Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055201.t1 | XP_013448969.1 | 91.6 | 203 | 14 | 2 | 1 | 201 | 1 | 202 | 2.70E-94 | 354.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055201.t1 | Q8W487 | 34.3 | 198 | 124 | 4 | 4 | 200 | 5 | 197 | 1.4e-19 | 97.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055201.t1 | I3SR78 | 91.6 | 203 | 14 | 2 | 1 | 201 | 1 | 202 | 2.0e-94 | 354.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055201 | MS.gene066160 | 0.826631 | 2.44E-54 | -1.69E-46 |
| MS.gene055201 | MS.gene37937 | 0.823272 | 1.51E-53 | -1.69E-46 |
| MS.gene055201 | MS.gene40560 | 0.819514 | 1.12E-52 | -1.69E-46 |
| MS.gene055201 | MS.gene81341 | 0.83264 | 8.43E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene055201 | MS.gene29524 | PPI |
| MS.gene055201 | MS.gene39294 | PPI |
| MS.gene055201 | MS.gene29523 | PPI |
| MS.gene055201 | MS.gene45646 | PPI |
| MS.gene50126 | MS.gene055201 | PPI |
| MS.gene055201 | MS.gene59232 | PPI |
| MS.gene32510 | MS.gene055201 | PPI |
| MS.gene055201 | MS.gene09845 | PPI |
| MS.gene055201 | MS.gene022752 | PPI |
| MS.gene055201 | MS.gene50127 | PPI |
| MS.gene055201 | MS.gene29526 | PPI |
| MS.gene055201 | MS.gene32509 | PPI |
| MS.gene055201 | MS.gene50125 | PPI |
| MS.gene055201 | MS.gene79893 | PPI |
| MS.gene29525 | MS.gene055201 | PPI |
| MS.gene055201 | MS.gene64512 | PPI |
| MS.gene055201 | MS.gene020215 | PPI |
| MS.gene055201 | MS.gene77531 | PPI |
| MS.gene32507 | MS.gene055201 | PPI |
| MS.gene055201 | MS.gene32508 | PPI |
| MS.gene055201 | MS.gene59233 | PPI |
| MS.gene055201 | MS.gene29527 | PPI |
| MS.gene055201 | MS.gene75670 | PPI |
| MS.gene055201 | MS.gene045358 | PPI |
| MS.gene055201 | MS.gene018553 | PPI |
| MS.gene055201 | MS.gene061905 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055201.t1 | MTR_7g063520 | 91.626 | 203 | 14 | 2 | 1 | 201 | 1 | 202 | 1.34e-126 | 357 |
| MS.gene055201.t1 | MTR_5g080880 | 40.201 | 199 | 97 | 5 | 20 | 200 | 8 | 202 | 3.39e-37 | 132 |
| MS.gene055201.t1 | MTR_5g080870 | 34.591 | 159 | 97 | 4 | 31 | 188 | 16 | 168 | 1.18e-20 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055201.t1 | AT5G02050 | 41.204 | 216 | 109 | 5 | 1 | 200 | 1 | 214 | 1.08e-38 | 134 |
| MS.gene055201.t1 | AT3G55605 | 40.758 | 211 | 108 | 7 | 1 | 200 | 1 | 205 | 1.69e-34 | 123 |
| MS.gene055201.t1 | AT2G39795 | 37.438 | 203 | 118 | 6 | 1 | 200 | 1 | 197 | 3.36e-32 | 117 |
| MS.gene055201.t1 | AT5G05990 | 31.707 | 205 | 116 | 6 | 18 | 200 | 4 | 206 | 8.23e-22 | 90.1 |
| MS.gene055201.t1 | AT2G39790 | 30.055 | 183 | 118 | 4 | 1 | 183 | 1 | 173 | 8.74e-17 | 76.3 |
| MS.gene055201.t1 | AT1G15870 | 28.402 | 169 | 105 | 7 | 39 | 200 | 29 | 188 | 5.29e-11 | 60.5 |
Find 62 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTCATCCGGATTCTTTA+TGG | 0.182617 | 7.4:+40568981 | None:intergenic |
| ATGGAGTGTGTATGGAGTTT+GGG | 0.281286 | 7.4:-40569044 | MS.gene055201:CDS |
| CTCTGTTGAGGTGCCACGTT+AGG | 0.340860 | 7.4:+40569147 | None:intergenic |
| AATGGAGTGTGTATGGAGTT+TGG | 0.345306 | 7.4:-40569045 | MS.gene055201:CDS |
| CTATCAATCACAACCTCATC+AGG | 0.345649 | 7.4:+40569009 | None:intergenic |
| CTATCATTCTCATTCTTCTC+GGG | 0.360091 | 7.4:+40569108 | None:intergenic |
| GCTATCATTCTCATTCTTCT+CGG | 0.381925 | 7.4:+40569107 | None:intergenic |
| GATTGCGCTGTGGAAGGTTC+TGG | 0.386945 | 7.4:+40571439 | None:intergenic |
| CAAAGGAAATGGAGTGTGTA+TGG | 0.388939 | 7.4:-40569052 | MS.gene055201:CDS |
| AGTTGAATAGTTCTTTCTCC+AGG | 0.396432 | 7.4:+40569216 | None:intergenic |
| GAGGAGAGGGAGTGCGGCGG+CGG | 0.404148 | 7.4:+40571487 | None:intergenic |
| GTGCGGCGGCGGCGCCGCGA+CGG | 0.413744 | 7.4:+40571498 | None:intergenic |
| GGCGGCGCCGCGACGGAGAG+CGG | 0.421645 | 7.4:+40571505 | None:intergenic |
| TGAAGACCAGCTGGTATATG+AGG | 0.426221 | 7.4:-40568959 | MS.gene055201:CDS |
| CCCTCTCGTAGCTTCGCTTC+CGG | 0.450077 | 7.4:-40571374 | MS.gene055201:CDS |
| TTGAAAATAGTCACAACTAA+AGG | 0.491752 | 7.4:+40569072 | None:intergenic |
| AGCTGGTCTTCAGATTCATC+CGG | 0.494031 | 7.4:+40568970 | None:intergenic |
| TTTGAGATCGAGGACAACCC+TGG | 0.494413 | 7.4:-40569234 | MS.gene055201:CDS |
| TAGCTTGTCCATAAAGAATC+CGG | 0.497260 | 7.4:-40568989 | MS.gene055201:CDS |
| TGGAGGAAGTTGCCGCTGCA+CGG | 0.501833 | 7.4:+40571459 | None:intergenic |
| TTGCCGCTGCACGGCGAGAG+AGG | 0.509670 | 7.4:+40571468 | None:intergenic |
| GGGTTGTCCTCGATCTCAAA+AGG | 0.511746 | 7.4:+40569237 | None:intergenic |
| CGAAGGAGAGTATCATCAGC+GGG | 0.511851 | 7.4:+40571335 | None:intergenic |
| TCTGTTGAGGTGCCACGTTA+GGG | 0.512444 | 7.4:+40569148 | None:intergenic |
| GTTGAATAGTTCTTTCTCCA+GGG | 0.519495 | 7.4:+40569217 | None:intergenic |
| AGAGAGGAGAGGGAGTGCGG+CGG | 0.530798 | 7.4:+40571484 | None:intergenic |
| GAGTGGTTTCATTGTGGCGA+AGG | 0.535144 | 7.4:+40571405 | None:intergenic |
| GGTGACTGCTTTCCCTGATG+AGG | 0.538518 | 7.4:-40569022 | MS.gene055201:CDS |
| ACCTCAACAGAGTGAGGATG+AGG | 0.540010 | 7.4:-40569136 | MS.gene055201:CDS |
| CTGCACGGCGAGAGAGGAGA+GGG | 0.542154 | 7.4:+40571474 | None:intergenic |
| ATTGTGGCGAAGGAGGTTAA+CGG | 0.544318 | 7.4:+40571415 | None:intergenic |
| TGAAATCGACTGTGCTCTTG+AGG | 0.545067 | 7.4:-40571300 | MS.gene055201:CDS |
| GCTCTTGAGGATAATAATGA+AGG | 0.555442 | 7.4:-40571287 | MS.gene055201:CDS |
| GCCTCATCCTCACTCTGTTG+AGG | 0.559817 | 7.4:+40569135 | None:intergenic |
| TGGTTTCATTGTGGCGAAGG+AGG | 0.565255 | 7.4:+40571408 | None:intergenic |
| AACGGCGATTGCGCTGTGGA+AGG | 0.565623 | 7.4:+40571433 | None:intergenic |
| GATCTCAAAAGGAAAATCAC+CGG | 0.567645 | 7.4:+40569248 | None:intergenic |
| GGATGAATCTGAAGACCAGC+TGG | 0.570489 | 7.4:-40568968 | MS.gene055201:CDS |
| CAGGTCCCTCATATACCAGC+TGG | 0.571273 | 7.4:+40568953 | None:intergenic |
| GCGAGAGAGGAGAGGGAGTG+CGG | 0.575299 | 7.4:+40571481 | None:intergenic |
| TATCATTCTCATTCTTCTCG+GGG | 0.576332 | 7.4:+40569109 | None:intergenic |
| CAAAATGAGTGGTTTCATTG+TGG | 0.586542 | 7.4:+40571399 | None:intergenic |
| CACAGTCGATTTCACTGTCA+AGG | 0.589925 | 7.4:+40571309 | None:intergenic |
| CTAAATGCTTACGTGAACTC+AGG | 0.611960 | 7.4:+40568934 | None:intergenic |
| TCTCCTCTCTCGCCGTGCAG+CGG | 0.617355 | 7.4:-40571471 | MS.gene055201:CDS |
| ATCTCAAAAGGAAAATCACC+GGG | 0.618030 | 7.4:+40569249 | None:intergenic |
| TGGAGTGTGTATGGAGTTTG+GGG | 0.622811 | 7.4:-40569043 | MS.gene055201:CDS |
| TGCGCTGTGGAAGGTTCTGG+AGG | 0.628252 | 7.4:+40571442 | None:intergenic |
| GAAGACCAGCTGGTATATGA+GGG | 0.628639 | 7.4:-40568958 | MS.gene055201:CDS |
| TATCAATCACAACCTCATCA+GGG | 0.630563 | 7.4:+40569010 | None:intergenic |
| GCTGCACGGCGAGAGAGGAG+AGG | 0.631466 | 7.4:+40571473 | None:intergenic |
| TCGAAGGAGAGTATCATCAG+CGG | 0.634573 | 7.4:+40571334 | None:intergenic |
| CGTGGCACCTCAACAGAGTG+AGG | 0.643427 | 7.4:-40569142 | MS.gene055201:CDS |
| TTTCACTGTCAAGGACTCGA+AGG | 0.657777 | 7.4:+40571318 | None:intergenic |
| GCCGGAAGCGAAGCTACGAG+AGG | 0.658744 | 7.4:+40571373 | None:intergenic |
| GGTTAACGGCGATTGCGCTG+TGG | 0.671069 | 7.4:+40571429 | None:intergenic |
| ACGAGAGGGTACAAAATGAG+TGG | 0.672739 | 7.4:+40571388 | None:intergenic |
| CCGGAAGCGAAGCTACGAGA+GGG | 0.676564 | 7.4:+40571374 | None:intergenic |
| AAGGAGAGTATCATCAGCGG+GGG | 0.679029 | 7.4:+40571337 | None:intergenic |
| ATGTACACCGCTCTCCGTCG+CGG | 0.689738 | 7.4:-40571512 | MS.gene055201:CDS |
| TCAAGTTGACATCCCTAACG+TGG | 0.692064 | 7.4:-40569160 | MS.gene055201:CDS |
| GAAGGAGAGTATCATCAGCG+GGG | 0.713416 | 7.4:+40571336 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAATTTTTTATTTTTTTT+AGG | - | chr7.4:40571512-40571531 | MS.gene055201:CDS | 0.0% |
| !! | AAAAAAAACTTAAAAACAAA+TGG | + | chr7.4:40568530-40568549 | None:intergenic | 10.0% |
| !!! | AAAAAATTACGTTTGTTAAA+AGG | + | chr7.4:40568502-40568521 | None:intergenic | 15.0% |
| !!! | AGTTTCAATTTTTTTTTTGT+TGG | - | chr7.4:40568628-40568647 | MS.gene055201:intron | 15.0% |
| !!! | GTTTCAATTTTTTTTTTGTT+GGG | - | chr7.4:40568629-40568648 | MS.gene055201:intron | 15.0% |
| !! | AAAAACAAAACTTCACAAAA+GGG | + | chr7.4:40568704-40568723 | None:intergenic | 20.0% |
| !! | AAATATAAACAAAAATGGAG+TGG | + | chr7.4:40569701-40569720 | None:intergenic | 20.0% |
| !! | AACTTGGATTATTTAGATTA+TGG | - | chr7.4:40571338-40571357 | MS.gene055201:CDS | 20.0% |
| !! | AAGTTGTGAAAATTCTATAA+TGG | - | chr7.4:40568808-40568827 | MS.gene055201:intron | 20.0% |
| !! | ATAATCTAAATAATCCAAGT+TGG | + | chr7.4:40571339-40571358 | None:intergenic | 20.0% |
| !! | ATGCATTTAAACTAAAATCA+AGG | + | chr7.4:40571150-40571169 | None:intergenic | 20.0% |
| !! | GAGTGAAATATAAACAAAAA+TGG | + | chr7.4:40569706-40569725 | None:intergenic | 20.0% |
| !! | TAAAAACAAAACTTCACAAA+AGG | + | chr7.4:40568705-40568724 | None:intergenic | 20.0% |
| !! | TAAATCCAGACTTAAAAAAT+AGG | + | chr7.4:40569744-40569763 | None:intergenic | 20.0% |
| !! | TGCATTTAAACTAAAATCAA+GGG | + | chr7.4:40571149-40571168 | None:intergenic | 20.0% |
| !!! | ACAAATAGAATCAATTTTCA+TGG | - | chr7.4:40571473-40571492 | MS.gene055201:CDS | 20.0% |
| !!! | AGTTTTATACTTGTAAACAT+GGG | + | chr7.4:40571407-40571426 | None:intergenic | 20.0% |
| !!! | GCTAATAATTTTTGAAAACT+TGG | - | chr7.4:40571209-40571228 | MS.gene055201:intron | 20.0% |
| !!! | TAGTTTTATACTTGTAAACA+TGG | + | chr7.4:40571408-40571427 | None:intergenic | 20.0% |
| !!! | TCATTTTCTCAAAATATTAC+TGG | - | chr7.4:40569029-40569048 | MS.gene055201:CDS | 20.0% |
| !!! | TGAAGTTTTGTTTTTATTAG+TGG | - | chr7.4:40568709-40568728 | MS.gene055201:intron | 20.0% |
| !!! | TTCATCCAATATCATTTTTT+CGG | + | chr7.4:40569354-40569373 | None:intergenic | 20.0% |
| !!! | TTTAGTTGATGTAAATAAAG+TGG | - | chr7.4:40569408-40569427 | MS.gene055201:intron | 20.0% |
| ! | AAAACAAAACTTCACAAAAG+GGG | + | chr7.4:40568703-40568722 | None:intergenic | 25.0% |
| ! | AAATAGGTCATTGAAACATA+CGG | + | chr7.4:40569728-40569747 | None:intergenic | 25.0% |
| ! | AAGAGATATTCAAATCTACA+AGG | + | chr7.4:40570121-40570140 | None:intergenic | 25.0% |
| ! | AATGAGCAATTTACATCTAA+TGG | + | chr7.4:40569888-40569907 | None:intergenic | 25.0% |
| ! | ACATACTCATCTACTTTAAA+AGG | + | chr7.4:40571382-40571401 | None:intergenic | 25.0% |
| ! | ATGAGCAATTTACATCTAAT+GGG | + | chr7.4:40569887-40569906 | None:intergenic | 25.0% |
| ! | GGATCTTAATAGAATGATAA+GGG | - | chr7.4:40568730-40568749 | MS.gene055201:intron | 25.0% |
| ! | TGGATCTTAATAGAATGATA+AGG | - | chr7.4:40568729-40568748 | MS.gene055201:intron | 25.0% |
| ! | TTGAAAATAGTCACAACTAA+AGG | + | chr7.4:40570694-40570713 | None:intergenic | 25.0% |
| !! | AGAATGATAAGGGTTTTTAT+AGG | - | chr7.4:40568740-40568759 | MS.gene055201:intron | 25.0% |
| !! | AGTGTCAATAATATTTCTAC+CGG | - | chr7.4:40569582-40569601 | MS.gene055201:intron | 25.0% |
| !! | ATTTACATCTAATGGGTAAA+AGG | + | chr7.4:40569880-40569899 | None:intergenic | 25.0% |
| !! | CATGTTCTGAACATTATTAT+TGG | - | chr7.4:40568954-40568973 | MS.gene055201:CDS | 25.0% |
| !! | GAATGATAAGGGTTTTTATA+GGG | - | chr7.4:40568741-40568760 | MS.gene055201:intron | 25.0% |
| !! | TAGAATTTTCACAACTTACA+AGG | + | chr7.4:40568805-40568824 | None:intergenic | 25.0% |
| !! | TTAGTTGTGACTATTTTCAA+AGG | - | chr7.4:40570694-40570713 | MS.gene055201:intron | 25.0% |
| !!! | AAACCTTTTTTTTAGTCTGA+AGG | - | chr7.4:40570149-40570168 | MS.gene055201:intron | 25.0% |
| !!! | AATGACCTATTTTTTAAGTC+TGG | - | chr7.4:40569736-40569755 | MS.gene055201:intron | 25.0% |
| AAAGACAACAAGGAATACTT+GGG | - | chr7.4:40571025-40571044 | MS.gene055201:intron | 30.0% | |
| AAATACAAGAGTCTCTAGAT+AGG | - | chr7.4:40571275-40571294 | MS.gene055201:CDS | 30.0% | |
| CAACCTTCAGACTAAAAAAA+AGG | + | chr7.4:40570155-40570174 | None:intergenic | 30.0% | |
| CATGTATTCCTGTAAAAAGT+TGG | + | chr7.4:40570999-40571018 | None:intergenic | 30.0% | |
| GACTCTTGTATTTGATTGAA+AGG | + | chr7.4:40571268-40571287 | None:intergenic | 30.0% | |
| GTAGCAAATCAAAGAATCTT+TGG | + | chr7.4:40570083-40570102 | None:intergenic | 30.0% | |
| TAATCCTTCGATCATAATAC+AGG | + | chr7.4:40571180-40571199 | None:intergenic | 30.0% | |
| TGTAGCAGAATTTGAACTTT+CGG | + | chr7.4:40569287-40569306 | None:intergenic | 30.0% | |
| TTACAAGGAAATGGAACAAA+GGG | + | chr7.4:40568790-40568809 | None:intergenic | 30.0% | |
| TTCCACCGAAAAAATGATAT+TGG | - | chr7.4:40569346-40569365 | MS.gene055201:intron | 30.0% | |
| TTTCACAACTTACAAGGAAA+TGG | + | chr7.4:40568799-40568818 | None:intergenic | 30.0% | |
| ! | AAGATTTGTCTTTTGTAGTC+TGG | - | chr7.4:40569509-40569528 | MS.gene055201:intron | 30.0% |
| ! | AGATTTGTCTTTTGTAGTCT+GGG | - | chr7.4:40569510-40569529 | MS.gene055201:intron | 30.0% |
| ! | AGTCAAGTTAAAGCATGTTT+TGG | + | chr7.4:40569846-40569865 | None:intergenic | 30.0% |
| ! | GTGACTATTTTCAAAGGAAA+TGG | - | chr7.4:40570700-40570719 | MS.gene055201:intron | 30.0% |
| ! | TCAAATGTTGTTTATTGCTC+TGG | - | chr7.4:40569907-40569926 | MS.gene055201:intron | 30.0% |
| ! | TGTAAAAAGTTGGTTGTGTT+GGG | + | chr7.4:40570989-40571008 | None:intergenic | 30.0% |
| !! | AAAACATGCTTTAACTTGAC+TGG | - | chr7.4:40569845-40569864 | MS.gene055201:intron | 30.0% |
| !! | GGATTTATTTTTCTCTGTCT+TGG | - | chr7.4:40569757-40569776 | MS.gene055201:intron | 30.0% |
| !! | TCTAAATAATCCAAGTTGGT+TGG | + | chr7.4:40571335-40571354 | None:intergenic | 30.0% |
| !! | TGTTCATTTTTACAGCGATT+TGG | - | chr7.4:40570910-40570929 | MS.gene055201:intron | 30.0% |
| !!! | ATCCAATATCATTTTTTCGG+TGG | + | chr7.4:40569351-40569370 | None:intergenic | 30.0% |
| AAGACAACAAGGAATACTTG+GGG | - | chr7.4:40571026-40571045 | MS.gene055201:intron | 35.0% | |
| ACACTGTAGTGTTATATCAC+TGG | - | chr7.4:40569220-40569239 | MS.gene055201:CDS | 35.0% | |
| ACACTTCAGATCAAATCCTA+AGG | - | chr7.4:40568860-40568879 | MS.gene055201:intron | 35.0% | |
| AGATTCATCCGGATTCTTTA+TGG | + | chr7.4:40570785-40570804 | None:intergenic | 35.0% | |
| AGTTGAATAGTTCTTTCTCC+AGG | + | chr7.4:40570550-40570569 | None:intergenic | 35.0% | |
| ATATACTGATGATTGGCACT+AGG | - | chr7.4:40570296-40570315 | MS.gene055201:intron | 35.0% | |
| ATCTCAAAAGGAAAATCACC+GGG | + | chr7.4:40570517-40570536 | None:intergenic | 35.0% | |
| CAAAATGAGTGGTTTCATTG+TGG | + | chr7.4:40568367-40568386 | None:intergenic | 35.0% | |
| CAAAGACAACAAGGAATACT+TGG | - | chr7.4:40571024-40571043 | MS.gene055201:intron | 35.0% | |
| CAATTGTGTTGTGTGTATGT+GGG | - | chr7.4:40569446-40569465 | MS.gene055201:intron | 35.0% | |
| CATGTGCAAAACTATGATAC+CGG | + | chr7.4:40569604-40569623 | None:intergenic | 35.0% | |
| CATGTTCAACAAAGACAACA+AGG | - | chr7.4:40571015-40571034 | MS.gene055201:intron | 35.0% | |
| CATTATCTGCAGATTATCTG+TGG | - | chr7.4:40570210-40570229 | MS.gene055201:intron | 35.0% | |
| CTATCATTCTCATTCTTCTC+GGG | + | chr7.4:40570658-40570677 | None:intergenic | 35.0% | |
| CTTACAAGGAAATGGAACAA+AGG | + | chr7.4:40568791-40568810 | None:intergenic | 35.0% | |
| GAGTGTCATATACTGATGAT+TGG | - | chr7.4:40570289-40570308 | MS.gene055201:intron | 35.0% | |
| GATCTCAAAAGGAAAATCAC+CGG | + | chr7.4:40570518-40570537 | None:intergenic | 35.0% | |
| GCTATCATTCTCATTCTTCT+CGG | + | chr7.4:40570659-40570678 | None:intergenic | 35.0% | |
| GCTCTTGAGGATAATAATGA+AGG | - | chr7.4:40568476-40568495 | MS.gene055201:intron | 35.0% | |
| GTTGAATAGTTCTTTCTCCA+GGG | + | chr7.4:40570549-40570568 | None:intergenic | 35.0% | |
| TATAGGGTTGTTAGTGTTTG+TGG | - | chr7.4:40568757-40568776 | MS.gene055201:intron | 35.0% | |
| TATCAATCACAACCTCATCA+GGG | + | chr7.4:40570756-40570775 | None:intergenic | 35.0% | |
| TATCATTCTCATTCTTCTCG+GGG | + | chr7.4:40570657-40570676 | None:intergenic | 35.0% | |
| TATGATCGAAGGATTACTTG+AGG | - | chr7.4:40571184-40571203 | MS.gene055201:intron | 35.0% | |
| TCAATGTGTCAGTACTTCAT+AGG | - | chr7.4:40568979-40568998 | MS.gene055201:CDS | 35.0% | |
| TCAATTGTGTTGTGTGTATG+TGG | - | chr7.4:40569445-40569464 | MS.gene055201:intron | 35.0% | |
| TCTGTGGTATAAGAAAATGC+AGG | - | chr7.4:40570226-40570245 | MS.gene055201:intron | 35.0% | |
| TGTTAGTGTCAGTACTTCAT+AGG | - | chr7.4:40569060-40569079 | MS.gene055201:CDS | 35.0% | |
| TTGTTTATTGCTCTGGTTGA+GGG | - | chr7.4:40569914-40569933 | MS.gene055201:intron | 35.0% | |
| ! | CAACACAACCAACTTTTTAC+AGG | - | chr7.4:40570988-40571007 | MS.gene055201:intron | 35.0% |
| ! | CTGTAAAAAGTTGGTTGTGT+TGG | + | chr7.4:40570990-40571009 | None:intergenic | 35.0% |
| ! | CTTTTACTTTCCAACCAACT+TGG | - | chr7.4:40571322-40571341 | MS.gene055201:CDS | 35.0% |
| ! | GTCTTCTTTTGCTACTCATT+TGG | - | chr7.4:40569539-40569558 | MS.gene055201:intron | 35.0% |
| ! | TAGCTTGTCCATAAAGAATC+CGG | - | chr7.4:40570774-40570793 | MS.gene055201:intron | 35.0% |
| ! | TAGGATTTGATCTGAAGTGT+GGG | + | chr7.4:40568860-40568879 | None:intergenic | 35.0% |
| ! | TTAGGATTTGATCTGAAGTG+TGG | + | chr7.4:40568861-40568880 | None:intergenic | 35.0% |
| !! | TACAGAGTGTTGTCAAATAG+TGG | + | chr7.4:40569155-40569174 | None:intergenic | 35.0% |
| !! | TGGTGTTATGTTTGGTATCA+TGG | - | chr7.4:40569955-40569974 | MS.gene055201:intron | 35.0% |
| !!! | TGATTTTCCTTTTGAGATCG+AGG | - | chr7.4:40570519-40570538 | MS.gene055201:intron | 35.0% |
| AATGGAGTGTGTATGGAGTT+TGG | - | chr7.4:40570718-40570737 | MS.gene055201:intron | 40.0% | |
| AGCAGAATTTGAACTTTCGG+TGG | + | chr7.4:40569284-40569303 | None:intergenic | 40.0% | |
| ATCAAATCCTAAGGTGTGTC+CGG | - | chr7.4:40568869-40568888 | MS.gene055201:intron | 40.0% | |
| ATGGAGTGTGTATGGAGTTT+GGG | - | chr7.4:40570719-40570738 | MS.gene055201:intron | 40.0% | |
| ATTGTGGGACAGATCTACAA+GGG | + | chr7.4:40570364-40570383 | None:intergenic | 40.0% | |
| CAAAGAATCTTTGGCATCAC+TGG | + | chr7.4:40570074-40570093 | None:intergenic | 40.0% | |
| CAAAGGAAATGGAGTGTGTA+TGG | - | chr7.4:40570711-40570730 | MS.gene055201:intron | 40.0% | |
| CAAGCAGTGTTGTCAAATGT+CGG | + | chr7.4:40569251-40569270 | None:intergenic | 40.0% | |
| CAATGACACATGTCAGATAC+CGG | + | chr7.4:40568891-40568910 | None:intergenic | 40.0% | |
| CTAAATGCTTACGTGAACTC+AGG | + | chr7.4:40570832-40570851 | None:intergenic | 40.0% | |
| CTATCAATCACAACCTCATC+AGG | + | chr7.4:40570757-40570776 | None:intergenic | 40.0% | |
| CTGTCCTGTATTATGATCGA+AGG | - | chr7.4:40571173-40571192 | MS.gene055201:intron | 40.0% | |
| GCAAAGGCTCAAAATCATAG+TGG | + | chr7.4:40570017-40570036 | None:intergenic | 40.0% | |
| GTTGTTTATTGCTCTGGTTG+AGG | - | chr7.4:40569913-40569932 | MS.gene055201:intron | 40.0% | |
| TACTCGTGTTGTCAATGGAT+CGG | - | chr7.4:40569084-40569103 | MS.gene055201:CDS | 40.0% | |
| TAGGTTACTCGTGTTGTCAA+TGG | - | chr7.4:40569079-40569098 | MS.gene055201:CDS | 40.0% | |
| TATGTTTGGTATCATGGTGC+TGG | - | chr7.4:40569961-40569980 | MS.gene055201:intron | 40.0% | |
| TTGTAGATCTGTCCCACAAT+CGG | - | chr7.4:40570364-40570383 | MS.gene055201:intron | 40.0% | |
| TTTGGATGAAAACCTGCAGA+AGG | - | chr7.4:40570928-40570947 | MS.gene055201:intron | 40.0% | |
| ! | CTTTTCCAGCTTGAATTTCC+CGG | - | chr7.4:40570496-40570515 | MS.gene055201:intron | 40.0% |
| ! | GCTTTGAGCTACATTCAAAG+TGG | + | chr7.4:40569383-40569402 | None:intergenic | 40.0% |
| AATCACCGGGAAATTCAAGC+TGG | + | chr7.4:40570504-40570523 | None:intergenic | 45.0% | |
| ACAACAAGGAATACTTGGGG+TGG | - | chr7.4:40571029-40571048 | MS.gene055201:intron | 45.0% | |
| ACTCGTGTTGTCAATGGATC+GGG | - | chr7.4:40569085-40569104 | MS.gene055201:CDS | 45.0% | |
| ACTTGAGAAAAGCCTTCTGC+AGG | + | chr7.4:40570943-40570962 | None:intergenic | 45.0% | |
| ATTGTGGCGAAGGAGGTTAA+CGG | + | chr7.4:40568351-40568370 | None:intergenic | 45.0% | |
| CACATGTGTCAGTGTAGTGT+CGG | + | chr7.4:40568917-40568936 | None:intergenic | 45.0% | |
| CCCTGAAAAAGACCGATTGT+GGG | + | chr7.4:40570379-40570398 | None:intergenic | 45.0% | |
| GAACAACGACAGCAGTTATG+AGG | + | chr7.4:40569632-40569651 | None:intergenic | 45.0% | |
| GAAGACCAGCTGGTATATGA+GGG | - | chr7.4:40570805-40570824 | MS.gene055201:intron | 45.0% | |
| GATTGTGGGACAGATCTACA+AGG | + | chr7.4:40570365-40570384 | None:intergenic | 45.0% | |
| TCAAGTATCTCGAGATCCGA+GGG | - | chr7.4:40570957-40570976 | MS.gene055201:intron | 45.0% | |
| TCTTGCGCTGTTACTAGTTC+AGG | + | chr7.4:40569493-40569512 | None:intergenic | 45.0% | |
| TGAAATCGACTGTGCTCTTG+AGG | - | chr7.4:40568463-40568482 | MS.gene055201:intron | 45.0% | |
| TGAAGACCAGCTGGTATATG+AGG | - | chr7.4:40570804-40570823 | MS.gene055201:intron | 45.0% | |
| TGGAGTGTGTATGGAGTTTG+GGG | - | chr7.4:40570720-40570739 | MS.gene055201:intron | 45.0% | |
| TTTCACTGTCAAGGACTCGA+AGG | + | chr7.4:40568448-40568467 | None:intergenic | 45.0% | |
| ! | ACGAGAGGGTACAAAATGAG+TGG | + | chr7.4:40568378-40568397 | None:intergenic | 45.0% |
| ! | CACAGTCGATTTCACTGTCA+AGG | + | chr7.4:40568457-40568476 | None:intergenic | 45.0% |
| ! | CTGGTTGAGGGTTTGTTTCA+AGG | - | chr7.4:40569926-40569945 | MS.gene055201:intron | 45.0% |
| ! | GGTTTGTTTCAAGGTCAGTC+TGG | - | chr7.4:40569935-40569954 | MS.gene055201:intron | 45.0% |
| ! | TCCCACAATCGGTCTTTTTC+AGG | - | chr7.4:40570375-40570394 | MS.gene055201:intron | 45.0% |
| ! | TTGTGTTGGGTGTTATCCCT+CGG | + | chr7.4:40570976-40570995 | None:intergenic | 45.0% |
| !! | AGCTGGTCTTCAGATTCATC+CGG | + | chr7.4:40570796-40570815 | None:intergenic | 45.0% |
| !! | CCCACAATCGGTCTTTTTCA+GGG | - | chr7.4:40570376-40570395 | MS.gene055201:intron | 45.0% |
| !! | GGTCAGTCTGGTGTTATGTT+TGG | - | chr7.4:40569947-40569966 | MS.gene055201:intron | 45.0% |
| !! | TCAAGTTGACATCCCTAACG+TGG | - | chr7.4:40570603-40570622 | MS.gene055201:intron | 45.0% |
| !! | TCGAAGGAGAGTATCATCAG+CGG | + | chr7.4:40568432-40568451 | None:intergenic | 45.0% |
| !!! | CCACAATCGGTCTTTTTCAG+GGG | - | chr7.4:40570377-40570396 | MS.gene055201:intron | 45.0% |
| AAAACCACAGTGGCTCACTG+TGG | - | chr7.4:40570037-40570056 | MS.gene055201:intron | 50.0% | |
| ACAGTGGCTCACTGTGGTTT+GGG | - | chr7.4:40570043-40570062 | MS.gene055201:intron | 50.0% | |
| ACCTCAACAGAGTGAGGATG+AGG | - | chr7.4:40570627-40570646 | MS.gene055201:intron | 50.0% | |
| CCCCTGAAAAAGACCGATTG+TGG | + | chr7.4:40570380-40570399 | None:intergenic | 50.0% | |
| CTCAAGTATCTCGAGATCCG+AGG | - | chr7.4:40570956-40570975 | MS.gene055201:intron | 50.0% | |
| CTCGTGTTGTCAATGGATCG+GGG | - | chr7.4:40569086-40569105 | MS.gene055201:CDS | 50.0% | |
| GAGCCTTTGCAAAACCACAG+TGG | - | chr7.4:40570027-40570046 | MS.gene055201:intron | 50.0% | |
| GAGTGGTTTCATTGTGGCGA+AGG | + | chr7.4:40568361-40568380 | None:intergenic | 50.0% | |
| GGATGAATCTGAAGACCAGC+TGG | - | chr7.4:40570795-40570814 | MS.gene055201:intron | 50.0% | |
| GGGTTGTCCTCGATCTCAAA+AGG | + | chr7.4:40570529-40570548 | None:intergenic | 50.0% | |
| TCAGATACCGGACACACCTT+AGG | + | chr7.4:40568879-40568898 | None:intergenic | 50.0% | |
| TCATAGTGGCTCCGTGCTTT+CGG | + | chr7.4:40570003-40570022 | None:intergenic | 50.0% | |
| TGGTTTCATTGTGGCGAAGG+AGG | + | chr7.4:40568358-40568377 | None:intergenic | 50.0% | |
| ! | AGTATCATCAGCGGGGGTTT+TGG | + | chr7.4:40568423-40568442 | None:intergenic | 50.0% |
| ! | GTTTGGTATCATGGTGCTGG+TGG | - | chr7.4:40569964-40569983 | MS.gene055201:intron | 50.0% |
| ! | TCTGTTGAGGTGCCACGTTA+GGG | + | chr7.4:40570618-40570637 | None:intergenic | 50.0% |
| ! | TTTGAGATCGAGGACAACCC+TGG | - | chr7.4:40570529-40570548 | MS.gene055201:intron | 50.0% |
| !! | AAGGAGAGTATCATCAGCGG+GGG | + | chr7.4:40568429-40568448 | None:intergenic | 50.0% |
| !! | CGAAGGAGAGTATCATCAGC+GGG | + | chr7.4:40568431-40568450 | None:intergenic | 50.0% |
| !! | GAAGGAGAGTATCATCAGCG+GGG | + | chr7.4:40568430-40568449 | None:intergenic | 50.0% |
| !! | GAGCCACTGTGGTTTTGCAA+AGG | + | chr7.4:40570033-40570052 | None:intergenic | 50.0% |
| !!! | ATCGGTCTTTTTCAGGGGTC+AGG | - | chr7.4:40570382-40570401 | MS.gene055201:intron | 50.0% |
| CAAACCACAGTGAGCCACTG+TGG | + | chr7.4:40570044-40570063 | None:intergenic | 55.0% | |
| CACAGTGGCTCACTGTGGTT+TGG | - | chr7.4:40570042-40570061 | MS.gene055201:intron | 55.0% | |
| CAGGTCCCTCATATACCAGC+TGG | + | chr7.4:40570813-40570832 | None:intergenic | 55.0% | |
| GATTGCGCTGTGGAAGGTTC+TGG | + | chr7.4:40568327-40568346 | None:intergenic | 55.0% | |
| GCCTCATCCTCACTCTGTTG+AGG | + | chr7.4:40570631-40570650 | None:intergenic | 55.0% | |
| GGGTGCTAGTGCTACAGAGT+CGG | + | chr7.4:40568840-40568859 | None:intergenic | 55.0% | |
| GGTGACTGCTTTCCCTGATG+AGG | - | chr7.4:40570741-40570760 | MS.gene055201:intron | 55.0% | |
| TAGTGGCGCTGTAGCACTGT+AGG | + | chr7.4:40569138-40569157 | None:intergenic | 55.0% | |
| TTGCGCCTTTGCCGAAAGCA+CGG | - | chr7.4:40569989-40570008 | MS.gene055201:intron | 55.0% | |
| ! | CTCTGTTGAGGTGCCACGTT+AGG | + | chr7.4:40570619-40570638 | None:intergenic | 55.0% |
| !!! | GGGGGTTTTGGCTAAAACGC+CGG | + | chr7.4:40568411-40568430 | None:intergenic | 55.0% |
| AACGGCGATTGCGCTGTGGA+AGG | + | chr7.4:40568333-40568352 | None:intergenic | 60.0% | |
| ATGTACACCGCTCTCCGTCG+CGG | - | chr7.4:40568251-40568270 | MS.gene055201:intron | 60.0% | |
| CCCTCTCGTAGCTTCGCTTC+CGG | - | chr7.4:40568389-40568408 | MS.gene055201:intron | 60.0% | |
| CCGGAAGCGAAGCTACGAGA+GGG | + | chr7.4:40568392-40568411 | None:intergenic | 60.0% | |
| CGTGGCACCTCAACAGAGTG+AGG | - | chr7.4:40570621-40570640 | MS.gene055201:intron | 60.0% | |
| GGTTAACGGCGATTGCGCTG+TGG | + | chr7.4:40568337-40568356 | None:intergenic | 60.0% | |
| TGGAGGAAGTTGCCGCTGCA+CGG | + | chr7.4:40568307-40568326 | None:intergenic | 60.0% | |
| TGGCTCCGTGCTTTCGGCAA+AGG | + | chr7.4:40569997-40570016 | None:intergenic | 60.0% | |
| ! | TGCGCTGTGGAAGGTTCTGG+AGG | + | chr7.4:40568324-40568343 | None:intergenic | 60.0% |
| CTGCACGGCGAGAGAGGAGA+GGG | + | chr7.4:40568292-40568311 | None:intergenic | 65.0% | |
| GCCGGAAGCGAAGCTACGAG+AGG | + | chr7.4:40568393-40568412 | None:intergenic | 65.0% | |
| GCGAGAGAGGAGAGGGAGTG+CGG | + | chr7.4:40568285-40568304 | None:intergenic | 65.0% | |
| TCTCCTCTCTCGCCGTGCAG+CGG | - | chr7.4:40568292-40568311 | MS.gene055201:intron | 65.0% | |
| ! | AGAGAGGAGAGGGAGTGCGG+CGG | + | chr7.4:40568282-40568301 | None:intergenic | 65.0% |
| GCTGCACGGCGAGAGAGGAG+AGG | + | chr7.4:40568293-40568312 | None:intergenic | 70.0% | |
| TTGCCGCTGCACGGCGAGAG+AGG | + | chr7.4:40568298-40568317 | None:intergenic | 70.0% | |
| ! | GAGGAGAGGGAGTGCGGCGG+CGG | + | chr7.4:40568279-40568298 | None:intergenic | 75.0% |
| ! | GGCGGCGCCGCGACGGAGAG+CGG | + | chr7.4:40568261-40568280 | None:intergenic | 85.0% |
| ! | GTGCGGCGGCGGCGCCGCGA+CGG | + | chr7.4:40568268-40568287 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 40568245 | 40571540 | 40568245 | ID=MS.gene055201 |
| chr7.4 | mRNA | 40568245 | 40571540 | 40568245 | ID=MS.gene055201.t1;Parent=MS.gene055201 |
| chr7.4 | exon | 40571274 | 40571540 | 40571274 | ID=MS.gene055201.t1.exon1;Parent=MS.gene055201.t1 |
| chr7.4 | CDS | 40571274 | 40571540 | 40571274 | ID=cds.MS.gene055201.t1;Parent=MS.gene055201.t1 |
| chr7.4 | exon | 40568946 | 40569280 | 40568946 | ID=MS.gene055201.t1.exon2;Parent=MS.gene055201.t1 |
| chr7.4 | CDS | 40568946 | 40569280 | 40568946 | ID=cds.MS.gene055201.t1;Parent=MS.gene055201.t1 |
| chr7.4 | exon | 40568245 | 40568251 | 40568245 | ID=MS.gene055201.t1.exon3;Parent=MS.gene055201.t1 |
| chr7.4 | CDS | 40568245 | 40568251 | 40568245 | ID=cds.MS.gene055201.t1;Parent=MS.gene055201.t1 |
| Gene Sequence |
| Protein sequence |
