Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000604.t1 | XP_003604201.1 | 90.3 | 238 | 18 | 2 | 1 | 234 | 1 | 237 | 4.00E-113 | 417.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000604.t1 | Q8W487 | 29.3 | 239 | 162 | 4 | 2 | 233 | 12 | 250 | 5.2e-21 | 102.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000604.t1 | G7JD84 | 90.3 | 238 | 18 | 2 | 1 | 234 | 1 | 237 | 2.9e-113 | 417.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000604.t1 | MTR_4g006560 | 89.496 | 238 | 20 | 2 | 1 | 234 | 1 | 237 | 5.53e-149 | 414 |
| MS.gene000604.t1 | MTR_1g013120 | 44.503 | 191 | 102 | 4 | 45 | 233 | 45 | 233 | 2.85e-56 | 179 |
| MS.gene000604.t1 | MTR_7g063520 | 33.175 | 211 | 127 | 5 | 33 | 233 | 48 | 254 | 6.08e-29 | 109 |
| MS.gene000604.t1 | MTR_5g080880 | 38.506 | 174 | 91 | 4 | 74 | 232 | 82 | 254 | 8.58e-29 | 110 |
| MS.gene000604.t1 | MTR_5g080870 | 28.659 | 164 | 98 | 4 | 69 | 232 | 75 | 219 | 7.74e-13 | 67.0 |
| MS.gene000604.t1 | MTR_5g093000 | 25.434 | 173 | 111 | 6 | 69 | 234 | 54 | 215 | 1.61e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000604.t1 | AT1G15870 | 52.653 | 245 | 102 | 5 | 1 | 234 | 1 | 242 | 6.00e-85 | 253 |
| MS.gene000604.t1 | AT1G80720 | 53.252 | 246 | 99 | 7 | 1 | 234 | 1 | 242 | 5.69e-81 | 243 |
| MS.gene000604.t1 | AT1G80720 | 58.763 | 194 | 74 | 4 | 43 | 234 | 1 | 190 | 2.60e-75 | 226 |
| MS.gene000604.t1 | AT4G31930 | 39.496 | 238 | 135 | 6 | 1 | 233 | 1 | 234 | 1.04e-51 | 167 |
| MS.gene000604.t1 | AT2G39795 | 29.289 | 239 | 162 | 4 | 2 | 233 | 12 | 250 | 7.22e-27 | 104 |
| MS.gene000604.t1 | AT3G55605 | 34.146 | 164 | 96 | 3 | 80 | 233 | 97 | 258 | 1.69e-25 | 100 |
| MS.gene000604.t1 | AT5G02050 | 29.952 | 207 | 130 | 6 | 41 | 233 | 62 | 267 | 2.57e-24 | 97.8 |
| MS.gene000604.t1 | AT5G05990 | 27.976 | 168 | 106 | 2 | 80 | 232 | 91 | 258 | 7.80e-20 | 85.9 |
| MS.gene000604.t1 | AT2G39790 | 27.149 | 221 | 146 | 6 | 18 | 232 | 28 | 239 | 1.45e-17 | 79.3 |
| MS.gene000604.t1 | AT4G32605 | 31.183 | 93 | 59 | 2 | 146 | 233 | 127 | 219 | 9.51e-13 | 65.9 |
Find 53 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGAGATGTAAGTTCTTC+TGG | 0.225637 | 4.3:+88680750 | None:intergenic |
| CGAAAGCTTCTTTGCGCATT+TGG | 0.227889 | 4.3:+88680731 | None:intergenic |
| CTTGGAGATATTGACAATTA+AGG | 0.236484 | 4.3:+88678007 | None:intergenic |
| ATTTGCCAATGAAAACATTA+AGG | 0.265158 | 4.3:-88678117 | MS.gene000604:CDS |
| AATGGGAATTTGGTTGATTA+GGG | 0.289613 | 4.3:+88680822 | None:intergenic |
| GAATGGGAATTTGGTTGATT+AGG | 0.302269 | 4.3:+88680821 | None:intergenic |
| CGGACAGTATAGTGATAAAA+AGG | 0.337671 | 4.3:-88677944 | MS.gene000604:CDS |
| GGATAGTCTTTACGATTTCT+TGG | 0.338117 | 4.3:-88677590 | MS.gene000604:CDS |
| GTTGTTGTTGAATGGGAATT+TGG | 0.349399 | 4.3:+88680812 | None:intergenic |
| GTTGAAGCCACCATGTTTGA+TGG | 0.365174 | 4.3:-88678095 | MS.gene000604:CDS |
| TTTACGATTTCTTGGAAGTA+AGG | 0.369810 | 4.3:-88677582 | MS.gene000604:CDS |
| GTTGATTCTTTACAGGGAAC+TGG | 0.376425 | 4.3:-88677626 | MS.gene000604:intron |
| GAAAGCTTCTTTGCGCATTT+GGG | 0.378478 | 4.3:+88680732 | None:intergenic |
| GGAACTGGATGATGAGTTGC+AGG | 0.401530 | 4.3:-88677611 | MS.gene000604:CDS |
| AATCATGTGCTCTGCTTGGC+CGG | 0.413847 | 4.3:-88677964 | MS.gene000604:CDS |
| AATTTCATTACGAAGAAGTC+TGG | 0.426508 | 4.3:+88680696 | None:intergenic |
| TTCGGTTCATTTGTGGTGGA+TGG | 0.428242 | 4.3:-88678176 | MS.gene000604:CDS |
| TGACAAGTTCGGTTCATTTG+TGG | 0.433809 | 4.3:-88678183 | MS.gene000604:CDS |
| GCATAGTCGTTGTTGTTGAA+TGG | 0.459987 | 4.3:+88680804 | None:intergenic |
| CTGGAGATGATTTGAGAAGA+AGG | 0.473022 | 4.3:+88680769 | None:intergenic |
| TTGCAGCCTACTGACAAGTT+CGG | 0.474006 | 4.3:-88678194 | MS.gene000604:intron |
| AATGTAATCCATCGCTCACC+GGG | 0.484386 | 4.3:+88678149 | None:intergenic |
| AAGTAAACTTACTCAAAGTC+AGG | 0.487021 | 4.3:+88677873 | None:intergenic |
| CAATGTAATCCATCGCTCAC+CGG | 0.493071 | 4.3:+88678148 | None:intergenic |
| CTCAAAGTCAGGACCAGCAT+AGG | 0.500380 | 4.3:+88677884 | None:intergenic |
| CATAGTCGTTGTTGTTGAAT+GGG | 0.501011 | 4.3:+88680805 | None:intergenic |
| CAAGGGAGATGGTCATGTGC+TGG | 0.502080 | 4.3:-88677988 | MS.gene000604:CDS |
| CAGCACATGACCATCTCCCT+TGG | 0.512206 | 4.3:+88677989 | None:intergenic |
| AACAGAGATCATAGGATGGA+TGG | 0.515569 | 4.3:-88677503 | MS.gene000604:CDS |
| AAGGAGAAAACAGAGATCAT+AGG | 0.519039 | 4.3:-88677511 | MS.gene000604:CDS |
| GTCAATATCTCCAAGGGAGA+TGG | 0.521988 | 4.3:-88677999 | MS.gene000604:CDS |
| TTACGATTTCTTGGAAGTAA+GGG | 0.523724 | 4.3:-88677581 | MS.gene000604:CDS |
| TGGAAATCATGTGCTCTGCT+TGG | 0.524404 | 4.3:-88677968 | MS.gene000604:CDS |
| GAACGGAACAAACGTGCCAT+TGG | 0.527520 | 4.3:+88680856 | None:intergenic |
| CAAGTTCGGTTCATTTGTGG+TGG | 0.534990 | 4.3:-88678180 | MS.gene000604:CDS |
| AAAATACTTACAGGATTGGA+AGG | 0.538098 | 4.3:+88680649 | None:intergenic |
| TACAGGATTGGAAGGAGAAG+AGG | 0.540707 | 4.3:+88680657 | None:intergenic |
| ATGATTTGAGAAGAAGGAGA+AGG | 0.541837 | 4.3:+88680775 | None:intergenic |
| ATGACAGCTGAGCCCTATGC+TGG | 0.544341 | 4.3:-88677897 | MS.gene000604:CDS |
| ATGGCCGACCCGGTGAGCGA+TGG | 0.552023 | 4.3:-88678157 | MS.gene000604:CDS |
| TTTGTGGTGGATGGCCGACC+CGG | 0.552350 | 4.3:-88678167 | MS.gene000604:CDS |
| CTTAATTGTCAATATCTCCA+AGG | 0.564925 | 4.3:-88678006 | MS.gene000604:CDS |
| TCAAAGTCAGGACCAGCATA+GGG | 0.570818 | 4.3:+88677885 | None:intergenic |
| TTAATTGTCAATATCTCCAA+GGG | 0.571494 | 4.3:-88678005 | MS.gene000604:CDS |
| TACGATTTCTTGGAAGTAAG+GGG | 0.573631 | 4.3:-88677580 | MS.gene000604:CDS |
| TAATCCATCGCTCACCGGGT+CGG | 0.605600 | 4.3:+88678153 | None:intergenic |
| AGAAAACAGAGATCATAGGA+TGG | 0.614854 | 4.3:-88677507 | MS.gene000604:CDS |
| AGGAACAGCTCCATCAAACA+TGG | 0.627059 | 4.3:+88678085 | None:intergenic |
| GATCATAGGATGGATGGAGA+AGG | 0.628625 | 4.3:-88677497 | MS.gene000604:CDS |
| AATGAACCGAACTTGTCAGT+AGG | 0.644093 | 4.3:+88678188 | None:intergenic |
| ATGCGCAAAGAAGCTTTCGA+AGG | 0.659024 | 4.3:-88680727 | MS.gene000604:CDS |
| AACAGCTCCATCAAACATGG+TGG | 0.722000 | 4.3:+88678088 | None:intergenic |
| GCATCAGTACATGAAACACA+AGG | 0.733324 | 4.3:-88677530 | MS.gene000604:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACTGATTTTTTAAAATTA+AGG | - | chr4.3:88678298-88678317 | MS.gene000604:intron | 10.0% |
| !! | AAGATGAAATAAAGTTAAAT+TGG | - | chr4.3:88678009-88678028 | MS.gene000604:CDS | 15.0% |
| !!! | AGAACTTTTTACTTTTTTTA+AGG | - | chr4.3:88677791-88677810 | MS.gene000604:intron | 15.0% |
| !!! | ATATAAAGAATCTTTTTGAT+TGG | + | chr4.3:88678521-88678540 | None:intergenic | 15.0% |
| !!! | ATTTTGAAAAATAAAGTTGT+GGG | - | chr4.3:88679164-88679183 | MS.gene000604:intron | 15.0% |
| !!! | CAACTTAATTTTTTAAAATC+AGG | + | chr4.3:88678853-88678872 | None:intergenic | 15.0% |
| !!! | TTTATATTTTGTTATAGACA+TGG | - | chr4.3:88678534-88678553 | MS.gene000604:intron | 15.0% |
| !! | AAAAAAAATACTTACAGGAT+TGG | + | chr4.3:88677682-88677701 | None:intergenic | 20.0% |
| !! | GAGAAAAAAAAAATACTTAC+AGG | + | chr4.3:88677687-88677706 | None:intergenic | 20.0% |
| !! | GTACAATCAATTTCAAAATA+CGG | + | chr4.3:88679680-88679699 | None:intergenic | 20.0% |
| !! | TTTGGTATAACTTAAGAAAA+CGG | + | chr4.3:88678135-88678154 | None:intergenic | 20.0% |
| !!! | AATTTTTTAAAATCAGGCAT+GGG | + | chr4.3:88678847-88678866 | None:intergenic | 20.0% |
| !!! | ACTATTGCATAATAGAATTT+TGG | - | chr4.3:88680636-88680655 | MS.gene000604:intron | 20.0% |
| !!! | AGTTAAACTGTTTTTTGTAT+AGG | - | chr4.3:88678354-88678373 | MS.gene000604:intron | 20.0% |
| !!! | ATGGTGTTTTTATTTCTAAA+AGG | - | chr4.3:88679944-88679963 | MS.gene000604:intron | 20.0% |
| !!! | CAACTTAATTTTACAAAATC+AGG | + | chr4.3:88679421-88679440 | None:intergenic | 20.0% |
| !!! | CAACTTTATTTTTCAAAATC+AGG | + | chr4.3:88679163-88679182 | None:intergenic | 20.0% |
| !!! | CCAAAATAGTATATTTTCAT+CGG | + | chr4.3:88679636-88679655 | None:intergenic | 20.0% |
| !!! | CTGATTTTTTAAAATTAAGG+TGG | - | chr4.3:88678301-88678320 | MS.gene000604:intron | 20.0% |
| !!! | GATTTTGAAAAATAAAGTTG+TGG | - | chr4.3:88679163-88679182 | MS.gene000604:intron | 20.0% |
| !!! | TAATTTTACAAAATCAGGTA+TGG | + | chr4.3:88679416-88679435 | None:intergenic | 20.0% |
| !!! | TAATTTTTTAAAATCAGGCA+TGG | + | chr4.3:88678848-88678867 | None:intergenic | 20.0% |
| !!! | TTACTTTTTTTAAGGTAGTT+TGG | - | chr4.3:88677799-88677818 | MS.gene000604:intron | 20.0% |
| !!! | TTTAGCTTTTTCCTAAATAT+CGG | - | chr4.3:88679208-88679227 | MS.gene000604:intron | 20.0% |
| !!! | TTTTTTTATCAAGGTAGAAA+GGG | - | chr4.3:88679379-88679398 | MS.gene000604:intron | 20.0% |
| ! | AACATCTTGTGTAAAAAACA+GGG | - | chr4.3:88678701-88678720 | MS.gene000604:intron | 25.0% |
| ! | AAGTTGTTTATCCAAAAACA+GGG | + | chr4.3:88677921-88677940 | None:intergenic | 25.0% |
| ! | AGTTGAAATTGAATGGATAA+TGG | - | chr4.3:88679355-88679374 | MS.gene000604:intron | 25.0% |
| ! | ATAAGCAATTGGAAATTGTT+TGG | + | chr4.3:88678153-88678172 | None:intergenic | 25.0% |
| ! | ATGTCTATAACAAAAGATGA+AGG | + | chr4.3:88678214-88678233 | None:intergenic | 25.0% |
| ! | ATTCAAACAAAGTCTTAAAG+TGG | - | chr4.3:88678611-88678630 | MS.gene000604:intron | 25.0% |
| ! | ATTCAGATTAAGACAATAGT+TGG | + | chr4.3:88679120-88679139 | None:intergenic | 25.0% |
| ! | ATTTGCCAATGAAAACATTA+AGG | - | chr4.3:88680207-88680226 | MS.gene000604:intron | 25.0% |
| ! | CTTGTAGACATGAATAATTA+GGG | - | chr4.3:88680095-88680114 | MS.gene000604:intron | 25.0% |
| ! | TAAGACTCTGTTTGAATAAA+GGG | + | chr4.3:88678766-88678785 | None:intergenic | 25.0% |
| ! | TAAGTTGTTTATCCAAAAAC+AGG | + | chr4.3:88677922-88677941 | None:intergenic | 25.0% |
| ! | TAGTTAGAACTAGAGTTAAA+GGG | + | chr4.3:88679719-88679738 | None:intergenic | 25.0% |
| ! | TCAAAATACGGTTATAAAAG+TGG | + | chr4.3:88679668-88679687 | None:intergenic | 25.0% |
| ! | TCTTGTAGACATGAATAATT+AGG | - | chr4.3:88680094-88680113 | MS.gene000604:intron | 25.0% |
| ! | TGATACCATTTGTTCAAATT+CGG | + | chr4.3:88680559-88680578 | None:intergenic | 25.0% |
| ! | TGTAAAGAATCAACATTAAG+AGG | + | chr4.3:88680692-88680711 | None:intergenic | 25.0% |
| ! | TGTCTATAACAAAAGATGAA+GGG | + | chr4.3:88678213-88678232 | None:intergenic | 25.0% |
| ! | TTAATTGTCAATATCTCCAA+GGG | - | chr4.3:88680319-88680338 | MS.gene000604:intron | 25.0% |
| ! | TTAGTTAGAACTAGAGTTAA+AGG | + | chr4.3:88679720-88679739 | None:intergenic | 25.0% |
| ! | TTCAAACAAAGTCTTAAAGT+GGG | - | chr4.3:88678612-88678631 | MS.gene000604:intron | 25.0% |
| ! | TTTACATTCTTCCTAAAATC+AGG | - | chr4.3:88678897-88678916 | MS.gene000604:intron | 25.0% |
| !! | ACTTATTTGAGTTTATCTAC+TGG | + | chr4.3:88678177-88678196 | None:intergenic | 25.0% |
| !! | CCGATGAAAATATACTATTT+TGG | - | chr4.3:88679633-88679652 | MS.gene000604:intron | 25.0% |
| !! | GTCTTAATCTGAATGTTTTT+GGG | - | chr4.3:88679126-88679145 | MS.gene000604:intron | 25.0% |
| !! | TAGAATGTTTAGAGTTTGTT+TGG | - | chr4.3:88679243-88679262 | MS.gene000604:intron | 25.0% |
| !! | TGGATAAACAACTTAATTTG+TGG | - | chr4.3:88677927-88677946 | MS.gene000604:CDS | 25.0% |
| !! | TGTCTTAATCTGAATGTTTT+TGG | - | chr4.3:88679125-88679144 | MS.gene000604:intron | 25.0% |
| !! | TTCAACCTTAATGTTTTCAT+TGG | + | chr4.3:88680215-88680234 | None:intergenic | 25.0% |
| !!! | AACTTAACTTGCTATAGATA+TGG | - | chr4.3:88679053-88679072 | MS.gene000604:intron | 25.0% |
| !!! | CTTAATGTTGATTCTTTACA+GGG | - | chr4.3:88680692-88680711 | MS.gene000604:CDS | 25.0% |
| !!! | CTTTTTTTATCAAGGTAGAA+AGG | - | chr4.3:88679378-88679397 | MS.gene000604:intron | 25.0% |
| !!! | GATAATGGCTTTTTTTATCA+AGG | - | chr4.3:88679370-88679389 | MS.gene000604:intron | 25.0% |
| !!! | GATTTTAATTTCCCTGTTTT+TGG | - | chr4.3:88677907-88677926 | MS.gene000604:CDS | 25.0% |
| !!! | TCTTAATGTTGATTCTTTAC+AGG | - | chr4.3:88680691-88680710 | MS.gene000604:CDS | 25.0% |
| !!! | TTAGCTTTTTCCTAAATATC+GGG | - | chr4.3:88679209-88679228 | MS.gene000604:intron | 25.0% |
| !!! | TTGAAGACTTGATATTTTGA+TGG | - | chr4.3:88679911-88679930 | MS.gene000604:intron | 25.0% |
| AAAATACTTACAGGATTGGA+AGG | + | chr4.3:88677678-88677697 | None:intergenic | 30.0% | |
| AAGTAAACTTACTCAAAGTC+AGG | + | chr4.3:88680454-88680473 | None:intergenic | 30.0% | |
| AATAGCCGAATTTGAACAAA+TGG | - | chr4.3:88680551-88680570 | MS.gene000604:intron | 30.0% | |
| AATGGGAATTTGGTTGATTA+GGG | + | chr4.3:88677505-88677524 | None:intergenic | 30.0% | |
| AATTTCATTACGAAGAAGTC+TGG | + | chr4.3:88677631-88677650 | None:intergenic | 30.0% | |
| ACATCTTGTGTAAAAAACAG+GGG | - | chr4.3:88678702-88678721 | MS.gene000604:intron | 30.0% | |
| AGTTATGAAACCCGATATTT+AGG | + | chr4.3:88679222-88679241 | None:intergenic | 30.0% | |
| ATGCGCTATTTAGTACAAAA+TGG | - | chr4.3:88680593-88680612 | MS.gene000604:intron | 30.0% | |
| ATTCAGATGAAGACAATGTT+AGG | + | chr4.3:88678260-88678279 | None:intergenic | 30.0% | |
| CAACATCTTGTGTAAAAAAC+AGG | - | chr4.3:88678700-88678719 | MS.gene000604:intron | 30.0% | |
| CTAAGACTCTGTTTGAATAA+AGG | + | chr4.3:88678767-88678786 | None:intergenic | 30.0% | |
| CTTAATTGTCAATATCTCCA+AGG | - | chr4.3:88680318-88680337 | MS.gene000604:intron | 30.0% | |
| CTTAATTGTGTAAACTGTTG+TGG | - | chr4.3:88679586-88679605 | MS.gene000604:intron | 30.0% | |
| CTTCTTCCTAAAATGTGTTT+AGG | - | chr4.3:88678816-88678835 | MS.gene000604:intron | 30.0% | |
| CTTGGAGATATTGACAATTA+AGG | + | chr4.3:88680320-88680339 | None:intergenic | 30.0% | |
| CTTTGTTCTTGTTAGAATCA+TGG | - | chr4.3:88677760-88677779 | MS.gene000604:intron | 30.0% | |
| TAGTTTCTTCCCAATAATCA+GGG | - | chr4.3:88679468-88679487 | MS.gene000604:intron | 30.0% | |
| TATCTACTGGTATAAGCAAT+TGG | + | chr4.3:88678164-88678183 | None:intergenic | 30.0% | |
| TCTCAGAAGTTGAAATTGAA+TGG | - | chr4.3:88679348-88679367 | MS.gene000604:intron | 30.0% | |
| TGATTGTAAGCAAACAAGTA+GGG | + | chr4.3:88680489-88680508 | None:intergenic | 30.0% | |
| TTACGATTTCTTGGAAGTAA+GGG | - | chr4.3:88680743-88680762 | MS.gene000604:CDS | 30.0% | |
| TTTACGATTTCTTGGAAGTA+AGG | - | chr4.3:88680742-88680761 | MS.gene000604:CDS | 30.0% | |
| TTTGTTTGGATAAACTGTTG+TGG | - | chr4.3:88679257-88679276 | MS.gene000604:intron | 30.0% | |
| ! | CCTAGAATCTAAAACAAACT+TGG | - | chr4.3:88679859-88679878 | MS.gene000604:intron | 30.0% |
| ! | CTGTTTTCATAAGCTCAAAA+CGG | - | chr4.3:88678051-88678070 | MS.gene000604:CDS | 30.0% |
| ! | CTTTTTATCACTATACTGTC+CGG | + | chr4.3:88680382-88680401 | None:intergenic | 30.0% |
| ! | TACAAAATGGTGTCAAATAG+AGG | - | chr4.3:88680606-88680625 | MS.gene000604:intron | 30.0% |
| ! | TAGCTATGAAACCTGATTTT+AGG | + | chr4.3:88678911-88678930 | None:intergenic | 30.0% |
| ! | TTTGGTTGATTAGGGTTTTT+CGG | + | chr4.3:88677497-88677516 | None:intergenic | 30.0% |
| !! | GGTTTTTGTTATGGGAAAAT+GGG | - | chr4.3:88677724-88677743 | MS.gene000604:intron | 30.0% |
| !! | TCTCTTGTTGTTTGTGTAAT+GGG | - | chr4.3:88677703-88677722 | MS.gene000604:intron | 30.0% |
| !! | TTCTCTTGTTGTTTGTGTAA+TGG | - | chr4.3:88677702-88677721 | MS.gene000604:intron | 30.0% |
| !! | TTTTGATGGCAATAAGTCAA+TGG | - | chr4.3:88679925-88679944 | MS.gene000604:intron | 30.0% |
| !!! | AGCTTTTTTCAGTTGGATTT+TGG | - | chr4.3:88680062-88680081 | MS.gene000604:intron | 30.0% |
| !!! | ATTCTCTAGCTTTTTTCAGT+TGG | - | chr4.3:88680055-88680074 | MS.gene000604:intron | 30.0% |
| !!! | CCAAGTTTGTTTTAGATTCT+AGG | + | chr4.3:88679862-88679881 | None:intergenic | 30.0% |
| !!! | GTGTAATGGGTTTTTGTTAT+GGG | - | chr4.3:88677716-88677735 | MS.gene000604:intron | 30.0% |
| !!! | TGTGTAATGGGTTTTTGTTA+TGG | - | chr4.3:88677715-88677734 | MS.gene000604:intron | 30.0% |
| AAGGAGAAAACAGAGATCAT+AGG | - | chr4.3:88680813-88680832 | MS.gene000604:CDS | 35.0% | |
| AGAAAACAGAGATCATAGGA+TGG | - | chr4.3:88680817-88680836 | MS.gene000604:CDS | 35.0% | |
| AGTTTCTTCCCAATAATCAG+GGG | - | chr4.3:88679469-88679488 | MS.gene000604:intron | 35.0% | |
| ATAAGCTAAACTCTCTTGGA+TGG | - | chr4.3:88677851-88677870 | MS.gene000604:intron | 35.0% | |
| ATGATTTGAGAAGAAGGAGA+AGG | + | chr4.3:88677552-88677571 | None:intergenic | 35.0% | |
| CAGGTTTCATAGCTACAAAA+TGG | - | chr4.3:88678916-88678935 | MS.gene000604:intron | 35.0% | |
| CGGACAGTATAGTGATAAAA+AGG | - | chr4.3:88680380-88680399 | MS.gene000604:intron | 35.0% | |
| CTGATTGTAAGCAAACAAGT+AGG | + | chr4.3:88680490-88680509 | None:intergenic | 35.0% | |
| CTTTGCAACTAGTATCGTTT+GGG | - | chr4.3:88680029-88680048 | MS.gene000604:intron | 35.0% | |
| GAATGGGAATTTGGTTGATT+AGG | + | chr4.3:88677506-88677525 | None:intergenic | 35.0% | |
| GGATAGTCTTTACGATTTCT+TGG | - | chr4.3:88680734-88680753 | MS.gene000604:CDS | 35.0% | |
| GTAAAGACAAACAGTGCATT+TGG | + | chr4.3:88679891-88679910 | None:intergenic | 35.0% | |
| GTAGTTTCTTCCCAATAATC+AGG | - | chr4.3:88679467-88679486 | MS.gene000604:intron | 35.0% | |
| TACGATTTCTTGGAAGTAAG+GGG | - | chr4.3:88680744-88680763 | MS.gene000604:CDS | 35.0% | |
| TATCTACCAACATAAGCACT+TGG | + | chr4.3:88678486-88678505 | None:intergenic | 35.0% | |
| TCATAAGCTCAAAACGGTTT+AGG | - | chr4.3:88678057-88678076 | MS.gene000604:CDS | 35.0% | |
| TCTTTGCAACTAGTATCGTT+TGG | - | chr4.3:88680028-88680047 | MS.gene000604:intron | 35.0% | |
| TTATCAAGGTAGAAAGGGTA+AGG | - | chr4.3:88679384-88679403 | MS.gene000604:intron | 35.0% | |
| TTGCATAAGCTAAACTCTCT+TGG | - | chr4.3:88677847-88677866 | MS.gene000604:intron | 35.0% | |
| TTGTACTAAATAGCGCATCA+CGG | + | chr4.3:88680591-88680610 | None:intergenic | 35.0% | |
| TTTGCAACTAGTATCGTTTG+GGG | - | chr4.3:88680030-88680049 | MS.gene000604:intron | 35.0% | |
| ! | ATAAGCACTTGGAGACTTTT+TGG | + | chr4.3:88678475-88678494 | None:intergenic | 35.0% |
| ! | CATAGTCGTTGTTGTTGAAT+GGG | + | chr4.3:88677522-88677541 | None:intergenic | 35.0% |
| ! | CTAGTTTGTGTAAACTGTTG+TGG | - | chr4.3:88679515-88679534 | MS.gene000604:intron | 35.0% |
| ! | GAAGCTCCTAAACACATTTT+AGG | + | chr4.3:88678825-88678844 | None:intergenic | 35.0% |
| ! | GTTGTTGTTGAATGGGAATT+TGG | + | chr4.3:88677515-88677534 | None:intergenic | 35.0% |
| ! | TACAAAATGGTTAGCTAGTG+CGG | - | chr4.3:88678929-88678948 | MS.gene000604:intron | 35.0% |
| !! | GGGTTTTTGTTATGGGAAAA+TGG | - | chr4.3:88677723-88677742 | MS.gene000604:intron | 35.0% |
| !! | TTACACAAGATGTTGTTTCC+AGG | + | chr4.3:88678695-88678714 | None:intergenic | 35.0% |
| AACAGAGATCATAGGATGGA+TGG | - | chr4.3:88680821-88680840 | MS.gene000604:CDS | 40.0% | |
| AAGTCTCCAAGTGCTTATGT+TGG | - | chr4.3:88678477-88678496 | MS.gene000604:intron | 40.0% | |
| AAGTCTTAAAGTGGGAACCT+TGG | - | chr4.3:88678620-88678639 | MS.gene000604:intron | 40.0% | |
| AATACACCAATTAGTGCACC+GGG | - | chr4.3:88678737-88678756 | MS.gene000604:intron | 40.0% | |
| AATGAACCGAACTTGTCAGT+AGG | + | chr4.3:88680139-88680158 | None:intergenic | 40.0% | |
| CAATACACCAATTAGTGCAC+CGG | - | chr4.3:88678736-88678755 | MS.gene000604:intron | 40.0% | |
| CTGGAGATGATTTGAGAAGA+AGG | + | chr4.3:88677558-88677577 | None:intergenic | 40.0% | |
| CTTGTGTAAAAAACAGGGGA+AGG | - | chr4.3:88678706-88678725 | MS.gene000604:intron | 40.0% | |
| GAAAGCTTCTTTGCGCATTT+GGG | + | chr4.3:88677595-88677614 | None:intergenic | 40.0% | |
| GCATCAGTACATGAAACACA+AGG | - | chr4.3:88680794-88680813 | MS.gene000604:CDS | 40.0% | |
| TGACAAGTTCGGTTCATTTG+TGG | - | chr4.3:88680141-88680160 | MS.gene000604:intron | 40.0% | |
| TTGGGAGATGTAAGTTCTTC+TGG | + | chr4.3:88677577-88677596 | None:intergenic | 40.0% | |
| ! | GCATAGTCGTTGTTGTTGAA+TGG | + | chr4.3:88677523-88677542 | None:intergenic | 40.0% |
| ! | GTTGATTCTTTACAGGGAAC+TGG | - | chr4.3:88680698-88680717 | MS.gene000604:CDS | 40.0% |
| !! | TTAGGGTTTTTCGGAGAGAA+CGG | + | chr4.3:88677488-88677507 | None:intergenic | 40.0% |
| AACAGCTCCATCAAACATGG+TGG | + | chr4.3:88680239-88680258 | None:intergenic | 45.0% | |
| AATGTAATCCATCGCTCACC+GGG | + | chr4.3:88680178-88680197 | None:intergenic | 45.0% | |
| ACAAGTTTACTGTTGCGCCA+AGG | + | chr4.3:88678640-88678659 | None:intergenic | 45.0% | |
| AGCCATGACCCCTGATTATT+GGG | + | chr4.3:88679480-88679499 | None:intergenic | 45.0% | |
| AGGAACAGCTCCATCAAACA+TGG | + | chr4.3:88680242-88680261 | None:intergenic | 45.0% | |
| ATGCGCAAAGAAGCTTTCGA+AGG | - | chr4.3:88677597-88677616 | MS.gene000604:CDS | 45.0% | |
| CAAGTTCGGTTCATTTGTGG+TGG | - | chr4.3:88680144-88680163 | MS.gene000604:intron | 45.0% | |
| CAATGTAATCCATCGCTCAC+CGG | + | chr4.3:88680179-88680198 | None:intergenic | 45.0% | |
| CGAAAGCTTCTTTGCGCATT+TGG | + | chr4.3:88677596-88677615 | None:intergenic | 45.0% | |
| GATCATAGGATGGATGGAGA+AGG | - | chr4.3:88680827-88680846 | MS.gene000604:CDS | 45.0% | |
| GTCAATATCTCCAAGGGAGA+TGG | - | chr4.3:88680325-88680344 | MS.gene000604:intron | 45.0% | |
| GTTCCTGCTCCGAAAAAAAG+CGG | - | chr4.3:88680256-88680275 | MS.gene000604:intron | 45.0% | |
| GTTGAAGCCACCATGTTTGA+TGG | - | chr4.3:88680229-88680248 | MS.gene000604:intron | 45.0% | |
| TACAGGATTGGAAGGAGAAG+AGG | + | chr4.3:88677670-88677689 | None:intergenic | 45.0% | |
| TCAAAGTCAGGACCAGCATA+GGG | + | chr4.3:88680442-88680461 | None:intergenic | 45.0% | |
| TGGAAATCATGTGCTCTGCT+TGG | - | chr4.3:88680356-88680375 | MS.gene000604:intron | 45.0% | |
| TGTTTGAATAAAGGGCAGCC+CGG | + | chr4.3:88678758-88678777 | None:intergenic | 45.0% | |
| TTCCCAATAATCAGGGGTCA+TGG | - | chr4.3:88679475-88679494 | MS.gene000604:intron | 45.0% | |
| TTGCAGCCTACTGACAAGTT+CGG | - | chr4.3:88680130-88680149 | MS.gene000604:intron | 45.0% | |
| ! | CTTGTTGTCACGTGACTGAA+AGG | - | chr4.3:88678655-88678674 | MS.gene000604:intron | 45.0% |
| ! | TTCGGTTCATTTGTGGTGGA+TGG | - | chr4.3:88680148-88680167 | MS.gene000604:intron | 45.0% |
| AAGGTAACGAGGTCAAGTCC+TGG | - | chr4.3:88678674-88678693 | MS.gene000604:intron | 50.0% | |
| AATCATGTGCTCTGCTTGGC+CGG | - | chr4.3:88680360-88680379 | MS.gene000604:intron | 50.0% | |
| CACGTGACTGAAAGGTAACG+AGG | - | chr4.3:88678663-88678682 | MS.gene000604:intron | 50.0% | |
| CAGCCATGACCCCTGATTAT+TGG | + | chr4.3:88679481-88679500 | None:intergenic | 50.0% | |
| CTCAAAGTCAGGACCAGCAT+AGG | + | chr4.3:88680443-88680462 | None:intergenic | 50.0% | |
| GGAACTGGATGATGAGTTGC+AGG | - | chr4.3:88680713-88680732 | MS.gene000604:CDS | 50.0% | |
| TCCGAAAAAAAGCGGTGGTG+TGG | - | chr4.3:88680264-88680283 | MS.gene000604:intron | 50.0% | |
| !!! | GCCACACCACCGCTTTTTTT+CGG | + | chr4.3:88680268-88680287 | None:intergenic | 50.0% |
| ATGACAGCTGAGCCCTATGC+TGG | - | chr4.3:88680427-88680446 | MS.gene000604:intron | 55.0% | |
| CAAGGGAGATGGTCATGTGC+TGG | - | chr4.3:88680336-88680355 | MS.gene000604:intron | 55.0% | |
| CAGCACATGACCATCTCCCT+TGG | + | chr4.3:88680338-88680357 | None:intergenic | 55.0% | |
| CCTGCTCCGAAAAAAAGCGG+TGG | - | chr4.3:88680259-88680278 | MS.gene000604:intron | 55.0% | |
| TAATCCATCGCTCACCGGGT+CGG | + | chr4.3:88680174-88680193 | None:intergenic | 55.0% | |
| !!! | CCACCGCTTTTTTTCGGAGC+AGG | + | chr4.3:88680262-88680281 | None:intergenic | 55.0% |
| !! | TTTGTGGTGGATGGCCGACC+CGG | - | chr4.3:88680157-88680176 | MS.gene000604:intron | 60.0% |
| GGGCAGCCCGGTGCACTAAT+TGG | + | chr4.3:88678746-88678765 | None:intergenic | 65.0% | |
| ATGGCCGACCCGGTGAGCGA+TGG | - | chr4.3:88680167-88680186 | MS.gene000604:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 88677471 | 88680875 | 88677471 | ID=MS.gene000604 |
| chr4.3 | mRNA | 88677471 | 88680875 | 88677471 | ID=MS.gene000604.t1;Parent=MS.gene000604 |
| chr4.3 | exon | 88680660 | 88680875 | 88680660 | ID=MS.gene000604.t1.exon1;Parent=MS.gene000604.t1 |
| chr4.3 | CDS | 88680660 | 88680875 | 88680660 | ID=cds.MS.gene000604.t1;Parent=MS.gene000604.t1 |
| chr4.3 | exon | 88677885 | 88678210 | 88677885 | ID=MS.gene000604.t1.exon2;Parent=MS.gene000604.t1 |
| chr4.3 | CDS | 88677885 | 88678210 | 88677885 | ID=cds.MS.gene000604.t1;Parent=MS.gene000604.t1 |
| chr4.3 | exon | 88677471 | 88677633 | 88677471 | ID=MS.gene000604.t1.exon3;Parent=MS.gene000604.t1 |
| chr4.3 | CDS | 88677471 | 88677633 | 88677471 | ID=cds.MS.gene000604.t1;Parent=MS.gene000604.t1 |
| Gene Sequence |
| Protein sequence |
