784 | MS.gene29526:intron | 35.0% |
| !!! | AGGGGTTGGTTTTAATTTTC+AGG | + | chr5.2:68686659-68686678 | MS.gene29526:intron | 35.0% |
| !!! | ATTTTGGTTGATATAGGGTG+AGG | + | chr5.2:68687777-68687796 | MS.gene29526:intron | 35.0% |
| !!! | GGGGTTGGTTTTAATTTTCA+GGG | + | chr5.2:68686660-68686679 | MS.gene29526:intron | 35.0% |
| !!! | TCTAATTTTTTCCGGTGGTT+TGG | + | chr5.2:68686740-68686759 | MS.gene29526:intron | 35.0% |
| !!! | TTTACCTCGAGAGTTTTTTC+GGG | + | chr5.2:68687446-68687465 | MS.gene29526:intron | 35.0% |
| AACACAACTGAACTCCAAAG+AGG | - | chr5.2:68688028-68688047 | None:intergenic | 40.0% | |
| AACCAGAGCCTAAGATTACA+GGG | - | chr5.2:68685776-68685795 | None:intergenic | 40.0% | |
| AAGTAGGGCTGTGGATTTAT+GGG | + | chr5.2:68686551-68686570 | MS.gene29526:intron | 40.0% | |
| ACACAACTGAACTCCAAAGA+GGG | - | chr5.2:68688027-68688046 | None:intergenic | 40.0% | |
| ACAGGTTGTACAATCTGGTT+TGG | + | chr5.2:68687499-68687518 | MS.gene29526:intron | 40.0% | |
| AGGGTAAAATTGAGAGACCA+TGG | - | chr5.2:68685757-68685776 | None:intergenic | 40.0% | |
| CAAGTCAAGCACTTTCGTTA+GGG | + | chr5.2:68685299-68685318 | MS.gene29526:CDS | 40.0% | |
| CTGTCGATAACAATCTCATC+TGG | - | chr5.2:68688057-68688076 | None:intergenic | 40.0% | |
| GAAACGGAGAAGAATATCGT+CGG | - | chr5.2:68685466-68685485 | None:intergenic | 40.0% | |
| GACTCTTTGACAGAGTTACT+CGG | - | chr5.2:68686491-68686510 | None:intergenic | 40.0% | |
| GCTTTCTCTTTCATCTTGTC+TGG | + | chr5.2:68687309-68687328 | MS.gene29526:intron | 40.0% | |
| GGAGTTCGAAATCTCCAAAT+TGG | - | chr5.2:68686804-68686823 | None:intergenic | 40.0% | |
| GTAGAATTCCGGAAGAAGAT+AGG | + | chr5.2:68687469-68687488 | MS.gene29526:intron | 40.0% | |
| TAAGTAGGGCTGTGGATTTA+TGG | + | chr5.2:68686550-68686569 | MS.gene29526:intron | 40.0% | |
| TCTTCACCAGTAACCAAATC+AGG | - | chr5.2:68687910-68687929 | None:intergenic | 40.0% | |
| TCTTCTCCGTTTCATCGAAT+CGG | + | chr5.2:68685473-68685492 | MS.gene29526:CDS | 40.0% | |
| ! | AGCTAGCTTATAGCTGATAG+CGG | - | chr5.2:68686109-68686128 | None:intergenic | 40.0% |
| ! | CAGGTTGTACAATCTGGTTT+GGG | + | chr5.2:68687500-68687519 | MS.gene29526:intron | 40.0% |
| ! | GCAAACTTTTGCTGCAAGTT+TGG | + | chr5.2:68687390-68687409 | MS.gene29526:intron | 40.0% |
| ! | GTCAGTGTTTCTAAGAAGGA+TGG | + | chr5.2:68688000-68688019 | MS.gene29526:CDS | 40.0% |
| ! | GTTCTATGTACTTGTTGAGG+GGG | + | chr5.2:68687108-68687127 | MS.gene29526:intron | 40.0% |
| ! | TTCTATGTACTTGTTGAGGG+GGG | + | chr5.2:68687109-68687128 | MS.gene29526:intron | 40.0% |
| !! | AGGTGAAGAAATTCAGGTTG+AGG | + | chr5.2:68687876-68687895 | MS.gene29526:CDS | 40.0% |
| !! | CTCTGTCAAAGAGTCGTTTT+TGG | + | chr5.2:68686496-68686515 | MS.gene29526:intron | 40.0% |
| !! | TTTCAGGGTTTTGTGTTAGG+AGG | + | chr5.2:68686675-68686694 | MS.gene29526:intron | 40.0% |
| !!! | GTTTTTTCGGGGTAGAATTC+CGG | + | chr5.2:68687458-68687477 | MS.gene29526:intron | 40.0% |
| !!! | TGCACTCTGGAGTTTTTCAA+GGG | + | chr5.2:68687147-68687166 | MS.gene29526:intron | 40.0% |
| !!! | TTACCTCGAGAGTTTTTTCG+GGG | + | chr5.2:68687447-68687466 | MS.gene29526:intron | 40.0% |
| !!! | TTGCACTCTGGAGTTTTTCA+AGG | + | chr5.2:68687146-68687165 | MS.gene29526:intron | 40.0% |
| AAAGAATTTGGCGGGAGATG+GGG | + | chr5.2:68686460-68686479 | MS.gene29526:intron | 45.0% | |
| AAAGTCTCACTCCAAACCAC+CGG | - | chr5.2:68686754-68686773 | None:intergenic | 45.0% | |
| ACGTAGGAACAAATGAACCC+TGG | - | chr5.2:68685404-68685423 | None:intergenic | 45.0% | |
| ACTCTCAACAGAACAGGTCA+AGG | - | chr5.2:68687057-68687076 | None:intergenic | 45.0% | |
| AGAAAGAATTTGGCGGGAGA+TGG | + | chr5.2:68686458-68686477 | MS.gene29526:intron | 45.0% | |
| AGAAGAATATCGTCGGAGGT+GGG | - | chr5.2:68685459-68685478 | None:intergenic | 45.0% | |
| ATCGGAAATCACTTGTGCTC+AGG | + | chr5.2:68685491-68685510 | MS.gene29526:CDS | 45.0% | |
| CAACCAGAGCCTAAGATTAC+AGG | - | chr5.2:68685777-68685796 | None:intergenic | 45.0% | |
| CCAAGTCAAGCACTTTCGTT+AGG | + | chr5.2:68685298-68685317 | MS.gene29526:CDS | 45.0% | |
| CTCTCAACAGAACAGGTCAA+GGG | - | chr5.2:68687056-68687075 | None:intergenic | 45.0% | |
| GAAAGAATTTGGCGGGAGAT+GGG | + | chr5.2:68686459-68686478 | MS.gene29526:intron | 45.0% | |
| GCTCAGGAAACCGATGATTT+CGG | + | chr5.2:68685507-68685526 | MS.gene29526:CDS | 45.0% | |
| GTGTAGATTAAGTAGGGCTG+TGG | + | chr5.2:68686542-68686561 | MS.gene29526:intron | 45.0% | |
| GTTAGGAGGATGTGGTACTT+TGG | + | chr5.2:68686689-68686708 | MS.gene29526:intron | 45.0% | |
| GTTTCAGGGTTACTTCGTCA+AGG | + | chr5.2:68687287-68687306 | MS.gene29526:intron | 45.0% | |
| GTTTCGTTCGCCTTCCAATT+TGG | + | chr5.2:68686787-68686806 | MS.gene29526:intron | 45.0% | |
| TACCCTGTAATCTTAGGCTC+TGG | + | chr5.2:68685771-68685790 | MS.gene29526:intron | 45.0% | |
| TATGCTCAGAATCAGGCACA+AGG | - | chr5.2:68687642-68687661 | None:intergenic | 45.0% | |
| TGAAAATCTGGCCCGTCATA+AGG | - | chr5.2:68688120-68688139 | None:intergenic | 45.0% | |
| TGAGGTTCACATGCCTGATT+TGG | + | chr5.2:68687894-68687913 | MS.gene29526:CDS | 45.0% | |
| TTATCTTTCGTGAGAGGGGT+TGG | + | chr5.2:68686645-68686664 | MS.gene29526:intron | 45.0% | |
| ! | ACTTACAGCGCCGAAATCAT+CGG | - | chr5.2:68685520-68685539 | None:intergenic | 45.0% |
| ! | CAGCTAGTTAGTCTCAGGTT+TGG | + | chr5.2:68687419-68687438 | MS.gene29526:intron | 45.0% |
| ! | CTGTAATCTTAGGCTCTGGT+TGG | + | chr5.2:68685775-68685794 | MS.gene29526:intron | 45.0% |
| ! | TGTAGCAGCTAGTTAGTCTC+AGG | + | chr5.2:68687414-68687433 | MS.gene29526:intron | 45.0% |
| !! | CACATGCCTGATTTGGTTAC+TGG | + | chr5.2:68687901-68687920 | MS.gene29526:CDS | 45.0% |
| !! | CCTAACGAAAGTGCTTGACT+TGG | - | chr5.2:68685301-68685320 | None:intergenic | 45.0% |
| !! | GGTTTTGTGTTAGGAGGATG+TGG | + | chr5.2:68686681-68686700 | MS.gene29526:intron | 45.0% |
| !! | GTTGTACAATCTGGTTTGGG+TGG | + | chr5.2:68687503-68687522 | MS.gene29526:intron | 45.0% |
| !! | GTTTTGAGCTTGGCATGGTT+AGG | + | chr5.2:68687533-68687552 | MS.gene29526:intron | 45.0% |
| !! | TCAAGTTTCTATTGGTGGCG+TGG | + | chr5.2:68687364-68687383 | MS.gene29526:intron | 45.0% |
| !! | TGAACCCTGGTATCGATTGA+CGG | - | chr5.2:68685391-68685410 | None:intergenic | 45.0% |
| !!! | AGTTTTTCAAGGGGTGCTTG+TGG | + | chr5.2:68687157-68687176 | MS.gene29526:intron | 45.0% |
| !!! | GCACTCTGGAGTTTTTCAAG+GGG | + | chr5.2:68687148-68687167 | MS.gene29526:intron | 45.0% |
| !!! | TGACAGTTTTGAGCTTGGCA+TGG | + | chr5.2:68687528-68687547 | MS.gene29526:intron | 45.0% |
| !!! | TGGTGTGACAGTTTTGAGCT+TGG | + | chr5.2:68687523-68687542 | MS.gene29526:intron | 45.0% |
| !!! | TTTTTGGTCTTGAGCACCGA+TGG | + | chr5.2:68686512-68686531 | MS.gene29526:intron | 45.0% |
| AAGAATTTGGCGGGAGATGG+GGG | + | chr5.2:68686461-68686480 | MS.gene29526:intron | 50.0% | |
| ACGGAGAAGAATATCGTCGG+AGG | - | chr5.2:68685463-68685482 | None:intergenic | 50.0% | |
| CTACCCCGAAAAAACTCTCG+AGG | - | chr5.2:68687453-68687472 | None:intergenic | 50.0% | |
| GAGAAGAATATCGTCGGAGG+TGG | - | chr5.2:68685460-68685479 | None:intergenic | 50.0% | |
| TAAGAAGGATGGGCCCTCTT+TGG | + | chr5.2:68688011-68688030 | MS.gene29526:CDS | 50.0% | |
| TTTCTCCTGCTGCAGTAGTG+AGG | + | chr5.2:68687226-68687245 | MS.gene29526:intron | 50.0% | |
| ! | TATGTACTTGTTGAGGGGGG+TGG | + | chr5.2:68687112-68687131 | MS.gene29526:intron | 50.0% |
| !! | CTTGAGCACCGATGGTAATG+AGG | + | chr5.2:68686520-68686539 | MS.gene29526:intron | 50.0% |
| !! | GTGTTGCTTCAGTTGCACTC+TGG | + | chr5.2:68687134-68687153 | MS.gene29526:intron | 50.0% |
| GAGGTCTGAGTCTGACTGCT+TGG | + | chr5.2:68687245-68687264 | MS.gene29526:intron | 55.0% | |
| TCAGACCTCACTACTGCAGC+AGG | - | chr5.2:68687234-68687253 | None:intergenic | 55.0% | |
| !! | ACCCTGGTATCGATTGACGG+CGG | - | chr5.2:68685388-68685407 | None:intergenic | 55.0% |
| !! | GTTTCTATTGGTGGCGTGGC+AGG | + | chr5.2:68687368-68687387 | MS.gene29526:intron | 55.0% |
| ATTGACGGCGGCGGAAAGCA+CGG | - | chr5.2:68685376-68685395 | None:intergenic | 60.0% | |
| GCCGCCGTCAATCGATACCA+GGG | + | chr5.2:68685384-68685403 | MS.gene29526:CDS | 60.0% | |
| !! | CTGGTATCGATTGACGGCGG+CGG | - | chr5.2:68685385-68685404 | None:intergenic | 60.0% |
| CGCCGCCGTCAATCGATACC+AGG | + | chr5.2:68685383-68685402 | MS.gene29526:CDS | 65.0% | |
| ! | GAAAGCACGGCGCGATGACC+CGG | - | chr5.2:68685363-68685382 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 68685273 | 68688139 | 68685273 | ID=MS.gene29526 |
| chr5.2 | mRNA | 68685273 | 68688139 | 68685273 | ID=MS.gene29526.t1;Parent=MS.gene29526 |
| chr5.2 | exon | 68685273 | 68685533 | 68685273 | ID=MS.gene29526.t1.exon1;Parent=MS.gene29526.t1 |
| chr5.2 | CDS | 68685273 | 68685533 | 68685273 | ID=cds.MS.gene29526.t1;Parent=MS.gene29526.t1 |
| chr5.2 | exon | 68687793 | 68688139 | 68687793 | ID=MS.gene29526.t1.exon2;Parent=MS.gene29526.t1 |
| chr5.2 | CDS | 68687793 | 68688139 | 68687793 | ID=cds.MS.gene29526.t1;Parent=MS.gene29526.t1 |
| Gene Sequence |
| Protein sequence |
