AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46105

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46105.t1 MTR_7g063520 92.157 204 12 3 1 202 1 202 2.09e-124 352
MS.gene46105.t1 MTR_5g080880 39.500 200 98 6 20 201 8 202 5.46e-35 126
MS.gene46105.t1 MTR_5g080870 33.750 160 98 5 31 189 16 168 2.73e-18 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46105.t1 AT5G02050 42.922 219 102 7 1 201 1 214 1.21e-37 131
MS.gene46105.t1 AT3G55605 41.315 213 105 10 1 201 1 205 1.15e-34 123
MS.gene46105.t1 AT2G39795 36.765 204 119 7 1 201 1 197 4.44e-31 114
MS.gene46105.t1 AT5G05990 32.039 206 115 8 18 201 4 206 9.17e-20 84.7
MS.gene46105.t1 AT2G39790 33.155 187 112 8 1 186 1 175 5.45e-17 76.6

Find 60 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATTCATCCGGATTCTTTA+TGG 0.182617 7.2:-41298707 None:intergenic
CTCTGTTGAGGTGCCACGTT+AGG 0.340860 7.2:-41298538 None:intergenic
CTATCAATCACAACCTCATC+AGG 0.345649 7.2:-41298679 None:intergenic
ATGGAGTGTGTATGGAGTTT+GGG 0.353451 7.2:+41298644 MS.gene46105:CDS
GAGAGGGAGTGCGGCGGCGG+TGG 0.353608 7.2:-41296185 None:intergenic
AATGGAGTGTGTATGGAGTT+TGG 0.383734 7.2:+41298643 MS.gene46105:CDS
GATTGCGCTGTGGAAGGTTC+TGG 0.386945 7.2:-41296236 None:intergenic
GAGGAGAGGGAGTGCGGCGG+CGG 0.393871 7.2:-41296188 None:intergenic
AGTTGAATAGTTCTTTCTCC+AGG 0.396432 7.2:-41298469 None:intergenic
TGAAGACCAGCTGGTATATG+AGG 0.426221 7.2:+41298729 MS.gene46105:CDS
AGGAAGAAATGGAGTGTGTA+TGG 0.440228 7.2:+41298636 MS.gene46105:CDS
GTGCGGCGGCGGTGGCGCGA+CGG 0.481559 7.2:-41296177 None:intergenic
AGCTGGTCTTCAGATTCATC+CGG 0.494031 7.2:-41298718 None:intergenic
TTTGAGATCGAGGACAACCC+TGG 0.494413 7.2:+41298451 MS.gene46105:CDS
TAGCTTGTCCATAAAGAATC+CGG 0.497260 7.2:+41298699 MS.gene46105:CDS
TTGAAAACAGTAACAACTAA+AGG 0.500026 7.2:-41298613 None:intergenic
GGCGGTGGCGCGACGGAGAG+CGG 0.500941 7.2:-41296170 None:intergenic
TGGAGGAAGTTGCCGCTGCA+CGG 0.501833 7.2:-41296216 None:intergenic
TTGCCGCTGCACGGCGAGAG+AGG 0.509670 7.2:-41296207 None:intergenic
GGGTTGTCCTCGATCTCAAA+AGG 0.511746 7.2:-41298448 None:intergenic
CGAAGGAGAGTATCATCAGC+GGG 0.511851 7.2:-41296340 None:intergenic
TCTGTTGAGGTGCCACGTTA+GGG 0.512444 7.2:-41298537 None:intergenic
GTTGAATAGTTCTTTCTCCA+GGG 0.519495 7.2:-41298468 None:intergenic
AGAGAGGAGAGGGAGTGCGG+CGG 0.530798 7.2:-41296191 None:intergenic
GAGTGGTTTCATTGTGGCGA+AGG 0.535144 7.2:-41296270 None:intergenic
GGTGACTGCTTTCCCTGATG+AGG 0.538518 7.2:+41298666 MS.gene46105:CDS
ACCTCAACAGAGTGAGGATG+AGG 0.540010 7.2:+41298549 MS.gene46105:CDS
CTGCACGGCGAGAGAGGAGA+GGG 0.542154 7.2:-41296201 None:intergenic
ATTGTGGCGAAGGAGGTTAA+CGG 0.544318 7.2:-41296260 None:intergenic
TGAAATCGACTGTGCTCTTG+AGG 0.545067 7.2:+41296375 MS.gene46105:CDS
CCCTCTCGTAGCTTCGCTTA+CGG 0.550555 7.2:+41296301 MS.gene46105:CDS
GCTCTTGAGGATAATAATGA+AGG 0.555442 7.2:+41296388 MS.gene46105:CDS
GCCTCATCCTCACTCTGTTG+AGG 0.559817 7.2:-41298550 None:intergenic
TGGTTTCATTGTGGCGAAGG+AGG 0.565255 7.2:-41296267 None:intergenic
AACGGCGATTGCGCTGTGGA+AGG 0.565623 7.2:-41296242 None:intergenic
GATCTCAAAAGGAAAATCAC+CGG 0.567645 7.2:-41298437 None:intergenic
GGATGAATCTGAAGACCAGC+TGG 0.570489 7.2:+41298720 MS.gene46105:CDS
CAGGTCCCTCATATACCAGC+TGG 0.571273 7.2:-41298735 None:intergenic
GCGAGAGAGGAGAGGGAGTG+CGG 0.575299 7.2:-41296194 None:intergenic
TATCATTCTCATTCTTCTCG+AGG 0.575639 7.2:-41298576 None:intergenic
CAAAATGAGTGGTTTCATTG+TGG 0.586542 7.2:-41296276 None:intergenic
CACAGTCGATTTCACTGTCA+AGG 0.589925 7.2:-41296366 None:intergenic
CTAAATGCTTACGTGAACTC+AGG 0.611960 7.2:-41298754 None:intergenic
TCTCCTCTCTCGCCGTGCAG+CGG 0.617355 7.2:+41296204 MS.gene46105:CDS
ATCTCAAAAGGAAAATCACC+GGG 0.618030 7.2:-41298436 None:intergenic
TGGAGTGTGTATGGAGTTTG+GGG 0.622811 7.2:+41298645 MS.gene46105:CDS
TGCGCTGTGGAAGGTTCTGG+AGG 0.628252 7.2:-41296233 None:intergenic
GAAGACCAGCTGGTATATGA+GGG 0.628639 7.2:+41298730 MS.gene46105:CDS
TATCAATCACAACCTCATCA+GGG 0.630563 7.2:-41298678 None:intergenic
GCTGCACGGCGAGAGAGGAG+AGG 0.631466 7.2:-41296202 None:intergenic
TCGAAGGAGAGTATCATCAG+CGG 0.634573 7.2:-41296341 None:intergenic
CGTGGCACCTCAACAGAGTG+AGG 0.643427 7.2:+41298543 MS.gene46105:CDS
TTTCACTGTCAAGGACTCGA+AGG 0.657777 7.2:-41296357 None:intergenic
GGTTAACGGCGATTGCGCTG+TGG 0.671069 7.2:-41296246 None:intergenic
ACGAGAGGGTACAAAATGAG+TGG 0.672739 7.2:-41296287 None:intergenic
AAGGAGAGTATCATCAGCGG+GGG 0.679029 7.2:-41296338 None:intergenic
GCCGTAAGCGAAGCTACGAG+AGG 0.685303 7.2:-41296302 None:intergenic
TCAAGTTGACATCCCTAACG+TGG 0.692064 7.2:+41298525 MS.gene46105:CDS
CCGTAAGCGAAGCTACGAGA+GGG 0.698699 7.2:-41296301 None:intergenic
GAAGGAGAGTATCATCAGCG+GGG 0.713416 7.2:-41296339 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAACTTAAAAACAA+AGG - chr7.2:41296444-41296463 None:intergenic 10.0%
!! AAAAAAAACTTAAAAACAAA+GGG - chr7.2:41296443-41296462 None:intergenic 10.0%
!!! AAAAAATTACGTTTGTTAAA+AGG - chr7.2:41296414-41296433 None:intergenic 15.0%
!!! AAGTTTCAATTTTTTTTTGT+TGG + chr7.2:41296538-41296557 MS.gene46105:intron 15.0%
!!! AGTTTCAATTTTTTTTTGTT+GGG + chr7.2:41296539-41296558 MS.gene46105:intron 15.0%
!! AAAAACAAAACTTCACAAAA+GGG - chr7.2:41296614-41296633 None:intergenic 20.0%
!! AAATAGGTCATTTAAACATA+CGG - chr7.2:41297650-41297669 None:intergenic 20.0%
!! AAATATAAACAAAAATGGAG+TGG - chr7.2:41297623-41297642 None:intergenic 20.0%
!! AAGATGTAAGAATTCTATAA+TGG + chr7.2:41296730-41296749 MS.gene46105:intron 20.0%
!! AATGAGCAATTTACATATAA+TGG - chr7.2:41297810-41297829 None:intergenic 20.0%
!! ATGAGCAATTTACATATAAT+GGG - chr7.2:41297809-41297828 None:intergenic 20.0%
!! GAGTGAAATATAAACAAAAA+TGG - chr7.2:41297628-41297647 None:intergenic 20.0%
!! TAAAAACAAAACTTCACAAA+AGG - chr7.2:41296615-41296634 None:intergenic 20.0%
!! TAAATCCAGACTTAAAAAAT+AGG - chr7.2:41297666-41297685 None:intergenic 20.0%
!!! ATTTACATATAATGGGTAAA+AGG - chr7.2:41297802-41297821 None:intergenic 20.0%
!!! TGAAGTTTTGTTTTTATTAG+TGG + chr7.2:41296619-41296638 MS.gene46105:intron 20.0%
!!! TTCATCCAATATCATTTTTT+CGG - chr7.2:41297276-41297295 None:intergenic 20.0%
!!! TTTAGTTGATGTAAATAAAG+TGG + chr7.2:41297330-41297349 MS.gene46105:intron 20.0%
! AAAACAAAACTTCACAAAAG+GGG - chr7.2:41296613-41296632 None:intergenic 25.0%
! AAAACATGCTATAACTTGAT+TGG + chr7.2:41297767-41297786 MS.gene46105:intron 25.0%
! AAGAGATATTCAAATCTACA+AGG - chr7.2:41298043-41298062 None:intergenic 25.0%
! CAACTTTCAGACTAAAAAAA+AGG - chr7.2:41298077-41298096 None:intergenic 25.0%
! GGATCTTAATAGAATGATAA+GGG + chr7.2:41296640-41296659 MS.gene46105:intron 25.0%
! TAGAATTCTTACATCTTACA+AGG - chr7.2:41296727-41296746 None:intergenic 25.0%
! TCAAATATTGTTTATTGCTC+TGG + chr7.2:41297829-41297848 MS.gene46105:intron 25.0%
! TGGATCTTAATAGAATGATA+AGG + chr7.2:41296639-41296658 MS.gene46105:intron 25.0%
! TTGAAAACAGTAACAACTAA+AGG - chr7.2:41298616-41298635 None:intergenic 25.0%
! TTGATGTAAATAAAGTGGAA+TGG + chr7.2:41297335-41297354 MS.gene46105:intron 25.0%
!! AATCAAGTTATAGCATGTTT+TGG - chr7.2:41297768-41297787 None:intergenic 25.0%
!! AGAATGATAAGGGTTTTTAT+AGG + chr7.2:41296650-41296669 MS.gene46105:intron 25.0%
!! CATGTTCTGAACATTATTAT+TGG + chr7.2:41296876-41296895 MS.gene46105:intron 25.0%
!! GAATGATAAGGGTTTTTATA+GGG + chr7.2:41296651-41296670 MS.gene46105:intron 25.0%
!! TCATTTTCTCGAAATATTAC+TGG + chr7.2:41296951-41296970 MS.gene46105:intron 25.0%
!! TTAAGTTCTTGATCTTTTAG+TGG + chr7.2:41297584-41297603 MS.gene46105:intron 25.0%
!! TTAGTTGTTACTGTTTTCAA+AGG + chr7.2:41298616-41298635 MS.gene46105:CDS 25.0%
!!! AATGACCTATTTTTTAAGTC+TGG + chr7.2:41297658-41297677 MS.gene46105:intron 25.0%
!!! TTTTTCAATTATTTGCGTGT+AGG + chr7.2:41297716-41297735 MS.gene46105:intron 25.0%
TCTTACATCTTACAAGGAAA+TGG - chr7.2:41296721-41296740 None:intergenic 30.0%
TTACAAGGAAATGGAACAAA+GGG - chr7.2:41296712-41296731 None:intergenic 30.0%
TTCCACCGAAAAAATGATAT+TGG + chr7.2:41297268-41297287 MS.gene46105:intron 30.0%
! AAGATTTGTCTTTTGTAGTC+TGG + chr7.2:41297431-41297450 MS.gene46105:intron 30.0%
! ACTGTTTTCAAAGGAAGAAA+TGG + chr7.2:41298625-41298644 MS.gene46105:CDS 30.0%
! AGATTTGTCTTTTGTAGTCT+GGG + chr7.2:41297432-41297451 MS.gene46105:intron 30.0%
! TGTAGCAGAATTTGAACTTT+TGG - chr7.2:41297209-41297228 None:intergenic 30.0%
!!! ATCCAATATCATTTTTTCGG+TGG - chr7.2:41297273-41297292 None:intergenic 30.0%
!!! GGATTTATTTTTGTCTGTCT+GGG + chr7.2:41297679-41297698 MS.gene46105:intron 30.0%
!!! TGGATTTATTTTTGTCTGTC+TGG + chr7.2:41297678-41297697 MS.gene46105:intron 30.0%
ACACTGTAGTGTTATATCAC+TGG + chr7.2:41297142-41297161 MS.gene46105:intron 35.0%
ACACTTCAGATCAAATCCTA+AGG + chr7.2:41296782-41296801 MS.gene46105:intron 35.0%
ACTTTGAGCTACATTCAAAG+TGG - chr7.2:41297305-41297324 None:intergenic 35.0%
AGATTCATCCGGATTCTTTA+TGG - chr7.2:41298710-41298729 None:intergenic 35.0%
AGTTGAATAGTTCTTTCTCC+AGG - chr7.2:41298472-41298491 None:intergenic 35.0%
ATATACTGATGATTGGCACT+AGG + chr7.2:41298218-41298237 MS.gene46105:intron 35.0%
ATCTCAAAAGGAAAATCACC+GGG - chr7.2:41298439-41298458 None:intergenic 35.0%
ATGTGTTACCTATGAAGTAC+TGG - chr7.2:41296912-41296931 None:intergenic 35.0%
ATTGTTTATTGCTCTGGTTG+AGG + chr7.2:41297835-41297854 MS.gene46105:intron 35.0%
CAAAATGAGTGGTTTCATTG+TGG - chr7.2:41296279-41296298 None:intergenic 35.0%
CAAGCAGTGTTGTCAAATAT+CGG - chr7.2:41297240-41297259 None:intergenic 35.0%
CAATTGTGTTGTGTGTATGT+GGG + chr7.2:41297368-41297387 MS.gene46105:intron 35.0%
CATGTGCAAAACTATGATAC+TGG - chr7.2:41297526-41297545 None:intergenic 35.0%
CATTATCTGCAGATTATCTG+TGG + chr7.2:41298132-41298151 MS.gene46105:intron 35.0%
CTTACAAGGAAATGGAACAA+AGG - chr7.2:41296713-41296732 None:intergenic 35.0%
GAGTGTCATATACTGATGAT+TGG + chr7.2:41298211-41298230 MS.gene46105:intron 35.0%
GATCTCAAAAGGAAAATCAC+CGG - chr7.2:41298440-41298459 None:intergenic 35.0%
GCAGCAAATCAAAGAATCTT+TGG - chr7.2:41298005-41298024 None:intergenic 35.0%
GCTCTTGAGGATAATAATGA+AGG + chr7.2:41296388-41296407 MS.gene46105:CDS 35.0%
GTTGAATAGTTCTTTCTCCA+GGG - chr7.2:41298471-41298490 None:intergenic 35.0%
TAGTTTACTCGTGTTGTCAA+TGG + chr7.2:41297001-41297020 MS.gene46105:intron 35.0%
TATCAATCACAACCTCATCA+GGG - chr7.2:41298681-41298700 None:intergenic 35.0%
TATCATTCTCATTCTTCTCG+AGG - chr7.2:41298579-41298598 None:intergenic 35.0%
TCAATTGTGTTGTGTGTATG+TGG + chr7.2:41297367-41297386 MS.gene46105:intron 35.0%
TCTGTGGTATAAGAAAATGC+AGG + chr7.2:41298148-41298167 MS.gene46105:intron 35.0%
TTATAGGGTTGTTAGTGTTG+TGG + chr7.2:41296666-41296685 MS.gene46105:intron 35.0%
TTGTTTATTGCTCTGGTTGA+GGG + chr7.2:41297836-41297855 MS.gene46105:intron 35.0%
! AGCAGAATTTGAACTTTTGG+TGG - chr7.2:41297206-41297225 None:intergenic 35.0%
! GTCTTCTTTTGCTACTCATT+TGG + chr7.2:41297461-41297480 MS.gene46105:intron 35.0%
! TAGCTTGTCCATAAAGAATC+CGG + chr7.2:41298699-41298718 MS.gene46105:CDS 35.0%
! TAGGATTTGATCTGAAGTGT+GGG - chr7.2:41296782-41296801 None:intergenic 35.0%
! TTAGGATTTGATCTGAAGTG+TGG - chr7.2:41296783-41296802 None:intergenic 35.0%
!! TACAGAGTGTTGTCAAATAG+TGG - chr7.2:41297077-41297096 None:intergenic 35.0%
!! TGGTGTTATGTTTGGTATCA+TGG + chr7.2:41297877-41297896 MS.gene46105:intron 35.0%
!!! TGATTTTCCTTTTGAGATCG+AGG + chr7.2:41298441-41298460 MS.gene46105:CDS 35.0%
!!! TTATAGCATGTTTTGGCAAC+TGG - chr7.2:41297761-41297780 None:intergenic 35.0%
AATGGAGTGTGTATGGAGTT+TGG + chr7.2:41298643-41298662 MS.gene46105:CDS 40.0%
AGGAAGAAATGGAGTGTGTA+TGG + chr7.2:41298636-41298655 MS.gene46105:CDS 40.0%
AGTGTTGTGGTGAATGTTTG+TGG + chr7.2:41296679-41296698 MS.gene46105:intron 40.0%
ATCAAATCCTAAGGTGTGTC+CGG + chr7.2:41296791-41296810 MS.gene46105:intron 40.0%
ATGGAGTGTGTATGGAGTTT+GGG + chr7.2:41298644-41298663 MS.gene46105:CDS 40.0%
ATTGTGGGACAGATCTACAA+GGG - chr7.2:41298286-41298305 None:intergenic 40.0%
CAAAGAATCTTTGGCATCAC+TGG - chr7.2:41297996-41298015 None:intergenic 40.0%
CAAGCAGTGTTGTCAAATGT+CGG - chr7.2:41297173-41297192 None:intergenic 40.0%
CAATGACACATGTCAGATAC+CGG - chr7.2:41296813-41296832 None:intergenic 40.0%
CTATCAATCACAACCTCATC+AGG - chr7.2:41298682-41298701 None:intergenic 40.0%
GCAAAGGCTCAAAATCATAG+TGG - chr7.2:41297939-41297958 None:intergenic 40.0%
TACTCGTGTTGTCAATGGAT+CGG + chr7.2:41297006-41297025 MS.gene46105:intron 40.0%
TATGTTTGGTATCATGGTGC+TGG + chr7.2:41297883-41297902 MS.gene46105:intron 40.0%
TCAATGTGCCAGTACTTCAT+AGG + chr7.2:41296901-41296920 MS.gene46105:intron 40.0%
TTGTAGATCTGTCCCACAAT+CGG + chr7.2:41298286-41298305 MS.gene46105:intron 40.0%
! GGTTTGTTTCAAGATCAGTC+TGG + chr7.2:41297857-41297876 MS.gene46105:intron 40.0%
!! GATCAGTCTGGTGTTATGTT+TGG + chr7.2:41297869-41297888 MS.gene46105:intron 40.0%
ACTCGTGTTGTCAATGGATC+GGG + chr7.2:41297007-41297026 MS.gene46105:intron 45.0%
ATTGTGGCGAAGGAGGTTAA+CGG - chr7.2:41296263-41296282 None:intergenic 45.0%
CACATGTGTCAGTGTAGTGT+CGG - chr7.2:41296839-41296858 None:intergenic 45.0%
CCCTGAAAAAGACCGATTGT+GGG - chr7.2:41298301-41298320 None:intergenic 45.0%
GAACAACGACAGCAGTTATG+AGG - chr7.2:41297554-41297573 None:intergenic 45.0%
GAAGACCAGCTGGTATATGA+GGG + chr7.2:41298730-41298749 MS.gene46105:CDS 45.0%
GATTGTGGGACAGATCTACA+AGG - chr7.2:41298287-41298306 None:intergenic 45.0%
TCAAAATCATAGTGGCTCCG+TGG - chr7.2:41297931-41297950 None:intergenic 45.0%
TCTTGCGCTGTTACTAGTTC+AGG - chr7.2:41297415-41297434 None:intergenic 45.0%
TGAAATCGACTGTGCTCTTG+AGG + chr7.2:41296375-41296394 MS.gene46105:CDS 45.0%
TGAAGACCAGCTGGTATATG+AGG + chr7.2:41298729-41298748 MS.gene46105:CDS 45.0%
TGGAGTGTGTATGGAGTTTG+GGG + chr7.2:41298645-41298664 MS.gene46105:CDS 45.0%
TTTCACTGTCAAGGACTCGA+AGG - chr7.2:41296360-41296379 None:intergenic 45.0%
! ACGAGAGGGTACAAAATGAG+TGG - chr7.2:41296290-41296309 None:intergenic 45.0%
! CACAGTCGATTTCACTGTCA+AGG - chr7.2:41296369-41296388 None:intergenic 45.0%
! CTTTTCCAGCTTGACTTTCC+CGG + chr7.2:41298418-41298437 MS.gene46105:intron 45.0%
! TCCCACAATCGGTCTTTTTC+AGG + chr7.2:41298297-41298316 MS.gene46105:intron 45.0%
!! AGCTGGTCTTCAGATTCATC+CGG - chr7.2:41298721-41298740 None:intergenic 45.0%
!! CCCACAATCGGTCTTTTTCA+GGG + chr7.2:41298298-41298317 MS.gene46105:intron 45.0%
!! TCAAGTTGACATCCCTAACG+TGG + chr7.2:41298525-41298544 MS.gene46105:CDS 45.0%
!! TCGAAGGAGAGTATCATCAG+CGG - chr7.2:41296344-41296363 None:intergenic 45.0%
!!! CCACAATCGGTCTTTTTCAG+GGG + chr7.2:41298299-41298318 MS.gene46105:intron 45.0%
AATCACCGGGAAAGTCAAGC+TGG - chr7.2:41298426-41298445 None:intergenic 50.0%
ACCTCAACAGAGTGAGGATG+AGG + chr7.2:41298549-41298568 MS.gene46105:CDS 50.0%
CCCCTGAAAAAGACCGATTG+TGG - chr7.2:41298302-41298321 None:intergenic 50.0%
CTCGTGTTGTCAATGGATCG+GGG + chr7.2:41297008-41297027 MS.gene46105:intron 50.0%
GAGCCACTGTGGTTTAGCAA+AGG - chr7.2:41297955-41297974 None:intergenic 50.0%
GAGCCTTTGCTAAACCACAG+TGG + chr7.2:41297949-41297968 MS.gene46105:intron 50.0%
GAGTGGTTTCATTGTGGCGA+AGG - chr7.2:41296273-41296292 None:intergenic 50.0%
GGATGAATCTGAAGACCAGC+TGG + chr7.2:41298720-41298739 MS.gene46105:CDS 50.0%
GGGTTGTCCTCGATCTCAAA+AGG - chr7.2:41298451-41298470 None:intergenic 50.0%
TAAACCACAGTGGCTCACTG+CGG + chr7.2:41297959-41297978 MS.gene46105:intron 50.0%
TCAGATACCGGACACACCTT+AGG - chr7.2:41296801-41296820 None:intergenic 50.0%
TCATAGTGGCTCCGTGGTTT+CGG - chr7.2:41297925-41297944 None:intergenic 50.0%
TGGTTTCATTGTGGCGAAGG+AGG - chr7.2:41296270-41296289 None:intergenic 50.0%
! GTTTGGTATCATGGTGCTGG+TGG + chr7.2:41297886-41297905 MS.gene46105:intron 50.0%
! TCTGTTGAGGTGCCACGTTA+GGG - chr7.2:41298540-41298559 None:intergenic 50.0%
! TTTGAGATCGAGGACAACCC+TGG + chr7.2:41298451-41298470 MS.gene46105:CDS 50.0%
!! AAGGAGAGTATCATCAGCGG+GGG - chr7.2:41296341-41296360 None:intergenic 50.0%
!! CGAAGGAGAGTATCATCAGC+GGG - chr7.2:41296343-41296362 None:intergenic 50.0%
!! GAAGGAGAGTATCATCAGCG+GGG - chr7.2:41296342-41296361 None:intergenic 50.0%
!!! ATCGGTCTTTTTCAGGGGTC+AGG + chr7.2:41298304-41298323 MS.gene46105:intron 50.0%
ACAGTGGCTCACTGCGGTTT+GGG + chr7.2:41297965-41297984 MS.gene46105:intron 55.0%
CAGGTCCCTCATATACCAGC+TGG - chr7.2:41298738-41298757 None:intergenic 55.0%
CCCTCTCGTAGCTTCGCTTA+CGG + chr7.2:41296301-41296320 MS.gene46105:CDS 55.0%
CCGTAAGCGAAGCTACGAGA+GGG - chr7.2:41296304-41296323 None:intergenic 55.0%
GATTGCGCTGTGGAAGGTTC+TGG - chr7.2:41296239-41296258 None:intergenic 55.0%
GCCTCATCCTCACTCTGTTG+AGG - chr7.2:41298553-41298572 None:intergenic 55.0%
GGGTGCTAGTGCTACAGAGT+CGG - chr7.2:41296762-41296781 None:intergenic 55.0%
GGTGACTGCTTTCCCTGATG+AGG + chr7.2:41298666-41298685 MS.gene46105:CDS 55.0%
TAGTGGCGCTGTAGCACTGT+AGG - chr7.2:41297060-41297079 None:intergenic 55.0%
TTGCGCCTTTGCCGAAACCA+CGG + chr7.2:41297911-41297930 MS.gene46105:intron 55.0%
! CTCTGTTGAGGTGCCACGTT+AGG - chr7.2:41298541-41298560 None:intergenic 55.0%
AACGGCGATTGCGCTGTGGA+AGG - chr7.2:41296245-41296264 None:intergenic 60.0%
CAAACCGCAGTGAGCCACTG+TGG - chr7.2:41297966-41297985 None:intergenic 60.0%
CACAGTGGCTCACTGCGGTT+TGG + chr7.2:41297964-41297983 MS.gene46105:intron 60.0%
CGTGGCACCTCAACAGAGTG+AGG + chr7.2:41298543-41298562 MS.gene46105:CDS 60.0%
GCCGTAAGCGAAGCTACGAG+AGG - chr7.2:41296305-41296324 None:intergenic 60.0%
GGTTAACGGCGATTGCGCTG+TGG - chr7.2:41296249-41296268 None:intergenic 60.0%
TGGAGGAAGTTGCCGCTGCA+CGG - chr7.2:41296219-41296238 None:intergenic 60.0%
TGGCTCCGTGGTTTCGGCAA+AGG - chr7.2:41297919-41297938 None:intergenic 60.0%
! TGCGCTGTGGAAGGTTCTGG+AGG - chr7.2:41296236-41296255 None:intergenic 60.0%
CTGCACGGCGAGAGAGGAGA+GGG - chr7.2:41296204-41296223 None:intergenic 65.0%
GCGAGAGAGGAGAGGGAGTG+CGG - chr7.2:41296197-41296216 None:intergenic 65.0%
TCTCCTCTCTCGCCGTGCAG+CGG + chr7.2:41296204-41296223 MS.gene46105:CDS 65.0%
! AGAGAGGAGAGGGAGTGCGG+CGG - chr7.2:41296194-41296213 None:intergenic 65.0%
GCTGCACGGCGAGAGAGGAG+AGG - chr7.2:41296205-41296224 None:intergenic 70.0%
TTGCCGCTGCACGGCGAGAG+AGG - chr7.2:41296210-41296229 None:intergenic 70.0%
! GAGGAGAGGGAGTGCGGCGG+CGG - chr7.2:41296191-41296210 None:intergenic 75.0%
! GGCGGTGGCGCGACGGAGAG+CGG - chr7.2:41296173-41296192 None:intergenic 80.0%
!! GAGAGGGAGTGCGGCGGCGG+TGG - chr7.2:41296188-41296207 None:intergenic 80.0%
! GTGCGGCGGCGGTGGCGCGA+CGG - chr7.2:41296180-41296199 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 41296157 41298768 41296157 ID=MS.gene46105
chr7.2 mRNA 41296157 41298768 41296157 ID=MS.gene46105.t1;Parent=MS.gene46105
chr7.2 exon 41296157 41296423 41296157 ID=MS.gene46105.t1.exon1;Parent=MS.gene46105.t1
chr7.2 CDS 41296157 41296423 41296157 ID=cds.MS.gene46105.t1;Parent=MS.gene46105.t1
chr7.2 exon 41298427 41298768 41298427 ID=MS.gene46105.t1.exon2;Parent=MS.gene46105.t1
chr7.2 CDS 41298427 41298768 41298427 ID=cds.MS.gene46105.t1;Parent=MS.gene46105.t1
Gene Sequence

>MS.gene46105

ATGGCTATGTACACCGCTCTCCGTCGCGCCACCGCCGCCGCACTCCCTCTCCTCTCTCGCCGTGCAGCGGCAACTTCCTCCAGAACCTTCCACAGCGCAATCGCCGTTAACCTCCTTCGCCACAATGAAACCACTCATTTTGTACCCTCTCGTAGCTTCGCTTACGGCGTTTTAGCGAAAACCCCCGCTGATGATACTCTCCTTCGAGTCCTTGACAGTGAAATCGACTGTGCTCTTGAGGATAATAATGAAGGCCTTTTAACAAACGTAATTTTTTTTATTACCCTTTGTTTTTAAGTTTTTTTTTTTTTTTTTTTTTTTTGTGATTGTAATTTTCTTTGAAGATTGTTTATTTTTCTTCAGATTTGCGTTCTTTAATGAAAGTTTCAATTTTTTTTTGTTGGGTTAGTGAGTTTATTTGATAAAAGTTATGTATGCTTAAATTGTGTTTTTCCCCTTTTGTGAAGTTTTGTTTTTATTAGTGGATCTTAATAGAATGATAAGGGTTTTTATAGGGTTGTTAGTGTTGTGGTGAATGTTTGTGGTGAATTTCCCTTTGTTCCATTTCCTTGTAAGATGTAAGAATTCTATAATGGTTGTTACCGACTCTGTAGCACTAGCACCCACACTTCAGATCAAATCCTAAGGTGTGTCCGGTATCTGACATGTGTCATTGACACCGACACTACACTGACACATGTGATCACATTGAATCATGTCATGTTCTGAACATTATTATTGGTGTCAATGTGCCAGTACTTCATAGGTAACACATTTAATCACATTGAATCATGTCATTTTCTCGAAATATTACTGGTTTCATTGTGTTAGTGTCAGTACTTCATAGTTTACTCGTGTTGTCAATGGATCGGGGTTTATAGTAGTTTGTTCAAATTTCAGCCTACAGTGCTACAGCGCCACTATTTGACAACACTCTGTACTAAATATGTTTCACATAGCAGTTGTGATTTGTTCAAGTTCTGTTACACTGTAGTGTTATATCACTGGTATAGCCGACATTTGACAACACTGCTTGTTTATGATTTCCACCAAAAGTTCAAATTCTGCTACACTGTATAGCCGATATTTGACAACACTGCTTGTTTATGATTTCCACCGAAAAAATGATATTGGATGAATGATGTCCACTTTGAATGTAGCTCAAAGTTTGCATTTAGTTGATGTAAATAAAGTGGAATGGTTGAAGAACTCAATTGTGTTGTGTGTATGTGGGTAATTGTTTTTCTTAATTTGTCCTGAACTAGTAACAGCGCAAGATTTGTCTTTTGTAGTCTGGGTTTGTTGTCTTCTTTTGCTACTCATTTGGTTTATAAGCTTAGCTTAATCAGTGTCAATAATATTTCTACCAGTATCATAGTTTTGCACATGTGAGTCCTCATAACTGCTGTCGTTGTTCATTTTTGCTTTTAAGTTCTTGATCTTTTAGTGGTTAAAAATACATACCACTCCATTTTTGTTTATATTTCACTCCGTATGTTTAAATGACCTATTTTTTAAGTCTGGATTTATTTTTGTCTGTCTGGGATTCTTTGTTTGTATTTTTCAATTATTTGCGTGTAGGATTTAATAAAATTTACATACCAGTTGCCAAAACATGCTATAACTTGATTGGATTTGTTAACCTTTTACCCATTATATGTAAATTGCTCATTCAAATATTGTTTATTGCTCTGGTTGAGGGTTTGTTTCAAGATCAGTCTGGTGTTATGTTTGGTATCATGGTGCTGGTGGCTTTGCGCCTTTGCCGAAACCACGGAGCCACTATGATTTTGAGCCTTTGCTAAACCACAGTGGCTCACTGCGGTTTGGGCAAAGCCAGTGATGCCAAAGATTCTTTGATTTGCTGCTATGAAGTGTATTTTCCTTGTAGATTTGAATATCTCTTGTATTAATAAACCTTTTTTTTAGTCTGAAAGTTGAAACATTGTAGTATAAAACTGAGAAAACATCATATCATTATCTGCAGATTATCTGTGGTATAAGAAAATGCAGGATAATTATTATTAACTTTGAGTGTCATTTATTATAACTTTGAGTGTCATATACTGATGATTGGCACTAGGAATTCTGTATTCAAGCTGCAAAATATAAGTTAGAAAAAGATTCCCTTGTAGATCTGTCCCACAATCGGTCTTTTTCAGGGGTCAGGATTAACACAGATTATCATATGAATATTTATGTCAACACATTTGCTTTTGATATTAACTGTCATTTTAAGTTCACTGTCACTTTTGTGTAAACTTTTCCAGCTTGACTTTCCCGGTGATTTTCCTTTTGAGATCGAGGACAACCCTGGAGAAAGAACTATTCAACTGAAAAGACAATTTGAAGATGAAACTATCACAGTTCAAGTTGACATCCCTAACGTGGCACCTCAACAGAGTGAGGATGAGGCTGACCTCGAGAAGAATGAGAATGATAGCGAATCTAGTATTCCTTTAGTTGTTACTGTTTTCAAAGGAAGAAATGGAGTGTGTATGGAGTTTGGGGTGACTGCTTTCCCTGATGAGGTTGTGATTGATAGCTTGTCCATAAAGAATCCGGATGAATCTGAAGACCAGCTGGTATATGAGGGACCTGAGTTCACGTAA
Protein sequence

>MS.gene46105.t1

MAMYTALRRATAAALPLLSRRAAATSSRTFHSAIAVNLLRHNETTHFVPSRSFAYGVLAKTPADDTLLRVLDSEIDCALEDNNEGLLTNLDFPGDFPFEIEDNPGERTIQLKRQFEDETITVQVDIPNVAPQQSEDEADLEKNENDSESSIPLVVTVFKGRNGVCMEFGVTAFPDEVVIDSLSIKNPDESEDQLVYEGPEFT