Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89319.t1 | XP_013448969.1 | 94.9 | 255 | 10 | 2 | 1 | 253 | 1 | 254 | 1.10E-127 | 466.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89319.t1 | Q8W487 | 43.8 | 226 | 121 | 5 | 32 | 253 | 27 | 250 | 1.4e-40 | 167.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89319.t1 | I3SR78 | 94.9 | 255 | 10 | 2 | 1 | 253 | 1 | 254 | 7.6e-128 | 466.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29526 | MS.gene89319 | PPI |
| MS.gene020215 | MS.gene89319 | PPI |
| MS.gene50126 | MS.gene89319 | PPI |
| MS.gene32510 | MS.gene89319 | PPI |
| MS.gene64512 | MS.gene89319 | PPI |
| MS.gene32509 | MS.gene89319 | PPI |
| MS.gene29524 | MS.gene89319 | PPI |
| MS.gene79893 | MS.gene89319 | PPI |
| MS.gene89319 | MS.gene50127 | PPI |
| MS.gene29523 | MS.gene89319 | PPI |
| MS.gene061905 | MS.gene89319 | PPI |
| MS.gene32507 | MS.gene89319 | PPI |
| MS.gene09845 | MS.gene89319 | PPI |
| MS.gene045358 | MS.gene89319 | PPI |
| MS.gene29525 | MS.gene89319 | PPI |
| MS.gene022752 | MS.gene89319 | PPI |
| MS.gene59233 | MS.gene89319 | PPI |
| MS.gene39294 | MS.gene89319 | PPI |
| MS.gene89319 | MS.gene77531 | PPI |
| MS.gene89319 | MS.gene50125 | PPI |
| MS.gene89319 | MS.gene32508 | PPI |
| MS.gene59232 | MS.gene89319 | PPI |
| MS.gene89319 | MS.gene75670 | PPI |
| MS.gene018553 | MS.gene89319 | PPI |
| MS.gene29527 | MS.gene89319 | PPI |
| MS.gene45646 | MS.gene89319 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89319.t1 | MTR_7g063520 | 94.902 | 255 | 10 | 2 | 1 | 253 | 1 | 254 | 3.57e-170 | 469 |
| MS.gene89319.t1 | MTR_5g080880 | 47.012 | 251 | 111 | 5 | 20 | 252 | 8 | 254 | 2.60e-67 | 211 |
| MS.gene89319.t1 | MTR_5g080870 | 38.565 | 223 | 117 | 6 | 31 | 252 | 16 | 219 | 1.86e-39 | 139 |
| MS.gene89319.t1 | MTR_4g006560 | 37.736 | 159 | 91 | 3 | 98 | 253 | 83 | 236 | 2.89e-28 | 108 |
| MS.gene89319.t1 | MTR_1g013120 | 30.736 | 231 | 142 | 9 | 28 | 253 | 16 | 233 | 1.27e-19 | 85.1 |
| MS.gene89319.t1 | MTR_7g091050 | 46.667 | 60 | 32 | 0 | 194 | 253 | 106 | 165 | 1.43e-12 | 64.7 |
| MS.gene89319.t1 | MTR_7g091050 | 46.667 | 60 | 32 | 0 | 194 | 253 | 141 | 200 | 1.74e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89319.t1 | AT5G02050 | 47.970 | 271 | 119 | 6 | 1 | 253 | 1 | 267 | 9.32e-70 | 216 |
| MS.gene89319.t1 | AT3G55605 | 44.528 | 265 | 128 | 8 | 1 | 253 | 1 | 258 | 1.09e-61 | 194 |
| MS.gene89319.t1 | AT2G39795 | 42.023 | 257 | 138 | 7 | 1 | 253 | 1 | 250 | 4.58e-59 | 187 |
| MS.gene89319.t1 | AT5G05990 | 38.132 | 257 | 135 | 7 | 18 | 252 | 4 | 258 | 1.06e-46 | 156 |
| MS.gene89319.t1 | AT2G39790 | 33.597 | 253 | 153 | 8 | 1 | 252 | 1 | 239 | 4.19e-34 | 123 |
| MS.gene89319.t1 | AT1G15870 | 30.180 | 222 | 139 | 8 | 39 | 253 | 29 | 241 | 2.05e-27 | 105 |
| MS.gene89319.t1 | AT1G80720 | 30.808 | 198 | 126 | 5 | 58 | 253 | 53 | 241 | 1.59e-22 | 93.2 |
| MS.gene89319.t1 | AT1G80720 | 30.808 | 198 | 126 | 5 | 58 | 253 | 1 | 189 | 2.88e-22 | 91.3 |
| MS.gene89319.t1 | AT4G31930 | 31.535 | 241 | 142 | 9 | 19 | 253 | 11 | 234 | 1.05e-19 | 85.5 |
| MS.gene89319.t1 | AT4G32605 | 31.915 | 94 | 60 | 1 | 164 | 253 | 126 | 219 | 6.81e-11 | 60.8 |
Find 71 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTCATCCGGATTCTTTA+TGG | 0.182617 | 7.1:+38158578 | None:intergenic |
| ATGGAGTGTGTATGGAGTTT+GGG | 0.281286 | 7.1:-38158641 | MS.gene89319:CDS |
| CTCTGTTGAGGTGCCACGTT+AGG | 0.340860 | 7.1:+38158744 | None:intergenic |
| AATGGAGTGTGTATGGAGTT+TGG | 0.345306 | 7.1:-38158642 | MS.gene89319:CDS |
| CTATCAATCACAACCTCATC+AGG | 0.345649 | 7.1:+38158606 | None:intergenic |
| CTATCATTCTCATTCTTCTC+GGG | 0.360091 | 7.1:+38158705 | None:intergenic |
| CAAAGACAACAAGGAATACT+TGG | 0.378496 | 7.1:-38158336 | MS.gene89319:CDS |
| GCTATCATTCTCATTCTTCT+CGG | 0.381925 | 7.1:+38158704 | None:intergenic |
| GATTGCGCTGTGGAAGGTTC+TGG | 0.386945 | 7.1:+38161054 | None:intergenic |
| CAAAGGAAATGGAGTGTGTA+TGG | 0.388939 | 7.1:-38158649 | MS.gene89319:CDS |
| AGTTGAATAGTTCTTTCTCC+AGG | 0.396432 | 7.1:+38158813 | None:intergenic |
| TGAAGACCAGCTGGTATATG+AGG | 0.426221 | 7.1:-38158556 | MS.gene89319:CDS |
| GAGGAGAGGGAGTGCGGCAG+CGG | 0.429152 | 7.1:+38161102 | None:intergenic |
| GAGAGGGAGTGCGGCAGCGG+TGG | 0.485638 | 7.1:+38161105 | None:intergenic |
| TTGAAAACAGTCACAACTAA+AGG | 0.487624 | 7.1:+38158669 | None:intergenic |
| AGCTGGTCTTCAGATTCATC+CGG | 0.494031 | 7.1:+38158567 | None:intergenic |
| TTTGAGATCGAGGACAACCC+TGG | 0.494413 | 7.1:-38158831 | MS.gene89319:CDS |
| ACTTGAGAAAAGCCTTCTGC+AGG | 0.495315 | 7.1:+38158420 | None:intergenic |
| TAGCTTGTCCATAAAGAATC+CGG | 0.497260 | 7.1:-38158586 | MS.gene89319:CDS |
| TGGAGGAAGTTGCCGCTGCA+CGG | 0.501833 | 7.1:+38161074 | None:intergenic |
| TTGCCGCTGCACGGCGAGAG+AGG | 0.509670 | 7.1:+38161083 | None:intergenic |
| GGGTTGTCCTCGATCTCAAA+AGG | 0.511746 | 7.1:+38158834 | None:intergenic |
| CGAAGGAGAGTATCATCAGC+GGG | 0.511851 | 7.1:+38160950 | None:intergenic |
| TCTGTTGAGGTGCCACGTTA+GGG | 0.512444 | 7.1:+38158745 | None:intergenic |
| AGCGGTGGCGCGACGGAGAG+CGG | 0.514456 | 7.1:+38161120 | None:intergenic |
| GTTGAATAGTTCTTTCTCCA+GGG | 0.519495 | 7.1:+38158814 | None:intergenic |
| GTGCGGCAGCGGTGGCGCGA+CGG | 0.525200 | 7.1:+38161113 | None:intergenic |
| GAGTGGTTTCATTGTGGCGA+AGG | 0.535144 | 7.1:+38161020 | None:intergenic |
| GGTGACTGCTTTCCCTGATG+AGG | 0.538518 | 7.1:-38158619 | MS.gene89319:CDS |
| ACCTCAACAGAGTGAGGATG+AGG | 0.540010 | 7.1:-38158733 | MS.gene89319:CDS |
| CTGCACGGCGAGAGAGGAGA+GGG | 0.542154 | 7.1:+38161089 | None:intergenic |
| ATTGTGGCGAAGGAGGTTAA+CGG | 0.544318 | 7.1:+38161030 | None:intergenic |
| TGAAATCGACTGTGCTCTTG+AGG | 0.545067 | 7.1:-38160915 | MS.gene89319:CDS |
| CCCTCTCGTAGCTTCGCTTA+CGG | 0.550555 | 7.1:-38160989 | MS.gene89319:CDS |
| GCTCTTGAGGATAATAATGA+AGG | 0.555442 | 7.1:-38160902 | MS.gene89319:CDS |
| TTGTGTTGGGTGTTATCCCT+CGG | 0.555715 | 7.1:+38158387 | None:intergenic |
| GCCTCATCCTCACTCTGTTG+AGG | 0.559817 | 7.1:+38158732 | None:intergenic |
| AAAGACAACAAGGAATACTT+GGG | 0.563940 | 7.1:-38158335 | MS.gene89319:CDS |
| TGGTTTCATTGTGGCGAAGG+AGG | 0.565255 | 7.1:+38161023 | None:intergenic |
| GCGAGAGAGGAGAGGGAGTG+CGG | 0.565330 | 7.1:+38161096 | None:intergenic |
| AACGGCGATTGCGCTGTGGA+AGG | 0.565623 | 7.1:+38161048 | None:intergenic |
| GATCTCAAAAGGAAAATCAC+CGG | 0.567645 | 7.1:+38158845 | None:intergenic |
| GGATGAATCTGAAGACCAGC+TGG | 0.570489 | 7.1:-38158565 | MS.gene89319:CDS |
| CAGGTCCCTCATATACCAGC+TGG | 0.571273 | 7.1:+38158550 | None:intergenic |
| TATCATTCTCATTCTTCTCG+GGG | 0.576332 | 7.1:+38158706 | None:intergenic |
| CTCAAGTATCTCGAGATCCG+AGG | 0.584465 | 7.1:-38158404 | MS.gene89319:CDS |
| CAAAATGAGTGGTTTCATTG+TGG | 0.586542 | 7.1:+38161014 | None:intergenic |
| CACAGTCGATTTCACTGTCA+AGG | 0.589925 | 7.1:+38160924 | None:intergenic |
| TTTGGATGAAAACCTGCAGA+AGG | 0.596555 | 7.1:-38158432 | MS.gene89319:CDS |
| TCAAGTATCTCGAGATCCGA+GGG | 0.601222 | 7.1:-38158403 | MS.gene89319:CDS |
| CTAAATGCTTACGTGAACTC+AGG | 0.611960 | 7.1:+38158531 | None:intergenic |
| TCTCCTCTCTCGCCGTGCAG+CGG | 0.617355 | 7.1:-38161086 | MS.gene89319:CDS |
| ATCTCAAAAGGAAAATCACC+GGG | 0.618030 | 7.1:+38158846 | None:intergenic |
| TGGAGTGTGTATGGAGTTTG+GGG | 0.622811 | 7.1:-38158640 | MS.gene89319:CDS |
| TGCGCTGTGGAAGGTTCTGG+AGG | 0.628252 | 7.1:+38161057 | None:intergenic |
| GAAGACCAGCTGGTATATGA+GGG | 0.628639 | 7.1:-38158555 | MS.gene89319:CDS |
| TATCAATCACAACCTCATCA+GGG | 0.630563 | 7.1:+38158607 | None:intergenic |
| GCTGCACGGCGAGAGAGGAG+AGG | 0.631466 | 7.1:+38161088 | None:intergenic |
| TCGAAGGAGAGTATCATCAG+CGG | 0.634573 | 7.1:+38160949 | None:intergenic |
| CGTGGCACCTCAACAGAGTG+AGG | 0.643427 | 7.1:-38158739 | MS.gene89319:CDS |
| CATGTTCAACAAAGACAACA+AGG | 0.647062 | 7.1:-38158345 | MS.gene89319:CDS |
| TTTCACTGTCAAGGACTCGA+AGG | 0.657777 | 7.1:+38160933 | None:intergenic |
| ACAACAAGGAATACTTGGGG+TGG | 0.664017 | 7.1:-38158331 | MS.gene89319:CDS |
| GGTTAACGGCGATTGCGCTG+TGG | 0.671069 | 7.1:+38161044 | None:intergenic |
| ACGAGAGGGTACAAAATGAG+TGG | 0.672739 | 7.1:+38161003 | None:intergenic |
| AAGGAGAGTATCATCAGCGG+GGG | 0.679029 | 7.1:+38160952 | None:intergenic |
| GCCGTAAGCGAAGCTACGAG+AGG | 0.685303 | 7.1:+38160988 | None:intergenic |
| TCAAGTTGACATCCCTAACG+TGG | 0.692064 | 7.1:-38158757 | MS.gene89319:CDS |
| CCGTAAGCGAAGCTACGAGA+GGG | 0.698699 | 7.1:+38160989 | None:intergenic |
| GAAGGAGAGTATCATCAGCG+GGG | 0.713416 | 7.1:+38160951 | None:intergenic |
| AAGACAACAAGGAATACTTG+GGG | 0.756411 | 7.1:-38158334 | MS.gene89319:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAACTTAAAAACAA+AGG | + | chr7.1:38158584-38158603 | None:intergenic | 10.0% |
| !! | AAAAAAAACTTAAAAACAAA+GGG | + | chr7.1:38158583-38158602 | None:intergenic | 10.0% |
| !! | AAGATGTAAAAATTCTATAA+TGG | - | chr7.1:38158875-38158894 | MS.gene89319:intron | 15.0% |
| !! | AGTGAAATATAAACAAAAAA+TGG | + | chr7.1:38159776-38159795 | None:intergenic | 15.0% |
| !!! | AAAAAATTACGTTTGTTAAA+AGG | + | chr7.1:38158555-38158574 | None:intergenic | 15.0% |
| !!! | AGTTTCAATTATTTTTTTGT+TGG | - | chr7.1:38158683-38158702 | MS.gene89319:CDS | 15.0% |
| !!! | GTTTCAATTATTTTTTTGTT+GGG | - | chr7.1:38158684-38158703 | MS.gene89319:CDS | 15.0% |
| !! | AAAAACAAAACTTCACAAAA+GGG | + | chr7.1:38158759-38158778 | None:intergenic | 20.0% |
| !! | AAATATGTCATTGAAACATA+CGG | + | chr7.1:38159799-38159818 | None:intergenic | 20.0% |
| !! | AATATAAACAAAAAATGGAG+TGG | + | chr7.1:38159771-38159790 | None:intergenic | 20.0% |
| !! | TAAAAACAAAACTTCACAAA+AGG | + | chr7.1:38158760-38158779 | None:intergenic | 20.0% |
| !!! | AATGACATATTTTTTAAGTC+TGG | - | chr7.1:38159807-38159826 | MS.gene89319:intron | 20.0% |
| !!! | TAGAATTTTTACATCTTACA+AGG | + | chr7.1:38158872-38158891 | None:intergenic | 20.0% |
| !!! | TCATTTTCTCAAAATATTAC+TGG | - | chr7.1:38159099-38159118 | MS.gene89319:intron | 20.0% |
| !!! | TGAAGTTTTGTTTTTATTAG+TGG | - | chr7.1:38158764-38158783 | MS.gene89319:CDS | 20.0% |
| !!! | TTCATCCAATATCATTTTTT+CGG | + | chr7.1:38159424-38159443 | None:intergenic | 20.0% |
| !!! | TTTAGTTGATGTAAATAAAG+TGG | - | chr7.1:38159478-38159497 | MS.gene89319:intron | 20.0% |
| ! | AAAACAAAACTTCACAAAAG+GGG | + | chr7.1:38158758-38158777 | None:intergenic | 25.0% |
| ! | AAGAGATATTCAAATCTACA+AGG | + | chr7.1:38160192-38160211 | None:intergenic | 25.0% |
| ! | AATGAGCAATTTACATCTAA+TGG | + | chr7.1:38159959-38159978 | None:intergenic | 25.0% |
| ! | ATGAGCAATTTACATCTAAT+GGG | + | chr7.1:38159958-38159977 | None:intergenic | 25.0% |
| ! | GGATCTTAATAGAATGATAA+GGG | - | chr7.1:38158785-38158804 | MS.gene89319:CDS | 25.0% |
| ! | TGGATCTTAATAGAATGATA+AGG | - | chr7.1:38158784-38158803 | MS.gene89319:CDS | 25.0% |
| !! | AGAATGATAAGGGTTTTTAT+AGG | - | chr7.1:38158795-38158814 | MS.gene89319:CDS | 25.0% |
| !! | AGTGTCAATAATATTTCTAC+CGG | - | chr7.1:38159652-38159671 | MS.gene89319:intron | 25.0% |
| !! | ATTTACATCTAATGGGTAAA+AGG | + | chr7.1:38159951-38159970 | None:intergenic | 25.0% |
| !! | CATGTTCTGAACATTATTAT+TGG | - | chr7.1:38159024-38159043 | MS.gene89319:intron | 25.0% |
| !! | GAATGATAAGGGTTTTTATA+GGG | - | chr7.1:38158796-38158815 | MS.gene89319:CDS | 25.0% |
| !! | TTTTACATCTTACAAGGAAA+TGG | + | chr7.1:38158866-38158885 | None:intergenic | 25.0% |
| !!! | AAACCTTTTTTTTAGTCTGA+AGG | - | chr7.1:38160220-38160239 | MS.gene89319:intron | 25.0% |
| !!! | TTTTTCAATTATTTGCGTGT+AGG | - | chr7.1:38159865-38159884 | MS.gene89319:intron | 25.0% |
| AAAGACAACAAGGAATACTT+GGG | - | chr7.1:38161096-38161115 | MS.gene89319:CDS | 30.0% | |
| CAACCTTCAGACTAAAAAAA+AGG | + | chr7.1:38160226-38160245 | None:intergenic | 30.0% | |
| GTAGCAAATCAAAGAATCTT+TGG | + | chr7.1:38160154-38160173 | None:intergenic | 30.0% | |
| TTACAAGGAAATGGAACAAA+GGG | + | chr7.1:38158857-38158876 | None:intergenic | 30.0% | |
| TTCCACCGAAAAAATGATAT+TGG | - | chr7.1:38159416-38159435 | MS.gene89319:intron | 30.0% | |
| TTGAAAACAGTCACAACTAA+AGG | + | chr7.1:38160765-38160784 | None:intergenic | 30.0% | |
| ! | AAGATTTGTCTTTTGTAGTC+TGG | - | chr7.1:38159579-38159598 | MS.gene89319:intron | 30.0% |
| ! | AGATTTGTCTTTTGTAGTCT+GGG | - | chr7.1:38159580-38159599 | MS.gene89319:intron | 30.0% |
| ! | AGTCAAGTTAAAGCATGTTT+TGG | + | chr7.1:38159917-38159936 | None:intergenic | 30.0% |
| ! | TCAAATGTTGTTTATTGCTC+TGG | - | chr7.1:38159978-38159997 | MS.gene89319:intron | 30.0% |
| ! | TGTAGCAGAATTTGAACTTT+TGG | + | chr7.1:38159357-38159376 | None:intergenic | 30.0% |
| ! | TTAGTTGTGACTGTTTTCAA+AGG | - | chr7.1:38160765-38160784 | MS.gene89319:intron | 30.0% |
| !! | AAAACATGCTTTAACTTGAC+TGG | - | chr7.1:38159916-38159935 | MS.gene89319:intron | 30.0% |
| !! | GGATTTATTTTTCTCTGTCT+TGG | - | chr7.1:38159828-38159847 | MS.gene89319:intron | 30.0% |
| !! | TGTTCATTTTTACAGCGATT+TGG | - | chr7.1:38160981-38161000 | MS.gene89319:CDS | 30.0% |
| !!! | ATCCAATATCATTTTTTCGG+TGG | + | chr7.1:38159421-38159440 | None:intergenic | 30.0% |
| AAGACAACAAGGAATACTTG+GGG | - | chr7.1:38161097-38161116 | MS.gene89319:CDS | 35.0% | |
| ACACTGTAGTGTTATATCAC+TGG | - | chr7.1:38159290-38159309 | MS.gene89319:intron | 35.0% | |
| ACACTTCAGATCAAATCCTA+AGG | - | chr7.1:38158930-38158949 | MS.gene89319:intron | 35.0% | |
| ACTTTGAGCTACATTCAAAG+TGG | + | chr7.1:38159453-38159472 | None:intergenic | 35.0% | |
| AGATTCATCCGGATTCTTTA+TGG | + | chr7.1:38160856-38160875 | None:intergenic | 35.0% | |
| AGTTGAATAGTTCTTTCTCC+AGG | + | chr7.1:38160621-38160640 | None:intergenic | 35.0% | |
| ATATACTGATGATTGGCACT+AGG | - | chr7.1:38160367-38160386 | MS.gene89319:intron | 35.0% | |
| ATCTCAAAAGGAAAATCACC+GGG | + | chr7.1:38160588-38160607 | None:intergenic | 35.0% | |
| CAAAATGAGTGGTTTCATTG+TGG | + | chr7.1:38158420-38158439 | None:intergenic | 35.0% | |
| CAAAGACAACAAGGAATACT+TGG | - | chr7.1:38161095-38161114 | MS.gene89319:CDS | 35.0% | |
| CAAGCAGTGTTGTCAAATAT+CGG | + | chr7.1:38159388-38159407 | None:intergenic | 35.0% | |
| CAATTGTGTTGTGTGTATGT+GGG | - | chr7.1:38159516-38159535 | MS.gene89319:intron | 35.0% | |
| CATGTATTCCTGCAAAAAGT+TGG | + | chr7.1:38161070-38161089 | None:intergenic | 35.0% | |
| CATGTGCAAAACTATGATAC+CGG | + | chr7.1:38159674-38159693 | None:intergenic | 35.0% | |
| CATGTTCAACAAAGACAACA+AGG | - | chr7.1:38161086-38161105 | MS.gene89319:CDS | 35.0% | |
| CATTATCTGCAGATTATCTG+TGG | - | chr7.1:38160281-38160300 | MS.gene89319:intron | 35.0% | |
| CTATCATTCTCATTCTTCTC+GGG | + | chr7.1:38160729-38160748 | None:intergenic | 35.0% | |
| CTTACAAGGAAATGGAACAA+AGG | + | chr7.1:38158858-38158877 | None:intergenic | 35.0% | |
| GAGTGTCATATACTGATGAT+TGG | - | chr7.1:38160360-38160379 | MS.gene89319:intron | 35.0% | |
| GATCTCAAAAGGAAAATCAC+CGG | + | chr7.1:38160589-38160608 | None:intergenic | 35.0% | |
| GCTATCATTCTCATTCTTCT+CGG | + | chr7.1:38160730-38160749 | None:intergenic | 35.0% | |
| GCTCTTGAGGATAATAATGA+AGG | - | chr7.1:38158529-38158548 | MS.gene89319:intron | 35.0% | |
| GTTGAATAGTTCTTTCTCCA+GGG | + | chr7.1:38160620-38160639 | None:intergenic | 35.0% | |
| TATCAATCACAACCTCATCA+GGG | + | chr7.1:38160827-38160846 | None:intergenic | 35.0% | |
| TATCATTCTCATTCTTCTCG+GGG | + | chr7.1:38160728-38160747 | None:intergenic | 35.0% | |
| TCAATGTGTCAGTACTTCAT+AGG | - | chr7.1:38159049-38159068 | MS.gene89319:intron | 35.0% | |
| TCAATTGTGTTGTGTGTATG+TGG | - | chr7.1:38159515-38159534 | MS.gene89319:intron | 35.0% | |
| TCTGTGGTATAAGAAAATGC+AGG | - | chr7.1:38160297-38160316 | MS.gene89319:intron | 35.0% | |
| TGTTAGTGTCAGTACTTCAT+AGG | - | chr7.1:38159130-38159149 | MS.gene89319:intron | 35.0% | |
| TTATAGGGTTGTTAGTGTTG+TGG | - | chr7.1:38158811-38158830 | MS.gene89319:CDS | 35.0% | |
| TTGTTTATTGCTCTGGTTGA+GGG | - | chr7.1:38159985-38160004 | MS.gene89319:intron | 35.0% | |
| ! | AGCAGAATTTGAACTTTTGG+TGG | + | chr7.1:38159354-38159373 | None:intergenic | 35.0% |
| ! | GTCTTCTTTTGCTACTCATT+TGG | - | chr7.1:38159609-38159628 | MS.gene89319:intron | 35.0% |
| ! | GTGACTGTTTTCAAAGGAAA+TGG | - | chr7.1:38160771-38160790 | MS.gene89319:intron | 35.0% |
| ! | TAGCTTGTCCATAAAGAATC+CGG | - | chr7.1:38160845-38160864 | MS.gene89319:intron | 35.0% |
| ! | TAGGATTTGATCTGAAGTGT+GGG | + | chr7.1:38158930-38158949 | None:intergenic | 35.0% |
| ! | TGCAAAAAGTTGGTTGTGTT+GGG | + | chr7.1:38161060-38161079 | None:intergenic | 35.0% |
| ! | TTAGGATTTGATCTGAAGTG+TGG | + | chr7.1:38158931-38158950 | None:intergenic | 35.0% |
| !! | TACAGAGTGTTGTCAAATAG+TGG | + | chr7.1:38159225-38159244 | None:intergenic | 35.0% |
| !! | TGGTGTTATGTTTGGTATCA+TGG | - | chr7.1:38160026-38160045 | MS.gene89319:intron | 35.0% |
| !!! | TGATTTTCCTTTTGAGATCG+AGG | - | chr7.1:38160590-38160609 | MS.gene89319:intron | 35.0% |
| AATGGAGTGTGTATGGAGTT+TGG | - | chr7.1:38160789-38160808 | MS.gene89319:intron | 40.0% | |
| AGTGTTGTGGTGAATGTTTG+TGG | - | chr7.1:38158824-38158843 | MS.gene89319:CDS | 40.0% | |
| ATCAAATCCTAAGGTGTGTC+CGG | - | chr7.1:38158939-38158958 | MS.gene89319:intron | 40.0% | |
| ATGGAGTGTGTATGGAGTTT+GGG | - | chr7.1:38160790-38160809 | MS.gene89319:intron | 40.0% | |
| ATTGTGGGACAGATCTACAA+GGG | + | chr7.1:38160435-38160454 | None:intergenic | 40.0% | |
| CAAAGAATCTTTGGCATCAC+TGG | + | chr7.1:38160145-38160164 | None:intergenic | 40.0% | |
| CAAAGGAAATGGAGTGTGTA+TGG | - | chr7.1:38160782-38160801 | MS.gene89319:intron | 40.0% | |
| CAAGCAGTGTTGTCAAATGT+CGG | + | chr7.1:38159321-38159340 | None:intergenic | 40.0% | |
| CAATGACACATGTCAGATAC+CGG | + | chr7.1:38158961-38158980 | None:intergenic | 40.0% | |
| CTAAATGCTTACGTGAACTC+AGG | + | chr7.1:38160903-38160922 | None:intergenic | 40.0% | |
| CTATCAATCACAACCTCATC+AGG | + | chr7.1:38160828-38160847 | None:intergenic | 40.0% | |
| GAACAACAACAGCAGTTATG+AGG | + | chr7.1:38159702-38159721 | None:intergenic | 40.0% | |
| GCAAAGGCTCAAAATCATAG+TGG | + | chr7.1:38160088-38160107 | None:intergenic | 40.0% | |
| GTTGTTTATTGCTCTGGTTG+AGG | - | chr7.1:38159984-38160003 | MS.gene89319:intron | 40.0% | |
| TACTCGTGTTGTCAATGGAT+CGG | - | chr7.1:38159154-38159173 | MS.gene89319:intron | 40.0% | |
| TAGGTTACTCGTGTTGTCAA+TGG | - | chr7.1:38159149-38159168 | MS.gene89319:intron | 40.0% | |
| TATGTTTGGTATCATGGTGC+TGG | - | chr7.1:38160032-38160051 | MS.gene89319:intron | 40.0% | |
| TTGTAGATCTGTCCCACAAT+CGG | - | chr7.1:38160435-38160454 | MS.gene89319:intron | 40.0% | |
| TTTGGATGAAAACCTGCAGA+AGG | - | chr7.1:38160999-38161018 | MS.gene89319:CDS | 40.0% | |
| ! | CAACACAACCAACTTTTTGC+AGG | - | chr7.1:38161059-38161078 | MS.gene89319:CDS | 40.0% |
| ! | CTGCAAAAAGTTGGTTGTGT+TGG | + | chr7.1:38161061-38161080 | None:intergenic | 40.0% |
| ! | CTTTTCCAGCTTGAATTTCC+CGG | - | chr7.1:38160567-38160586 | MS.gene89319:intron | 40.0% |
| AATCACCGGGAAATTCAAGC+TGG | + | chr7.1:38160575-38160594 | None:intergenic | 45.0% | |
| ACAACAAGGAATACTTGGGG+TGG | - | chr7.1:38161100-38161119 | MS.gene89319:CDS | 45.0% | |
| ACTCGTGTTGTCAATGGATC+GGG | - | chr7.1:38159155-38159174 | MS.gene89319:intron | 45.0% | |
| ACTTGAGAAAAGCCTTCTGC+AGG | + | chr7.1:38161014-38161033 | None:intergenic | 45.0% | |
| ATTGTGGCGAAGGAGGTTAA+CGG | + | chr7.1:38158404-38158423 | None:intergenic | 45.0% | |
| CCCTGAAAAAGACCGATTGT+GGG | + | chr7.1:38160450-38160469 | None:intergenic | 45.0% | |
| GAAGACCAGCTGGTATATGA+GGG | - | chr7.1:38160876-38160895 | MS.gene89319:intron | 45.0% | |
| GATTGTGGGACAGATCTACA+AGG | + | chr7.1:38160436-38160455 | None:intergenic | 45.0% | |
| TCAAGTATCTCGAGATCCGA+GGG | - | chr7.1:38161028-38161047 | MS.gene89319:CDS | 45.0% | |
| TCTTGCGCTGTTACTAGTTC+AGG | + | chr7.1:38159563-38159582 | None:intergenic | 45.0% | |
| TGAAATCGACTGTGCTCTTG+AGG | - | chr7.1:38158516-38158535 | MS.gene89319:intron | 45.0% | |
| TGAAGACCAGCTGGTATATG+AGG | - | chr7.1:38160875-38160894 | MS.gene89319:intron | 45.0% | |
| TGGAGTGTGTATGGAGTTTG+GGG | - | chr7.1:38160791-38160810 | MS.gene89319:intron | 45.0% | |
| TTTCACTGTCAAGGACTCGA+AGG | + | chr7.1:38158501-38158520 | None:intergenic | 45.0% | |
| ! | ACGAGAGGGTACAAAATGAG+TGG | + | chr7.1:38158431-38158450 | None:intergenic | 45.0% |
| ! | CACAGTCGATTTCACTGTCA+AGG | + | chr7.1:38158510-38158529 | None:intergenic | 45.0% |
| ! | CTGGTTGAGGGTTTGTTTCA+AGG | - | chr7.1:38159997-38160016 | MS.gene89319:intron | 45.0% |
| ! | GGTTTGTTTCAAGGTCAGTC+TGG | - | chr7.1:38160006-38160025 | MS.gene89319:intron | 45.0% |
| ! | TCCCACAATCGGTCTTTTTC+AGG | - | chr7.1:38160446-38160465 | MS.gene89319:intron | 45.0% |
| ! | TTGTGTTGGGTGTTATCCCT+CGG | + | chr7.1:38161047-38161066 | None:intergenic | 45.0% |
| !! | AGCTGGTCTTCAGATTCATC+CGG | + | chr7.1:38160867-38160886 | None:intergenic | 45.0% |
| !! | CCCACAATCGGTCTTTTTCA+GGG | - | chr7.1:38160447-38160466 | MS.gene89319:intron | 45.0% |
| !! | GGTCAGTCTGGTGTTATGTT+TGG | - | chr7.1:38160018-38160037 | MS.gene89319:intron | 45.0% |
| !! | TCAAGTTGACATCCCTAACG+TGG | - | chr7.1:38160674-38160693 | MS.gene89319:intron | 45.0% |
| !! | TCGAAGGAGAGTATCATCAG+CGG | + | chr7.1:38158485-38158504 | None:intergenic | 45.0% |
| !!! | CCACAATCGGTCTTTTTCAG+GGG | - | chr7.1:38160448-38160467 | MS.gene89319:intron | 45.0% |
| AAAACCACAGTGGCTCACTG+TGG | - | chr7.1:38160108-38160127 | MS.gene89319:intron | 50.0% | |
| ACAGTGGCTCACTGTGGTTT+GGG | - | chr7.1:38160114-38160133 | MS.gene89319:intron | 50.0% | |
| ACCTCAACAGAGTGAGGATG+AGG | - | chr7.1:38160698-38160717 | MS.gene89319:intron | 50.0% | |
| CACATGTGTCAGTGTAGCGT+CGG | + | chr7.1:38158987-38159006 | None:intergenic | 50.0% | |
| CCCCTGAAAAAGACCGATTG+TGG | + | chr7.1:38160451-38160470 | None:intergenic | 50.0% | |
| CTCAAGTATCTCGAGATCCG+AGG | - | chr7.1:38161027-38161046 | MS.gene89319:CDS | 50.0% | |
| CTCGTGTTGTCAATGGATCG+GGG | - | chr7.1:38159156-38159175 | MS.gene89319:intron | 50.0% | |
| GAGCCTTTGCAAAACCACAG+TGG | - | chr7.1:38160098-38160117 | MS.gene89319:intron | 50.0% | |
| GAGTGGTTTCATTGTGGCGA+AGG | + | chr7.1:38158414-38158433 | None:intergenic | 50.0% | |
| GGATGAATCTGAAGACCAGC+TGG | - | chr7.1:38160866-38160885 | MS.gene89319:intron | 50.0% | |
| GGGTTGTCCTCGATCTCAAA+AGG | + | chr7.1:38160600-38160619 | None:intergenic | 50.0% | |
| TCAGATACCGGACACACCTT+AGG | + | chr7.1:38158949-38158968 | None:intergenic | 50.0% | |
| TCATAGTGGCTCCGTGCTTT+CGG | + | chr7.1:38160074-38160093 | None:intergenic | 50.0% | |
| TGGTTTCATTGTGGCGAAGG+AGG | + | chr7.1:38158411-38158430 | None:intergenic | 50.0% | |
| ! | GTTTGGTATCATGGTGCTGG+TGG | - | chr7.1:38160035-38160054 | MS.gene89319:intron | 50.0% |
| ! | TCTGTTGAGGTGCCACGTTA+GGG | + | chr7.1:38160689-38160708 | None:intergenic | 50.0% |
| ! | TTTGAGATCGAGGACAACCC+TGG | - | chr7.1:38160600-38160619 | MS.gene89319:intron | 50.0% |
| !! | AAGGAGAGTATCATCAGCGG+GGG | + | chr7.1:38158482-38158501 | None:intergenic | 50.0% |
| !! | CGAAGGAGAGTATCATCAGC+GGG | + | chr7.1:38158484-38158503 | None:intergenic | 50.0% |
| !! | GAAGGAGAGTATCATCAGCG+GGG | + | chr7.1:38158483-38158502 | None:intergenic | 50.0% |
| !! | GAGCCACTGTGGTTTTGCAA+AGG | + | chr7.1:38160104-38160123 | None:intergenic | 50.0% |
| !!! | ATCGGTCTTTTTCAGGGGTC+AGG | - | chr7.1:38160453-38160472 | MS.gene89319:intron | 50.0% |
| CAAACCACAGTGAGCCACTG+TGG | + | chr7.1:38160115-38160134 | None:intergenic | 55.0% | |
| CACAGTGGCTCACTGTGGTT+TGG | - | chr7.1:38160113-38160132 | MS.gene89319:intron | 55.0% | |
| CAGGTCCCTCATATACCAGC+TGG | + | chr7.1:38160884-38160903 | None:intergenic | 55.0% | |
| CCCTCTCGTAGCTTCGCTTA+CGG | - | chr7.1:38158442-38158461 | MS.gene89319:intron | 55.0% | |
| CCGTAAGCGAAGCTACGAGA+GGG | + | chr7.1:38158445-38158464 | None:intergenic | 55.0% | |
| GATTGCGCTGTGGAAGGTTC+TGG | + | chr7.1:38158380-38158399 | None:intergenic | 55.0% | |
| GCCTCATCCTCACTCTGTTG+AGG | + | chr7.1:38160702-38160721 | None:intergenic | 55.0% | |
| GGGTGCTAGTGCTACAGAGT+CGG | + | chr7.1:38158910-38158929 | None:intergenic | 55.0% | |
| GGTGACTGCTTTCCCTGATG+AGG | - | chr7.1:38160812-38160831 | MS.gene89319:intron | 55.0% | |
| TAGTGGCGCTGTAGCACTGT+AGG | + | chr7.1:38159208-38159227 | None:intergenic | 55.0% | |
| TGCTAGTGCTACAGAGTCGG+TGG | + | chr7.1:38158907-38158926 | None:intergenic | 55.0% | |
| TTGCGCCTTTGCCGAAAGCA+CGG | - | chr7.1:38160060-38160079 | MS.gene89319:intron | 55.0% | |
| ! | CTCTGTTGAGGTGCCACGTT+AGG | + | chr7.1:38160690-38160709 | None:intergenic | 55.0% |
| AACGGCGATTGCGCTGTGGA+AGG | + | chr7.1:38158386-38158405 | None:intergenic | 60.0% | |
| CGTGGCACCTCAACAGAGTG+AGG | - | chr7.1:38160692-38160711 | MS.gene89319:intron | 60.0% | |
| GCCGTAAGCGAAGCTACGAG+AGG | + | chr7.1:38158446-38158465 | None:intergenic | 60.0% | |
| GGTTAACGGCGATTGCGCTG+TGG | + | chr7.1:38158390-38158409 | None:intergenic | 60.0% | |
| TGGAGGAAGTTGCCGCTGCA+CGG | + | chr7.1:38158360-38158379 | None:intergenic | 60.0% | |
| TGGCTCCGTGCTTTCGGCAA+AGG | + | chr7.1:38160068-38160087 | None:intergenic | 60.0% | |
| ! | TGCGCTGTGGAAGGTTCTGG+AGG | + | chr7.1:38158377-38158396 | None:intergenic | 60.0% |
| CTGCACGGCGAGAGAGGAGA+GGG | + | chr7.1:38158345-38158364 | None:intergenic | 65.0% | |
| GCGAGAGAGGAGAGGGAGTG+CGG | + | chr7.1:38158338-38158357 | None:intergenic | 65.0% | |
| TCTCCTCTCTCGCCGTGCAG+CGG | - | chr7.1:38158345-38158364 | MS.gene89319:CDS | 65.0% | |
| GCTGCACGGCGAGAGAGGAG+AGG | + | chr7.1:38158346-38158365 | None:intergenic | 70.0% | |
| TTGCCGCTGCACGGCGAGAG+AGG | + | chr7.1:38158351-38158370 | None:intergenic | 70.0% | |
| ! | GAGGAGAGGGAGTGCGGCAG+CGG | + | chr7.1:38158332-38158351 | None:intergenic | 70.0% |
| AGCGGTGGCGCGACGGAGAG+CGG | + | chr7.1:38158314-38158333 | None:intergenic | 75.0% | |
| ! | GAGAGGGAGTGCGGCAGCGG+TGG | + | chr7.1:38158329-38158348 | None:intergenic | 75.0% |
| ! | GTGCGGCAGCGGTGGCGCGA+CGG | + | chr7.1:38158321-38158340 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 38158298 | 38161155 | 38158298 | ID=MS.gene89319 |
| chr7.1 | mRNA | 38158298 | 38161155 | 38158298 | ID=MS.gene89319.t1;Parent=MS.gene89319 |
| chr7.1 | exon | 38160889 | 38161155 | 38160889 | ID=MS.gene89319.t1.exon1;Parent=MS.gene89319.t1 |
| chr7.1 | CDS | 38160889 | 38161155 | 38160889 | ID=cds.MS.gene89319.t1;Parent=MS.gene89319.t1 |
| chr7.1 | exon | 38158543 | 38158877 | 38158543 | ID=MS.gene89319.t1.exon2;Parent=MS.gene89319.t1 |
| chr7.1 | CDS | 38158543 | 38158877 | 38158543 | ID=cds.MS.gene89319.t1;Parent=MS.gene89319.t1 |
| chr7.1 | exon | 38158298 | 38158457 | 38158298 | ID=MS.gene89319.t1.exon3;Parent=MS.gene89319.t1 |
| chr7.1 | CDS | 38158298 | 38158457 | 38158298 | ID=cds.MS.gene89319.t1;Parent=MS.gene89319.t1 |
| Gene Sequence |
| Protein sequence |
