Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053230.t1 | XP_003604201.1 | 90.3 | 238 | 18 | 2 | 1 | 234 | 1 | 237 | 5.20E-113 | 417.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053230.t1 | Q8W487 | 29.3 | 239 | 162 | 4 | 2 | 233 | 12 | 250 | 8.9e-21 | 102.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053230.t1 | G7JD84 | 90.3 | 238 | 18 | 2 | 1 | 234 | 1 | 237 | 3.7e-113 | 417.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053230 | MS.gene055808 | 0.829264 | 5.67E-55 | -1.69E-46 |
| MS.gene053230 | MS.gene056091 | 0.803771 | 2.97E-49 | -1.69E-46 |
| MS.gene053230 | MS.gene060429 | 0.803474 | 3.43E-49 | -1.69E-46 |
| MS.gene053230 | MS.gene067521 | 0.802064 | 6.70E-49 | -1.69E-46 |
| MS.gene053230 | MS.gene068135 | 0.811854 | 5.68E-51 | -1.69E-46 |
| MS.gene053230 | MS.gene073637 | 0.823559 | 1.30E-53 | -1.69E-46 |
| MS.gene053230 | MS.gene073785 | 0.803675 | 3.11E-49 | -1.69E-46 |
| MS.gene053230 | MS.gene21700 | 0.806521 | 7.90E-50 | -1.69E-46 |
| MS.gene053230 | MS.gene22270 | 0.815022 | 1.14E-51 | -1.69E-46 |
| MS.gene053230 | MS.gene22974 | 0.808352 | 3.23E-50 | -1.69E-46 |
| MS.gene053230 | MS.gene25207 | 0.826619 | 2.46E-54 | -1.69E-46 |
| MS.gene053230 | MS.gene31468 | 0.824561 | 7.55E-54 | -1.69E-46 |
| MS.gene053230 | MS.gene50986 | 0.83714 | 6.20E-57 | -1.69E-46 |
| MS.gene053230 | MS.gene56067 | 0.805574 | 1.25E-49 | -1.69E-46 |
| MS.gene053230 | MS.gene68979 | 0.843712 | 1.18E-58 | -1.69E-46 |
| MS.gene053230 | MS.gene71825 | 0.812886 | 3.38E-51 | -1.69E-46 |
| MS.gene053230 | MS.gene71826 | 0.801943 | 7.09E-49 | -1.69E-46 |
| MS.gene053230 | MS.gene71949 | 0.814678 | 1.36E-51 | -1.69E-46 |
| MS.gene053230 | MS.gene74503 | 0.817448 | 3.28E-52 | -1.69E-46 |
| MS.gene053230 | MS.gene75187 | 0.805183 | 1.51E-49 | -1.69E-46 |
| MS.gene053230 | MS.gene76002 | 0.812921 | 3.32E-51 | -1.69E-46 |
| MS.gene053230 | MS.gene83091 | 0.825303 | 5.05E-54 | -1.69E-46 |
| MS.gene053230 | MS.gene83830 | 0.817462 | 3.26E-52 | -1.69E-46 |
| MS.gene053230 | MS.gene84040 | 0.830442 | 2.93E-55 | -1.69E-46 |
| MS.gene053230 | MS.gene89562 | 0.800869 | 1.18E-48 | -1.69E-46 |
| MS.gene053230 | MS.gene93501 | 0.810679 | 1.02E-50 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053230.t1 | MTR_4g006560 | 89.496 | 238 | 20 | 2 | 1 | 234 | 1 | 237 | 1.02e-148 | 414 |
| MS.gene053230.t1 | MTR_1g013120 | 44.503 | 191 | 102 | 4 | 45 | 233 | 45 | 233 | 4.21e-56 | 179 |
| MS.gene053230.t1 | MTR_7g063520 | 33.175 | 211 | 127 | 5 | 33 | 233 | 48 | 254 | 8.61e-29 | 109 |
| MS.gene053230.t1 | MTR_5g080880 | 38.506 | 174 | 91 | 4 | 74 | 232 | 82 | 254 | 1.31e-28 | 110 |
| MS.gene053230.t1 | MTR_5g080870 | 28.659 | 164 | 98 | 4 | 69 | 232 | 75 | 219 | 1.29e-12 | 66.6 |
| MS.gene053230.t1 | MTR_5g093000 | 25.434 | 173 | 111 | 6 | 69 | 234 | 54 | 215 | 1.25e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053230.t1 | AT1G15870 | 52.653 | 245 | 102 | 5 | 1 | 234 | 1 | 242 | 1.07e-84 | 252 |
| MS.gene053230.t1 | AT1G80720 | 53.252 | 246 | 99 | 7 | 1 | 234 | 1 | 242 | 9.71e-81 | 242 |
| MS.gene053230.t1 | AT1G80720 | 58.763 | 194 | 74 | 4 | 43 | 234 | 1 | 190 | 4.63e-75 | 226 |
| MS.gene053230.t1 | AT4G31930 | 39.496 | 238 | 135 | 6 | 1 | 233 | 1 | 234 | 1.35e-51 | 167 |
| MS.gene053230.t1 | AT2G39795 | 29.289 | 239 | 162 | 4 | 2 | 233 | 12 | 250 | 9.49e-27 | 103 |
| MS.gene053230.t1 | AT3G55605 | 34.146 | 164 | 96 | 3 | 80 | 233 | 97 | 258 | 2.77e-25 | 100 |
| MS.gene053230.t1 | AT5G02050 | 29.952 | 207 | 130 | 6 | 41 | 233 | 62 | 267 | 3.44e-24 | 97.4 |
| MS.gene053230.t1 | AT5G05990 | 27.976 | 168 | 106 | 2 | 80 | 232 | 91 | 258 | 1.07e-19 | 85.5 |
| MS.gene053230.t1 | AT2G39790 | 27.149 | 221 | 146 | 6 | 18 | 232 | 28 | 239 | 2.32e-17 | 78.6 |
| MS.gene053230.t1 | AT4G32605 | 31.183 | 93 | 59 | 2 | 146 | 233 | 127 | 219 | 6.78e-13 | 66.2 |
Find 52 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGAGATGTAAGTTCTTC+TGG | 0.225637 | 4.2:+92862128 | None:intergenic |
| CGAAAGCTTCTTTGCGCATT+TGG | 0.227889 | 4.2:+92862109 | None:intergenic |
| CTTGGAGATATTGACAATTA+AGG | 0.236484 | 4.2:+92859284 | None:intergenic |
| ATTTGCCAATGAAAACATTA+AGG | 0.265158 | 4.2:-92859394 | MS.gene053230:CDS |
| AATGGGAATTTGGTTGATTA+GGG | 0.289613 | 4.2:+92862200 | None:intergenic |
| GAATGGGAATTTGGTTGATT+AGG | 0.302269 | 4.2:+92862199 | None:intergenic |
| GTTGATTCTTTACAGGGAAT+TGG | 0.305625 | 4.2:-92858903 | MS.gene053230:intron |
| CGGACAGTATAGTGATAAAA+AGG | 0.337671 | 4.2:-92859221 | MS.gene053230:CDS |
| GGATAGTCTTTACGATTTCT+TGG | 0.338117 | 4.2:-92858867 | MS.gene053230:CDS |
| GTTGTTGTTGAATGGGAATT+TGG | 0.349399 | 4.2:+92862190 | None:intergenic |
| GTTGAAGCCACCATGTTTGA+TGG | 0.365174 | 4.2:-92859372 | MS.gene053230:CDS |
| TTTACGATTTCTTGGAAGTA+AGG | 0.369810 | 4.2:-92858859 | MS.gene053230:CDS |
| GAAAGCTTCTTTGCGCATTT+GGG | 0.378478 | 4.2:+92862110 | None:intergenic |
| GGAATTGGATGATGAGTTGC+AGG | 0.386849 | 4.2:-92858888 | MS.gene053230:CDS |
| AATCATGTGCTCTGCTTGGC+CGG | 0.413847 | 4.2:-92859241 | MS.gene053230:CDS |
| AATTTCATTACGAAGAAGTC+TGG | 0.426508 | 4.2:+92862074 | None:intergenic |
| TTCGGTTCATTTGTGGTGGA+TGG | 0.428242 | 4.2:-92859453 | MS.gene053230:CDS |
| TGACAAGTTCGGTTCATTTG+TGG | 0.433809 | 4.2:-92859460 | MS.gene053230:CDS |
| GCATAGTCGTTGTTGTTGAA+TGG | 0.459987 | 4.2:+92862182 | None:intergenic |
| CTGGAGATGATTTGAGAAGA+AGG | 0.473022 | 4.2:+92862147 | None:intergenic |
| TTGCAGCCTACTGACAAGTT+CGG | 0.474006 | 4.2:-92859471 | MS.gene053230:intron |
| AATGTAATCCATCGCTCACC+GGG | 0.484386 | 4.2:+92859426 | None:intergenic |
| AAGTAAACTTACTCAAAGTC+AGG | 0.487021 | 4.2:+92859150 | None:intergenic |
| CAATGTAATCCATCGCTCAC+CGG | 0.493071 | 4.2:+92859425 | None:intergenic |
| CTCAAAGTCAGGACCAGCAT+AGG | 0.500380 | 4.2:+92859161 | None:intergenic |
| CATAGTCGTTGTTGTTGAAT+GGG | 0.501011 | 4.2:+92862183 | None:intergenic |
| CAAGGGAGATGGTCATGTGC+TGG | 0.502080 | 4.2:-92859265 | MS.gene053230:CDS |
| CAGCACATGACCATCTCCCT+TGG | 0.512206 | 4.2:+92859266 | None:intergenic |
| AACAGAGATCATAGGATGGA+TGG | 0.515569 | 4.2:-92858780 | MS.gene053230:CDS |
| AAGGAGAAAACAGAGATCAT+AGG | 0.519039 | 4.2:-92858788 | MS.gene053230:CDS |
| GTCAATATCTCCAAGGGAGA+TGG | 0.521988 | 4.2:-92859276 | MS.gene053230:CDS |
| TTACGATTTCTTGGAAGTAA+GGG | 0.523724 | 4.2:-92858858 | MS.gene053230:CDS |
| TGGAAATCATGTGCTCTGCT+TGG | 0.524404 | 4.2:-92859245 | MS.gene053230:CDS |
| CAAGTTCGGTTCATTTGTGG+TGG | 0.534990 | 4.2:-92859457 | MS.gene053230:CDS |
| AAAATACTTACAGGATTGGA+AGG | 0.538098 | 4.2:+92862027 | None:intergenic |
| TACAGGATTGGAAGGAGAAG+AGG | 0.540707 | 4.2:+92862035 | None:intergenic |
| ATGATTTGAGAAGAAGGAGA+AGG | 0.541837 | 4.2:+92862153 | None:intergenic |
| ATGACAGCTGAGCCCTATGC+TGG | 0.544341 | 4.2:-92859174 | MS.gene053230:CDS |
| ATGGCCGACCCGGTGAGCGA+TGG | 0.552023 | 4.2:-92859434 | MS.gene053230:CDS |
| TTTGTGGTGGATGGCCGACC+CGG | 0.552350 | 4.2:-92859444 | MS.gene053230:CDS |
| CTTAATTGTCAATATCTCCA+AGG | 0.564925 | 4.2:-92859283 | MS.gene053230:CDS |
| TCAAAGTCAGGACCAGCATA+GGG | 0.570818 | 4.2:+92859162 | None:intergenic |
| TTAATTGTCAATATCTCCAA+GGG | 0.571494 | 4.2:-92859282 | MS.gene053230:CDS |
| TACGATTTCTTGGAAGTAAG+GGG | 0.573631 | 4.2:-92858857 | MS.gene053230:CDS |
| TAATCCATCGCTCACCGGGT+CGG | 0.605600 | 4.2:+92859430 | None:intergenic |
| AGAAAACAGAGATCATAGGA+TGG | 0.614854 | 4.2:-92858784 | MS.gene053230:CDS |
| AGGAACAGCTCCATCAAACA+TGG | 0.627059 | 4.2:+92859362 | None:intergenic |
| GATCATAGGATGGATGGAGA+AGG | 0.628625 | 4.2:-92858774 | MS.gene053230:CDS |
| AATGAACCGAACTTGTCAGT+AGG | 0.644093 | 4.2:+92859465 | None:intergenic |
| ATGCGCAAAGAAGCTTTCGA+AGG | 0.659024 | 4.2:-92862105 | MS.gene053230:CDS |
| AACAGCTCCATCAAACATGG+TGG | 0.722000 | 4.2:+92859365 | None:intergenic |
| GCATCAGTACATGAAACACA+AGG | 0.733324 | 4.2:-92858807 | MS.gene053230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATCTTAATTTTACAAAAT+CGG | + | chr4.2:92859601-92859620 | None:intergenic | 10.0% |
| !!! | ATTTTGTAAAATTAAGATTT+AGG | - | chr4.2:92859601-92859620 | MS.gene053230:intron | 10.0% |
| !! | AAGATGAAATAAAGTTAAAT+TGG | - | chr4.2:92859282-92859301 | MS.gene053230:CDS | 15.0% |
| !! | ATACAATCAATTTCAAAATA+CGG | + | chr4.2:92861059-92861078 | None:intergenic | 15.0% |
| !!! | AGAACTTTTTACTTTTTTTA+AGG | - | chr4.2:92859068-92859087 | MS.gene053230:intron | 15.0% |
| !!! | ATATAAAGAATCTTTTTGAT+TGG | + | chr4.2:92859910-92859929 | None:intergenic | 15.0% |
| !!! | ATTTTGAAAAATAAAGTTGT+GGG | - | chr4.2:92860550-92860569 | MS.gene053230:intron | 15.0% |
| !!! | CAACTTAATTTTTTAAAATC+AGG | + | chr4.2:92860239-92860258 | None:intergenic | 15.0% |
| !!! | TTTATATTTTGTTATAGACA+TGG | - | chr4.2:92859923-92859942 | MS.gene053230:intron | 15.0% |
| !! | AAAAAAAATACTTACAGGAT+TGG | + | chr4.2:92858959-92858978 | None:intergenic | 20.0% |
| !! | GAGAAAAAAAAAATACTTAC+AGG | + | chr4.2:92858964-92858983 | None:intergenic | 20.0% |
| !! | TTATGAAAATAAGCTCAAAA+CGG | - | chr4.2:92859348-92859367 | MS.gene053230:CDS | 20.0% |
| !!! | AAGAATATTTAGAGTTTGTT+TGG | - | chr4.2:92860629-92860648 | MS.gene053230:intron | 20.0% |
| !!! | AATTTTTTAAAATCAGGCAT+GGG | + | chr4.2:92860233-92860252 | None:intergenic | 20.0% |
| !!! | ACTATTGCATAATAGAATTT+TGG | - | chr4.2:92862014-92862033 | MS.gene053230:intron | 20.0% |
| !!! | AGTTAAACTGTTTTTTGTAT+AGG | - | chr4.2:92859743-92859762 | MS.gene053230:intron | 20.0% |
| !!! | ATGGTGTTTTTATTTCTAAA+AGG | - | chr4.2:92861322-92861341 | MS.gene053230:intron | 20.0% |
| !!! | CAACTTAATTTTACAAAATC+AGG | + | chr4.2:92860800-92860819 | None:intergenic | 20.0% |
| !!! | CAACTTTATTTTTCAAAATC+AGG | + | chr4.2:92860549-92860568 | None:intergenic | 20.0% |
| !!! | CCAAAATAGTATATTTTCAT+CGG | + | chr4.2:92861015-92861034 | None:intergenic | 20.0% |
| !!! | GATTTTGAAAAATAAAGTTG+TGG | - | chr4.2:92860549-92860568 | MS.gene053230:intron | 20.0% |
| !!! | TAATTTTACAAAATCAGGTA+TGG | + | chr4.2:92860795-92860814 | None:intergenic | 20.0% |
| !!! | TAATTTTTTAAAATCAGGCA+TGG | + | chr4.2:92860234-92860253 | None:intergenic | 20.0% |
| !!! | TTACTTTTTTTAAGGTAGTT+TGG | - | chr4.2:92859076-92859095 | MS.gene053230:intron | 20.0% |
| !!! | TTTAGCTTTTTCCTAAATAT+CGG | - | chr4.2:92860594-92860613 | MS.gene053230:intron | 20.0% |
| !!! | TTTGGAATAACTTAAGAAAA+CGG | + | chr4.2:92859432-92859451 | None:intergenic | 20.0% |
| ! | AAACATCTTGTGTAAAAAAC+AGG | - | chr4.2:92860086-92860105 | MS.gene053230:intron | 25.0% |
| ! | AACATCTTGTGTAAAAAACA+GGG | - | chr4.2:92860087-92860106 | MS.gene053230:intron | 25.0% |
| ! | AAGTTGTTTATCCAAAAACA+GGG | + | chr4.2:92859198-92859217 | None:intergenic | 25.0% |
| ! | AGTTGAAATTGAATGGATAA+TGG | - | chr4.2:92860734-92860753 | MS.gene053230:intron | 25.0% |
| ! | ATAAGCAATTGGAAATTGTT+TGG | + | chr4.2:92859450-92859469 | None:intergenic | 25.0% |
| ! | ATTCAGATTAAGACAATAGT+TGG | + | chr4.2:92860506-92860525 | None:intergenic | 25.0% |
| ! | ATTTGCCAATGAAAACATTA+AGG | - | chr4.2:92861585-92861604 | MS.gene053230:intron | 25.0% |
| ! | CTTGTAGACATGAATAATTA+GGG | - | chr4.2:92861473-92861492 | MS.gene053230:intron | 25.0% |
| ! | TAAGACTCTGTTTGAATAAA+GGG | + | chr4.2:92860152-92860171 | None:intergenic | 25.0% |
| ! | TAAGTTGTTTATCCAAAAAC+AGG | + | chr4.2:92859199-92859218 | None:intergenic | 25.0% |
| ! | TAGTTAGAACTAGAGTTAAA+GGG | + | chr4.2:92861098-92861117 | None:intergenic | 25.0% |
| ! | TAGTTTCTTCCTAATAATCA+GGG | - | chr4.2:92860847-92860866 | MS.gene053230:intron | 25.0% |
| ! | TCAAAATACGGTTATAAAAG+TGG | + | chr4.2:92861047-92861066 | None:intergenic | 25.0% |
| ! | TCTTGTAGACATGAATAATT+AGG | - | chr4.2:92861472-92861491 | MS.gene053230:intron | 25.0% |
| ! | TGATACCATTTGTTCAAATT+CGG | + | chr4.2:92861937-92861956 | None:intergenic | 25.0% |
| ! | TGTAAAGAATCAACATTAAG+AGG | + | chr4.2:92862070-92862089 | None:intergenic | 25.0% |
| ! | TTAATTGTCAATATCTCCAA+GGG | - | chr4.2:92861697-92861716 | MS.gene053230:intron | 25.0% |
| ! | TTAGTTAGAACTAGAGTTAA+AGG | + | chr4.2:92861099-92861118 | None:intergenic | 25.0% |
| !! | ACTTATTTGAGTTTATCTAC+TGG | + | chr4.2:92859474-92859493 | None:intergenic | 25.0% |
| !! | CCGATGAAAATATACTATTT+TGG | - | chr4.2:92861012-92861031 | MS.gene053230:intron | 25.0% |
| !! | GTCTTAATCTGAATGTTTTT+AGG | - | chr4.2:92860512-92860531 | MS.gene053230:intron | 25.0% |
| !! | TTCAACCTTAATGTTTTCAT+TGG | + | chr4.2:92861593-92861612 | None:intergenic | 25.0% |
| !! | TTTTCTTATCATGGTAGAAA+GGG | - | chr4.2:92860758-92860777 | MS.gene053230:intron | 25.0% |
| !!! | AACTTAACTTGCTATAGATA+TGG | - | chr4.2:92860439-92860458 | MS.gene053230:intron | 25.0% |
| !!! | CTTAATGTTGATTCTTTACA+GGG | - | chr4.2:92862070-92862089 | MS.gene053230:CDS | 25.0% |
| !!! | GATTTTAATTTCCCTGTTTT+TGG | - | chr4.2:92859184-92859203 | MS.gene053230:CDS | 25.0% |
| !!! | TCTTAATGTTGATTCTTTAC+AGG | - | chr4.2:92862069-92862088 | MS.gene053230:CDS | 25.0% |
| !!! | TTAGCTTTTTCCTAAAAATC+AGG | - | chr4.2:92859645-92859664 | MS.gene053230:intron | 25.0% |
| !!! | TTAGCTTTTTCCTAAATATC+GGG | - | chr4.2:92860595-92860614 | MS.gene053230:intron | 25.0% |
| !!! | TTGAAGACTTGATATTTTGA+TGG | - | chr4.2:92861289-92861308 | MS.gene053230:intron | 25.0% |
| AAAATACTTACAGGATTGGA+AGG | + | chr4.2:92858955-92858974 | None:intergenic | 30.0% | |
| AAATAAGCTCAAAACGGTTT+AGG | - | chr4.2:92859354-92859373 | MS.gene053230:CDS | 30.0% | |
| AAGTAAACTTACTCAAAGTC+AGG | + | chr4.2:92861832-92861851 | None:intergenic | 30.0% | |
| AATGGGAATTTGGTTGATTA+GGG | + | chr4.2:92858782-92858801 | None:intergenic | 30.0% | |
| AATTTCATTACGAAGAAGTC+TGG | + | chr4.2:92858908-92858927 | None:intergenic | 30.0% | |
| ACATCTTGTGTAAAAAACAG+GGG | - | chr4.2:92860088-92860107 | MS.gene053230:intron | 30.0% | |
| ACGTCTATAACAAAAGATGA+AGG | + | chr4.2:92859511-92859530 | None:intergenic | 30.0% | |
| AGTTATGAAACCCGATATTT+AGG | + | chr4.2:92860608-92860627 | None:intergenic | 30.0% | |
| AGTTTCTTCCTAATAATCAG+GGG | - | chr4.2:92860848-92860867 | MS.gene053230:intron | 30.0% | |
| ATGCGCTATTTAGTACAAAA+TGG | - | chr4.2:92861971-92861990 | MS.gene053230:intron | 30.0% | |
| ATTCAAACAGAGTCTTAAAG+TGG | - | chr4.2:92860000-92860019 | MS.gene053230:intron | 30.0% | |
| ATTCAGATGAAGACAATGTT+AGG | + | chr4.2:92859557-92859576 | None:intergenic | 30.0% | |
| CGTCTATAACAAAAGATGAA+GGG | + | chr4.2:92859510-92859529 | None:intergenic | 30.0% | |
| CTAAGACTCTGTTTGAATAA+AGG | + | chr4.2:92860153-92860172 | None:intergenic | 30.0% | |
| CTTAATTGTCAATATCTCCA+AGG | - | chr4.2:92861696-92861715 | MS.gene053230:intron | 30.0% | |
| CTTAATTGTGTAAACTGTTG+TGG | - | chr4.2:92860965-92860984 | MS.gene053230:intron | 30.0% | |
| CTTCTTCCTAAAATGTGTTT+AGG | - | chr4.2:92860202-92860221 | MS.gene053230:intron | 30.0% | |
| CTTGGAGATATTGACAATTA+AGG | + | chr4.2:92861698-92861717 | None:intergenic | 30.0% | |
| CTTTGTTCTTGTTAGAATCA+TGG | - | chr4.2:92859037-92859056 | MS.gene053230:intron | 30.0% | |
| GTAGTTTCTTCCTAATAATC+AGG | - | chr4.2:92860846-92860865 | MS.gene053230:intron | 30.0% | |
| TATAGCCGAATTTGAACAAA+TGG | - | chr4.2:92861929-92861948 | MS.gene053230:intron | 30.0% | |
| TATCTACTGGTATAAGCAAT+TGG | + | chr4.2:92859461-92859480 | None:intergenic | 30.0% | |
| TCTCAGAAGTTGAAATTGAA+TGG | - | chr4.2:92860727-92860746 | MS.gene053230:intron | 30.0% | |
| TTACGATTTCTTGGAAGTAA+GGG | - | chr4.2:92862121-92862140 | MS.gene053230:CDS | 30.0% | |
| TTCAAACAGAGTCTTAAAGT+GGG | - | chr4.2:92860001-92860020 | MS.gene053230:intron | 30.0% | |
| TTTACGATTTCTTGGAAGTA+AGG | - | chr4.2:92862120-92862139 | MS.gene053230:CDS | 30.0% | |
| TTTGTTTGGATAAACTGTTG+TGG | - | chr4.2:92860643-92860662 | MS.gene053230:intron | 30.0% | |
| ! | CAAAATATTTGGAGCTAGTT+TGG | - | chr4.2:92859679-92859698 | MS.gene053230:intron | 30.0% |
| ! | CCTAGAATCTAAAACAAACT+TGG | - | chr4.2:92861238-92861257 | MS.gene053230:intron | 30.0% |
| ! | CTTTTCTTATCATGGTAGAA+AGG | - | chr4.2:92860757-92860776 | MS.gene053230:intron | 30.0% |
| ! | CTTTTTATCACTATACTGTC+CGG | + | chr4.2:92861760-92861779 | None:intergenic | 30.0% |
| ! | GATTTAGGATAAAGCTACAT+TGG | - | chr4.2:92859616-92859635 | MS.gene053230:intron | 30.0% |
| ! | TACAAAATGGTGTCAAATAG+AGG | - | chr4.2:92861984-92862003 | MS.gene053230:intron | 30.0% |
| ! | TTTGGTTGATTAGGGTTTTT+CGG | + | chr4.2:92858774-92858793 | None:intergenic | 30.0% |
| !! | GATAATGGCTTTTCTTATCA+TGG | - | chr4.2:92860749-92860768 | MS.gene053230:intron | 30.0% |
| !! | GGTTTTTGTTATGGGAAAAT+GGG | - | chr4.2:92859001-92859020 | MS.gene053230:intron | 30.0% |
| !! | TCTCTTGTTGTTTGTGTAAT+GGG | - | chr4.2:92858980-92858999 | MS.gene053230:intron | 30.0% |
| !! | TTCTCTTGTTGTTTGTGTAA+TGG | - | chr4.2:92858979-92858998 | MS.gene053230:intron | 30.0% |
| !!! | AGCTTTTTTCAGTTGGATTT+TGG | - | chr4.2:92861440-92861459 | MS.gene053230:intron | 30.0% |
| !!! | ATTCTCTAGCTTTTTTCAGT+TGG | - | chr4.2:92861433-92861452 | MS.gene053230:intron | 30.0% |
| !!! | CCAAGTTTGTTTTAGATTCT+AGG | + | chr4.2:92861241-92861260 | None:intergenic | 30.0% |
| !!! | GTGTAATGGGTTTTTGTTAT+GGG | - | chr4.2:92858993-92859012 | MS.gene053230:intron | 30.0% |
| !!! | TGTGTAATGGGTTTTTGTTA+TGG | - | chr4.2:92858992-92859011 | MS.gene053230:intron | 30.0% |
| AAGGAGAAAACAGAGATCAT+AGG | - | chr4.2:92862191-92862210 | MS.gene053230:CDS | 35.0% | |
| AGAAAACAGAGATCATAGGA+TGG | - | chr4.2:92862195-92862214 | MS.gene053230:CDS | 35.0% | |
| AGTAAAGACAAACAGTGCAT+TGG | + | chr4.2:92861270-92861289 | None:intergenic | 35.0% | |
| ATAAGCTAAACTCTCTTGGA+TGG | - | chr4.2:92859128-92859147 | MS.gene053230:intron | 35.0% | |
| ATGATTTGAGAAGAAGGAGA+AGG | + | chr4.2:92858829-92858848 | None:intergenic | 35.0% | |
| CAGGTTTCATAGCTACAAAA+TGG | - | chr4.2:92860302-92860321 | MS.gene053230:intron | 35.0% | |
| CGGACAGTATAGTGATAAAA+AGG | - | chr4.2:92861758-92861777 | MS.gene053230:intron | 35.0% | |
| CGTCGTAGCTACAAAATATT+TGG | - | chr4.2:92859668-92859687 | MS.gene053230:intron | 35.0% | |
| CTTTGCAACTAGTATCGTTT+GGG | - | chr4.2:92861407-92861426 | MS.gene053230:intron | 35.0% | |
| GAATGGGAATTTGGTTGATT+AGG | + | chr4.2:92858783-92858802 | None:intergenic | 35.0% | |
| GGATAGTCTTTACGATTTCT+TGG | - | chr4.2:92862112-92862131 | MS.gene053230:CDS | 35.0% | |
| TACGATTTCTTGGAAGTAAG+GGG | - | chr4.2:92862122-92862141 | MS.gene053230:CDS | 35.0% | |
| TAGCTATGAAACCTGATTGT+AGG | + | chr4.2:92860297-92860316 | None:intergenic | 35.0% | |
| TATCTACCAACATAAGCACT+TGG | + | chr4.2:92859875-92859894 | None:intergenic | 35.0% | |
| TCTTTGCAACTAGTATCGTT+TGG | - | chr4.2:92861406-92861425 | MS.gene053230:intron | 35.0% | |
| TTATCATGGTAGAAAGGGTA+AGG | - | chr4.2:92860763-92860782 | MS.gene053230:intron | 35.0% | |
| TTGCATAAGCTAAACTCTCT+TGG | - | chr4.2:92859124-92859143 | MS.gene053230:intron | 35.0% | |
| TTGTACTAAATAGCGCATCA+CGG | + | chr4.2:92861969-92861988 | None:intergenic | 35.0% | |
| TTTGCAACTAGTATCGTTTG+GGG | - | chr4.2:92861408-92861427 | MS.gene053230:intron | 35.0% | |
| ! | ATAAGCACTTGGAGACTTTT+TGG | + | chr4.2:92859864-92859883 | None:intergenic | 35.0% |
| ! | CATAGTCGTTGTTGTTGAAT+GGG | + | chr4.2:92858799-92858818 | None:intergenic | 35.0% |
| ! | CTAGTTTGTGTAAACTGTTG+TGG | - | chr4.2:92860894-92860913 | MS.gene053230:intron | 35.0% |
| ! | GAAGCTCCTAAACACATTTT+AGG | + | chr4.2:92860211-92860230 | None:intergenic | 35.0% |
| ! | GTTGATTCTTTACAGGGAAT+TGG | - | chr4.2:92862076-92862095 | MS.gene053230:CDS | 35.0% |
| ! | GTTGTTGTTGAATGGGAATT+TGG | + | chr4.2:92858792-92858811 | None:intergenic | 35.0% |
| ! | TACAAAATGGTTAGCTAGTG+CGG | - | chr4.2:92860315-92860334 | MS.gene053230:intron | 35.0% |
| ! | TTTAGCTTCTTCCTACAATC+AGG | - | chr4.2:92860283-92860302 | MS.gene053230:intron | 35.0% |
| !! | GGGTTTTTGTTATGGGAAAA+TGG | - | chr4.2:92859000-92859019 | MS.gene053230:intron | 35.0% |
| !! | TTTTGATGGCAATAAGTCGA+TGG | - | chr4.2:92861303-92861322 | MS.gene053230:intron | 35.0% |
| AACAGAGATCATAGGATGGA+TGG | - | chr4.2:92862199-92862218 | MS.gene053230:CDS | 40.0% | |
| AAGTCTCCAAGTGCTTATGT+TGG | - | chr4.2:92859866-92859885 | MS.gene053230:intron | 40.0% | |
| AATACACCAATTAGTGCACC+GGG | - | chr4.2:92860123-92860142 | MS.gene053230:intron | 40.0% | |
| AATGAACCGAACTTGTCAGT+AGG | + | chr4.2:92861517-92861536 | None:intergenic | 40.0% | |
| CAATACACCAATTAGTGCAC+CGG | - | chr4.2:92860122-92860141 | MS.gene053230:intron | 40.0% | |
| CTGGAGATGATTTGAGAAGA+AGG | + | chr4.2:92858835-92858854 | None:intergenic | 40.0% | |
| CTTGTGTAAAAAACAGGGGA+AGG | - | chr4.2:92860092-92860111 | MS.gene053230:intron | 40.0% | |
| GAAAGCTTCTTTGCGCATTT+GGG | + | chr4.2:92858872-92858891 | None:intergenic | 40.0% | |
| GCATCAGTACATGAAACACA+AGG | - | chr4.2:92862172-92862191 | MS.gene053230:CDS | 40.0% | |
| TGACAAGTTCGGTTCATTTG+TGG | - | chr4.2:92861519-92861538 | MS.gene053230:intron | 40.0% | |
| TTCCTAATAATCAGGGGTCA+TGG | - | chr4.2:92860854-92860873 | MS.gene053230:intron | 40.0% | |
| TTGGGAGATGTAAGTTCTTC+TGG | + | chr4.2:92858854-92858873 | None:intergenic | 40.0% | |
| ! | GAGCTAGTTTGGAAAAACTG+TGG | - | chr4.2:92859690-92859709 | MS.gene053230:intron | 40.0% |
| ! | GCATAGTCGTTGTTGTTGAA+TGG | + | chr4.2:92858800-92858819 | None:intergenic | 40.0% |
| AACAGCTCCATCAAACATGG+TGG | + | chr4.2:92861617-92861636 | None:intergenic | 45.0% | |
| AATGTAATCCATCGCTCACC+GGG | + | chr4.2:92861556-92861575 | None:intergenic | 45.0% | |
| AGCCATGACCCCTGATTATT+AGG | + | chr4.2:92860859-92860878 | None:intergenic | 45.0% | |
| AGGAACAGCTCCATCAAACA+TGG | + | chr4.2:92861620-92861639 | None:intergenic | 45.0% | |
| ATGCGCAAAGAAGCTTTCGA+AGG | - | chr4.2:92858874-92858893 | MS.gene053230:CDS | 45.0% | |
| CAAGTTCGGTTCATTTGTGG+TGG | - | chr4.2:92861522-92861541 | MS.gene053230:intron | 45.0% | |
| CAATGTAATCCATCGCTCAC+CGG | + | chr4.2:92861557-92861576 | None:intergenic | 45.0% | |
| CGAAAGCTTCTTTGCGCATT+TGG | + | chr4.2:92858873-92858892 | None:intergenic | 45.0% | |
| GAGTCTTAAAGTGGGAACCT+TGG | - | chr4.2:92860009-92860028 | MS.gene053230:intron | 45.0% | |
| GATCATAGGATGGATGGAGA+AGG | - | chr4.2:92862205-92862224 | MS.gene053230:CDS | 45.0% | |
| GGAATTGGATGATGAGTTGC+AGG | - | chr4.2:92862091-92862110 | MS.gene053230:CDS | 45.0% | |
| GTCAATATCTCCAAGGGAGA+TGG | - | chr4.2:92861703-92861722 | MS.gene053230:intron | 45.0% | |
| GTTCCTGCTCCGAAAAAAAG+TGG | - | chr4.2:92861634-92861653 | MS.gene053230:intron | 45.0% | |
| GTTGAAGCCACCATGTTTGA+TGG | - | chr4.2:92861607-92861626 | MS.gene053230:intron | 45.0% | |
| TACAGGATTGGAAGGAGAAG+AGG | + | chr4.2:92858947-92858966 | None:intergenic | 45.0% | |
| TCAAAGTCAGGACCAGCATA+GGG | + | chr4.2:92861820-92861839 | None:intergenic | 45.0% | |
| TGGAAATCATGTGCTCTGCT+TGG | - | chr4.2:92861734-92861753 | MS.gene053230:intron | 45.0% | |
| TGTTTGAATAAAGGGCAGCC+CGG | + | chr4.2:92860144-92860163 | None:intergenic | 45.0% | |
| TTGCAGCCTACTGACAAGTT+CGG | - | chr4.2:92861508-92861527 | MS.gene053230:intron | 45.0% | |
| ! | AGCTACGACGCCTGATTTTT+AGG | + | chr4.2:92859658-92859677 | None:intergenic | 45.0% |
| ! | CTTGTTGTCACGTGACTGAA+AGG | - | chr4.2:92860044-92860063 | MS.gene053230:intron | 45.0% |
| ! | TCCGAAAAAAAGTGGTGGTG+TGG | - | chr4.2:92861642-92861661 | MS.gene053230:intron | 45.0% |
| ! | TTCGGTTCATTTGTGGTGGA+TGG | - | chr4.2:92861526-92861545 | MS.gene053230:intron | 45.0% |
| !!! | GCCACACCACCACTTTTTTT+CGG | + | chr4.2:92861646-92861665 | None:intergenic | 45.0% |
| AAGGTCACGAGGTCAAGTCA+AGG | - | chr4.2:92860063-92860082 | MS.gene053230:intron | 50.0% | |
| AATCATGTGCTCTGCTTGGC+CGG | - | chr4.2:92861738-92861757 | MS.gene053230:intron | 50.0% | |
| ACAAGTTTACCGTTGCGCCA+AGG | + | chr4.2:92860029-92860048 | None:intergenic | 50.0% | |
| CCTGCTCCGAAAAAAAGTGG+TGG | - | chr4.2:92861637-92861656 | MS.gene053230:intron | 50.0% | |
| CTCAAAGTCAGGACCAGCAT+AGG | + | chr4.2:92861821-92861840 | None:intergenic | 50.0% | |
| !!! | CCACCACTTTTTTTCGGAGC+AGG | + | chr4.2:92861640-92861659 | None:intergenic | 50.0% |
| AAGTGGGAACCTTGGCGCAA+CGG | - | chr4.2:92860017-92860036 | MS.gene053230:intron | 55.0% | |
| ATGACAGCTGAGCCCTATGC+TGG | - | chr4.2:92861805-92861824 | MS.gene053230:intron | 55.0% | |
| CAAGGGAGATGGTCATGTGC+TGG | - | chr4.2:92861714-92861733 | MS.gene053230:intron | 55.0% | |
| CACGTGACTGAAAGGTCACG+AGG | - | chr4.2:92860052-92860071 | MS.gene053230:intron | 55.0% | |
| CAGCACATGACCATCTCCCT+TGG | + | chr4.2:92861716-92861735 | None:intergenic | 55.0% | |
| TAATCCATCGCTCACCGGGT+CGG | + | chr4.2:92861552-92861571 | None:intergenic | 55.0% | |
| !! | TTTGTGGTGGATGGCCGACC+CGG | - | chr4.2:92861535-92861554 | MS.gene053230:intron | 60.0% |
| GGGCAGCCCGGTGCACTAAT+TGG | + | chr4.2:92860132-92860151 | None:intergenic | 65.0% | |
| ATGGCCGACCCGGTGAGCGA+TGG | - | chr4.2:92861545-92861564 | MS.gene053230:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 92858748 | 92862253 | 92858748 | ID=MS.gene053230 |
| chr4.2 | mRNA | 92858748 | 92862253 | 92858748 | ID=MS.gene053230.t1;Parent=MS.gene053230 |
| chr4.2 | exon | 92862038 | 92862253 | 92862038 | ID=MS.gene053230.t1.exon1;Parent=MS.gene053230.t1 |
| chr4.2 | CDS | 92862038 | 92862253 | 92862038 | ID=cds.MS.gene053230.t1;Parent=MS.gene053230.t1 |
| chr4.2 | exon | 92859162 | 92859487 | 92859162 | ID=MS.gene053230.t1.exon2;Parent=MS.gene053230.t1 |
| chr4.2 | CDS | 92859162 | 92859487 | 92859162 | ID=cds.MS.gene053230.t1;Parent=MS.gene053230.t1 |
| chr4.2 | exon | 92858748 | 92858910 | 92858748 | ID=MS.gene053230.t1.exon3;Parent=MS.gene053230.t1 |
| chr4.2 | CDS | 92858748 | 92858910 | 92858748 | ID=cds.MS.gene053230.t1;Parent=MS.gene053230.t1 |
| Gene Sequence |
| Protein sequence |
